RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12572
         (366 letters)



>d1slua_ b.16.1.1 (A:) Ecotin, trypsin inhibitor {Escherichia coli
           [TaxId: 562]}
          Length = 133

 Score = 27.4 bits (61), Expect = 1.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 213 LVIGKSMQTECKCHGFSGSCTLRT 236
           L+IG++++ +C  H   G    +T
Sbjct: 31  LLIGQTLEVDCNLHRLGGKLENKT 54


>d2r31a1 d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denitrificans
           [TaxId: 266]}
          Length = 233

 Score = 27.6 bits (61), Expect = 2.3
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 252 KKRFRSSIRVVPSNDGHSFVPISKTVKPPDKMDLV 286
            +RF +S+ +     G + +   + ++ P K  L 
Sbjct: 4   ARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLR 38


>d2r6ia1 d.381.1.1 (A:1-261) Uncharacterized protein Atu1473
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 261

 Score = 27.2 bits (60), Expect = 2.8
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 250 TLKKRFRSSIRVVPSNDGHSFVPI-SKTVKPPDKMDLV 286
            L KRF   + V    +G   + +  K ++ P K  LV
Sbjct: 28  PLPKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLV 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,368,649
Number of extensions: 64324
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 16
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)