Query psy12573
Match_columns 315
No_of_seqs 362 out of 2747
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 22:48:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1680|consensus 100.0 2E-43 4.4E-48 291.2 14.3 209 38-315 47-256 (290)
2 PRK08139 enoyl-CoA hydratase; 100.0 3.3E-42 7.2E-47 298.1 20.6 221 24-314 10-231 (266)
3 PRK06143 enoyl-CoA hydratase; 100.0 6.4E-42 1.4E-46 294.6 20.4 210 38-314 17-227 (256)
4 PRK09120 p-hydroxycinnamoyl Co 100.0 7.6E-42 1.6E-46 297.0 20.1 214 38-314 18-232 (275)
5 PRK08150 enoyl-CoA hydratase; 100.0 1.1E-41 2.4E-46 293.1 20.5 208 38-314 12-220 (255)
6 PRK06190 enoyl-CoA hydratase; 100.0 1.2E-41 2.7E-46 292.6 20.4 218 24-314 3-222 (258)
7 PRK05862 enoyl-CoA hydratase; 100.0 2.1E-41 4.6E-46 292.2 20.5 208 38-314 14-222 (257)
8 PRK05674 gamma-carboxygeranoyl 100.0 1.4E-41 3.1E-46 294.0 18.6 212 38-313 16-227 (265)
9 PRK09245 enoyl-CoA hydratase; 100.0 3.2E-41 7E-46 292.6 20.1 215 38-313 13-230 (266)
10 PLN02600 enoyl-CoA hydratase 100.0 2.4E-41 5.1E-46 290.5 19.0 210 38-314 5-216 (251)
11 PRK05995 enoyl-CoA hydratase; 100.0 4.6E-41 9.9E-46 291.0 20.9 212 38-313 14-225 (262)
12 PRK05980 enoyl-CoA hydratase; 100.0 3.5E-41 7.6E-46 291.4 20.1 214 38-314 13-228 (260)
13 PRK09674 enoyl-CoA hydratase-i 100.0 3.2E-41 7E-46 290.5 19.7 208 38-314 12-220 (255)
14 PRK06127 enoyl-CoA hydratase; 100.0 4.5E-41 9.8E-46 291.7 20.6 224 22-314 8-234 (269)
15 PRK05869 enoyl-CoA hydratase; 100.0 3.3E-41 7.1E-46 283.8 19.0 210 31-308 11-221 (222)
16 PRK09076 enoyl-CoA hydratase; 100.0 5.3E-41 1.1E-45 289.7 20.2 209 38-314 13-223 (258)
17 PRK06142 enoyl-CoA hydratase; 100.0 3.9E-41 8.5E-46 292.9 19.6 231 25-314 6-238 (272)
18 PRK08138 enoyl-CoA hydratase; 100.0 7.3E-41 1.6E-45 289.3 20.6 218 24-314 6-226 (261)
19 TIGR02280 PaaB1 phenylacetate 100.0 5.3E-41 1.1E-45 289.5 19.5 212 38-314 9-221 (256)
20 PRK06563 enoyl-CoA hydratase; 100.0 3.7E-41 8E-46 290.3 18.5 211 38-314 9-220 (255)
21 PRK05809 3-hydroxybutyryl-CoA 100.0 7.7E-41 1.7E-45 289.3 20.5 210 38-314 14-225 (260)
22 PRK07657 enoyl-CoA hydratase; 100.0 8.3E-41 1.8E-45 288.9 20.0 210 38-314 14-225 (260)
23 PRK08140 enoyl-CoA hydratase; 100.0 1.2E-40 2.7E-45 288.3 20.6 213 38-314 14-227 (262)
24 PRK06144 enoyl-CoA hydratase; 100.0 1.4E-40 2.9E-45 287.6 20.2 209 38-312 18-229 (262)
25 PLN02888 enoyl-CoA hydratase 100.0 1.4E-40 3.1E-45 287.5 20.0 218 23-314 7-227 (265)
26 PRK07511 enoyl-CoA hydratase; 100.0 1.7E-40 3.6E-45 287.2 20.4 213 38-314 13-226 (260)
27 TIGR03210 badI 2-ketocyclohexa 100.0 1.4E-40 3.1E-45 286.5 19.8 203 38-308 12-216 (256)
28 PLN02664 enoyl-CoA hydratase/d 100.0 8.5E-41 1.9E-45 290.8 18.4 222 38-314 18-240 (275)
29 PRK06494 enoyl-CoA hydratase; 100.0 2E-40 4.3E-45 286.2 19.9 216 25-314 4-222 (259)
30 PRK07468 enoyl-CoA hydratase; 100.0 1.4E-40 3.1E-45 287.6 18.5 211 38-312 15-225 (262)
31 PRK07658 enoyl-CoA hydratase; 100.0 2.4E-40 5.3E-45 285.9 19.7 210 38-314 12-222 (257)
32 PRK06023 enoyl-CoA hydratase; 100.0 1.5E-40 3.2E-45 285.7 18.2 201 38-306 16-217 (251)
33 PRK07260 enoyl-CoA hydratase; 100.0 1.9E-40 4.1E-45 285.9 18.9 214 38-314 12-226 (255)
34 PRK07799 enoyl-CoA hydratase; 100.0 2.5E-40 5.3E-45 286.5 19.7 213 38-314 15-228 (263)
35 PRK08259 enoyl-CoA hydratase; 100.0 2.1E-40 4.6E-45 284.9 19.1 208 38-314 13-221 (254)
36 PRK08258 enoyl-CoA hydratase; 100.0 3E-40 6.6E-45 287.7 20.3 214 38-314 27-242 (277)
37 PRK08252 enoyl-CoA hydratase; 100.0 3.2E-40 7E-45 284.2 19.9 206 38-314 13-219 (254)
38 PRK05864 enoyl-CoA hydratase; 100.0 2.5E-40 5.4E-45 288.0 19.3 216 38-313 20-238 (276)
39 PRK05870 enoyl-CoA hydratase; 100.0 2.1E-40 4.5E-45 284.5 18.3 208 38-314 13-222 (249)
40 PRK07327 enoyl-CoA hydratase; 100.0 2.2E-40 4.7E-45 287.2 18.3 204 38-306 22-226 (268)
41 PRK03580 carnitinyl-CoA dehydr 100.0 3.8E-40 8.3E-45 284.8 19.7 208 38-314 13-222 (261)
42 PRK07110 polyketide biosynthes 100.0 5.8E-40 1.3E-44 281.6 19.7 207 38-314 15-222 (249)
43 PRK06495 enoyl-CoA hydratase; 100.0 6.8E-40 1.5E-44 282.6 19.7 209 38-314 14-222 (257)
44 PRK06688 enoyl-CoA hydratase; 100.0 6.2E-40 1.4E-44 283.8 19.4 209 38-314 15-224 (259)
45 PRK07659 enoyl-CoA hydratase; 100.0 5.6E-40 1.2E-44 283.6 19.1 209 38-314 16-225 (260)
46 TIGR03222 benzo_boxC benzoyl-C 100.0 5.5E-40 1.2E-44 305.3 20.1 268 38-314 21-505 (546)
47 PRK06210 enoyl-CoA hydratase; 100.0 5.5E-40 1.2E-44 285.8 18.8 220 38-314 16-237 (272)
48 TIGR01929 menB naphthoate synt 100.0 7.6E-40 1.7E-44 282.4 19.3 205 38-308 13-219 (259)
49 PRK05981 enoyl-CoA hydratase; 100.0 1.1E-39 2.3E-44 283.1 19.6 215 38-313 14-230 (266)
50 PRK07938 enoyl-CoA hydratase; 100.0 7.4E-40 1.6E-44 280.7 18.2 208 38-314 12-219 (249)
51 PRK08290 enoyl-CoA hydratase; 100.0 9.8E-40 2.1E-44 285.2 19.3 240 25-314 4-245 (288)
52 PRK07396 dihydroxynaphthoic ac 100.0 2.6E-39 5.6E-44 281.1 19.3 204 38-307 23-228 (273)
53 TIGR03189 dienoyl_CoA_hyt cycl 100.0 3E-39 6.4E-44 277.1 19.4 203 38-313 11-214 (251)
54 PRK11423 methylmalonyl-CoA dec 100.0 3.3E-39 7.1E-44 278.6 19.5 201 38-307 14-217 (261)
55 PRK08260 enoyl-CoA hydratase; 100.0 3.4E-39 7.4E-44 283.5 20.0 219 38-307 14-235 (296)
56 PRK12478 enoyl-CoA hydratase; 100.0 1.9E-39 4E-44 284.6 18.0 222 38-314 15-238 (298)
57 COG1024 CaiD Enoyl-CoA hydrata 100.0 3.3E-39 7.1E-44 278.7 19.1 210 38-313 15-225 (257)
58 PRK07509 enoyl-CoA hydratase; 100.0 3.4E-39 7.3E-44 279.5 19.2 215 38-314 13-228 (262)
59 PLN03214 probable enoyl-CoA hy 100.0 3.8E-39 8.2E-44 280.1 17.3 211 38-314 22-236 (278)
60 PRK08184 benzoyl-CoA-dihydrodi 100.0 6.7E-39 1.4E-43 299.1 20.0 278 24-314 14-509 (550)
61 PLN02921 naphthoate synthase 100.0 1.6E-38 3.4E-43 280.6 20.1 205 38-308 77-283 (327)
62 PRK08272 enoyl-CoA hydratase; 100.0 9.7E-39 2.1E-43 281.4 18.4 226 38-308 20-246 (302)
63 PRK06072 enoyl-CoA hydratase; 100.0 1.5E-38 3.3E-43 272.6 19.1 202 38-313 10-212 (248)
64 PRK05617 3-hydroxyisobutyryl-C 100.0 1.2E-38 2.6E-43 284.2 18.3 213 38-314 13-289 (342)
65 PF00378 ECH: Enoyl-CoA hydrat 100.0 2.1E-39 4.5E-44 278.5 12.9 209 38-313 8-217 (245)
66 PRK07827 enoyl-CoA hydratase; 100.0 1.8E-38 3.8E-43 274.4 18.4 209 38-313 16-225 (260)
67 PRK06213 enoyl-CoA hydratase; 100.0 2.7E-38 5.9E-43 268.2 18.2 206 38-314 13-220 (229)
68 PLN02874 3-hydroxyisobutyryl-C 100.0 3.5E-38 7.6E-43 284.3 19.6 212 38-315 21-300 (379)
69 KOG1681|consensus 100.0 3.9E-40 8.4E-45 262.8 5.6 225 37-315 31-257 (292)
70 PRK08321 naphthoate synthase; 100.0 5.4E-38 1.2E-42 276.0 19.8 215 38-308 35-258 (302)
71 PRK07854 enoyl-CoA hydratase; 100.0 3.3E-38 7.3E-43 269.5 17.2 192 38-306 10-202 (243)
72 PRK07112 polyketide biosynthes 100.0 7E-38 1.5E-42 269.6 19.0 200 38-306 14-213 (255)
73 PLN02157 3-hydroxyisobutyryl-C 100.0 8.9E-38 1.9E-42 281.1 18.6 214 24-306 36-251 (401)
74 PRK08788 enoyl-CoA hydratase; 100.0 2E-37 4.4E-42 268.7 18.8 215 38-314 27-248 (287)
75 TIGR03200 dearomat_oah 6-oxocy 100.0 7.6E-37 1.7E-41 267.0 16.5 207 36-306 36-258 (360)
76 PLN02267 enoyl-CoA hydratase/i 100.0 8.3E-36 1.8E-40 253.8 18.3 205 38-307 10-220 (239)
77 PLN02988 3-hydroxyisobutyryl-C 100.0 1.1E-35 2.5E-40 266.8 17.9 213 24-305 8-222 (381)
78 KOG1679|consensus 100.0 1.5E-36 3.2E-41 240.3 9.0 225 24-315 26-257 (291)
79 PRK11730 fadB multifunctional 100.0 8.1E-35 1.8E-39 282.3 20.2 190 38-291 17-207 (715)
80 PLN02851 3-hydroxyisobutyryl-C 100.0 9.2E-34 2E-38 254.9 18.9 206 24-298 41-248 (407)
81 PRK11154 fadJ multifunctional 100.0 7.1E-34 1.5E-38 275.8 18.7 211 38-314 16-266 (708)
82 TIGR02440 FadJ fatty oxidation 100.0 1.6E-33 3.5E-38 272.6 18.9 212 38-315 11-262 (699)
83 KOG0016|consensus 100.0 2.4E-33 5.1E-38 229.4 15.5 227 23-313 5-234 (266)
84 COG0447 MenB Dihydroxynaphthoi 100.0 2.9E-33 6.3E-38 221.9 13.0 216 24-306 17-236 (282)
85 TIGR02437 FadB fatty oxidation 100.0 4.7E-32 1E-36 262.5 16.5 188 38-289 17-205 (714)
86 TIGR02441 fa_ox_alpha_mit fatt 100.0 6.9E-31 1.5E-35 254.9 17.6 199 22-289 10-226 (737)
87 cd06558 crotonase-like Crotona 100.0 1E-30 2.2E-35 217.1 15.4 185 38-287 9-194 (195)
88 KOG1682|consensus 100.0 5E-30 1.1E-34 201.6 13.8 208 38-311 42-249 (287)
89 KOG1684|consensus 99.9 2E-26 4.3E-31 196.5 12.3 186 24-277 37-225 (401)
90 TIGR03222 benzo_boxC benzoyl-C 99.9 7.9E-25 1.7E-29 204.1 18.4 175 115-293 49-231 (546)
91 PRK08184 benzoyl-CoA-dihydrodi 99.9 3.9E-24 8.5E-29 200.2 18.3 177 114-294 52-236 (550)
92 cd07014 S49_SppA Signal peptid 99.6 1.6E-15 3.5E-20 123.6 11.7 140 66-280 25-175 (177)
93 cd02006 TPP_Gcl Thiamine pyrop 99.6 5.5E-15 1.2E-19 123.0 12.8 95 5-104 4-99 (202)
94 cd02013 TPP_Xsc_like Thiamine 99.6 1.4E-14 3.1E-19 119.8 13.0 93 7-104 2-95 (196)
95 cd07020 Clp_protease_NfeD_1 No 99.6 1.3E-14 2.8E-19 119.1 10.3 102 177-279 49-171 (187)
96 cd02015 TPP_AHAS Thiamine pyro 99.5 1.4E-13 3E-18 113.2 13.0 91 9-104 1-92 (186)
97 PLN02157 3-hydroxyisobutyryl-C 99.5 3.4E-14 7.5E-19 128.6 8.0 177 119-315 122-328 (401)
98 cd02010 TPP_ALS Thiamine pyrop 99.5 3E-13 6.6E-18 110.0 11.8 158 11-193 1-167 (177)
99 COG0028 IlvB Thiamine pyrophos 99.5 2.9E-13 6.3E-18 128.0 13.4 155 7-192 357-527 (550)
100 cd02004 TPP_BZL_OCoD_HPCL Thia 99.5 1.9E-12 4E-17 105.1 13.8 89 11-104 1-90 (172)
101 cd02014 TPP_POX Thiamine pyrop 99.4 2.1E-12 4.6E-17 105.3 13.1 92 8-104 1-93 (178)
102 cd02003 TPP_IolD Thiamine pyro 99.4 2E-12 4.3E-17 107.8 13.0 88 12-104 2-90 (205)
103 PLN02851 3-hydroxyisobutyryl-C 99.4 3.2E-13 6.9E-18 122.3 8.5 181 115-315 123-333 (407)
104 PRK08273 thiamine pyrophosphat 99.4 1.5E-12 3.4E-17 125.5 13.5 94 6-104 363-458 (597)
105 cd02005 TPP_PDC_IPDC Thiamine 99.4 4.1E-12 8.9E-17 104.0 13.5 91 8-104 1-92 (183)
106 TIGR01504 glyox_carbo_lig glyo 99.4 2.4E-12 5.3E-17 123.8 13.4 94 6-104 366-460 (588)
107 PLN02988 3-hydroxyisobutyryl-C 99.4 4.2E-13 9.1E-18 121.2 7.5 174 122-315 97-300 (381)
108 KOG1185|consensus 99.4 5.1E-12 1.1E-16 112.8 13.3 97 4-104 375-472 (571)
109 PRK12474 hypothetical protein; 99.4 6.1E-12 1.3E-16 119.5 14.5 176 5-193 337-516 (518)
110 PRK07979 acetolactate synthase 99.4 4.6E-12 1E-16 121.8 13.8 94 6-104 369-463 (574)
111 PRK08979 acetolactate synthase 99.4 4.2E-12 9.2E-17 122.0 13.3 94 6-104 369-463 (572)
112 PRK06466 acetolactate synthase 99.4 5.8E-12 1.3E-16 121.1 13.8 94 6-104 371-465 (574)
113 TIGR03457 sulphoacet_xsc sulfo 99.4 7E-12 1.5E-16 120.7 14.3 94 6-104 378-472 (579)
114 PRK09107 acetolactate synthase 99.4 5.8E-12 1.3E-16 121.4 13.8 165 6-193 377-551 (595)
115 PLN02470 acetolactate synthase 99.4 6.6E-12 1.4E-16 121.0 14.0 93 7-104 375-468 (585)
116 PRK07282 acetolactate synthase 99.4 3.8E-12 8.3E-17 122.1 12.0 94 6-104 366-460 (566)
117 PRK06965 acetolactate synthase 99.4 7.1E-12 1.5E-16 120.7 13.5 94 6-104 385-479 (587)
118 TIGR02720 pyruv_oxi_spxB pyruv 99.4 8.8E-12 1.9E-16 119.8 13.9 94 6-104 356-450 (575)
119 PRK06457 pyruvate dehydrogenas 99.4 7.9E-12 1.7E-16 119.6 13.3 94 6-104 344-439 (549)
120 PRK06154 hypothetical protein; 99.4 1.6E-11 3.4E-16 117.7 15.0 95 5-104 377-473 (565)
121 cd02002 TPP_BFDC Thiamine pyro 99.4 2.2E-11 4.8E-16 99.4 13.7 90 9-104 1-91 (178)
122 PRK06456 acetolactate synthase 99.3 2.6E-12 5.7E-17 123.6 9.3 164 6-192 369-541 (572)
123 PRK09124 pyruvate dehydrogenas 99.3 1.4E-11 3E-16 118.6 14.2 169 6-192 356-526 (574)
124 PRK07525 sulfoacetaldehyde ace 99.3 1.6E-11 3.4E-16 118.5 14.1 94 6-104 383-477 (588)
125 TIGR02418 acolac_catab acetola 99.3 1.9E-11 4.2E-16 116.8 14.6 166 6-194 356-528 (539)
126 PRK08527 acetolactate synthase 99.3 1.6E-11 3.5E-16 117.9 13.9 94 6-104 362-456 (563)
127 PRK07586 hypothetical protein; 99.3 1.6E-11 3.5E-16 116.7 13.7 171 6-193 334-512 (514)
128 PRK06725 acetolactate synthase 99.3 1.7E-11 3.7E-16 117.6 13.7 94 6-104 370-464 (570)
129 PRK08978 acetolactate synthase 99.3 1.6E-11 3.5E-16 117.5 13.3 165 6-193 349-522 (548)
130 TIGR03393 indolpyr_decarb indo 99.3 1.3E-11 2.9E-16 117.8 12.6 157 7-194 354-525 (539)
131 PRK05858 hypothetical protein; 99.3 1.7E-11 3.7E-16 117.2 13.3 166 6-193 355-527 (542)
132 PRK07710 acetolactate synthase 99.3 1.9E-11 4.2E-16 117.5 13.6 169 6-193 372-545 (571)
133 PRK08611 pyruvate oxidase; Pro 99.3 2E-11 4.4E-16 117.4 13.5 164 5-193 355-527 (576)
134 cd02009 TPP_SHCHC_synthase Thi 99.3 2.1E-11 4.5E-16 99.1 11.4 88 11-104 3-92 (175)
135 PRK07418 acetolactate synthase 99.3 2.8E-11 6.1E-16 117.3 13.9 165 6-193 384-556 (616)
136 PRK08155 acetolactate synthase 99.3 3.8E-11 8.3E-16 115.3 14.5 94 6-104 367-461 (564)
137 PRK07789 acetolactate synthase 99.3 2.3E-11 5E-16 117.8 12.7 94 6-104 395-489 (612)
138 PLN02573 pyruvate decarboxylas 99.3 2.7E-11 5.8E-16 116.4 13.0 93 6-104 377-470 (578)
139 PRK08617 acetolactate synthase 99.3 2.5E-11 5.4E-16 116.4 12.7 166 5-193 361-533 (552)
140 PRK06048 acetolactate synthase 99.3 3.8E-11 8.2E-16 115.3 13.8 167 6-194 363-536 (561)
141 PRK06163 hypothetical protein; 99.3 7.5E-11 1.6E-15 97.5 13.4 87 6-104 10-99 (202)
142 TIGR03254 oxalate_oxc oxalyl-C 99.3 4.9E-11 1.1E-15 114.4 14.2 169 6-193 363-535 (554)
143 PRK11269 glyoxylate carboligas 99.3 2.8E-11 6.1E-16 116.8 12.5 94 6-104 367-461 (591)
144 PRK06546 pyruvate dehydrogenas 99.3 6.1E-11 1.3E-15 114.0 14.1 94 6-104 356-450 (578)
145 PRK08322 acetolactate synthase 99.3 6.7E-11 1.4E-15 113.4 14.1 164 6-194 354-526 (547)
146 KOG4166|consensus 99.3 5.8E-11 1.3E-15 104.5 12.0 164 5-192 468-643 (675)
147 TIGR00118 acolac_lg acetolacta 99.3 5.9E-11 1.3E-15 114.0 12.7 94 6-104 360-454 (558)
148 PRK06276 acetolactate synthase 99.3 6.5E-11 1.4E-15 114.2 12.8 94 6-104 362-461 (586)
149 cd07019 S49_SppA_1 Signal pept 99.2 4.8E-11 1E-15 99.9 9.8 82 66-221 24-105 (211)
150 KOG1684|consensus 99.2 6.4E-12 1.4E-16 108.2 4.2 186 111-315 116-332 (401)
151 PRK06882 acetolactate synthase 99.2 1.3E-10 2.9E-15 111.9 13.8 93 7-104 370-463 (574)
152 PRK09259 putative oxalyl-CoA d 99.2 1.3E-10 2.8E-15 111.8 13.5 167 6-192 370-542 (569)
153 PRK06112 acetolactate synthase 99.2 2.2E-10 4.8E-15 110.4 13.7 94 6-104 384-479 (578)
154 CHL00099 ilvB acetohydroxyacid 99.2 2E-10 4.3E-15 110.7 13.3 92 6-104 380-472 (585)
155 cd00394 Clp_protease_like Case 99.2 3.3E-10 7.3E-15 90.9 11.6 91 180-270 51-161 (161)
156 TIGR03200 dearomat_oah 6-oxocy 99.2 4.9E-11 1.1E-15 105.3 7.1 170 119-307 113-295 (360)
157 cd07016 S14_ClpP_1 Caseinolyti 99.2 1.7E-10 3.8E-15 92.4 9.4 94 177-270 49-160 (160)
158 PRK05980 enoyl-CoA hydratase; 99.2 3.6E-11 7.7E-16 104.2 5.7 150 119-287 89-255 (260)
159 PLN02600 enoyl-CoA hydratase 99.2 3.3E-11 7.1E-16 103.7 5.3 149 120-287 78-243 (251)
160 PRK08199 thiamine pyrophosphat 99.2 5.5E-10 1.2E-14 107.2 14.0 93 6-104 364-457 (557)
161 PLN03214 probable enoyl-CoA hy 99.1 5.2E-11 1.1E-15 103.8 5.9 152 121-291 98-267 (278)
162 cd02001 TPP_ComE_PpyrDC Thiami 99.1 6.9E-10 1.5E-14 88.4 11.7 145 12-193 2-152 (157)
163 PLN02664 enoyl-CoA hydratase/d 99.1 5.1E-11 1.1E-15 104.0 5.2 152 117-287 98-267 (275)
164 PRK07658 enoyl-CoA hydratase; 99.1 6.4E-11 1.4E-15 102.4 5.5 149 120-287 84-249 (257)
165 PRK06143 enoyl-CoA hydratase; 99.1 8.6E-11 1.9E-15 101.4 6.1 149 119-287 89-254 (256)
166 PRK09076 enoyl-CoA hydratase; 99.1 4.3E-11 9.4E-16 103.4 4.2 149 120-287 85-250 (258)
167 PRK08150 enoyl-CoA hydratase; 99.1 4.3E-11 9.3E-16 103.2 4.2 149 120-287 82-247 (255)
168 KOG1680|consensus 99.1 1.7E-11 3.7E-16 102.4 1.4 141 128-287 125-282 (290)
169 PRK07657 enoyl-CoA hydratase; 99.1 7.5E-11 1.6E-15 102.1 5.5 149 120-287 87-252 (260)
170 cd03371 TPP_PpyrDC Thiamine py 99.1 1.8E-09 4E-14 88.5 13.4 84 12-104 2-90 (188)
171 PRK06142 enoyl-CoA hydratase; 99.1 5.6E-11 1.2E-15 103.6 4.6 152 117-287 96-265 (272)
172 PRK09120 p-hydroxycinnamoyl Co 99.1 6.3E-11 1.4E-15 103.3 4.8 150 120-288 94-263 (275)
173 PRK07938 enoyl-CoA hydratase; 99.1 1E-10 2.2E-15 100.6 5.9 146 120-287 84-246 (249)
174 PRK07511 enoyl-CoA hydratase; 99.1 5.8E-11 1.3E-15 102.8 4.3 96 119-232 87-183 (260)
175 COG3961 Pyruvate decarboxylase 99.1 2.5E-10 5.4E-15 103.3 8.3 96 3-104 357-453 (557)
176 PRK07524 hypothetical protein; 99.1 1.1E-09 2.3E-14 104.8 13.1 166 8-197 357-530 (535)
177 PRK07854 enoyl-CoA hydratase; 99.1 4.9E-11 1.1E-15 102.1 3.4 146 121-287 77-235 (243)
178 PRK07260 enoyl-CoA hydratase; 99.1 9.2E-11 2E-15 101.3 4.7 96 119-232 87-183 (255)
179 PRK05862 enoyl-CoA hydratase; 99.1 9.1E-11 2E-15 101.4 4.4 93 122-232 86-179 (257)
180 PRK05674 gamma-carboxygeranoyl 99.1 1.5E-10 3.2E-15 100.5 5.6 148 120-287 91-256 (265)
181 PRK07092 benzoylformate decarb 99.1 2.7E-09 5.8E-14 101.9 14.6 94 5-104 355-449 (530)
182 PRK08258 enoyl-CoA hydratase; 99.1 1.3E-10 2.7E-15 101.6 5.1 150 119-287 102-269 (277)
183 TIGR02280 PaaB1 phenylacetate 99.1 8.4E-11 1.8E-15 101.6 3.9 148 121-287 84-248 (256)
184 PRK08138 enoyl-CoA hydratase; 99.1 1.2E-10 2.7E-15 100.8 4.7 94 121-232 89-183 (261)
185 PRK07449 2-succinyl-5-enolpyru 99.1 1.7E-09 3.6E-14 104.2 12.9 93 6-104 373-466 (568)
186 PRK05809 3-hydroxybutyryl-CoA 99.1 1.4E-10 3.1E-15 100.4 5.0 148 121-287 88-252 (260)
187 PRK07468 enoyl-CoA hydratase; 99.1 1.1E-10 2.3E-15 101.3 4.1 148 120-287 90-254 (262)
188 PRK06127 enoyl-CoA hydratase; 99.1 1.1E-10 2.4E-15 101.5 4.2 149 120-287 96-261 (269)
189 PRK06495 enoyl-CoA hydratase; 99.1 2.3E-10 4.9E-15 98.9 6.2 146 120-287 87-249 (257)
190 PRK07509 enoyl-CoA hydratase; 99.1 9.9E-11 2.2E-15 101.5 3.9 150 119-287 91-255 (262)
191 PRK07659 enoyl-CoA hydratase; 99.1 1E-10 2.2E-15 101.2 3.9 97 118-232 86-183 (260)
192 PRK08266 hypothetical protein; 99.1 2.7E-09 5.9E-14 102.2 13.7 92 8-104 351-444 (542)
193 PRK08139 enoyl-CoA hydratase; 99.1 9.7E-11 2.1E-15 101.7 3.4 149 119-287 93-258 (266)
194 PRK09674 enoyl-CoA hydratase-i 99.1 1.2E-10 2.6E-15 100.6 3.9 147 122-287 84-247 (255)
195 PRK07799 enoyl-CoA hydratase; 99.0 9.7E-11 2.1E-15 101.6 3.4 144 125-287 95-255 (263)
196 cd02008 TPP_IOR_alpha Thiamine 99.0 2.1E-09 4.5E-14 87.7 10.8 80 12-104 13-94 (178)
197 PRK03580 carnitinyl-CoA dehydr 99.0 1.2E-10 2.5E-15 101.0 3.6 146 123-287 87-253 (261)
198 cd07022 S49_Sppa_36K_type Sign 99.0 5.3E-09 1.1E-13 87.8 13.4 94 181-278 69-210 (214)
199 PRK08140 enoyl-CoA hydratase; 99.0 1.7E-10 3.7E-15 100.1 4.4 149 120-287 89-254 (262)
200 PRK09245 enoyl-CoA hydratase; 99.0 1.5E-10 3.4E-15 100.5 4.2 96 119-232 92-188 (266)
201 PF00378 ECH: Enoyl-CoA hydrat 99.0 3.3E-11 7.2E-16 103.5 -0.2 152 117-287 77-245 (245)
202 PRK06688 enoyl-CoA hydratase; 99.0 2.2E-10 4.8E-15 99.2 4.7 95 120-232 86-181 (259)
203 TIGR01929 menB naphthoate synt 99.0 1.4E-10 3E-15 100.3 3.4 94 121-232 88-182 (259)
204 TIGR00705 SppA_67K signal pept 99.0 2.1E-09 4.6E-14 102.7 11.7 109 178-291 370-524 (584)
205 PRK06494 enoyl-CoA hydratase; 99.0 1.4E-10 3E-15 100.4 3.2 143 126-287 90-251 (259)
206 PRK06563 enoyl-CoA hydratase; 99.0 1.6E-10 3.4E-15 99.8 3.4 144 125-287 87-247 (255)
207 cd07023 S49_Sppa_N_C Signal pe 99.0 4.4E-09 9.6E-14 88.0 12.0 43 179-221 59-101 (208)
208 PRK08327 acetolactate synthase 99.0 5.5E-09 1.2E-13 100.5 14.2 91 6-104 382-474 (569)
209 PRK05981 enoyl-CoA hydratase; 99.0 2E-10 4.4E-15 99.8 3.9 96 119-232 92-188 (266)
210 PRK05870 enoyl-CoA hydratase; 99.0 1E-10 2.2E-15 100.7 2.0 94 121-232 86-180 (249)
211 TIGR03189 dienoyl_CoA_hyt cycl 99.0 3E-10 6.5E-15 97.7 4.9 148 120-287 79-243 (251)
212 PRK07064 hypothetical protein; 99.0 3.3E-09 7.2E-14 101.7 12.4 166 8-194 354-526 (544)
213 cd03372 TPP_ComE Thiamine pyro 99.0 6.1E-09 1.3E-13 84.9 11.6 81 12-104 2-83 (179)
214 COG1024 CaiD Enoyl-CoA hydrata 99.0 5.1E-10 1.1E-14 96.8 5.5 99 115-231 83-182 (257)
215 PRK05995 enoyl-CoA hydratase; 99.0 3.5E-10 7.6E-15 98.1 4.5 94 120-232 89-183 (262)
216 KOG1679|consensus 99.0 1.2E-10 2.6E-15 93.4 1.3 100 115-232 109-209 (291)
217 TIGR03210 badI 2-ketocyclohexa 99.0 2.6E-10 5.6E-15 98.5 3.5 148 121-287 85-248 (256)
218 PRK07327 enoyl-CoA hydratase; 99.0 5.3E-10 1.1E-14 97.2 5.4 95 120-232 96-191 (268)
219 PLN02888 enoyl-CoA hydratase 99.0 2.8E-10 6.2E-15 98.6 3.7 149 122-289 91-258 (265)
220 PRK06210 enoyl-CoA hydratase; 99.0 2.7E-10 5.8E-15 99.4 3.5 95 120-232 98-193 (272)
221 KOG1681|consensus 99.0 6.8E-11 1.5E-15 95.7 -0.6 136 111-264 107-259 (292)
222 TIGR03394 indol_phenyl_DC indo 99.0 6.8E-09 1.5E-13 99.0 12.7 89 6-104 353-444 (535)
223 PRK11423 methylmalonyl-CoA dec 99.0 6.9E-10 1.5E-14 96.1 5.1 95 120-232 86-181 (261)
224 PRK08260 enoyl-CoA hydratase; 99.0 5.8E-10 1.3E-14 98.3 4.5 96 119-232 102-198 (296)
225 PRK05864 enoyl-CoA hydratase; 99.0 5.3E-10 1.2E-14 97.6 4.1 97 118-232 97-195 (276)
226 PRK06072 enoyl-CoA hydratase; 99.0 5.6E-10 1.2E-14 95.9 4.2 89 121-221 80-169 (248)
227 PRK06023 enoyl-CoA hydratase; 98.9 5.6E-10 1.2E-14 96.1 4.1 94 121-232 88-182 (251)
228 TIGR00706 SppA_dom signal pept 98.9 2E-08 4.2E-13 83.9 13.2 101 181-283 54-204 (207)
229 TIGR03846 sulfopy_beta sulfopy 98.9 1.5E-08 3.2E-13 82.6 12.0 80 12-104 2-83 (181)
230 PRK07396 dihydroxynaphthoic ac 98.9 5.5E-10 1.2E-14 97.3 3.7 93 122-232 99-192 (273)
231 PRK06144 enoyl-CoA hydratase; 98.9 1.1E-09 2.4E-14 94.9 5.4 95 120-232 92-188 (262)
232 TIGR02441 fa_ox_alpha_mit fatt 98.9 1.6E-09 3.4E-14 106.3 6.5 96 119-232 97-195 (737)
233 PRK08252 enoyl-CoA hydratase; 98.9 3.9E-10 8.4E-15 97.3 2.0 142 127-287 88-246 (254)
234 PRK07112 polyketide biosynthes 98.9 1.1E-09 2.5E-14 94.4 4.6 93 121-232 87-180 (255)
235 PRK07827 enoyl-CoA hydratase; 98.9 7.5E-10 1.6E-14 95.9 3.4 94 120-232 91-185 (260)
236 cd00568 TPP_enzymes Thiamine p 98.9 2E-08 4.4E-13 81.0 11.5 86 14-104 2-88 (168)
237 PLN02921 naphthoate synthase 98.9 6E-10 1.3E-14 99.0 2.4 148 121-287 152-315 (327)
238 PF02775 TPP_enzyme_C: Thiamin 98.9 5.3E-09 1.1E-13 83.2 7.5 132 32-193 3-153 (153)
239 cd07018 S49_SppA_67K_type Sign 98.9 3.1E-08 6.8E-13 83.6 12.6 138 66-280 32-219 (222)
240 PRK08788 enoyl-CoA hydratase; 98.9 3.9E-09 8.5E-14 92.1 7.2 87 128-232 119-206 (287)
241 PRK07110 polyketide biosynthes 98.9 1.4E-09 3.1E-14 93.5 3.6 94 121-232 85-179 (249)
242 PRK05617 3-hydroxyisobutyryl-C 98.9 6.4E-10 1.4E-14 99.7 1.4 93 121-232 91-184 (342)
243 COG0447 MenB Dihydroxynaphthoi 98.9 3.1E-10 6.7E-15 91.3 -0.6 92 122-232 108-201 (282)
244 PRK08321 naphthoate synthase; 98.8 2E-09 4.2E-14 95.1 3.9 94 121-232 126-221 (302)
245 TIGR02437 FadB fatty oxidation 98.8 5.1E-09 1.1E-13 102.5 6.8 96 119-232 91-187 (714)
246 PRK05869 enoyl-CoA hydratase; 98.8 1.4E-09 3.1E-14 91.7 2.5 95 120-232 89-184 (222)
247 TIGR03297 Ppyr-DeCO2ase phosph 98.8 6.8E-08 1.5E-12 86.9 12.9 86 9-104 172-263 (361)
248 PRK06190 enoyl-CoA hydratase; 98.8 8E-09 1.7E-13 89.2 6.6 94 121-232 85-179 (258)
249 PRK12478 enoyl-CoA hydratase; 98.8 3.4E-09 7.4E-14 93.4 3.8 88 123-232 105-194 (298)
250 PRK08259 enoyl-CoA hydratase; 98.8 3.8E-09 8.2E-14 91.1 4.0 88 127-232 90-178 (254)
251 PRK11730 fadB multifunctional 98.8 5.9E-09 1.3E-13 102.3 5.5 96 119-232 91-187 (715)
252 PRK11154 fadJ multifunctional 98.7 1.3E-08 2.8E-13 99.9 6.3 95 120-232 91-188 (708)
253 cd02018 TPP_PFOR Thiamine pyro 98.7 9.8E-08 2.1E-12 81.2 10.3 92 11-103 13-111 (237)
254 PRK08272 enoyl-CoA hydratase; 98.7 6.2E-09 1.4E-13 92.1 3.1 95 117-232 114-209 (302)
255 PLN02874 3-hydroxyisobutyryl-C 98.7 3.4E-09 7.3E-14 96.3 0.8 93 121-232 96-189 (379)
256 cd03376 TPP_PFOR_porB_like Thi 98.7 1.3E-07 2.9E-12 80.2 10.2 89 10-104 12-105 (235)
257 cd07021 Clp_protease_NfeD_like 98.7 1.5E-07 3.3E-12 76.2 10.0 102 176-277 48-175 (178)
258 TIGR02440 FadJ fatty oxidation 98.7 3.3E-08 7.2E-13 96.8 6.7 95 120-232 86-183 (699)
259 PRK06213 enoyl-CoA hydratase; 98.7 1.4E-08 3E-13 86.3 3.1 95 120-232 81-177 (229)
260 cd03375 TPP_OGFOR Thiamine pyr 98.6 5.8E-07 1.3E-11 74.2 12.3 78 13-104 13-94 (193)
261 PRK08290 enoyl-CoA hydratase; 98.6 2.5E-08 5.5E-13 87.5 2.8 94 119-232 107-201 (288)
262 PLN02267 enoyl-CoA hydratase/i 98.6 3E-08 6.5E-13 84.7 2.9 95 120-232 84-181 (239)
263 COG3960 Glyoxylate carboligase 98.6 3.1E-07 6.8E-12 79.1 8.8 90 5-99 366-456 (592)
264 PRK05778 2-oxoglutarate ferred 98.5 2.1E-06 4.6E-11 75.2 13.4 80 11-104 30-113 (301)
265 cd06558 crotonase-like Crotona 98.5 6.5E-08 1.4E-12 80.1 2.3 99 116-232 79-178 (195)
266 PRK09628 oorB 2-oxoglutarate-a 98.4 3.8E-06 8.2E-11 72.8 12.3 83 7-104 24-111 (277)
267 PLN02980 2-oxoglutarate decarb 98.4 1.4E-06 3E-11 93.0 10.6 161 7-195 692-888 (1655)
268 PRK11867 2-oxoglutarate ferred 98.3 6.4E-06 1.4E-10 71.9 10.8 79 11-104 25-112 (286)
269 cd07015 Clp_protease_NfeD Nodu 98.3 7.3E-06 1.6E-10 65.8 10.0 101 177-277 49-169 (172)
270 PRK11866 2-oxoacid ferredoxin 98.3 9.2E-06 2E-10 70.4 10.8 163 13-199 17-195 (279)
271 TIGR03336 IOR_alpha indolepyru 98.3 6.7E-06 1.5E-10 79.5 11.1 82 10-104 363-446 (595)
272 KOG1184|consensus 98.2 1.6E-06 3.5E-11 78.8 5.0 94 5-104 363-457 (561)
273 TIGR02177 PorB_KorB 2-oxoacid: 98.1 2.7E-05 5.8E-10 67.8 11.0 68 22-104 26-96 (287)
274 PRK12319 acetyl-CoA carboxylas 98.1 0.00025 5.4E-09 60.7 16.7 153 117-298 85-247 (256)
275 PRK11869 2-oxoacid ferredoxin 98.0 7.2E-05 1.6E-09 64.9 11.6 156 21-199 32-196 (280)
276 PRK05724 acetyl-CoA carboxylas 98.0 0.00061 1.3E-08 59.8 16.7 158 115-299 136-305 (319)
277 COG3962 Acetolactate synthase 98.0 6.5E-05 1.4E-09 67.8 10.6 92 7-103 393-485 (617)
278 PLN03230 acetyl-coenzyme A car 98.0 0.00052 1.1E-08 61.8 15.7 156 116-300 207-376 (431)
279 CHL00198 accA acetyl-CoA carbo 97.9 0.00081 1.7E-08 59.1 16.3 156 116-299 140-308 (322)
280 TIGR00513 accA acetyl-CoA carb 97.9 0.00075 1.6E-08 59.2 16.1 156 116-298 137-304 (316)
281 cd07020 Clp_protease_NfeD_1 No 97.9 2.4E-05 5.2E-10 64.2 5.2 129 65-232 15-162 (187)
282 PLN03229 acetyl-coenzyme A car 97.8 0.00095 2E-08 64.1 15.8 156 116-300 228-397 (762)
283 TIGR00173 menD 2-succinyl-5-en 97.8 2.6E-05 5.5E-10 72.7 5.1 66 6-72 364-431 (432)
284 KOG1682|consensus 97.8 9.7E-06 2.1E-10 65.0 1.6 99 115-232 110-209 (287)
285 cd07013 S14_ClpP Caseinolytic 97.8 0.00026 5.6E-09 56.7 9.5 94 177-270 49-162 (162)
286 PRK10949 protease 4; Provision 97.7 0.00056 1.2E-08 66.0 13.2 105 178-284 388-539 (618)
287 KOG0016|consensus 97.7 3.6E-05 7.7E-10 64.4 3.5 94 120-231 97-191 (266)
288 PRK00277 clpP ATP-dependent Cl 97.6 0.00029 6.2E-09 58.4 7.6 96 178-273 81-196 (200)
289 PRK14512 ATP-dependent Clp pro 97.6 0.00052 1.1E-08 56.6 9.0 103 177-279 72-194 (197)
290 PRK12553 ATP-dependent Clp pro 97.5 0.00029 6.4E-09 58.6 7.3 97 177-273 84-202 (207)
291 cd07017 S14_ClpP_2 Caseinolyti 97.4 0.0009 1.9E-08 54.1 8.4 94 177-270 58-171 (171)
292 TIGR03133 malonate_beta malona 97.2 0.015 3.3E-07 50.2 14.3 77 187-273 137-217 (274)
293 PF01972 SDH_sah: Serine dehyd 97.2 0.011 2.4E-07 50.4 12.4 56 177-232 109-164 (285)
294 PF00574 CLP_protease: Clp pro 97.2 0.00062 1.3E-08 55.6 4.9 97 177-273 65-181 (182)
295 PRK05654 acetyl-CoA carboxylas 97.2 0.046 1E-06 47.9 16.6 96 181-293 189-285 (292)
296 TIGR00515 accD acetyl-CoA carb 97.1 0.079 1.7E-06 46.2 17.5 94 181-291 188-282 (285)
297 PF01343 Peptidase_S49: Peptid 97.1 0.00058 1.3E-08 54.2 4.0 100 182-283 2-149 (154)
298 COG0777 AccD Acetyl-CoA carbox 97.1 0.06 1.3E-06 45.8 15.8 100 176-293 185-286 (294)
299 PRK14514 ATP-dependent Clp pro 97.1 0.0041 9E-08 52.0 8.9 97 177-273 103-219 (221)
300 CHL00174 accD acetyl-CoA carbo 97.1 0.043 9.4E-07 47.8 15.3 83 184-288 205-293 (296)
301 CHL00028 clpP ATP-dependent Cl 97.1 0.0043 9.3E-08 51.3 8.9 97 177-273 79-196 (200)
302 PRK07189 malonate decarboxylas 97.0 0.033 7.2E-07 48.8 14.3 35 187-221 146-182 (301)
303 TIGR00493 clpP ATP-dependent C 97.0 0.0075 1.6E-07 49.6 9.3 95 178-272 76-190 (191)
304 PRK11778 putative inner membra 96.9 0.0049 1.1E-07 54.7 8.4 101 180-281 148-293 (330)
305 PRK12551 ATP-dependent Clp pro 96.9 0.0067 1.5E-07 49.9 8.7 97 177-273 74-190 (196)
306 PRK14513 ATP-dependent Clp pro 96.9 0.0083 1.8E-07 49.5 8.9 97 177-273 76-192 (201)
307 cd07014 S49_SppA Signal peptid 96.8 0.00025 5.3E-09 57.7 -0.8 93 126-233 67-167 (177)
308 COG0825 AccA Acetyl-CoA carbox 96.7 0.069 1.5E-06 45.8 13.2 127 120-273 140-266 (317)
309 KOG1683|consensus 96.6 0.00025 5.4E-09 62.5 -1.7 175 47-287 74-255 (380)
310 TIGR01117 mmdA methylmalonyl-C 96.6 0.081 1.8E-06 50.3 14.3 146 118-290 338-497 (512)
311 cd07016 S14_ClpP_1 Caseinolyti 96.5 0.0013 2.7E-08 52.6 1.6 80 64-167 16-95 (160)
312 TIGR03134 malonate_gamma malon 96.4 0.094 2E-06 44.5 12.2 88 178-273 99-189 (238)
313 COG1030 NfeD Membrane-bound se 96.2 0.018 3.8E-07 52.5 7.4 108 170-277 69-192 (436)
314 CHL00149 odpA pyruvate dehydro 96.2 0.038 8.2E-07 49.8 9.6 130 46-199 118-262 (341)
315 PRK12552 ATP-dependent Clp pro 96.2 0.027 5.8E-07 47.1 8.0 97 177-273 98-214 (222)
316 TIGR01117 mmdA methylmalonyl-C 96.2 0.11 2.4E-06 49.4 13.0 86 185-290 153-245 (512)
317 COG0616 SppA Periplasmic serin 96.1 0.023 5.1E-07 50.6 7.7 93 188-284 130-272 (317)
318 COG0740 ClpP Protease subunit 96.1 0.04 8.8E-07 45.0 8.3 96 177-273 76-192 (200)
319 cd07021 Clp_protease_NfeD_like 96.0 0.0065 1.4E-07 49.3 3.4 79 65-167 15-95 (178)
320 PF01039 Carboxyl_trans: Carbo 95.9 0.42 9.1E-06 45.4 15.6 87 181-289 127-221 (493)
321 TIGR00705 SppA_67K signal pept 95.7 0.33 7.2E-06 47.1 14.2 41 180-221 120-160 (584)
322 TIGR03181 PDH_E1_alph_x pyruva 95.5 0.077 1.7E-06 47.9 8.5 44 47-92 113-156 (341)
323 TIGR03182 PDH_E1_alph_y pyruva 95.4 0.14 3.1E-06 45.6 9.9 47 49-98 103-149 (315)
324 cd02012 TPP_TK Thiamine pyroph 95.2 0.14 3.1E-06 44.1 9.0 38 56-93 103-140 (255)
325 PRK10949 protease 4; Provision 94.8 0.68 1.5E-05 45.1 13.0 25 66-90 98-122 (618)
326 cd02007 TPP_DXS Thiamine pyrop 94.5 0.64 1.4E-05 38.3 10.7 43 55-98 72-114 (195)
327 PLN02820 3-methylcrotonyl-CoA 94.5 1.1 2.5E-05 43.1 13.7 88 182-289 201-295 (569)
328 cd02000 TPP_E1_PDC_ADC_BCADC T 94.5 0.59 1.3E-05 41.2 11.0 36 57-92 103-138 (293)
329 PLN02820 3-methylcrotonyl-CoA 94.3 1.4 3.1E-05 42.5 13.7 145 119-289 390-555 (569)
330 COG4799 Acetyl-CoA carboxylase 93.8 0.45 9.8E-06 44.8 9.2 131 120-289 116-253 (526)
331 cd07023 S49_Sppa_N_C Signal pe 92.2 0.055 1.2E-06 45.2 0.7 86 66-169 20-105 (208)
332 PRK05899 transketolase; Review 91.9 0.89 1.9E-05 44.6 8.8 38 56-93 116-163 (624)
333 cd07019 S49_SppA_1 Signal pept 91.8 0.052 1.1E-06 45.4 0.2 134 126-278 66-207 (211)
334 PF01039 Carboxyl_trans: Carbo 91.8 1.3 2.8E-05 42.1 9.6 147 119-291 318-481 (493)
335 PRK11865 pyruvate ferredoxin o 91.2 7.6 0.00016 34.3 13.0 79 12-97 27-108 (299)
336 cd07022 S49_Sppa_36K_type Sign 89.9 0.1 2.2E-06 43.8 0.2 99 43-168 12-111 (214)
337 PLN02374 pyruvate dehydrogenas 89.5 3.5 7.6E-05 38.4 9.9 46 49-97 187-239 (433)
338 PF13766 ECH_C: 2-enoyl-CoA Hy 88.6 0.47 1E-05 35.6 3.0 38 278-315 30-67 (118)
339 PRK05444 1-deoxy-D-xylulose-5- 86.3 6.6 0.00014 38.3 10.2 45 56-101 115-160 (580)
340 PF06833 MdcE: Malonate decarb 85.6 21 0.00045 30.2 14.3 92 174-273 93-187 (234)
341 PRK11864 2-ketoisovalerate fer 85.0 27 0.00058 30.9 13.7 77 14-96 29-108 (300)
342 PRK07189 malonate decarboxylas 84.8 2.2 4.8E-05 37.6 5.4 92 58-162 82-179 (301)
343 TIGR03133 malonate_beta malona 83.5 3.2 7E-05 36.0 5.9 88 58-161 73-169 (274)
344 COG0777 AccD Acetyl-CoA carbox 82.5 5.5 0.00012 34.3 6.7 105 46-163 123-229 (294)
345 cd07013 S14_ClpP Caseinolytic 82.1 3.3 7.3E-05 32.9 5.2 76 62-160 11-90 (162)
346 COG0616 SppA Periplasmic serin 81.6 3.7 8E-05 36.6 5.8 84 66-168 83-166 (317)
347 TIGR00706 SppA_dom signal pept 81.1 0.49 1.1E-05 39.4 0.0 81 66-167 16-98 (207)
348 cd00394 Clp_protease_like Case 79.7 0.44 9.5E-06 37.8 -0.7 80 65-165 13-92 (161)
349 cd07015 Clp_protease_NfeD Nodu 79.0 3.7 8E-05 33.1 4.4 76 65-164 15-95 (172)
350 PF00455 DeoRC: DeoR C termina 78.5 5.4 0.00012 31.7 5.3 63 13-89 8-71 (161)
351 KOG0840|consensus 77.5 7 0.00015 33.3 5.7 91 178-273 142-257 (275)
352 COG1165 MenD 2-succinyl-6-hydr 76.8 63 0.0014 31.0 12.2 79 8-92 372-451 (566)
353 PF13292 DXP_synthase_N: 1-deo 76.1 31 0.00068 29.8 9.3 77 24-102 60-154 (270)
354 CHL00174 accD acetyl-CoA carbo 74.6 11 0.00023 33.2 6.3 89 58-160 147-238 (296)
355 cd07017 S14_ClpP_2 Caseinolyti 73.0 7.2 0.00016 31.3 4.7 76 63-161 21-100 (171)
356 PF00676 E1_dh: Dehydrogenase 70.6 76 0.0017 28.0 11.3 118 58-199 101-228 (300)
357 PF01972 SDH_sah: Serine dehyd 70.2 43 0.00092 29.1 8.8 80 66-169 78-157 (285)
358 TIGR00515 accD acetyl-CoA carb 70.1 14 0.00031 32.3 6.2 91 58-161 134-225 (285)
359 PRK10681 DNA-binding transcrip 69.2 12 0.00025 32.2 5.4 63 13-89 81-144 (252)
360 PF02601 Exonuc_VII_L: Exonucl 68.7 20 0.00044 31.9 7.1 58 61-137 53-114 (319)
361 PLN02269 Pyruvate dehydrogenas 67.9 46 0.00099 30.4 9.1 44 46-91 128-171 (362)
362 PRK12315 1-deoxy-D-xylulose-5- 67.8 1.2E+02 0.0025 29.8 12.5 41 56-97 111-151 (581)
363 PF00574 CLP_protease: Clp pro 66.7 16 0.00034 29.5 5.5 41 123-163 67-109 (182)
364 TIGR03134 malonate_gamma malon 66.7 27 0.00058 29.8 6.9 93 60-161 45-139 (238)
365 COG4799 Acetyl-CoA carboxylase 66.1 77 0.0017 30.4 10.3 142 128-291 357-511 (526)
366 cd07018 S49_SppA_67K_type Sign 65.7 4.2 9.1E-05 34.2 2.0 40 129-169 77-116 (222)
367 PRK05654 acetyl-CoA carboxylas 61.4 25 0.00055 30.9 6.0 90 58-160 135-225 (292)
368 PRK14512 ATP-dependent Clp pro 60.6 30 0.00065 28.5 6.1 69 63-154 35-105 (197)
369 smart00250 PLEC Plectin repeat 58.9 8.5 0.00018 22.2 1.9 18 252-269 18-35 (38)
370 PRK12571 1-deoxy-D-xylulose-5- 58.9 22 0.00048 35.1 5.8 32 57-92 122-153 (641)
371 cd02011 TPP_PK Thiamine pyroph 58.4 9.9 0.00021 32.1 2.9 30 58-91 62-91 (227)
372 TIGR00237 xseA exodeoxyribonuc 58.1 28 0.0006 32.6 6.1 59 60-137 167-226 (432)
373 PRK12319 acetyl-CoA carboxylas 57.6 40 0.00087 29.1 6.5 74 79-164 97-170 (256)
374 TIGR00513 accA acetyl-CoA carb 57.4 32 0.00069 30.6 5.9 74 79-164 150-223 (316)
375 PLN02582 1-deoxy-D-xylulose-5- 56.5 1.2E+02 0.0026 30.3 10.4 35 57-91 143-177 (677)
376 COG1071 AcoA Pyruvate/2-oxoglu 56.2 1.5E+02 0.0033 26.9 10.1 130 47-199 127-264 (358)
377 PRK12553 ATP-dependent Clp pro 54.9 22 0.00047 29.6 4.4 83 58-163 42-128 (207)
378 PRK10906 DNA-binding transcrip 54.6 32 0.00069 29.5 5.5 63 13-89 80-143 (252)
379 PF09364 XFP_N: XFP N-terminal 54.4 13 0.00028 33.5 3.1 30 58-91 140-169 (379)
380 CHL00198 accA acetyl-CoA carbo 52.8 52 0.0011 29.4 6.5 86 66-164 141-226 (322)
381 PRK09802 DNA-binding transcrip 51.6 39 0.00084 29.4 5.6 62 14-89 96-158 (269)
382 PRK10411 DNA-binding transcrip 51.2 38 0.00083 28.8 5.4 60 14-88 83-143 (240)
383 COG1013 PorB Pyruvate:ferredox 50.7 1.8E+02 0.0039 25.7 10.7 33 58-94 70-102 (294)
384 TIGR00204 dxs 1-deoxy-D-xylulo 50.1 2.5E+02 0.0054 27.8 11.4 36 56-91 109-144 (617)
385 PRK05724 acetyl-CoA carboxylas 49.8 34 0.00074 30.5 4.9 74 79-164 150-223 (319)
386 PRK00277 clpP ATP-dependent Cl 49.8 60 0.0013 26.8 6.2 83 58-163 38-124 (200)
387 PLN02225 1-deoxy-D-xylulose-5- 48.7 82 0.0018 31.5 7.8 77 23-102 139-232 (701)
388 COG3959 Transketolase, N-termi 47.6 25 0.00054 29.5 3.5 35 57-91 118-152 (243)
389 PF00681 Plectin: Plectin repe 45.6 7.5 0.00016 23.5 0.2 19 251-269 17-35 (45)
390 PRK13509 transcriptional repre 45.3 54 0.0012 28.1 5.4 60 14-88 83-143 (251)
391 COG0074 SucD Succinyl-CoA synt 45.1 81 0.0018 27.6 6.3 59 68-148 188-246 (293)
392 PLN03230 acetyl-coenzyme A car 44.3 56 0.0012 30.3 5.5 73 79-163 220-292 (431)
393 PRK00286 xseA exodeoxyribonucl 42.9 59 0.0013 30.4 5.8 57 61-137 174-231 (438)
394 PRK11778 putative inner membra 42.3 58 0.0013 29.3 5.2 41 124-164 148-188 (330)
395 PF13607 Succ_CoA_lig: Succiny 41.8 40 0.00086 26.0 3.7 25 66-90 40-64 (138)
396 PLN03229 acetyl-coenzyme A car 40.7 57 0.0012 32.5 5.3 73 79-163 241-313 (762)
397 PLN02522 ATP citrate (pro-S)-l 40.6 2.5E+02 0.0053 27.7 9.5 22 68-89 210-231 (608)
398 TIGR00493 clpP ATP-dependent C 39.4 80 0.0017 25.8 5.4 38 126-163 80-119 (191)
399 PF00549 Ligase_CoA: CoA-ligas 38.5 54 0.0012 25.8 4.0 27 66-92 59-85 (153)
400 COG1349 GlpR Transcriptional r 37.0 1E+02 0.0022 26.5 5.8 43 13-56 80-123 (253)
401 PTZ00187 succinyl-CoA syntheta 35.9 1E+02 0.0022 27.6 5.7 20 128-147 250-269 (317)
402 PTZ00089 transketolase; Provis 35.6 2.8E+02 0.0061 27.7 9.4 35 57-91 115-159 (661)
403 PLN02234 1-deoxy-D-xylulose-5- 35.6 52 0.0011 32.5 4.2 45 57-102 176-220 (641)
404 PRK10434 srlR DNA-bindng trans 34.9 95 0.0021 26.7 5.4 42 14-56 81-123 (256)
405 COG1570 XseA Exonuclease VII, 34.5 1.2E+02 0.0026 28.3 6.1 75 43-137 156-232 (440)
406 cd02017 TPP_E1_EcPDC_like Thia 31.6 59 0.0013 29.9 3.6 43 58-101 118-167 (386)
407 CHL00028 clpP ATP-dependent Cl 31.4 1E+02 0.0023 25.4 4.8 79 61-162 40-122 (200)
408 PRK05261 putative phosphoketol 30.2 53 0.0012 33.2 3.4 30 58-91 142-171 (785)
409 PRK14514 ATP-dependent Clp pro 29.5 1.6E+02 0.0034 24.9 5.6 38 124-161 106-145 (221)
410 PRK12551 ATP-dependent Clp pro 28.6 2.4E+02 0.0053 23.2 6.5 72 60-154 34-107 (196)
411 PRK12552 ATP-dependent Clp pro 28.3 2.5E+02 0.0055 23.6 6.6 78 60-154 49-131 (222)
412 KOG3220|consensus 26.9 77 0.0017 26.4 3.2 65 17-87 48-113 (225)
413 PLN02790 transketolase 25.4 6.5E+02 0.014 25.1 10.0 35 57-91 104-148 (654)
414 PRK14513 ATP-dependent Clp pro 24.3 2E+02 0.0044 23.8 5.3 80 59-161 35-118 (201)
415 PF00456 Transketolase_N: Tran 23.8 1.5E+02 0.0033 26.7 4.8 35 57-91 110-154 (332)
416 PF08759 DUF1792: Domain of un 23.7 1.7E+02 0.0036 24.7 4.6 67 66-134 103-170 (225)
417 TIGR00232 tktlase_bact transke 23.6 6.8E+02 0.015 25.0 9.7 35 57-91 109-153 (653)
418 PRK12754 transketolase; Review 23.3 7.5E+02 0.016 24.8 9.9 35 57-91 113-157 (663)
419 PRK13982 bifunctional SbtC-lik 23.0 1.9E+02 0.0041 27.5 5.4 67 8-90 232-306 (475)
420 PF00191 Annexin: Annexin; In 22.8 1.9E+02 0.0041 18.5 4.1 32 283-314 19-50 (66)
421 COG1154 Dxs Deoxyxylulose-5-ph 22.2 1.3E+02 0.0028 29.4 4.1 46 57-103 114-159 (627)
422 KOG0523|consensus 21.9 1.3E+02 0.0029 29.2 4.2 55 46-101 106-161 (632)
423 PF02601 Exonuc_VII_L: Exonucl 21.4 2.2E+02 0.0047 25.3 5.4 37 177-216 98-135 (319)
424 PRK00286 xseA exodeoxyribonucl 20.0 7E+02 0.015 23.3 8.7 37 177-216 215-252 (438)
No 1
>KOG1680|consensus
Probab=100.00 E-value=2e-43 Score=291.17 Aligned_cols=209 Identities=26% Similarity=0.284 Sum_probs=186.1
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
|+.||||||+.+|++++.+. .+|.+++..+++|+.+.++||||.|+.||+|.||+++......
T Consensus 47 I~lItlNRP~~~Nal~~~~m--------~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~--------- 109 (290)
T KOG1680|consen 47 IALITLNRPKALNALCRATM--------LELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQ--------- 109 (290)
T ss_pred eEEEEeCChHHhccccHHHH--------HHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccc---------
Confidence 89999999999999999887 9999999999999999999999999999999999988541100
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
|.. .. .+ ...+..+.+.+||+|++++|+|
T Consensus 110 -----------------------------------~~~---~~---------~~----~~~~~~~~~~~KPvIaainG~A 138 (290)
T KOG1680|consen 110 -----------------------------------DVS---DG---------IF----LRVWDLVSRLKKPVIAAINGFA 138 (290)
T ss_pred -----------------------------------ccc---cc---------cc----cchhhhhhhcccceeEeeecee
Confidence 000 00 00 1122334489999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|++.||++++++.++|++|+.++|++|.+ ++.+|++.+|.++|++++++|++++++||.++|+|++|+|. ++
T Consensus 139 lgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~-~~ 217 (290)
T KOG1680|consen 139 LGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPS-GD 217 (290)
T ss_pred eccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecc-hh
Confidence 99999999999999999999999999999999998 45899999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l 315 (315)
+.+++.+++++|++.||..++..|+.++.+.+.++.++|
T Consensus 218 ~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l 256 (290)
T KOG1680|consen 218 ALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGL 256 (290)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHH
Confidence 999999999999999999999999999999998887764
No 2
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.3e-42 Score=298.08 Aligned_cols=221 Identities=33% Similarity=0.545 Sum_probs=191.2
Q ss_pred CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573 24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102 (315)
Q Consensus 24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~ 102 (315)
++.+.+.. |+ ++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|.|++++
T Consensus 10 ~~~~~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~ 77 (266)
T PRK08139 10 APLLLREDRDG----VATLTLNRPQAFNALSEAML--------AALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEM 77 (266)
T ss_pred CCceEEEeeCC----EEEEEeCCcccccCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHH
Confidence 34444443 55 88899999999999999998 9999999999999999999999999999999999865
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573 103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI 182 (315)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 182 (315)
.... .. + . ...+...+..++..+
T Consensus 78 ~~~~--------------------------------------~~------~--~-----------~~~~~~~~~~~~~~l 100 (266)
T PRK08139 78 RAAR--------------------------------------GL------A--Y-----------FRALFARCSRVMQAI 100 (266)
T ss_pred hccc--------------------------------------ch------h--H-----------HHHHHHHHHHHHHHH
Confidence 3200 00 0 0 001122234566778
Q ss_pred hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573 183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAY 262 (315)
Q Consensus 183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~ 262 (315)
.++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|.++++.+++++|..++++++++|+.++++||+
T Consensus 101 ~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~ 180 (266)
T PRK08139 101 VALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNVPRKQAMEMLLTGEFIDAATAR 180 (266)
T ss_pred HhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccHHHHHHHhCHHHHHHHHHcCCccCHHHHH
Confidence 89999999999999999999999999999999999999999999999887777899999999999999999999999999
Q ss_pred HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++|||+++++. +++.+.+.+++++|++.||.+++.+|+.+++....+++++
T Consensus 181 ~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~ 231 (266)
T PRK08139 181 EWGLVNRVVPA-DALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADA 231 (266)
T ss_pred HcCCccEeeCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 99999999999 9999999999999999999999999999998877766654
No 3
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.4e-42 Score=294.65 Aligned_cols=210 Identities=26% Similarity=0.361 Sum_probs=183.3
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||||+++|+++..++ .+|.+++++++.|+++|+|||+|.| ++||+|.|++++... . +.
T Consensus 17 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~--~-~~----- 80 (256)
T PRK06143 17 VATLTIRNAGSLNILGTPVI--------LALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL--D-QA----- 80 (256)
T ss_pred EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc--C-hh-----
Confidence 78899999999999999999 9999999999999999999999999 689999999875320 0 00
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
+.. .+...+..++..+.++||||||+|+|+
T Consensus 81 ------------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIAav~G~ 110 (256)
T PRK06143 81 ------------------------------------SAE--------------AFISRLRDLCDAVRHFPVPVIARIPGW 110 (256)
T ss_pred ------------------------------------hHH--------------HHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 000 111223456677889999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
|+|||++|+++||+++++++++|++||.++|+++.++++++++++|..++++++++|+.++++||+++|++++++++ ++
T Consensus 111 a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~ 189 (256)
T PRK06143 111 CLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPL-AE 189 (256)
T ss_pred EeehhHHHHHhCCEEEecCCCEEeCCccccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCH-HH
Confidence 99999999999999999999999999999998433456789999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.+++++++..||.+++.+|+.++.....+++++
T Consensus 190 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~ 227 (256)
T PRK06143 190 LDAAVERLAASLAGCGPQALRQQKRLLREWEDMPLDVA 227 (256)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHH
Confidence 99999999999999999999999999998776666553
No 4
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=7.6e-42 Score=297.03 Aligned_cols=214 Identities=19% Similarity=0.231 Sum_probs=185.9
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++|+|||+|.|+.||+|.|++++......
T Consensus 18 va~itlnrp~~~Nal~~~m~--------~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~--------- 80 (275)
T PRK09120 18 IAWVTLNRPEKRNAMSPTLN--------REMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDA--------- 80 (275)
T ss_pred EEEEEecCcccccCCCHHHH--------HHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhcccc---------
Confidence 88999999999999999998 9999999999999999999999999999999999876320000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+. + ... . ........++..+..+||||||+|+|+|
T Consensus 81 ---------------------------~~------~-~~~-~----------~~~~~~~~~~~~l~~~~kPvIAav~G~a 115 (275)
T PRK09120 81 ---------------------------QP------E-ILQ-E----------RIRREAYGWWRRLRWYQKPTIAMVNGWC 115 (275)
T ss_pred ---------------------------ch------h-HHH-H----------HHHHHHHHHHHHHHhCCCCEEEEEcCEE
Confidence 00 0 000 0 0111223456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus 116 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~-~~ 194 (275)
T PRK09120 116 FGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPL-AQ 194 (275)
T ss_pred echhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCH-HH
Confidence 999999999999999999999999999999999885 4789999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.+++++|+..||.+++.+|+.++.....+++++
T Consensus 195 l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~ 232 (275)
T PRK09120 195 LRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQA 232 (275)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999998877766543
No 5
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-41 Score=293.07 Aligned_cols=208 Identities=21% Similarity=0.271 Sum_probs=182.3
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++ +++|+|||||.|+.||+|.|++++... . +
T Consensus 12 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~--~-~------- 71 (255)
T PRK08150 12 VATIGLNRPAKRNALNDGLI--------AALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRER--D-A------- 71 (255)
T ss_pred EEEEEEcCCccccCCCHHHH--------HHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhc--c-c-------
Confidence 78899999999999999999 99999999987 789999999999999999999876320 0 0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
. +.. .....+..++..+.++|||+||+|+|+|
T Consensus 72 ----------------------------~------~~~--------------~~~~~~~~~~~~l~~~~kPvIaav~G~a 103 (255)
T PRK08150 72 ----------------------------G------EGM--------------HHSRRWHRVFDKIQYGRVPVIAALHGAV 103 (255)
T ss_pred ----------------------------h------hHH--------------HHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 0 000 0111233456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|.++ .+.+++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus 104 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~ 182 (255)
T PRK08150 104 VGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPA-GE 182 (255)
T ss_pred EcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCc-hH
Confidence 999999999999999999999999999999999875 4679999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.+++++|++.+|.+++.+|+.+++....+++++
T Consensus 183 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~ 220 (255)
T PRK08150 183 ALDKAMELARRIAQNAPLTNFAVLNALPRIADMSADDG 220 (255)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999998776666543
No 6
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-41 Score=292.59 Aligned_cols=218 Identities=26% Similarity=0.326 Sum_probs=189.0
Q ss_pred CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573 24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102 (315)
Q Consensus 24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~ 102 (315)
++.+.+.. ++ ++++|||+|+++|+++..++ .+|.+++++++.|+++|+|||+|.|+.||+|.|++++
T Consensus 3 ~~~v~~~~~~~----va~Itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~ 70 (258)
T PRK06190 3 EPILLVETHDR----VRTLTLNRPEARNALSAALR--------RALFAALAEADADDDVDVVVLTGADPAFCAGLDLKEL 70 (258)
T ss_pred CceEEEEeeCC----EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHH
Confidence 44444443 55 78999999999999999998 9999999999999999999999999999999999876
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573 103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI 182 (315)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 182 (315)
... .. . ... . ..+..++..+
T Consensus 71 ~~~---~~-----------------------------------~-------~~~--~-------------~~~~~~~~~i 90 (258)
T PRK06190 71 GGD---GS-----------------------------------A-------YGA--Q-------------DALPNPSPAW 90 (258)
T ss_pred hcc---cc-----------------------------------h-------hhH--H-------------HHHHHHHHHH
Confidence 320 00 0 000 0 0112355678
Q ss_pred hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573 183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA 261 (315)
Q Consensus 183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a 261 (315)
.++|||+||+|+|+|+|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|++++++||
T Consensus 91 ~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA 170 (258)
T PRK06190 91 PAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADA 170 (258)
T ss_pred HhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHH
Confidence 899999999999999999999999999999999999999999999999875 4789999999999999999999999999
Q ss_pred HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+++|+++++++. +++.+.+.+++++|++.||.+++.+|+.++.....+++++
T Consensus 171 ~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~ 222 (258)
T PRK06190 171 LRAGLVTEVVPH-DELLPRARRLAASIAGNNPAAVRALKASYDDGAAAQTGDA 222 (258)
T ss_pred HHcCCCeEecCH-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHH
Confidence 999999999998 9999999999999999999999999999998877776654
No 7
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-41 Score=292.17 Aligned_cols=208 Identities=23% Similarity=0.325 Sum_probs=184.0
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++.+++.|+++|+|||+|.|+.||+|+|++++... ..
T Consensus 14 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~----~~------ 75 (257)
T PRK05862 14 VGLITLNRPKALNALNDALM--------DELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL----SF------ 75 (257)
T ss_pred EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc----ch------
Confidence 78899999999999999998 9999999999999999999999999999999999875310 00
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
. + . +...+...+..+..+|||+||+|+|+|
T Consensus 76 ---------------------------~-------~--~--------------~~~~~~~~~~~l~~~~kpvIaav~G~a 105 (257)
T PRK05862 76 ---------------------------M-------D--V--------------YKGDYITNWEKVARIRKPVIAAVAGYA 105 (257)
T ss_pred ---------------------------h-------H--H--------------HHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence 0 0 0 000111245577899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.++++||+++|+++++++. ++
T Consensus 106 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~ 184 (257)
T PRK05862 106 LGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPA-DK 184 (257)
T ss_pred eHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCH-hH
Confidence 999999999999999999999999999999999885 4789999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.++++++++.+|.++..+|++++.....+++++
T Consensus 185 l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~ 222 (257)
T PRK05862 185 LLDEALAAATTIASFSLPAVMMAKEAVNRAYETTLAEG 222 (257)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999998877776654
No 8
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.4e-41 Score=293.97 Aligned_cols=212 Identities=19% Similarity=0.253 Sum_probs=184.5
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||||+++|+++..++ .+|.++++.++.|+++|+|||+|.|+.||+|.|++++.... +
T Consensus 16 v~~itlnrp~~~Nal~~~~~--------~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~---~------- 77 (265)
T PRK05674 16 FATLWLSRADKNNAFNAQMI--------RELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSA---D------- 77 (265)
T ss_pred EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcc---c-------
Confidence 88899999999999999998 99999999999999999999999999999999998763200 0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
... ..+. .....+..++..+.++|||+|++|+|+|
T Consensus 78 ----------------------------~~~--~~~~---------------~~~~~~~~~~~~l~~~~kPvIaaV~G~a 112 (265)
T PRK05674 78 ----------------------------LDY--NTNL---------------DDARELAELMYNLYRLKIPTLAVVQGAA 112 (265)
T ss_pred ----------------------------ccc--hhhh---------------HHHHHHHHHHHHHHcCCCCEEEEEcCEE
Confidence 000 0000 0011123456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
+|||++|+++||+++++++++|++||.++|++|.+++..+++++|..++++++++|+.++++||+++|+|+++++. +++
T Consensus 113 ~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l 191 (265)
T PRK05674 113 FGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPA-AEL 191 (265)
T ss_pred EechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCH-HHH
Confidence 9999999999999999999999999999999998776678999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573 278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE 313 (315)
Q Consensus 278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~ 313 (315)
.+.+.++++++++.||.+++.+|+.++.....++++
T Consensus 192 ~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~ 227 (265)
T PRK05674 192 EAQVEAWIANLLLNSPQALRASKDLLREVGDGELSP 227 (265)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccChhH
Confidence 999999999999999999999999999887766544
No 9
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-41 Score=292.62 Aligned_cols=215 Identities=24% Similarity=0.321 Sum_probs=184.4
Q ss_pred hhhhhhccCCCcccccC-CCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDA-GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~-~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+++|+++. .++ .+|.+++++++.|+++|+|||+|.|++||+|.|++++...... .
T Consensus 13 v~~itlnrp~~~Nal~~~~~~--------~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~-~------ 77 (266)
T PRK09245 13 IVTLTMNRPETRNALSDNDAV--------DALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGA-F------ 77 (266)
T ss_pred EEEEEECCcccccCCChHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccc-c------
Confidence 88899999999999995 788 9999999999999999999999999999999999876420000 0
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
.+ +.. ... .+...+..++..+.++|||+||+|+|
T Consensus 78 ---------------------------~~-------~~~-----------~~~~~~~~~~~~~~~~l~~~~kpvIaav~G 112 (266)
T PRK09245 78 ---------------------------GG-------SPA-----------DIRQGYRHGIQRIPLALYNLEVPVIAAVNG 112 (266)
T ss_pred ---------------------------cc-------cch-----------hHHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 00 000 000 11112334566788999999999999
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN 274 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~ 274 (315)
+|+|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|++++++||+++|+|+++++.
T Consensus 113 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~- 191 (266)
T PRK09245 113 PAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPA- 191 (266)
T ss_pred EeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCH-
Confidence 99999999999999999999999999999999999875 4789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573 275 EELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE 313 (315)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~ 313 (315)
+++.+.+.+++++|++.||.+++.+|+++++....++++
T Consensus 192 ~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~ 230 (266)
T PRK09245 192 DQLLPAARALAERIAANPPHALRLTKRLLREGQHASLDT 230 (266)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHH
Confidence 999999999999999999999999999999876666654
No 10
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=2.4e-41 Score=290.49 Aligned_cols=210 Identities=19% Similarity=0.258 Sum_probs=184.0
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC-CCccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD-SAFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~-g~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++|+|||+|. |+.||+|+|++++... ...
T Consensus 5 v~~itlnrp~~~Nal~~~~~--------~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~--~~~------ 68 (251)
T PLN02600 5 IVELRLDRPEAKNAIGKEML--------RGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM--SPS------ 68 (251)
T ss_pred EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc--ChH------
Confidence 67789999999999999999 999999999999999999999998 5789999999876320 000
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
+. ..+...+..++..+.++|||+||+|+|+
T Consensus 69 ------------------------------------~~--------------~~~~~~~~~~~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 69 ------------------------------------EV--------------QKFVNSLRSTFSSLEALSIPTIAVVEGA 98 (251)
T ss_pred ------------------------------------HH--------------HHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 00 0112223446667889999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus 99 a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~ 177 (251)
T PLN02600 99 ALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPA-G 177 (251)
T ss_pred ecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeCh-h
Confidence 9999999999999999999999999999999999875 4789999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++.+.+.+++++|++.||.+++.+|+.++.....+++++
T Consensus 178 ~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~ 216 (251)
T PLN02600 178 EAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASG 216 (251)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Confidence 999999999999999999999999999998776666553
No 11
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.6e-41 Score=291.05 Aligned_cols=212 Identities=23% Similarity=0.298 Sum_probs=184.3
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.......+
T Consensus 14 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~------- 78 (262)
T PRK05995 14 VATVTLNRPDVRNAFNETVI--------AELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSD------- 78 (262)
T ss_pred EEEEEEcCcccccCCCHHHH--------HHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCc-------
Confidence 78899999999999999998 999999999999999999999999999999999987632000000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.. .. .....+..++..+.++|||+||+|+|+|
T Consensus 79 ---------------------------~~------~~---------------~~~~~~~~~~~~l~~~~kPvIaav~G~a 110 (262)
T PRK05995 79 ---------------------------DE------NR---------------ADARRLADMLRAIYRCPKPVIARVHGDA 110 (262)
T ss_pred ---------------------------hh------hh---------------hHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 00 00 0011233456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
+|||++|+++||+++++++++|++||.++|++|.+++.++++++|..++++++++|++++++||+++|+++++++. +++
T Consensus 111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l 189 (262)
T PRK05995 111 YAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPA-EAL 189 (262)
T ss_pred EhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCH-HHH
Confidence 9999999999999999999999999999999998877778999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573 278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE 313 (315)
Q Consensus 278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~ 313 (315)
.+.+.++++++++.||.+++.+|+.++.....++++
T Consensus 190 ~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~ 225 (262)
T PRK05995 190 DAKVDELLAALVANSPQAVRAGKRLVRDVAGRPIDA 225 (262)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCChhh
Confidence 999999999999999999999999999876665544
No 12
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-41 Score=291.44 Aligned_cols=214 Identities=22% Similarity=0.287 Sum_probs=185.4
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.| ++||+|.|++++......
T Consensus 13 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~-------- 76 (260)
T PRK05980 13 IALLTLNRPEKLNALNYALI--------DRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAA-------- 76 (260)
T ss_pred EEEEEECCcccccCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccc--------
Confidence 78899999999999999998 9999999999999999999999999 689999999876320000
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
... .+. ..+...+..++..+..+|||+||+|+|+
T Consensus 77 ----------------------------~~~----~~~--------------~~~~~~~~~~~~~l~~~~kPvIaav~G~ 110 (260)
T PRK05980 77 ----------------------------GAD----VAL--------------RDFVRRGQAMTARLEAFPKPVIAAVNGL 110 (260)
T ss_pred ----------------------------cch----hhH--------------HHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 000 000 0122223446667889999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|.+++ +++++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus 111 a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~ 189 (260)
T PRK05980 111 AFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPH-E 189 (260)
T ss_pred EEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCH-H
Confidence 99999999999999999999999999999999998754 789999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++.+.+.++++++++.+|.+++.+|+.+++....+++++
T Consensus 190 ~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~ 228 (260)
T PRK05980 190 ELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSIAEG 228 (260)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999998877666654
No 13
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=3.2e-41 Score=290.51 Aligned_cols=208 Identities=26% Similarity=0.340 Sum_probs=184.2
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.++++++++|+++|+|||+|.|+.||+|.|++++... ..
T Consensus 12 v~~itlnrp~~~Nal~~~~~--------~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~------ 73 (255)
T PRK09674 12 VLLLTLNRPEARNALNNALL--------TQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----DL------ 73 (255)
T ss_pred EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----ch------
Confidence 78899999999999999998 9999999999999999999999999999999999875320 00
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
... +......++..+..+|||+||+|+|+|
T Consensus 74 ------------------------------------~~~--------------~~~~~~~~~~~l~~~~kPvIAav~G~a 103 (255)
T PRK09674 74 ------------------------------------AAT--------------LNDPRPQLWQRLQAFNKPLIAAVNGYA 103 (255)
T ss_pred ------------------------------------hhh--------------HHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 000 000112355677899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus 104 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~ 182 (255)
T PRK09674 104 LGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPP-EL 182 (255)
T ss_pred ehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HH
Confidence 999999999999999999999999999999999885 5789999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.++++++++.||.+++.+|+.+++....+++++
T Consensus 183 ~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~ 220 (255)
T PRK09674 183 TLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAG 220 (255)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence 99999999999999999999999999998877766554
No 14
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-41 Score=291.66 Aligned_cols=224 Identities=21% Similarity=0.292 Sum_probs=191.8
Q ss_pred CCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-Cccccchhh
Q psy12573 22 IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMEL 99 (315)
Q Consensus 22 ~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl 99 (315)
.+++.+.+.. ++ ++++|||+|+++|+++..++ .+|.++++++++|+++++|||+|.| +.||+|+|+
T Consensus 8 ~~~~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl 75 (269)
T PRK06127 8 SPTGKLLAEKTGG----LGRITFNNPARHNAMSLDMW--------EALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADI 75 (269)
T ss_pred CCCCceEEEEECC----EEEEEecCCCccCCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCH
Confidence 3566666654 54 88999999999999999999 9999999999999999999999998 689999999
Q ss_pred hHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHH
Q psy12573 100 ETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLM 179 (315)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (315)
+++..... .+. . ...+......++
T Consensus 76 ~~~~~~~~-~~~--------------------------------------------~-----------~~~~~~~~~~~~ 99 (269)
T PRK06127 76 SQFEESRS-DAE--------------------------------------------A-----------VAAYEQAVEAAQ 99 (269)
T ss_pred HHHhhccc-chH--------------------------------------------H-----------HHHHHHHHHHHH
Confidence 87632000 000 0 001111223456
Q ss_pred HHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCH
Q psy12573 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISA 258 (315)
Q Consensus 180 ~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a 258 (315)
..+..+|||||++|+|+|+|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.+++
T Consensus 100 ~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a 179 (269)
T PRK06127 100 AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDA 179 (269)
T ss_pred HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCH
Confidence 678899999999999999999999999999999999999999999999998874 5789999999999999999999999
Q ss_pred HHHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 259 QDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 259 ~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+||+++|+++++++. +++.+.+.+++++++..+|.+++.+|+.+++....++++.
T Consensus 180 ~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~ 234 (269)
T PRK06127 180 AEALRIGLVHRVTAA-DDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERD 234 (269)
T ss_pred HHHHHcCCCCEeeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 999999999999998 9999999999999999999999999999998877666543
No 15
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.3e-41 Score=283.83 Aligned_cols=210 Identities=18% Similarity=0.212 Sum_probs=183.0
Q ss_pred CCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCch
Q psy12573 31 EGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRP 110 (315)
Q Consensus 31 ~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~ 110 (315)
||.....++++|||+|+ .|+++..++ .+|.+++++++.|+++++|||||.|++||+|+|++++... ...
T Consensus 11 ~~~~~~~i~~itlnrp~-~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~--~~~ 79 (222)
T PRK05869 11 DGSQDAGLATLLLSRPP-TNALTRQVY--------REIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTL--SAQ 79 (222)
T ss_pred cCcccCCEEEEEECCCC-CCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhcc--Chh
Confidence 34445558889999997 599999998 9999999999999999999999999999999999876320 000
Q ss_pred hHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEE
Q psy12573 111 KLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPIL 190 (315)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 190 (315)
+.. .....+..++.++.++|||+|
T Consensus 80 ------------------------------------------~~~--------------~~~~~~~~~~~~i~~~~kPvI 103 (222)
T PRK05869 80 ------------------------------------------EAD--------------TAARVRQQAVDAVAAIPKPTV 103 (222)
T ss_pred ------------------------------------------hHH--------------HHHHHHHHHHHHHHhCCCCEE
Confidence 000 001112346677889999999
Q ss_pred EEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCcccc
Q psy12573 191 AIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITR 269 (315)
Q Consensus 191 a~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~ 269 (315)
|+|+|+|+|||++|+++||+++++++++|++||.++|++|.+++ ..+++++|..++++++++|++++++||+++|++++
T Consensus 104 Aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~ 183 (222)
T PRK05869 104 AAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDE 183 (222)
T ss_pred EEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCE
Confidence 99999999999999999999999999999999999999998854 68999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573 270 VVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS 308 (315)
Q Consensus 270 v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~ 308 (315)
+++. +++.+.+.+++++|+..||.+++.+|+.+++..+
T Consensus 184 vv~~-~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~~~~~ 221 (222)
T PRK05869 184 MVAP-DDVYDAAAAWARRFLDGPPHALAAAKAGISDVYE 221 (222)
T ss_pred eeCc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 9999 9999999999999999999999999999998764
No 16
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-41 Score=289.68 Aligned_cols=209 Identities=19% Similarity=0.224 Sum_probs=182.1
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||||+. |+++..++ .+|.+++.+++.|+++++|||+|.| ++||+|.|++++... +..
T Consensus 13 v~~itlnrp~~-Nal~~~~~--------~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~--~~~------ 75 (258)
T PRK09076 13 VAILTLNNPPA-NTWTADSL--------QALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG--DKA------ 75 (258)
T ss_pred EEEEEECCCCc-CCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc--Chh------
Confidence 78899999975 99999998 9999999999999999999999999 579999999875320 000
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
+.. .+...+..++..+.++||||||+|+|+
T Consensus 76 ------------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIAav~G~ 105 (258)
T PRK09076 76 ------------------------------------VAR--------------EMARRFGEAFEALSAFRGVSIAAINGY 105 (258)
T ss_pred ------------------------------------hHH--------------HHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 000 011123346667889999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|.++ ++++++++|..++++++++|+.++++||+++|+++++++. +
T Consensus 106 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~ 184 (258)
T PRK09076 106 AMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEK-G 184 (258)
T ss_pred EecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCc-h
Confidence 9999999999999999999999999999999999874 5789999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++.+.+.+++++++..+|.+++.+|++++.....++++.
T Consensus 185 ~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~ 223 (258)
T PRK09076 185 EAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAA 223 (258)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999998776666543
No 17
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-41 Score=292.87 Aligned_cols=231 Identities=17% Similarity=0.220 Sum_probs=190.8
Q ss_pred CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573 25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103 (315)
Q Consensus 25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~ 103 (315)
+.+.+.. ++ ++++|||+|+++|++|..++ .+|.+++++++.|+++|+|||+|.|+.||+|+|++++.
T Consensus 6 ~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~ 73 (272)
T PRK06142 6 ESFTVELADH----VAQVTLNRPGKGNAMNPAFW--------SELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMA 73 (272)
T ss_pred ceEEEEecCC----EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHh
Confidence 3444443 55 78899999999999999998 99999999999999999999999999999999998764
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573 104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL 183 (315)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 183 (315)
....... ... ..-+.. ........+..++..+.
T Consensus 74 ~~~~~~~---------------------------------~~~---~~~~~~-----------~~~~~~~~~~~~~~~i~ 106 (272)
T PRK06142 74 GVFGQLG---------------------------------KDG---LARPRT-----------DLRREILRLQAAINAVA 106 (272)
T ss_pred hhccccc---------------------------------ccc---cccchH-----------HHHHHHHHHHHHHHHHH
Confidence 2000000 000 000000 00112233455677888
Q ss_pred cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573 184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAY 262 (315)
Q Consensus 184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~ 262 (315)
.+|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|..++ +++++++|..++++++++|++++++||+
T Consensus 107 ~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~ 186 (272)
T PRK06142 107 DCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAE 186 (272)
T ss_pred hCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHH
Confidence 999999999999999999999999999999999999999999999998754 7899999999999999999999999999
Q ss_pred HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++|||++++++.+++.+.+.+++++|++.||.+++.+|+.+++....+++++
T Consensus 187 ~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~ 238 (272)
T PRK06142 187 KIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVADG 238 (272)
T ss_pred HcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence 9999999998437899999999999999999999999999998776666554
No 18
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-41 Score=289.27 Aligned_cols=218 Identities=19% Similarity=0.289 Sum_probs=188.6
Q ss_pred CCceEEeC--CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhH
Q psy12573 24 DNCIIVGE--GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101 (315)
Q Consensus 24 ~~~~~~~~--g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~ 101 (315)
++.+.+.. ++ ++++|||+|+++|+++..++ .+|.++++++++|+++|+|||+|.|+.||+|.|+++
T Consensus 6 ~~~~~~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~ 73 (261)
T PRK08138 6 TDVVLLERPADG----VALLRLNRPEARNALNMEVR--------QQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKE 73 (261)
T ss_pred CCCEEEEEccCC----EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHH
Confidence 45555543 43 78899999999999999998 999999999999999999999999999999999986
Q ss_pred HhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHH
Q psy12573 102 LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLS 181 (315)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (315)
+... . +.. .+......++..
T Consensus 74 ~~~~----~------------------------------------------~~~--------------~~~~~~~~~~~~ 93 (261)
T PRK08138 74 FATA----G------------------------------------------AIE--------------MYLRHTERYWEA 93 (261)
T ss_pred Hhcc----c------------------------------------------hhH--------------HHHHHHHHHHHH
Confidence 5320 0 000 001112345667
Q ss_pred HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQD 260 (315)
Q Consensus 182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~ 260 (315)
+..+|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|+.++++|
T Consensus 94 l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e 173 (261)
T PRK08138 94 IAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPE 173 (261)
T ss_pred HHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence 7899999999999999999999999999999999999999999999999885 578999999999999999999999999
Q ss_pred HHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 261 AYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 261 a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
|+++|+|+++++. +++.+.+.++++++++.||.+++.+|+.++.....+++++
T Consensus 174 A~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~ 226 (261)
T PRK08138 174 ALAIGLVSEVVED-EQTLPRALELAREIARMPPLALAQIKEVVLAGADAPLDAA 226 (261)
T ss_pred HHHCCCCcEecCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999 9999999999999999999999999999998776666543
No 19
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=5.3e-41 Score=289.53 Aligned_cols=212 Identities=22% Similarity=0.288 Sum_probs=183.1
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.++++++++|+ +++|||+|.|+.||+|.|++++.......
T Consensus 9 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~-------- 71 (256)
T TIGR02280 9 VARLTLNRPDKLNSFTAEMH--------LELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGA-------- 71 (256)
T ss_pred EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccc--------
Confidence 78889999999999999998 99999999999998 99999999999999999998763200000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.++. . .+...+..+++.+..+|||+||+|+|+|
T Consensus 72 ----------------------------------~~~~---~----------~~~~~~~~~~~~l~~~~kPvIaav~G~a 104 (256)
T TIGR02280 72 ----------------------------------PDLG---R----------TIETFYNPLVRRLRALPLPVVCAVNGVA 104 (256)
T ss_pred ----------------------------------hhHH---H----------HHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 0000 0 0001123355678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|++++++||+++|+|+++++. ++
T Consensus 105 ~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~ 183 (256)
T TIGR02280 105 AGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDD-AA 183 (256)
T ss_pred ehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeCh-HH
Confidence 999999999999999999999999999999999875 4689999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.+++++++..||.+++.+|+.++.....+++++
T Consensus 184 l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~ 221 (256)
T TIGR02280 184 LMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQ 221 (256)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHH
Confidence 99999999999999999999999999998776666543
No 20
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-41 Score=290.32 Aligned_cols=211 Identities=18% Similarity=0.152 Sum_probs=181.5
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++.++++|+++|+|||+|.|+.||+|.|++++.... ...
T Consensus 9 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~--~~~------ 72 (255)
T PRK06563 9 VLLIGLDRPAKRNAFDSAML--------DDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKL--AAG------ 72 (255)
T ss_pred EEEEEECCcccccCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhcc--ccc------
Confidence 78899999999999999999 99999999999999999999999999999999998763200 000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
...+ . . ... ..+...+..+||||||+|+|+|
T Consensus 73 ---------------------------~~~~--------~-~----------~~~---~~~~~~l~~~~kPvIAav~G~a 103 (255)
T PRK06563 73 ---------------------------GFPF--------P-E----------GGI---DPWGTVGRRLSKPLVVAVQGYC 103 (255)
T ss_pred ---------------------------hhhh--------h-h----------hhh---HHHHHHHhcCCCCEEEEEcCee
Confidence 0000 0 0 000 1112246789999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|+.++++||+++|+|+++++. ++
T Consensus 104 ~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~ 182 (255)
T PRK06563 104 LTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPP-GE 182 (255)
T ss_pred ecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH-HH
Confidence 999999999999999999999999999999999875 4689999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.++++++++.||.+++.+|+.++.....+++++
T Consensus 183 l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~ 220 (255)
T PRK06563 183 QLERAIELAERIARAAPLGVQATLASARAAVREGEAAA 220 (255)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHH
Confidence 99999999999999999999999999998766666543
No 21
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=7.7e-41 Score=289.31 Aligned_cols=210 Identities=24% Similarity=0.315 Sum_probs=185.0
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.| +.||+|.|++++... ...
T Consensus 14 v~~itlnrp~~~Nal~~~~~--------~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~--~~~------ 77 (260)
T PRK05809 14 IAVVTINRPKALNALNSETL--------KELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL--NEE------ 77 (260)
T ss_pred EEEEEECCCcccCCCCHHHH--------HHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc--ChH------
Confidence 78899999999999999998 9999999999999999999999999 899999999876320 000
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
+.. .+......++..+.++|||+|++|+|+
T Consensus 78 ------------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIaav~G~ 107 (260)
T PRK05809 78 ------------------------------------EGR--------------KFGLLGNKVFRKLENLDKPVIAAINGF 107 (260)
T ss_pred ------------------------------------HHH--------------HHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 000 011112345667889999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|+++ .+++++++|...+++++++|+.++++||+++|+++++++. +
T Consensus 108 a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~ 186 (260)
T PRK05809 108 ALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEP-E 186 (260)
T ss_pred eecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccCh-H
Confidence 9999999999999999999999999999999999885 4789999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++.+.+.+++++++..||.+++.+|+.+++....+++++
T Consensus 187 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~ 225 (260)
T PRK05809 187 KLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTA 225 (260)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999998877666554
No 22
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.3e-41 Score=288.95 Aligned_cols=210 Identities=22% Similarity=0.276 Sum_probs=184.8
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC-ccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~-~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+++|+++..++ .+|.+++.+++.|+++++|||+|.|+ .||+|.|++++... +..
T Consensus 14 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~--~~~------ 77 (260)
T PRK07657 14 VVKITLNRPRAANALSLALL--------EELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM--NEE------ 77 (260)
T ss_pred EEEEEEeCCcccCCCCHHHH--------HHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC--Chh------
Confidence 78889999999999999999 99999999999999999999999995 89999999875320 000
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
+.. .+...+..++..+..+|||+||+|+|+
T Consensus 78 ------------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIaav~G~ 107 (260)
T PRK07657 78 ------------------------------------QVR--------------HAVSLIRTTMEMVEQLPQPVIAAINGI 107 (260)
T ss_pred ------------------------------------hHH--------------HHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 000 111223445667889999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|+++ ++++++++|...+++++++|++++++||+++|+++++++. +
T Consensus 108 a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~ 186 (260)
T PRK07657 108 ALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPA-H 186 (260)
T ss_pred eechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCH-H
Confidence 9999999999999999999999999999999999885 5789999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++.+.+.+++++++..+|.+++.+|+.++.....+++++
T Consensus 187 ~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~ 225 (260)
T PRK07657 187 LLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTG 225 (260)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 999999999999999999999999999998776666543
No 23
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-40 Score=288.32 Aligned_cols=213 Identities=23% Similarity=0.287 Sum_probs=183.5
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++ |+++++|||+|.|+.||+|.|++++......
T Consensus 14 v~~itlnrp~~~Nal~~~~~--------~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~--------- 75 (262)
T PRK08140 14 VATLTLNRPDKLNSFTREMH--------RELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGG--------- 75 (262)
T ss_pred EEEEEecCCcccCCCCHHHH--------HHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccc---------
Confidence 78899999999999999998 99999999999 9999999999999999999999875320000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
... ++.. .+...+..++..+.++|||+||+|+|+|
T Consensus 76 --------------------------~~~------~~~~-------------~~~~~~~~~~~~l~~~~kPvIaav~G~a 110 (262)
T PRK08140 76 --------------------------AMP------DLGE-------------SIETFYNPLVRRLRALPLPVIAAVNGVA 110 (262)
T ss_pred --------------------------cch------hhHH-------------HHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 000 0000 0111123456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus 111 ~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~ 189 (262)
T PRK08140 111 AGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDD-AA 189 (262)
T ss_pred ehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeCh-HH
Confidence 999999999999999999999999999999999875 4789999999999999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.+++++|++.||.++..+|+.++.....+++++
T Consensus 190 l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~ 227 (262)
T PRK08140 190 LADEAQQLAAHLATQPTRGLALIKQAMNASATNTLDAQ 227 (262)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHH
Confidence 99999999999999999999999999998776666543
No 24
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-40 Score=287.59 Aligned_cols=209 Identities=22% Similarity=0.290 Sum_probs=181.8
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.| +.||+|.|++++.... .+
T Consensus 18 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~--~~------ 81 (262)
T PRK06144 18 IARITFNRPAARNAMTWAMY--------EGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS--TA------ 81 (262)
T ss_pred EEEEEecCCcccCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc--ch------
Confidence 88899999999999999888 9999999999999999999999998 5899999998763200 00
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
. +.. .+...+..++..+.++|||+||+|+|+
T Consensus 82 -----------------------------~------~~~--------------~~~~~~~~~~~~l~~~~kPvIaav~G~ 112 (262)
T PRK06144 82 -----------------------------E------DAV--------------AYERRIDRVLGALEQLRVPTIAAIAGA 112 (262)
T ss_pred -----------------------------h------HHH--------------HHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 0 000 011122345667889999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCcc-CCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGAR-HGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN 274 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~-~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~ 274 (315)
|+|||++|+++||+++++++++|++||.+ +|++|.+++ +++++++|..++++++++|+.++++||+++|+|+++++.
T Consensus 113 a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~- 191 (262)
T PRK06144 113 CVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVED- 191 (262)
T ss_pred eeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-
Confidence 99999999999999999999999999996 999998754 789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChh
Q psy12573 275 EELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIE 312 (315)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~ 312 (315)
+++.+.+.+++++|++.||.+++.+|+.++......++
T Consensus 192 ~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~ 229 (262)
T PRK06144 192 AALDARADALAELLAAHAPLTLRATKEALRRLRREGLP 229 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHH
Confidence 99999999999999999999999999999887655443
No 25
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=1.4e-40 Score=287.52 Aligned_cols=218 Identities=25% Similarity=0.363 Sum_probs=187.8
Q ss_pred CCCceEEeC--CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhh
Q psy12573 23 PDNCIIVGE--GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELE 100 (315)
Q Consensus 23 ~~~~~~~~~--g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~ 100 (315)
+++.+.+.. ++ ++.+|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.|++||+|.|++
T Consensus 7 ~~~~i~~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~ 74 (265)
T PLN02888 7 SENLILVPKSRNG----IATITINRPKALNALTRPMM--------VELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLT 74 (265)
T ss_pred CCCeEEEEeccCC----EEEEEEcCCCcccCCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHH
Confidence 456666652 44 78899999999999999998 99999999999999999999999999999999998
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573 101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML 180 (315)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (315)
++.... .+ +... . ....+.
T Consensus 75 ~~~~~~-------------------------------------~~-------~~~~-------------~----~~~~~~ 93 (265)
T PLN02888 75 AAEEVF-------------------------------------KG-------DVKD-------------V----ETDPVA 93 (265)
T ss_pred HHHhhc-------------------------------------cc-------hhhH-------------H----HHHHHH
Confidence 652100 00 0000 0 012344
Q ss_pred HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQ 259 (315)
Q Consensus 181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~ 259 (315)
.+.++|||+||+|+|+|+|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++
T Consensus 94 ~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~ 173 (265)
T PLN02888 94 QMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAE 173 (265)
T ss_pred HHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHH
Confidence 57789999999999999999999999999999999999999999999999875 47899999999999999999999999
Q ss_pred HHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 260 DAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
||+++|+|+++++. +++.+.+.++++++++.+|.+++.+|+.++.....+++++
T Consensus 174 eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~ 227 (265)
T PLN02888 174 TAERWGLVNHVVEE-SELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHA 227 (265)
T ss_pred HHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence 99999999999999 9999999999999999999999999999998776666543
No 26
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-40 Score=287.22 Aligned_cols=213 Identities=23% Similarity=0.309 Sum_probs=186.1
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++.+|||+|+++|+++..++ .+|.++++++++|+++|+|||+|.|+.||+|.|++++.......+
T Consensus 13 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~------- 77 (260)
T PRK07511 13 TLVLTLSNPGARNALHPDMY--------AAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPP------- 77 (260)
T ss_pred EEEEEECCcccccCCCHHHH--------HHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccc-------
Confidence 78899999999999999998 999999999999999999999999999999999987642000000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+ ....+...+..++..+.++|||+||+|+|+|
T Consensus 78 -----------------------------------~-------------~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a 109 (260)
T PRK07511 78 -----------------------------------S-------------VQAASIDGLHDWIRAIRAFPKPVIAAVEGAA 109 (260)
T ss_pred -----------------------------------h-------------hHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 0 0001222344567788899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|+.++++||+++|+++++++. ++
T Consensus 110 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~ 188 (260)
T PRK07511 110 AGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEP-GQ 188 (260)
T ss_pred ehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCc-hH
Confidence 999999999999999999999999999999999875 4789999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.++++++++.+|.++..+|+.++.....+++++
T Consensus 189 ~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~ 226 (260)
T PRK07511 189 ALAEALALADQLAAGSPNALARIKSLIADAPEATLAAQ 226 (260)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHH
Confidence 99999999999999999999999999998776666543
No 27
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=1.4e-40 Score=286.51 Aligned_cols=203 Identities=23% Similarity=0.277 Sum_probs=178.3
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.| +.||+|+|++++... ..
T Consensus 12 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~---~~------ 74 (256)
T TIGR03210 12 IAWIMINRPAKMNAFRGQTC--------DELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG---YD------ 74 (256)
T ss_pred EEEEEEcCCccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc---cc------
Confidence 78899999999999999998 9999999999999999999999999 589999999865210 00
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
.. .. +...+..++..+..+|||+||+|+|+
T Consensus 75 ----------------------------~~--------~~--------------~~~~~~~~~~~l~~~~kPvIaav~G~ 104 (256)
T TIGR03210 75 ----------------------------GR--------GT--------------IGLPMEELHSAIRDVPKPVIARVQGY 104 (256)
T ss_pred ----------------------------ch--------hH--------------HHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 00 00 00012345667889999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|.. +++.+++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus 105 a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~-~ 183 (256)
T TIGR03210 105 AIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPH-D 183 (256)
T ss_pred EehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCH-H
Confidence 999999999999999999999999999999998554 56789999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMS 308 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~ 308 (315)
++.+.+.+++++|++.||.+++.+|++++....
T Consensus 184 ~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~ 216 (256)
T TIGR03210 184 QLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTA 216 (256)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999987643
No 28
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=8.5e-41 Score=290.83 Aligned_cols=222 Identities=23% Similarity=0.301 Sum_probs=185.9
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||||+++|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|+|++++........
T Consensus 18 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~------- 82 (275)
T PLN02664 18 VFHLNLNRPSQRNALSLDFF--------TEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS------- 82 (275)
T ss_pred EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccc-------
Confidence 78899999999999999998 999999999999999999999999999999999987642000000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+. |... .....+.+...+..++..+.++|||+||+|+|+|
T Consensus 83 ---------------------------~~------~~~~-------~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 122 (275)
T PLN02664 83 ---------------------------SG------DRGR-------SGERLRRKIKFLQDAITAIEQCRKPVIAAIHGAC 122 (275)
T ss_pred ---------------------------cc------cchh-------hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcc
Confidence 00 0000 0000011222334567778899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|+.++ +++++++|..++++++++|+.++++||+++|||++++++.++
T Consensus 123 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~ 202 (275)
T PLN02664 123 IGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKED 202 (275)
T ss_pred ccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhH
Confidence 9999999999999999999999999999999998754 689999999999999999999999999999999999983278
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.+++++|+..+|.+++.+|+.+++....+++++
T Consensus 203 l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~ 240 (275)
T PLN02664 203 LDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQG 240 (275)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999998776666553
No 29
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-40 Score=286.24 Aligned_cols=216 Identities=25% Similarity=0.333 Sum_probs=183.9
Q ss_pred CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHH
Q psy12573 25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETL 102 (315)
Q Consensus 25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~ 102 (315)
+.+.+.. ++ ++++|||+|+++|+++..++ .+|.+++.+++.|+++++|||+|.| +.||+|.|++++
T Consensus 4 ~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~ 71 (259)
T PRK06494 4 PFSTVERKGH----VTIVTLNRPEVMNALHLDAH--------FELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQ 71 (259)
T ss_pred ceeEEEeECC----EEEEEEcCccccCCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhH
Confidence 3444443 55 78899999999999999998 9999999999999999999999998 589999999875
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573 103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI 182 (315)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 182 (315)
.... .. +. . .. .+ ..+ ..+
T Consensus 72 ~~~~--~~----------------------------------~~------~-----~~---------~~----~~~-~~~ 90 (259)
T PRK06494 72 AAGG--KR----------------------------------GW------P-----ES---------GF----GGL-TSR 90 (259)
T ss_pred hhcC--cc----------------------------------hh------h-----hH---------HH----HHH-HHH
Confidence 3200 00 00 0 00 00 111 123
Q ss_pred hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573 183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA 261 (315)
Q Consensus 183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a 261 (315)
.++||||||+|+|+|+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|+.++++||
T Consensus 91 ~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA 170 (259)
T PRK06494 91 FDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREG 170 (259)
T ss_pred hcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHH
Confidence 479999999999999999999999999999999999999999999999875 5789999999999999999999999999
Q ss_pred HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+++|+|+++++. +++.+.+.+++++++..||.+++.+|+.+++....+++++
T Consensus 171 ~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~ 222 (259)
T PRK06494 171 LELGFVNEVVPA-GELLAAAERWADDILACSPLSIRASKQAVYRGLEVSLEEA 222 (259)
T ss_pred HHcCCCcEecCH-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHH
Confidence 999999999999 9999999999999999999999999999998776666543
No 30
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-40 Score=287.58 Aligned_cols=211 Identities=19% Similarity=0.234 Sum_probs=181.1
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++.+++.|+++++|||+|.|+.||+|.|++++........
T Consensus 15 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~------- 79 (262)
T PRK07468 15 VATLTLNRPEKHNALSARMI--------AELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADR------- 79 (262)
T ss_pred EEEEEEcCcccccCCCHHHH--------HHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccch-------
Confidence 78899999999999999998 999999999999999999999999999999999987632000000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
... ......+..++..+..+|||+||+|+|+|
T Consensus 80 ---------------------------~~~---------------------~~~~~~~~~~~~~l~~~~kPvIaav~G~a 111 (262)
T PRK07468 80 ---------------------------ATR---------------------IEEARRLAMMLKALNDLPKPLIGRIQGQA 111 (262)
T ss_pred ---------------------------hhH---------------------HHHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 000 00111233466778899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
+|||++|+++||+++++++++|++||.++|++|++++..+.+++|..++++++++|++++++||+++|+|+++++. +++
T Consensus 112 ~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l 190 (262)
T PRK07468 112 FGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPA-ERL 190 (262)
T ss_pred EhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhhccHHHHHHHHHhCCccCHHHHHHcCCcceecCH-HHH
Confidence 9999999999999999999999999999999998865556677999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChh
Q psy12573 278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIE 312 (315)
Q Consensus 278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~ 312 (315)
.+.+.++++++++.+|.++..+|+++++.....++
T Consensus 191 ~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~ 225 (262)
T PRK07468 191 DAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDE 225 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccChH
Confidence 99999999999999999999999999876544433
No 31
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-40 Score=285.86 Aligned_cols=210 Identities=21% Similarity=0.264 Sum_probs=183.5
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+. |+++..++ .+|.+++.+++.|+++++|||+|.|+.||+|.|++++.... ..
T Consensus 12 v~~itl~rp~~-Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~--~~------- 73 (257)
T PRK07658 12 VAVITLNHPPA-NALSSQVL--------HELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVT--EA------- 73 (257)
T ss_pred EEEEEECCCCC-CCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccC--ch-------
Confidence 78899999975 99999998 99999999999999999999999999999999998763200 00
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
-+.. .+......++..+..+|||+||+|+|+|
T Consensus 74 ----------------------------------~~~~--------------~~~~~~~~~~~~l~~~~kpvIAav~G~a 105 (257)
T PRK07658 74 ----------------------------------EQAT--------------ELAQLGQVTFERVEKFSKPVIAAIHGAA 105 (257)
T ss_pred ----------------------------------hhHH--------------HHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence 0000 0111223456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.++++||+++|+++++++. ++
T Consensus 106 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~ 184 (257)
T PRK07658 106 LGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPE-ET 184 (257)
T ss_pred eeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCh-hH
Confidence 999999999999999999999999999999999885 4789999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.++++++++.+|.+++.+|+.++.....+++++
T Consensus 185 l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~ 222 (257)
T PRK07658 185 LLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEG 222 (257)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999998776666553
No 32
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-40 Score=285.74 Aligned_cols=201 Identities=18% Similarity=0.254 Sum_probs=178.6
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|.|++++.....
T Consensus 16 v~~itlnrp~~~Nal~~~~~--------~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~---------- 77 (251)
T PRK06023 16 VQVIRFNRPEKKNAITRAMY--------ATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAM---------- 77 (251)
T ss_pred EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccc----------
Confidence 78899999999999999998 999999999999999999999999999999999987632000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.+..+ ...+..++..+.++|||+||+|+|+|
T Consensus 78 --------------------------~~~~~-----------------------~~~~~~~~~~l~~~~kPvIAav~G~a 108 (251)
T PRK06023 78 --------------------------GGTSF-----------------------GSEILDFLIALAEAEKPIVSGVDGLA 108 (251)
T ss_pred --------------------------cchhh-----------------------HHHHHHHHHHHHhCCCCEEEEeCCce
Confidence 00000 00122355678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|.+++ +++++++|..++++++++|+.++++||+++|+++++++. ++
T Consensus 109 ~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~ 187 (251)
T PRK06023 109 IGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDE-EA 187 (251)
T ss_pred ecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCH-HH
Confidence 9999999999999999999999999999999998854 689999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQ 306 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~ 306 (315)
+.+.+.+++++|+..||.+++.+|+.++..
T Consensus 188 l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 217 (251)
T PRK06023 188 VEAETLKAAEELAAKPPQALQIARDLMRGP 217 (251)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999865
No 33
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-40 Score=285.93 Aligned_cols=214 Identities=19% Similarity=0.255 Sum_probs=185.9
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|++|..++ .+|.+++++++.|+++++|||+|.|+.||+|.|++++.....
T Consensus 12 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~---------- 73 (255)
T PRK07260 12 LATLTLNRPEVSNGFNIPMC--------QEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVD---------- 73 (255)
T ss_pred EEEEEeCCcccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhcc----------
Confidence 78899999999999999999 999999999999999999999999999999999987642000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+. +.... ..+...+..++..+.++|||+||+|+|+|
T Consensus 74 ---------------------------~~------~~~~~-----------~~~~~~~~~~~~~l~~~~kPvIaav~G~a 109 (255)
T PRK07260 74 ---------------------------ED------DVQSL-----------VKIAELVNEISFAIKQLPKPVIMCVDGAV 109 (255)
T ss_pred ---------------------------cc------chhhH-----------HHHHHHHHHHHHHHHcCCCCEEEEecCee
Confidence 00 00000 01112234566678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|..++ +++++++|..++++++++|++++++||+++|+|+++++. ++
T Consensus 110 ~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~-~~ 188 (255)
T PRK07260 110 AGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAES-EK 188 (255)
T ss_pred ehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCH-hH
Confidence 9999999999999999999999999999999998754 689999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.++++++++.+|.+++.+|+.++.....+++++
T Consensus 189 l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~ 226 (255)
T PRK07260 189 LEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDY 226 (255)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHH
Confidence 99999999999999999999999999998876666543
No 34
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-40 Score=286.48 Aligned_cols=213 Identities=23% Similarity=0.282 Sum_probs=182.1
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|.|++++.... .
T Consensus 15 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~------- 76 (263)
T PRK07799 15 TLIVTMNRPEARNALSTEML--------RIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKP---P------- 76 (263)
T ss_pred EEEEEECCCcccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhcc---c-------
Confidence 78899999999999999999 99999999999999999999999999999999998764200 0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+..+ .. .. .. ...+..+ ..+..+||||||+|+|+|
T Consensus 77 ---------------------------~~~~------~~--~~-------~~--~~~~~~~-~~~~~~~kpvIaav~G~a 111 (263)
T PRK07799 77 ---------------------------GDSF------KD--GS-------YD--PSRIDAL-LKGRRLTKPLIAAVEGPA 111 (263)
T ss_pred ---------------------------cchh------hh--hh-------hh--hhHHHHH-HHHhcCCCCEEEEECCeE
Confidence 0000 00 00 00 0011122 246789999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus 112 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~ 190 (263)
T PRK07799 112 IAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPD-GQ 190 (263)
T ss_pred eccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCc-ch
Confidence 999999999999999999999999999999999875 4689999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.++++++++.||.+++.+|+.++.....+++++
T Consensus 191 l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~ 228 (263)
T PRK07799 191 ALDKALELAELINANGPLAVQAILRTIRETEGMHENEA 228 (263)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHH
Confidence 99999999999999999999999999998776666543
No 35
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-40 Score=284.89 Aligned_cols=208 Identities=24% Similarity=0.294 Sum_probs=180.0
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|.|++++.... .
T Consensus 13 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~---~------- 74 (254)
T PRK08259 13 VTTVILNRPEVRNAVDGPTA--------AALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGR---G------- 74 (254)
T ss_pred EEEEEecCCccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhccc---c-------
Confidence 88899999999999999999 99999999999999999999999999999999998753200 0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
... . .. . .. ........+|||+|++|+|+|
T Consensus 75 ----------------------------~~~------~---~~---~----~~------~~~~~~~~~~kPvIaav~G~a 104 (254)
T PRK08259 75 ----------------------------NRL------H---PS---G----DG------PMGPSRMRLSKPVIAAVSGYA 104 (254)
T ss_pred ----------------------------hhh------h---hh---h----cc------hhhhHHhcCCCCEEEEECCEE
Confidence 000 0 00 0 00 000112368999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|..+ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus 105 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~ 183 (254)
T PRK08259 105 VAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPK-GQ 183 (254)
T ss_pred EhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeCh-hH
Confidence 999999999999999999999999999999998874 5789999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus 184 l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~ 221 (254)
T PRK08259 184 ARAAAEELAAELAAFPQTCLRADRLSALEQWGLPEEAA 221 (254)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence 99999999999999999999999999998776666654
No 36
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-40 Score=287.68 Aligned_cols=214 Identities=23% Similarity=0.291 Sum_probs=185.0
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|.|++++......
T Consensus 27 v~~itlnrp~~~Nal~~~~~--------~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~--------- 89 (277)
T PRK08258 27 VATITLNRPERKNPLTFESY--------AELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTK--------- 89 (277)
T ss_pred EEEEEeCCcccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccc---------
Confidence 88899999999999999988 9999999999999999999999999999999999876320000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
. +.. +...+...+..++..+.++||||||+|+|+|
T Consensus 90 ----------------------------~------~~~-----------~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 124 (277)
T PRK08258 90 ----------------------------M------DMP-----------ELLAFTRMTGDLVKAMRACPQPIIAAVDGVC 124 (277)
T ss_pred ----------------------------c------Chh-----------HHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 0 000 0001122234566788899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCC-Cc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFC-ST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~-~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
+|||++|+++||+++++++++|++||.++|++| ++ +.+++++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus 125 ~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~ 203 (277)
T PRK08258 125 AGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEP-E 203 (277)
T ss_pred ehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCH-H
Confidence 999999999999999999999999999999995 55 45789999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++.+.+.+++++|+..||.+++.+|+.++.....++++.
T Consensus 204 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~ 242 (277)
T PRK08258 204 ELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEA 242 (277)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHH
Confidence 999999999999999999999999999998877666553
No 37
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-40 Score=284.15 Aligned_cols=206 Identities=23% Similarity=0.310 Sum_probs=179.8
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++.+++.|+++++|||+|.|+.||+|.|++++... ..+
T Consensus 13 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~--~~~------- 75 (254)
T PRK08252 13 VLIITINRPEARNAVNAAVA--------QGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARG--ERP------- 75 (254)
T ss_pred EEEEEECCCcccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcc--cch-------
Confidence 78899999999999999999 9999999999999999999999999999999999876320 000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
..+ .. . +..++ ...+|||||++|+|+|
T Consensus 76 ----------------------------~~~----------~~---------~----~~~~~--~~~~~kPvIaav~G~a 102 (254)
T PRK08252 76 ----------------------------SIP----------GR---------G----FGGLT--ERPPRKPLIAAVEGYA 102 (254)
T ss_pred ----------------------------hhh----------HH---------H----HHHHH--HhcCCCCEEEEECCEE
Confidence 000 00 0 01111 1468999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|++++++||+++|+++++++. ++
T Consensus 103 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~ 181 (254)
T PRK08252 103 LAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEP-GQ 181 (254)
T ss_pred ehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCc-ch
Confidence 999999999999999999999999999999999875 5789999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.+++++++..||.+++.+|++++.....+++++
T Consensus 182 l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~ 219 (254)
T PRK08252 182 ALDAALELAERIAANGPLAVAASKRIVVESGDWSEDEM 219 (254)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence 99999999999999999999999999998766666543
No 38
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-40 Score=288.04 Aligned_cols=216 Identities=22% Similarity=0.300 Sum_probs=182.6
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++|+|||+|.|+.||+|.|++++... +..
T Consensus 20 v~~itlnrp~~~Nal~~~~~--------~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~----~~~----- 82 (276)
T PRK05864 20 IALITLNRPERMNSMAFDVM--------VPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVV----PHV----- 82 (276)
T ss_pred EEEEEecCCccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcc----ccc-----
Confidence 78899999999999999998 9999999999999999999999999999999999865310 000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.+ . .+... .......+..++..+.++|||||++|+|+|
T Consensus 83 --------------------------~~--~---~~~~~-----------~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 120 (276)
T PRK05864 83 --------------------------EG--L---TRPTY-----------ALRSMELLDDVILALRRLHQPVIAAVNGPA 120 (276)
T ss_pred --------------------------cc--c---cchhH-----------HHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 00 0 00000 001112234456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCC-Cch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFC-STP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~-~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
+|||++|+++||+++++++++|++||.++|++| .++ .+++++++|..++++++++|++++++||+++|+|+++++. +
T Consensus 121 ~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~-~ 199 (276)
T PRK05864 121 IGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-E 199 (276)
T ss_pred ehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCH-H
Confidence 999999999999999999999999999999997 554 4679999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCC-Chhh
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSL-NIEE 313 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~-~l~~ 313 (315)
++.+.+.+++++|+..||.+++.+|+.++..... ++++
T Consensus 200 ~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~ 238 (276)
T PRK05864 200 QLLDTCYAIAARMAGFSRPGIELTKRTLWSGLDAASLEA 238 (276)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHH
Confidence 9999999999999999999999999999876554 4543
No 39
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-40 Score=284.49 Aligned_cols=208 Identities=21% Similarity=0.217 Sum_probs=180.7
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.++++.++.|+++++|||+|.|+.||+|.|++++..... .
T Consensus 13 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~--~------- 75 (249)
T PRK05870 13 VALITVNDPDRRNAVTAEMS--------AQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPG--R------- 75 (249)
T ss_pred EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccc--c-------
Confidence 78899999999999999998 999999999999999999999999999999999987642000 0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+.. .....+...+..+.++|||+|++|+|+|
T Consensus 76 -----------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIaav~G~a 106 (249)
T PRK05870 76 -----------------------------------PAE--------------DGLRRIYDGFLAVASCPLPTIAAVNGAA 106 (249)
T ss_pred -----------------------------------chH--------------HHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 000 0011122345567899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|.+++ +++++++|..++++++++|+.++++||+++|++++++ ++
T Consensus 107 ~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv---~~ 183 (249)
T PRK05870 107 VGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA---DD 183 (249)
T ss_pred EchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH---hh
Confidence 9999999999999999999999999999999998754 6799999999999999999999999999999999999 46
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC-CChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMS-LNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~-~~l~~~ 314 (315)
+.+.+.++++++++.||.+++.+|+.+++... .+++++
T Consensus 184 l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~ 222 (249)
T PRK05870 184 PVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAA 222 (249)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHH
Confidence 88999999999999999999999999998766 566543
No 40
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-40 Score=287.24 Aligned_cols=204 Identities=19% Similarity=0.215 Sum_probs=179.3
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++.+|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|.|++++.....+ +.
T Consensus 22 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~------ 86 (268)
T PRK07327 22 VLEIVLNGPGALNAADARMH--------RELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADD-FE------ 86 (268)
T ss_pred EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCc-HH------
Confidence 78899999999999999998 9999999999999999999999999999999999876320000 00
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.. .........++..+..+|||+||+|+|+|
T Consensus 87 --------------------------------------~~-----------~~~~~~~~~~~~~l~~~~kPvIAav~G~a 117 (268)
T PRK07327 87 --------------------------------------VR-----------ARVWREARDLVYNVINCDKPIVSAIHGPA 117 (268)
T ss_pred --------------------------------------HH-----------HHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 00 01112223456677899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|+.+ .+++++++|..++++++++|++++++||+++|+|+++++. ++
T Consensus 118 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~ 196 (268)
T PRK07327 118 VGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-DE 196 (268)
T ss_pred eehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCH-HH
Confidence 999999999999999999999999999999998874 4789999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQ 306 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~ 306 (315)
+.+.+.+++++|++.||.+++.+|+.++..
T Consensus 197 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 226 (268)
T PRK07327 197 LLPKALEVAERLAAGSQTAIRWTKYALNNW 226 (268)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999865
No 41
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=3.8e-40 Score=284.79 Aligned_cols=208 Identities=23% Similarity=0.364 Sum_probs=180.2
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+ .|+++..++ .+|.+++++++.|+++++|||+|.| ++||+|.|++++.... ..
T Consensus 13 v~~itlnrp~-~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~--~~------ 75 (261)
T PRK03580 13 ILEITLDRPK-ANAIDAKTS--------FAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE--AP------ 75 (261)
T ss_pred EEEEEECCcc-ccCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC--cc------
Confidence 8889999994 699999998 9999999999999999999999999 5899999998763200 00
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
.. ++ . . . ....+..+..+|||+||+|+|+
T Consensus 76 ----------------------------~~------~~--~-~----------~----~~~~~~~l~~~~kPvIaav~G~ 104 (261)
T PRK03580 76 ----------------------------DA------DF--G-P----------G----GFAGLTEIFDLDKPVIAAVNGY 104 (261)
T ss_pred ----------------------------hh------hh--h-h----------h----hhHHHHHHHhCCCCEEEEECCe
Confidence 00 00 0 0 0 0113446778999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|++++ +.+++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus 105 a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~ 183 (261)
T PRK03580 105 AFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ-A 183 (261)
T ss_pred eehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCH-h
Confidence 99999999999999999999999999999999998754 689999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++.+.+.+++++|++.+|.+++.+|+.++.....+++++
T Consensus 184 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~ 222 (261)
T PRK03580 184 ELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEA 222 (261)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999998776666543
No 42
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.8e-40 Score=281.58 Aligned_cols=207 Identities=19% Similarity=0.224 Sum_probs=184.2
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
+++++||+|+++|+++..++ .+|.+++.+++.|+++|+|||+|+|+.||+|+|++++....
T Consensus 15 v~~i~ln~p~~~Nal~~~~~--------~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~----------- 75 (249)
T PRK07110 15 IAQVTMQDRVNKNAFSDELC--------DQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQ----------- 75 (249)
T ss_pred EEEEEecCCCccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhcc-----------
Confidence 78899999999999999998 99999999999999999999999999999999998653200
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.+ +. .+.. ..++..+.++|||+||+|+|+|
T Consensus 76 --------------------------~~-------~~---------------~~~~--~~~~~~l~~~~kPvIaav~G~a 105 (249)
T PRK07110 76 --------------------------TG-------KG---------------TFTE--ANLYSLALNCPIPVIAAMQGHA 105 (249)
T ss_pred --------------------------ch-------hh---------------hHhh--HHHHHHHHcCCCCEEEEecCce
Confidence 00 00 0000 2355678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|..+ .+++++++|..++++++++|++++++||+++|+++++++. ++
T Consensus 106 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~ 184 (249)
T PRK07110 106 IGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPR-AE 184 (249)
T ss_pred echHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeCh-HH
Confidence 999999999999999999999999999999999875 5789999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.++++++++.||.+++.+|+.+++....++++.
T Consensus 185 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~ 222 (249)
T PRK07110 185 VLEKALELARSLAEKPRHSLVLLKDHLVADRRRRLPEV 222 (249)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHH
Confidence 99999999999999999999999999998877776654
No 43
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-40 Score=282.61 Aligned_cols=209 Identities=24% Similarity=0.300 Sum_probs=180.9
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+ .|++++.++ .+|.++++++++|+++|+|||+|.|+.||+|+|++++...... +
T Consensus 14 v~~itlnrp~-~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~-~------- 76 (257)
T PRK06495 14 VAVVTLDNPP-VNALSRELR--------DELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKG-P------- 76 (257)
T ss_pred EEEEEECCCc-cccCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCC-c-------
Confidence 8889999997 699999999 9999999999999999999999999999999999875320000 0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
. +.. .....+..++..+..+|||+||+|+|+|
T Consensus 77 ----------------------------~------~~~--------------~~~~~~~~~~~~l~~~~kPvIAav~G~a 108 (257)
T PRK06495 77 ----------------------------G------DLR--------------AHNRRTRECFHAIRECAKPVIAAVNGPA 108 (257)
T ss_pred ----------------------------h------hHH--------------HHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 0 000 1111223456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
+|||++|+++||+++++++++|++||.++|+. ++.+.+++++|..++++++++|+.++++||+++||++++++. +++
T Consensus 109 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~--~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~~ 185 (257)
T PRK06495 109 LGAGLGLVASCDIIVASENAVFGLPEIDVGLA--GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPP-EEL 185 (257)
T ss_pred ehhHHHHHHhCCEEEecCCCEeeChhhccCcc--ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCH-HHH
Confidence 99999999999999999999999999999997 344678999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
.+.+.++++++++.||.+++.+|+.++.....+++++
T Consensus 186 ~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~ 222 (257)
T PRK06495 186 MPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDG 222 (257)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999998777666654
No 44
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-40 Score=283.77 Aligned_cols=209 Identities=26% Similarity=0.367 Sum_probs=185.3
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|.|++++.... .
T Consensus 15 v~~i~lnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~---~------- 76 (259)
T PRK06688 15 VLTITINRPDKKNALTAAMY--------QALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAP---P------- 76 (259)
T ss_pred EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccC---c-------
Confidence 78889999999999999998 99999999999999999999999999999999998764200 0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
. + . .+...+..++..+.++|||+||+|+|+|
T Consensus 77 ----------------------------~------~-~--------------~~~~~~~~~~~~l~~~~kp~Iaav~G~a 107 (259)
T PRK06688 77 ----------------------------K------P-P--------------DELAPVNRFLRAIAALPKPVVAAVNGPA 107 (259)
T ss_pred ----------------------------c------h-H--------------HHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 0 0 0 0111233466678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|+.++++||+++|+|+++++. ++
T Consensus 108 ~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~ 186 (259)
T PRK06688 108 VGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPA-AE 186 (259)
T ss_pred ecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCH-HH
Confidence 999999999999999999999999999999999875 4789999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.++++++++.+|.+++.+|+.+++....+++++
T Consensus 187 l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~ 224 (259)
T PRK06688 187 LDAEADAQAAKLAAGPASALRYTKRAINAATLTELEEA 224 (259)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHH
Confidence 99999999999999999999999999998877776654
No 45
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-40 Score=283.59 Aligned_cols=209 Identities=19% Similarity=0.245 Sum_probs=182.4
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.++++++ .|+++++|||+|.|+.||+|.|++++.... ..
T Consensus 16 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~--~~------- 77 (260)
T PRK07659 16 VATIMLNRPEALNALDEPML--------KELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSN--DE------- 77 (260)
T ss_pred EEEEEeCCcccccCCCHHHH--------HHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhcc--Cc-------
Confidence 78899999999999999998 9999999999 588999999999999999999998763200 00
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
. +. ..+...+..++..+..+|||+||+|+|+|
T Consensus 78 ----------------------------~------~~--------------~~~~~~~~~~~~~l~~~~~pvIaav~G~a 109 (260)
T PRK07659 78 ----------------------------S------KF--------------DGVMNTISEIVVTLYTMPKLTISAIHGPA 109 (260)
T ss_pred ----------------------------h------hH--------------HHHHHHHHHHHHHHHhCCCCEEEEecCce
Confidence 0 00 01122234566778899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++||+++|++++++ . ++
T Consensus 110 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~-~~ 187 (260)
T PRK07659 110 AGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-G-GD 187 (260)
T ss_pred ecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-h-hH
Confidence 999999999999999999999999999999999874 57899999999999999999999999999999999999 7 89
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.+++++|++.||.+++.+|+.++.....+++++
T Consensus 188 ~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~ 225 (260)
T PRK07659 188 FQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQLEQV 225 (260)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHH
Confidence 99999999999999999999999999998776666543
No 46
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=5.5e-40 Score=305.26 Aligned_cols=268 Identities=16% Similarity=0.158 Sum_probs=219.9
Q ss_pred hhhhhhccCC----------CcccccCCCCccccchHHHHHHHHHHhhh-cCCCCeEEEEEcC-CCccccchhhhHHhhh
Q psy12573 38 IGRSLLLNNL----------PRHRLDAGTFGTMGVGLGFALAAALYCNH-YAPGKRVVCVQGD-SAFGFSGMELETLAVD 105 (315)
Q Consensus 38 ~~~~~l~~~~----------~~n~~~~~~~~~mg~~~~~~l~~~l~~~~-~d~~~~vvvl~g~-g~~~~aG~Dl~~~~~~ 105 (315)
++++|||+|+ ++|+++..++ .+|.+++++++ .|+++|+|||||. |++||+|+|++++...
T Consensus 21 Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l--------~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~ 92 (546)
T TIGR03222 21 VATLTMDVDEDGGLRPGYKLKLNSYDLGVD--------IELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLS 92 (546)
T ss_pred EEEEEEecccccccCccccccCCCCCHHHH--------HHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhcc
Confidence 8889999986 7899999988 99999999999 7899999999987 5789999999987431
Q ss_pred ccC-chhHHHHHH-HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh--cCCCCcchh--hHHHHH----
Q psy12573 106 KEG-RPKLDEIFS-TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGYN--ILVSTC---- 175 (315)
Q Consensus 106 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~--~~~~~~~~~--~~~~~~---- 175 (315)
... ......... ..+.+...+..+++|+|++|||.++|+|..+++.||++++++. ++|+.|+.+ ++.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~ 172 (546)
T TIGR03222 93 THAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLT 172 (546)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhh
Confidence 110 001111111 1223444567899999999999999999999999999988764 455444420 111110
Q ss_pred --------------------------------------------------------------------------------
Q psy12573 176 -------------------------------------------------------------------------------- 175 (315)
Q Consensus 176 -------------------------------------------------------------------------------- 175 (315)
T Consensus 173 ~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~~~~~~~~~~~~~~~~~~~~~ 252 (546)
T TIGR03222 173 RVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDRPADAKGVQLTPLERTIDEDG 252 (546)
T ss_pred hccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCCCcCCCceeeeehhhhcccCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy12573 176 -------------------------------------------------------------------------------- 175 (315)
Q Consensus 176 -------------------------------------------------------------------------------- 175 (315)
T Consensus 253 ~~~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~a 332 (546)
T TIGR03222 253 VRYPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVL 332 (546)
T ss_pred cceeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceec
Confidence
Q ss_pred ----------------------HHHHHHHhcCCCcEEEEE-ccccchhh-hHHHhhcCeeee-------eCCceeeCCCc
Q psy12573 176 ----------------------SDLMLSILRHPVPILAII-SGVAAAAG-CQLVATCDLAIA-------TTASKFSTPGA 224 (315)
Q Consensus 176 ----------------------~~~~~~l~~~~kpvIa~v-~G~~~g~G-~~l~l~~d~~~a-------~~~a~~~~pe~ 224 (315)
..++..+..+|||+||+| +|+|+||| ++|+++||++++ +++++|++||.
T Consensus 333 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~ 412 (546)
T TIGR03222 333 AADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL 412 (546)
T ss_pred CcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence 112334567899999999 89999999 999999999999 89999999999
Q ss_pred cCCCCCCch-HHHHhhhc-CHHHH--HHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12573 225 RHGIFCSTP-AVALTRKV-PLGVV--RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGK 300 (315)
Q Consensus 225 ~~Gl~~~~~-~~~l~~~~-g~~~a--~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k 300 (315)
++|++|+++ .++|++++ |..++ ++++++|+.++++||+++||++++++. +++.+.+.+++++|+..||.+++.+|
T Consensus 413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K 491 (546)
T TIGR03222 413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD-IDWEDEIRIALEERASFSPDALTGLE 491 (546)
T ss_pred ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCc-hHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999875 47899998 99888 569999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhhCCChhhh
Q psy12573 301 QFLYQQMSLNIEEA 314 (315)
Q Consensus 301 ~~l~~~~~~~l~~~ 314 (315)
+.++.....+++++
T Consensus 492 ~~l~~~~~~~~~~~ 505 (546)
T TIGR03222 492 ANLRFAGPETMETR 505 (546)
T ss_pred HHHhhcCCcChhhh
Confidence 99999888887765
No 47
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-40 Score=285.80 Aligned_cols=220 Identities=20% Similarity=0.213 Sum_probs=184.8
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|.|++++.... ..+.
T Consensus 16 v~~itlnrp~~~Nal~~~~~--------~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~--~~~~----- 80 (272)
T PRK06210 16 VAVITLNRPDRLNAWTPVME--------AEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTID--PSDG----- 80 (272)
T ss_pred EEEEEeCCcccccCCCHHHH--------HHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccC--cccc-----
Confidence 78899999999999999998 99999999999999999999999999999999998764210 0000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
. ...+...+. ......+...+..+.++||||||+|+|+|
T Consensus 81 ----------------------------~---~~~~~~~~~----------~~~~~~~~~~~~~l~~~~kPvIaav~G~a 119 (272)
T PRK06210 81 ----------------------------R---RDTDVRPFV----------GNRRPDYQTRYHFLTALRKPVIAAINGAC 119 (272)
T ss_pred ----------------------------c---ccccchhhh----------hhhhhhHHHHHHHHHhCCCCEEEEECCee
Confidence 0 000000000 00011123455678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|++++ +.+++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus 120 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~ 198 (272)
T PRK06210 120 AGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPP-DE 198 (272)
T ss_pred ehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCH-HH
Confidence 9999999999999999999999999999999998854 679999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILEN-SRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~-~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.++++++++. +|.++..+|+.+++....+++++
T Consensus 199 l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~ 237 (272)
T PRK06210 199 LMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQTLAEA 237 (272)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHH
Confidence 999999999999985 99999999999998776666554
No 48
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=7.6e-40 Score=282.43 Aligned_cols=205 Identities=24% Similarity=0.257 Sum_probs=178.3
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+++|+++..++ .+|.++++.++.|+++|+|||||.| +.||+|+|++++..... .
T Consensus 13 v~~itlnrp~~~Nal~~~~~--------~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~--~------ 76 (259)
T TIGR01929 13 IAKITINRPQVRNAFRPLTV--------KEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGY--I------ 76 (259)
T ss_pred EEEEEecCCccccCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccc--c------
Confidence 78899999999999999998 9999999999999999999999999 68999999976521000 0
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
.. +. . ... ....++..+..+|||+||+|+|+
T Consensus 77 ---------------------------~~-------~~-----~--------~~~--~~~~~~~~l~~~~kPvIAav~G~ 107 (259)
T TIGR01929 77 ---------------------------DD-------SG-----V--------HRL--NVLDVQRQIRTCPKPVIAMVNGY 107 (259)
T ss_pred ---------------------------ch-------hh-----H--------HHH--HHHHHHHHHHhCCCCEEEEEcCE
Confidence 00 00 0 000 11235567789999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|.+ +++++++++|..++++++++|++++++||+++|+++++++. +
T Consensus 108 a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~ 186 (259)
T TIGR01929 108 AIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPL-A 186 (259)
T ss_pred EehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCH-H
Confidence 999999999999999999999999999999999876 55789999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMS 308 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~ 308 (315)
++.+.+.+++++|++.||.+++.+|++++....
T Consensus 187 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~ 219 (259)
T TIGR01929 187 DLEKETVRWCREILQKSPMAIRMLKAALNADCD 219 (259)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999987643
No 49
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-39 Score=283.10 Aligned_cols=215 Identities=20% Similarity=0.225 Sum_probs=183.8
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCC-CeEEEEEcCCCccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPG-KRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~-~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+++|+++..++ .+|.++++.++.|++ +++|||+|.|++||+|.|++++..... .
T Consensus 14 i~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~--~------ 77 (266)
T PRK05981 14 VAILTLDHPEVMNAVSIDML--------GGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGR--E------ 77 (266)
T ss_pred EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccc--c------
Confidence 88899999999999999998 999999999998764 999999999999999999987632000 0
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
... +.+.. ..+...+..++..+..+|||||++|+|+
T Consensus 78 -----------------------------~~~--~~~~~-------------~~~~~~~~~~~~~l~~~~kpvIaav~G~ 113 (266)
T PRK05981 78 -----------------------------SDS--GGDAG-------------AALETAYHPFLRRLRNLPCPIVTAVNGP 113 (266)
T ss_pred -----------------------------ccc--cchhH-------------HHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 000 00000 0111223456678889999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|++++ +.+++++|...+++++++|+.++++||+++|+|+++++. +
T Consensus 114 a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~ 192 (266)
T PRK05981 114 AAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDD-A 192 (266)
T ss_pred eehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-h
Confidence 99999999999999999999999999999999998854 789999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE 313 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~ 313 (315)
++.+.+.+++++++..||.+++.+|++++.....++++
T Consensus 193 ~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~ 230 (266)
T PRK05981 193 ELMAEAMKLAHELANGPTVALGLIRKLYWDSPENDFEE 230 (266)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHH
Confidence 99999999999999999999999999998876666554
No 50
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.4e-40 Score=280.73 Aligned_cols=208 Identities=22% Similarity=0.336 Sum_probs=179.5
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+ .|+++..++ .+|.+++.+++.|+++|+|||+|.|+.||+|.|++++... .
T Consensus 12 v~~itlnrp~-~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~----~------- 71 (249)
T PRK07938 12 IAEVTVDYPP-VNALPSAGW--------FALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT----P------- 71 (249)
T ss_pred EEEEEECCCC-cccCCHHHH--------HHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc----c-------
Confidence 7788999997 599999998 9999999999999999999999999999999999865320 0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+.... ......+...+..+.++|||+||+|+|+|
T Consensus 72 -----------------------------------~~~~~-----------~~~~~~~~~~~~~i~~~~kPvIAav~G~a 105 (249)
T PRK07938 72 -----------------------------------GFTAL-----------IDANRGCFAAFRAVYECAVPVIAAVHGFC 105 (249)
T ss_pred -----------------------------------chhHH-----------HHHHHHHHHHHHHHHhCCCCEEEEEcCEE
Confidence 00000 00011123456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
+|||++|+++||+++++++++|++||.++|++ .+...+++++|...+++++++|+.++++||+++|+++++++. +++
T Consensus 106 ~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~--g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l 182 (249)
T PRK07938 106 LGGGIGLVGNADVIVASDDATFGLPEVDRGAL--GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPR-DQL 182 (249)
T ss_pred eehHHHHHHhCCEEEEeCCCEeeCccceecCc--hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCH-HHH
Confidence 99999999999999999999999999999997 344679999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
.+.+.+++++|+..+|.+++.+|+.++.....++++.
T Consensus 183 ~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~ 219 (249)
T PRK07938 183 DEAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERS 219 (249)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHH
Confidence 9999999999999999999999999998766666543
No 51
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.8e-40 Score=285.20 Aligned_cols=240 Identities=23% Similarity=0.278 Sum_probs=187.3
Q ss_pred CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573 25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103 (315)
Q Consensus 25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~ 103 (315)
+.+.+.. ++ ++++|||+|+++|+++..++ .+|.+++.+++.|+++++|||+|.|+.||+|+|++++.
T Consensus 4 ~~v~~~~~~~----Va~ItlnrP~~~Nal~~~~~--------~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~ 71 (288)
T PRK08290 4 EYVRYEVAGR----IARITLNRPEARNAQNRQML--------YELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGT 71 (288)
T ss_pred ceEEEEeeCC----EEEEEecCccccCCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccc
Confidence 3444443 54 78899999999999999998 99999999999999999999999999999999998753
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573 104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL 183 (315)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 183 (315)
......+. ..+.|.... .+ +.. .+. .. ........+..++..+.
T Consensus 72 ~~~~~~~~----------------~~~~~~~~~-~~--------~~~-~~~----~~------~~~~~~~~~~~~~~~l~ 115 (288)
T PRK08290 72 PGRDRDPG----------------PDQHPTLWW-DG--------ATK-PGV----EQ------RYAREWEVYLGMCRRWR 115 (288)
T ss_pred cccccccc----------------ccccccccc-cc--------ccc-cch----hh------HHHHHHHHHHHHHHHHH
Confidence 10000000 000011000 00 000 000 00 00011122334566788
Q ss_pred cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHH
Q psy12573 184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYN 263 (315)
Q Consensus 184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~ 263 (315)
++|||+||+|+|+|+|+|++|+++||+++++++++|++||.++|+. ..+.+.+++++|..++++++++|+.++++||++
T Consensus 116 ~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~-~~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~ 194 (288)
T PRK08290 116 DLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIP-GVEYFAHPWELGPRKAKELLFTGDRLTADEAHR 194 (288)
T ss_pred hCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcC-cchHHHHHHHhhHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999994 444566888999999999999999999999999
Q ss_pred cCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCC-Chhhh
Q psy12573 264 AGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSL-NIEEA 314 (315)
Q Consensus 264 ~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~-~l~~~ 314 (315)
+|+|+++++. +++.+.+.+++++|++.|+.+++.+|+.+++..+. +++++
T Consensus 195 ~GLV~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~ 245 (288)
T PRK08290 195 LGMVNRVVPR-DELEAETLELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAA 245 (288)
T ss_pred CCCccEeeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHH
Confidence 9999999999 99999999999999999999999999999987664 46554
No 52
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=2.6e-39 Score=281.06 Aligned_cols=204 Identities=25% Similarity=0.263 Sum_probs=177.4
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+++|+++..++ .+|.++++.++.|+++|+|||+|.| +.||+|.|++++... ...
T Consensus 23 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~--~~~------ 86 (273)
T PRK07396 23 IAKITINRPEVRNAFRPKTV--------KEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYG--GYV------ 86 (273)
T ss_pred EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcc--ccc------
Confidence 78899999999999999998 9999999999999999999999999 589999999865210 000
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
.. +. . . .+ ....++..+.++|||+||+|+|+
T Consensus 87 ----------------------------~~------~~--~-~----------~~--~~~~~~~~l~~~~kPvIAav~G~ 117 (273)
T PRK07396 87 ----------------------------DD------DG--V-P----------RL--NVLDLQRLIRTCPKPVIAMVAGY 117 (273)
T ss_pred ----------------------------ch------hh--h-h----------hh--HHHHHHHHHHhCCCCEEEEECCE
Confidence 00 00 0 0 00 01234556789999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|.+ +..++++++|..++++++++|+.++++||+++|||+++++. +
T Consensus 118 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~ 196 (273)
T PRK07396 118 AIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPL-A 196 (273)
T ss_pred EehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-H
Confidence 999999999999999999999999999999999887 45789999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQM 307 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~ 307 (315)
++.+.+.+++++|+..+|.+++.+|+.++...
T Consensus 197 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 228 (273)
T PRK07396 197 DLEKETVRWCREMLQNSPMALRCLKAALNADC 228 (273)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999998754
No 53
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=3e-39 Score=277.13 Aligned_cols=203 Identities=19% Similarity=0.244 Sum_probs=174.4
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+ .|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|.|+.++.. ..
T Consensus 11 v~~itlnrp~-~Nal~~~~~--------~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-----~~------ 70 (251)
T TIGR03189 11 LLRLRLARPK-ANIVDAAMI--------AALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-----DQ------ 70 (251)
T ss_pred EEEEEeCCCC-cCCCCHHHH--------HHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-----hh------
Confidence 7889999996 699999998 999999999999999999999999999999999875310 00
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.. ........++..+..+|||+||+|+|+|
T Consensus 71 ---------------------------~~-----------------------~~~~~~~~~~~~l~~~~kPvIaav~G~a 100 (251)
T TIGR03189 71 ---------------------------CA-----------------------AMLASLHKLVIAMLDSPVPILVAVRGQC 100 (251)
T ss_pred ---------------------------HH-----------------------HHHHHHHHHHHHHHhCCCCEEEEecCee
Confidence 00 0011123456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
+|||++|+++||+++++++++|++||+++|++|.++++++++++|...+++++++|+.++++||+++|++++++++ ++
T Consensus 101 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-~~- 178 (251)
T TIGR03189 101 LGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAED-PE- 178 (251)
T ss_pred eeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCc-HH-
Confidence 9999999999999999999999999999999987667889999999999999999999999999999999999986 44
Q ss_pred HHHHHHH-HHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573 278 ESETKVL-TSAILENSRSVLTLGKQFLYQQMSLNIEE 313 (315)
Q Consensus 278 ~~~~~~~-~~~l~~~~~~a~~~~k~~l~~~~~~~l~~ 313 (315)
+.+.++ ++++++.||.+++.+|+.++.....++++
T Consensus 179 -~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~ 214 (251)
T TIGR03189 179 -NAALAWFDEHPAKLSASSLRFAVRAARLGMNERVKA 214 (251)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHH
Confidence 455555 68999999999999999999876665543
No 54
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=3.3e-39 Score=278.63 Aligned_cols=201 Identities=25% Similarity=0.303 Sum_probs=176.2
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC--CccccchhhhHHhhhccCchhHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS--AFGFSGMELETLAVDKEGRPKLDEI 115 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g--~~~~aG~Dl~~~~~~~~~~~~~~~~ 115 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+ +++|||+|.| ++||+|.|++++....
T Consensus 14 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~--------- 75 (261)
T PRK11423 14 IATITFNNPAKRNALSKVLI--------DDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG--------- 75 (261)
T ss_pred EEEEEEcCccccCCCCHHHH--------HHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc---------
Confidence 78899999999999999998 99999999999887 9999999863 7899999998753100
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
. +.. .+...+..++..+..+|||+||+|+|
T Consensus 76 ------------------------------~------~~~--------------~~~~~~~~l~~~i~~~~kPvIaav~G 105 (261)
T PRK11423 76 ------------------------------R------DPL--------------SYDDPLRQILRMIQKFPKPVIAMVEG 105 (261)
T ss_pred ------------------------------c------cHH--------------HHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 0 000 00111234566788999999999999
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN 274 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~ 274 (315)
+|+|||++|+++||+++++++++|++||.++|++|.++ ..++++++|..++++++++|++++++||+++|+|+++++.
T Consensus 106 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~- 184 (261)
T PRK11423 106 SVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEV- 184 (261)
T ss_pred EEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCH-
Confidence 99999999999999999999999999999999998874 5789999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q psy12573 275 EELESETKVLTSAILENSRSVLTLGKQFLYQQM 307 (315)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~ 307 (315)
+++.+.+.++++++++.+|.+++.+|+.++...
T Consensus 185 ~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~ 217 (261)
T PRK11423 185 EELEDFTLQMAHHISEKAPLAIAVIKEQLRVLG 217 (261)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998653
No 55
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-39 Score=283.48 Aligned_cols=219 Identities=21% Similarity=0.240 Sum_probs=180.8
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.++|++++.|+++++|||+|.|++||+|.|++++.......+.
T Consensus 14 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~------ 79 (296)
T PRK08260 14 IATITLNRPDKLNAFTVTMA--------RELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP------ 79 (296)
T ss_pred EEEEEeCCCcccCCCCHHHH--------HHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc------
Confidence 78899999999999999998 9999999999999999999999999999999999876310000000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
..+. . ...+. ...... .+......++..+..+|||+||+|+|+
T Consensus 80 ------------~~~~--------------~-~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~ 123 (296)
T PRK08260 80 ------------RTPV--------------E-ADEED---------RADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGP 123 (296)
T ss_pred ------------cccc--------------c-ccccc---------ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 0000 0 00000 000000 122223456677889999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|.+++ +++++++|..++++++++|++++++||+++|+|+++++. +
T Consensus 124 a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~-~ 202 (296)
T PRK08260 124 AVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPP-D 202 (296)
T ss_pred eehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCH-H
Confidence 99999999999999999999999999999999998854 689999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhh
Q psy12573 276 ELESETKVLTSAILEN-SRSVLTLGKQFLYQQM 307 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~-~~~a~~~~k~~l~~~~ 307 (315)
++.+.+.+++++|+.. +|.+++.+|+++++..
T Consensus 203 ~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~ 235 (296)
T PRK08260 203 ELLPAARALAREIADNTSPVSVALTRQMMWRMA 235 (296)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 9999999999999985 9999999999998764
No 56
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-39 Score=284.56 Aligned_cols=222 Identities=18% Similarity=0.206 Sum_probs=175.6
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||||+++|+++..++ .+|.+++++++.|+++|+|||+|.|+.||+|+||+...... ...
T Consensus 15 Va~ItLnrP~~~NAl~~~~~--------~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~---~~~----- 78 (298)
T PRK12478 15 VATITLNRPEQLNTIVPPMP--------DEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHW---GEA----- 78 (298)
T ss_pred EEEEEecCCcccCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCcccCcCcccccccc---chh-----
Confidence 88899999999999999999 99999999999999999999999999999999997521100 000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
..+ .+. .....++..+... .......+..+.++|||+||+|+|+|
T Consensus 79 ------------~~~-----------~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~kPvIAaV~G~a 123 (298)
T PRK12478 79 ------------MMT-----------DGR-WDPGKDFAMVTAR-----------ETGPTQKFMAIWRASKPVIAQVHGWC 123 (298)
T ss_pred ------------ccc-----------ccc-cCchhhhhhhhhh-----------hcchHHHHHHHHhCCCCEEEEEccEE
Confidence 000 000 0000000000000 00011234467889999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccC-CCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARH-GIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~-Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++ |+++.. . +.+++|..++++++++|++++++||+++|||+++++. ++
T Consensus 124 ~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~-~--~~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~ 199 (298)
T PRK12478 124 VGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTG-M--WLYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPF-ER 199 (298)
T ss_pred ehhHHHHHHHCCEEEEcCCcEEeccccccccCCchh-H--HHHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCH-HH
Confidence 99999999999999999999999999997 887522 2 2356999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC-CChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMS-LNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~-~~l~~~ 314 (315)
+.+.+.+++++|+..||.+++.+|++++.... .+++++
T Consensus 200 l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~ 238 (298)
T PRK12478 200 LEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLAST 238 (298)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHH
Confidence 99999999999999999999999999998765 345544
No 57
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=3.3e-39 Score=278.68 Aligned_cols=210 Identities=27% Similarity=0.378 Sum_probs=184.3
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++.+|||+|+++|+++..++ .+|.+++.+++.|+++|+|||+|.|+.||+|+||+.+.. +.
T Consensus 15 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~-----~~------ 75 (257)
T COG1024 15 IAVITLNRPEKLNALNLEML--------DELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS-----PE------ 75 (257)
T ss_pred EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc-----cc------
Confidence 78899999999999999999 999999999999999999999999999999999998752 00
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
..... . .+......++..+.++||||||+|+|+|
T Consensus 76 --------------------------~~~~~------~--------------~~~~~~~~~~~~l~~~~kPvIAav~G~a 109 (257)
T COG1024 76 --------------------------DGNAA------E--------------NLMQPGQDLLRALADLPKPVIAAVNGYA 109 (257)
T ss_pred --------------------------chhHH------H--------------HHHhHHHHHHHHHHhCCCCEEEEEcceE
Confidence 00000 0 1222334577889999999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++|+++++|++||+++|++|+. +++++++++|...+++++++|+.++++||+++|+|+++++..++
T Consensus 110 ~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~ 189 (257)
T COG1024 110 LGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEE 189 (257)
T ss_pred eechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHH
Confidence 99999999999999999999999999999999964 56889999999999999999999999999999999999985369
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE 313 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~ 313 (315)
+.+.+.+++++++. +|.++..+|+.++......+++
T Consensus 190 l~~~a~~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~ 225 (257)
T COG1024 190 LLERALELARRLAA-PPLALAATKRLVRAALEADLAE 225 (257)
T ss_pred HHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhhccHHH
Confidence 99999999999988 9999999999999886655554
No 58
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-39 Score=279.51 Aligned_cols=215 Identities=23% Similarity=0.274 Sum_probs=181.9
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|.|++++..... ...
T Consensus 13 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~--~~~----- 77 (262)
T PRK07509 13 IADVRLNRPDKMNALDFAMF--------EELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPG--NAV----- 77 (262)
T ss_pred EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccc--hhh-----
Confidence 78899999999999999998 999999999999999999999999999999999987642100 000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
. ++... .......+..++..+.++|||+||+|+|+|
T Consensus 78 ----------------------------~------~~~~~----------~~~~~~~~~~~~~~~~~~~kpvIaav~G~a 113 (262)
T PRK07509 78 ----------------------------K------LLFKR----------LPGNANLAQRVSLGWRRLPVPVIAALEGVC 113 (262)
T ss_pred ----------------------------h------hHhhh----------hHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 0 00000 001111223455677899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|+++ ++++++++|...+++++++|+.++++||+++|+|+++++.
T Consensus 114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--- 190 (262)
T PRK07509 114 FGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSDD--- 190 (262)
T ss_pred ecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhch---
Confidence 999999999999999999999999999999999875 4789999999999999999999999999999999999854
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+.+.+.++++++++.||.++..+|+.+++....+++++
T Consensus 191 ~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~ 228 (262)
T PRK07509 191 PLAAALALAREIAQRSPDAIAAAKRLINRSWTASVRAL 228 (262)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 67899999999999999999999999998877666543
No 59
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=3.8e-39 Score=280.13 Aligned_cols=211 Identities=20% Similarity=0.259 Sum_probs=180.6
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC--CccccchhhhHHhhhccCchhHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS--AFGFSGMELETLAVDKEGRPKLDEI 115 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g--~~~~aG~Dl~~~~~~~~~~~~~~~~ 115 (315)
++++|||+| +.|+++..++ .+|.+++++++.|+++|+|||+|.| ++||+|.|++++.....
T Consensus 22 Va~itlnr~-~~Nal~~~~~--------~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~-------- 84 (278)
T PLN03214 22 IAVVWLAKE-PVNSMTLAMW--------RSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKT-------- 84 (278)
T ss_pred EEEEEECCC-CCCCCCHHHH--------HHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcccc--------
Confidence 888999997 5799999998 9999999999999999999999998 68999999987531000
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
.... .. .+......++..+.++||||||+|+|
T Consensus 85 ----------------------------~~~~------~~--------------~~~~~~~~~~~~l~~~~kPvIAaV~G 116 (278)
T PLN03214 85 ----------------------------SAAR------YA--------------EFWLTQTTFLVRLLRSRLATVCAIRG 116 (278)
T ss_pred ----------------------------chHH------HH--------------HHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 0000 00 01111223556788999999999999
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCC-CCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGI-FCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl-~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
+|+|||++|+++||+++++++++|++||+++|+ +|..+ .+++++++|..++++++++|+.++++||+++|+|+++++.
T Consensus 117 ~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~ 196 (278)
T PLN03214 117 ACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPA 196 (278)
T ss_pred cccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecCh
Confidence 999999999999999999999999999999999 48765 4789999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 274 NEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 274 ~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
+++.+.+.+++++|+..+|.+++.+|+.+++....+++++
T Consensus 197 -~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~ 236 (278)
T PLN03214 197 -AALMEAAASAMERALKLPSAARAATKALLREEFSAAWEAY 236 (278)
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999998766665543
No 60
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=6.7e-39 Score=299.10 Aligned_cols=278 Identities=17% Similarity=0.151 Sum_probs=221.5
Q ss_pred CCceEEeC-CChhhHhhhhhhccCC----------CcccccCCCCccccchHHHHHHHHHHhhh-cCCCCeEEEEEcCC-
Q psy12573 24 DNCIIVGE-GANTMDIGRSLLLNNL----------PRHRLDAGTFGTMGVGLGFALAAALYCNH-YAPGKRVVCVQGDS- 90 (315)
Q Consensus 24 ~~~~~~~~-g~~~~~~~~~~l~~~~----------~~n~~~~~~~~~mg~~~~~~l~~~l~~~~-~d~~~~vvvl~g~g- 90 (315)
.+.+.+.. ++ ++++|||+|+ ++|+++..++ .+|.+++++++ +|+++++|||+|.+
T Consensus 14 ~~~~~~e~~~~----Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~--------~eL~~al~~~~~~d~~vrvVVLtg~gg 81 (550)
T PRK08184 14 YRHWKLSFDGP----VATLTMDVDEDGGLRPGYKLKLNSYDLGVD--------IELHDALQRIRFEHPEVRTVVVTSAKD 81 (550)
T ss_pred CceEEEEeeCC----EEEEEEcCccccccCcccccCCCCCCHHHH--------HHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 34444443 54 8889999653 7899998888 99999999998 78999999999985
Q ss_pred CccccchhhhHHhhhccC-chhHHHHHHH-HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh--cCCCCc
Q psy12573 91 AFGFSGMELETLAVDKEG-RPKLDEIFST-CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTP 166 (315)
Q Consensus 91 ~~~~aG~Dl~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~--~~~~~~ 166 (315)
+.||+|.|++.+...... ........+. ...+...+..+++|+|++|||.+.|+|..++..||++++++. ++|+.|
T Consensus 82 k~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~p 161 (550)
T PRK08184 82 RVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLP 161 (550)
T ss_pred CCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEcc
Confidence 789999999987431110 0001111111 122334567899999999999999999999999999887654 334333
Q ss_pred chh--hHHHH----------------------------------------------------------------------
Q psy12573 167 GYN--ILVST---------------------------------------------------------------------- 174 (315)
Q Consensus 167 ~~~--~~~~~---------------------------------------------------------------------- 174 (315)
+.+ ++.+.
T Consensus 162 Ev~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~~~~~~ 241 (550)
T PRK08184 162 EVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDRPADAK 241 (550)
T ss_pred chhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 210 00000
Q ss_pred --------------------------------------------------------------------------------
Q psy12573 175 -------------------------------------------------------------------------------- 174 (315)
Q Consensus 175 -------------------------------------------------------------------------------- 174 (315)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~v 321 (550)
T PRK08184 242 GVALTPLERTIDADGLRYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDI 321 (550)
T ss_pred ccccccccccccCCceeeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCe
Confidence
Q ss_pred ------------------------------------HHHHHHHHhcCCCcEEEEEc-cccchhh-hHHHhhcCeeeee--
Q psy12573 175 ------------------------------------CSDLMLSILRHPVPILAIIS-GVAAAAG-CQLVATCDLAIAT-- 214 (315)
Q Consensus 175 ------------------------------------~~~~~~~l~~~~kpvIa~v~-G~~~g~G-~~l~l~~d~~~a~-- 214 (315)
...++..+.++|||+||+|+ |+|+||| ++|+++||+++++
T Consensus 322 r~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~ 401 (550)
T PRK08184 322 GTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLAL 401 (550)
T ss_pred EEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCC
Confidence 00123345678999999997 9999999 9999999999999
Q ss_pred -----CCceeeCCCccCCCCCCc-hHHHHhhh-cCHHHHHHH--HhcCCCCCHHHHHHcCccccccCCchHHHHHHHHHH
Q psy12573 215 -----TASKFSTPGARHGIFCST-PAVALTRK-VPLGVVRSM--TITGIPISAQDAYNAGLITRVVSSNEELESETKVLT 285 (315)
Q Consensus 215 -----~~a~~~~pe~~~Gl~~~~-~~~~l~~~-~g~~~a~~~--~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~~ 285 (315)
++++|++||.++|++|++ +.++|+++ +|..+++++ +++|+.++++||+++|||+++++. +++.+.+.+++
T Consensus 402 ~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a 480 (550)
T PRK08184 402 PDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD-IDWEDEVRIAL 480 (550)
T ss_pred CCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh-HHHHHHHHHHH
Confidence 999999999999999987 45789988 699999997 589999999999999999999999 99999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 286 SAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 286 ~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++++..||.+++.+|++++.....+++++
T Consensus 481 ~~ia~~~p~a~~~~K~~l~~~~~~~~~~~ 509 (550)
T PRK08184 481 EERASLSPDALTGMEANLRFAGPETMETR 509 (550)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999988888775
No 61
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.6e-38 Score=280.57 Aligned_cols=205 Identities=27% Similarity=0.320 Sum_probs=178.5
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||+|+++|+++..++ .+|.+++..++.|+++++|||+|.| +.||+|+|++.+... ...
T Consensus 77 Va~ItLnrP~~~Nal~~~~~--------~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~--~~~------ 140 (327)
T PLN02921 77 IAKITINRPERRNAFRPRTV--------KELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKD--GYV------ 140 (327)
T ss_pred EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcc--ccc------
Confidence 88999999999999999999 9999999999999999999999999 689999999765310 000
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
+ .+ .. ..+ ....++..+.++||||||+|+|+
T Consensus 141 ----------------------------~------~~--~~-----------~~~--~~~~l~~~l~~~~kPvIAaVnG~ 171 (327)
T PLN02921 141 ----------------------------G------PD--DA-----------GRL--NVLDLQIQIRRLPKPVIAMVAGY 171 (327)
T ss_pred ----------------------------c------hh--HH-----------HHH--HHHHHHHHHHhCCCCEEEEECCE
Confidence 0 00 00 000 01234557789999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|.+ +.+.+++++|..++++++++|+.++++||+++|||+++++. +
T Consensus 172 a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~-~ 250 (327)
T PLN02921 172 AVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPL-D 250 (327)
T ss_pred EecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCH-H
Confidence 999999999999999999999999999999999877 45789999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMS 308 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~ 308 (315)
++.+.+.+++++|++.+|.+++.+|++++...+
T Consensus 251 ~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~ 283 (327)
T PLN02921 251 ELEGETVKWCREILRNSPTAIRVLKSALNAADD 283 (327)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999987643
No 62
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.7e-39 Score=281.38 Aligned_cols=226 Identities=22% Similarity=0.200 Sum_probs=179.1
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||||+++|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|.|++++.........
T Consensus 20 V~~Itlnrp~~~Nal~~~m~--------~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~------ 85 (302)
T PRK08272 20 IARITLNRPEKGNAITADTP--------LELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGG------ 85 (302)
T ss_pred EEEEEecCccccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccc------
Confidence 88999999999999999998 9999999999999999999999999999999999887431100000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
..+.+.. .. .... ..+.. ..+-.. .........+..+.++|||+||+|+|+
T Consensus 86 ----------~~~~~~~--~~-----~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 137 (302)
T PRK08272 86 ----------GGAYPGK--RQ-----AVNH---LPDDP--------WDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGY 137 (302)
T ss_pred ----------ccccccc--cc-----cccc---ccccc--------ccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 0000000 00 0000 00000 000000 122334456677889999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
|+|||++|+++||+++++++++|++||.++|.+|. ...+.+++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus 138 a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~--~~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~ 214 (302)
T PRK08272 138 CVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPA--TGMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPP-EE 214 (302)
T ss_pred eehhhHHHHHhCCEEEEeCCCEecCcchhcccCCh--HHHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCH-HH
Confidence 99999999999999999999999999999755553 2457788999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMS 308 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~ 308 (315)
+.+.+.+++++|++.||.+++.+|+.+++.++
T Consensus 215 l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~ 246 (302)
T PRK08272 215 LDERTERLVERIAAVPVNQLAMVKLAVNSALL 246 (302)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 63
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-38 Score=272.61 Aligned_cols=202 Identities=20% Similarity=0.167 Sum_probs=175.3
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++|+|||+|.|+.||+|.|++++... .
T Consensus 10 v~~itlnrp~~~Nal~~~~~--------~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~-----~------ 70 (248)
T PRK06072 10 YAIVTMSRPDKLNALNLEMR--------NEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD-----F------ 70 (248)
T ss_pred EEEEEECCcccccCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh-----h------
Confidence 78899999999999999998 9999999999999999999999999999999999865310 0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.. .+...+..++..+..+|||+||+|+|+|
T Consensus 71 ---------------------------~~-----------------------~~~~~~~~~~~~l~~~~kPvIaav~G~a 100 (248)
T PRK06072 71 ---------------------------AI-----------------------DLRETFYPIIREIRFSDKIYISAINGVT 100 (248)
T ss_pred ---------------------------HH-----------------------HHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 00 0011123455677889999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|+|++|+++||+++++++++|++||.++|++|..+ .+.+++++|. ++++++++|+.++++||+++|+|+.+ ++
T Consensus 101 ~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~----~~ 175 (248)
T PRK06072 101 AGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS----ED 175 (248)
T ss_pred ehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc----ch
Confidence 999999999999999999999999999999998875 4689999996 89999999999999999999999953 34
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE 313 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~ 313 (315)
+.+.+.++++++++.||.+++.+|+.+++....++++
T Consensus 176 ~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~ 212 (248)
T PRK06072 176 PLSDAEEMANRISNGPFQSYIAAKRMINLVLYNDLEE 212 (248)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHH
Confidence 6788999999999999999999999999876666654
No 64
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=1.2e-38 Score=284.19 Aligned_cols=213 Identities=23% Similarity=0.239 Sum_probs=181.2
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++++|||||+++|+++..|+ .+|.+++.+++.|+++|+|||+|.| ++||+|+|++++......
T Consensus 13 v~~itLnrP~~~Nal~~~m~--------~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~-------- 76 (342)
T PRK05617 13 VGVITLNRPKALNALSLEMI--------RAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARA-------- 76 (342)
T ss_pred EEEEEECCCccccCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhcc--------
Confidence 78899999999999999998 9999999999999999999999999 899999999876420000
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
.+. +.. ..+......++..+..+|||+||+|+|+
T Consensus 77 ---------------------------~~~------~~~-------------~~~~~~~~~~~~~i~~~~kPvIAaVnG~ 110 (342)
T PRK05617 77 ---------------------------GDP------LAA-------------DRFFREEYRLNALIARYPKPYIALMDGI 110 (342)
T ss_pred ---------------------------CCc------hhH-------------HHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 000 000 0011112235567789999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
|+|||++|+++||+++++++++|++||.++|++|++++ ++++++.| ..+++++++|+.++++||+++|+|+++++. +
T Consensus 111 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~-~ 188 (342)
T PRK05617 111 VMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPS-A 188 (342)
T ss_pred EEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCH-H
Confidence 99999999999999999999999999999999998855 67888766 789999999999999999999999999998 8
Q ss_pred HHHHH--------------------------------------------------------------HHHHHHHHHhCCH
Q psy12573 276 ELESE--------------------------------------------------------------TKVLTSAILENSR 293 (315)
Q Consensus 276 ~~~~~--------------------------------------------------------------~~~~~~~l~~~~~ 293 (315)
++.+. +.+++++|++.||
T Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp 268 (342)
T PRK05617 189 DLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTLRSRSP 268 (342)
T ss_pred HHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHHHhCCc
Confidence 88776 8899999999999
Q ss_pred HHHHHHHHHHHHhhCCChhhh
Q psy12573 294 SVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 294 ~a~~~~k~~l~~~~~~~l~~~ 314 (315)
.+++.+|+++++....+++++
T Consensus 269 ~a~~~~k~~l~~~~~~~l~~~ 289 (342)
T PRK05617 269 TSLKVTLEQLRRARGLTLEEC 289 (342)
T ss_pred HHHHHHHHHHHHhcCCCHHHH
Confidence 999999999998877777665
No 65
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=2.1e-39 Score=278.47 Aligned_cols=209 Identities=27% Similarity=0.396 Sum_probs=186.9
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
|++++||+|+++|++|..++ .+|.++|+.++.|+++++|+++|.|+.||+|.|++++... ..
T Consensus 8 v~~i~ln~p~~~N~l~~~~~--------~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~---~~------- 69 (245)
T PF00378_consen 8 VATITLNRPEKRNALNPEML--------DELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS---DE------- 69 (245)
T ss_dssp EEEEEEECGGGTTEBSHHHH--------HHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH---HH-------
T ss_pred EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc---cc-------
Confidence 78899999999999999998 9999999999999999999999999999999999887641 00
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
. ....+...+..++..+..+|||+||+|+|+|
T Consensus 70 -------------------------------------~-----------~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a 101 (245)
T PF00378_consen 70 -------------------------------------E-----------EAREFFRRFQELLSRLANFPKPTIAAVNGHA 101 (245)
T ss_dssp -------------------------------------H-----------HHHHHHHHHHHHHHHHHHSSSEEEEEESSEE
T ss_pred -------------------------------------c-----------cccccchhhccccccchhhhhheeecccccc
Confidence 0 0002334456788889999999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|+|++|+++||+++++++++|++||.++|++|+. +..++++++|...+++++++|+.++++||+++|++++++++ ++
T Consensus 102 ~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~ 180 (245)
T PF00378_consen 102 VGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPD-EE 180 (245)
T ss_dssp ETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESG-GG
T ss_pred cccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEEcCc-hh
Confidence 99999999999999999999999999999999977 45789999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE 313 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~ 313 (315)
+.+.+.+++++++..++.+++.+|+.+++.....+++
T Consensus 181 l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~ 217 (245)
T PF00378_consen 181 LDEEALELAKRLAAKPPSALRATKKALNRALEQSLEE 217 (245)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999976655544
No 66
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-38 Score=274.43 Aligned_cols=209 Identities=21% Similarity=0.264 Sum_probs=177.9
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.++++.++.|+++++|||+|.|+.||+|.|++++.....+..
T Consensus 16 v~~i~lnrp~~~Nal~~~~~--------~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~------- 80 (260)
T PRK07827 16 VATLTLDSPHNRNALSARLV--------AQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPY------- 80 (260)
T ss_pred EEEEEEcCccccCCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCch-------
Confidence 78899999999999999998 999999999999999999999999999999999987642000000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+. . ..+...+..+++.+..+|||+||+|+|+|
T Consensus 81 -----------------------------------~~---~----------~~~~~~~~~~~~~l~~~~kPvIaav~G~a 112 (260)
T PRK07827 81 -----------------------------------DA---A----------VARAREMTALLRAIVELPKPVIAAIDGHV 112 (260)
T ss_pred -----------------------------------hH---H----------HHHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence 00 0 01112234566778899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|++++ ++++++ +...+++++++|+.++++||+++|+|++++ ++
T Consensus 113 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l-~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~---~~ 188 (260)
T PRK07827 113 RAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRL-SPRAAARYYLTGEKFGAAEAARIGLVTAAA---DD 188 (260)
T ss_pred ecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhh-hHHHHHHHHHhCCccCHHHHHHcCCcccch---HH
Confidence 9999999999999999999999999999999998865 567765 567899999999999999999999999985 45
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE 313 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~ 313 (315)
+.+.+.++++++++.+|.++..+|+.+++....++++
T Consensus 189 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~ 225 (260)
T PRK07827 189 VDAAVAALLADLRRGSPQGLAESKALTTAAVLAGFDR 225 (260)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHH
Confidence 8999999999999999999999999999887666554
No 67
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-38 Score=268.21 Aligned_cols=206 Identities=19% Similarity=0.229 Sum_probs=177.3
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+| +.|++++.++ .+|.+++++++ +++++||++|.|+.||+|.|++++... +.
T Consensus 13 v~~itln~~-~~Nal~~~~~--------~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~----~~------ 71 (229)
T PRK06213 13 VATITLDDG-KVNALSPAMI--------DALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG----AQ------ 71 (229)
T ss_pred EEEEEeCCC-CCCCCCHHHH--------HHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc----hH------
Confidence 788999997 6799999998 99999999887 557999999999999999999876320 00
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+. ..+......++..+..+|||+||+|+|+|
T Consensus 72 -----------------------------------~~--------------~~~~~~~~~l~~~l~~~~kPvIAav~G~a 102 (229)
T PRK06213 72 -----------------------------------AA--------------IALLTAGSTLARRLLSHPKPVIVACTGHA 102 (229)
T ss_pred -----------------------------------hH--------------HHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 00 01112233456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCC-ceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573 198 AAAGCQLVATCDLAIATTA-SKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~-a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~ 275 (315)
+|+|++|+++||+++++++ ++|++||.++|++|.. +...+.+++|...+++++++|++++++||+++|+|+++++. +
T Consensus 103 ~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~ 181 (229)
T PRK06213 103 IAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPP-E 181 (229)
T ss_pred eHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccCh-H
Confidence 9999999999999999998 9999999999998655 45678889999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++.+.+.++++++++.+|.+++.+|+.++.....+++++
T Consensus 182 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~ 220 (229)
T PRK06213 182 QLLARAQAAARELAGLNMGAHAATKLKVRAAALEAIRAA 220 (229)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998766665543
No 68
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=3.5e-38 Score=284.35 Aligned_cols=212 Identities=17% Similarity=0.162 Sum_probs=179.1
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||||+++|+++..++ .+|.++++.++.|+++|+|||+|.|+.||+|+|++++......
T Consensus 21 v~~ItLnrP~~~Nal~~~m~--------~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~--------- 83 (379)
T PLN02874 21 VRVITLNRPRQLNVISLSVV--------SLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRES--------- 83 (379)
T ss_pred EEEEEECCCccccCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhccc---------
Confidence 78899999999999999998 9999999999999999999999999999999999876320000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+. .. .........+...+.++|||+||+|+|+|
T Consensus 84 ---------------------------~~------~~--------------~~~~~~~~~l~~~i~~~~kPvIAaV~G~a 116 (379)
T PLN02874 84 ---------------------------DD------SC--------------LEVVYRMYWLCYHIHTYKKTQVALVHGLV 116 (379)
T ss_pred ---------------------------ch------HH--------------HHHHHHHHHHHHHHHhCCCCEEEEecCeE
Confidence 00 00 00111122344567899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|++++ +++++++|. .+++++++|+++++++|+++||++++++. ++
T Consensus 117 ~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~ 194 (379)
T PLN02874 117 MGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPS-EK 194 (379)
T ss_pred EecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCH-HH
Confidence 9999999999999999999999999999999998754 678888775 89999999999999999999999999998 77
Q ss_pred HHH---H----------------------------------------------------------------HHHHHHHHH
Q psy12573 277 LES---E----------------------------------------------------------------TKVLTSAIL 289 (315)
Q Consensus 277 ~~~---~----------------------------------------------------------------~~~~~~~l~ 289 (315)
+.+ . +.+++++|+
T Consensus 195 l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~ 274 (379)
T PLN02874 195 LPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEIIKAFESEASKTGNEWIKETLKGLR 274 (379)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHhhcccccccHHHHHHHHHHH
Confidence 755 2 347899999
Q ss_pred hCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573 290 ENSRSVLTLGKQFLYQQMSLNIEEAY 315 (315)
Q Consensus 290 ~~~~~a~~~~k~~l~~~~~~~l~~~l 315 (315)
+.+|.+++.+|+++++..+.+++++|
T Consensus 275 ~~sP~al~~tk~~~~~~~~~~l~~~l 300 (379)
T PLN02874 275 RSSPTGLKITLRSIREGRKQSLAECL 300 (379)
T ss_pred hcChHHHHHHHHHHHHhccCCHHHHH
Confidence 99999999999999998887887654
No 69
>KOG1681|consensus
Probab=100.00 E-value=3.9e-40 Score=262.84 Aligned_cols=225 Identities=21% Similarity=0.296 Sum_probs=196.3
Q ss_pred HhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHH
Q psy12573 37 DIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 37 ~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++.++.||||.+.|+++..+| .|+.++++.++.||++|+|||+|.|+.||+|.|+..+.......+
T Consensus 31 ~V~hv~lnRPsk~Nal~~~~w--------~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~------ 96 (292)
T KOG1681|consen 31 FVYHVQLNRPSKLNALNKVFW--------REFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQP------ 96 (292)
T ss_pred eEEEEEecCcchhhhhhHHHH--------HHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcccc------
Confidence 466778999999999999999 999999999999999999999999999999999765532110000
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
-+-|..--. ...+.++..++..+..+.+||||||+++||+
T Consensus 97 ---------------------------------~~dd~aR~g-------~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~ 136 (292)
T KOG1681|consen 97 ---------------------------------EGDDVARKG-------RSLRRIIKRYQDTFTAIERCPKPVIAAVHGA 136 (292)
T ss_pred ---------------------------------ccchHhhhh-------HHHHHHHHHHHHHHHHHHhCChhHHHHHHhh
Confidence 011221100 1122566777889999999999999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcC-HHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVP-LGVVRSMTITGIPISAQDAYNAGLITRVVSSN 274 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g-~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~ 274 (315)
|+|+|+.|..+||+|++++++.|+..|+.+|+..+.++ .++++.+| ...++++.+|++.+++.||++.||++++++++
T Consensus 137 CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk 216 (292)
T KOG1681|consen 137 CIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDK 216 (292)
T ss_pred hccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCH
Confidence 99999999999999999999999999999999999877 68999999 78999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573 275 EELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315 (315)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l 315 (315)
+++.+.+..+++.|+.++|.+++.||..|+..++.+.+++|
T Consensus 217 ~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sL 257 (292)
T KOG1681|consen 217 EELLNGALPMAELIASKSPVAVQGTKENLLYSREHSVEESL 257 (292)
T ss_pred HHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhhhhhH
Confidence 99999999999999999999999999999999999988865
No 70
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=5.4e-38 Score=276.03 Aligned_cols=215 Identities=24% Similarity=0.223 Sum_probs=177.4
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-------CccccchhhhHHhhhccCch
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-------AFGFSGMELETLAVDKEGRP 110 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-------~~~~aG~Dl~~~~~~~~~~~ 110 (315)
++.+|||||+++|+++..++ .+|.+++++++.|+++++|||+|.| +.||+|+|++.+.... .
T Consensus 35 va~itlnrP~~~Nal~~~~~--------~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~---~ 103 (302)
T PRK08321 35 TVRIAFDRPEVRNAFRPHTV--------DELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDG---Y 103 (302)
T ss_pred EEEEEeCCcccccCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcccc---c
Confidence 78899999999999999998 9999999999999999999999998 4899999998652100 0
Q ss_pred hHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEE
Q psy12573 111 KLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPIL 190 (315)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 190 (315)
.. ..+.. ....+.. .. .. .....+.+.+..+|||+|
T Consensus 104 ~~------------------------------~~~~~-~~~~~~~-----------~~-~~-~~~~~~~~~l~~~pkP~I 139 (302)
T PRK08321 104 QY------------------------------AEGDE-ADTVDPA-----------RA-GR-LHILEVQRLIRFMPKVVI 139 (302)
T ss_pred cc------------------------------ccccc-ccchhhh-----------HH-HH-HHHHHHHHHHHcCCCCEE
Confidence 00 00000 0000000 00 00 011234556788999999
Q ss_pred EEEccccchhhhHHHhhcCeeeee-CCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccc
Q psy12573 191 AIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLIT 268 (315)
Q Consensus 191 a~v~G~~~g~G~~l~l~~d~~~a~-~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~ 268 (315)
|+|+|+|+|||++|+++||+++++ ++++|++||.++|++|.+ +++++++++|..++++++++|+.++++||+++|+|+
T Consensus 140 AaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~ 219 (302)
T PRK08321 140 AVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVN 219 (302)
T ss_pred EEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCce
Confidence 999999999999999999999999 689999999999999876 557899999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573 269 RVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS 308 (315)
Q Consensus 269 ~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~ 308 (315)
++++. +++.+.+.+++++|++.+|.+++.+|++++....
T Consensus 220 ~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~ 258 (302)
T PRK08321 220 AVVPH-AELETEALEWAREINGKSPTAMRMLKYAFNLTDD 258 (302)
T ss_pred EeeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Confidence 99998 9999999999999999999999999999987544
No 71
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-38 Score=269.52 Aligned_cols=192 Identities=22% Similarity=0.269 Sum_probs=168.2
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|++|..++ .+|.+++++++.| ++++|||+|.|+.||+|.|++....
T Consensus 10 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------------- 67 (243)
T PRK07854 10 VLTIELQRPERRNALNAELC--------EELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------------- 67 (243)
T ss_pred EEEEEeCCCccccCCCHHHH--------HHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh-------------
Confidence 78889999999999999998 9999999998865 8999999999999999999863100
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.. .+...+..++..+.++|||+||+|+|+|
T Consensus 68 ---------------------------~~-----------------------~~~~~~~~~~~~l~~~~kP~Iaav~G~a 97 (243)
T PRK07854 68 ---------------------------AD-----------------------DFPDALIEMLHAIDAAPVPVIAAINGPA 97 (243)
T ss_pred ---------------------------HH-----------------------HHHHHHHHHHHHHHhCCCCEEEEecCcc
Confidence 00 0011123456678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|++++++||+++|+|+++++.
T Consensus 98 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~--- 174 (243)
T PRK07854 98 IGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGTL--- 174 (243)
T ss_pred cccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccCH---
Confidence 999999999999999999999999999999999875 4689999999999999999999999999999999999653
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573 277 LESETKVLTSAILENSRSVLTLGKQFLYQQ 306 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~ 306 (315)
. .+.+++++|++.||.++..+|+.+++.
T Consensus 175 -~-~a~~~a~~l~~~~~~a~~~~K~~l~~~ 202 (243)
T PRK07854 175 -A-DAQAWAAEIAGLAPLALQHAKRVLNDD 202 (243)
T ss_pred -H-HHHHHHHHHHhCCHHHHHHHHHHHHcc
Confidence 2 789999999999999999999999864
No 72
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=7e-38 Score=269.60 Aligned_cols=200 Identities=17% Similarity=0.180 Sum_probs=171.2
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++ +++++||++|.|+.||+|+|++++..... .
T Consensus 14 i~~itlnrp~~~Nal~~~~~--------~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~--~------- 74 (255)
T PRK07112 14 VCFLQLHRPEAQNTINDRLI--------AECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPD--A------- 74 (255)
T ss_pred EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccc--c-------
Confidence 78899999999999999998 99999999987 46999999999999999999987632000 0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+. . . . ........++..+.++|||||++|+|+|
T Consensus 75 ---------------------------~~------~-~---~----------~~~~~~~~~~~~l~~~~kPvIaav~G~a 107 (255)
T PRK07112 75 ---------------------------GR------A-D---L----------IDAEPLYDLWHRLATGPYVTIAHVRGKV 107 (255)
T ss_pred ---------------------------ch------h-h---h----------hhHHHHHHHHHHHHcCCCCEEEEEecEE
Confidence 00 0 0 0 0001123466678899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
+|||++|+++||+++++++++|++||.++|++|.+++..+++++|..++++++++|+.++++||+++|+|++++++ ++.
T Consensus 108 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~ 186 (255)
T PRK07112 108 NAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGAN-SDT 186 (255)
T ss_pred EcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCc-HHH
Confidence 9999999999999999999999999999999998766789999999999999999999999999999999999987 553
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573 278 ESETKVLTSAILENSRSVLTLGKQFLYQQ 306 (315)
Q Consensus 278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~ 306 (315)
.+.++++++++.+|.+++.+|+.++..
T Consensus 187 --~~~~~a~~l~~~~p~a~~~~K~~~~~~ 213 (255)
T PRK07112 187 --LLRKHLLRLRCLNKAAVARYKSYASTL 213 (255)
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 578899999999999999999999865
No 73
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=8.9e-38 Score=281.11 Aligned_cols=214 Identities=18% Similarity=0.197 Sum_probs=179.9
Q ss_pred CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573 24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102 (315)
Q Consensus 24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~ 102 (315)
++.+++.. |+ ++++|||||+++|++|..|+ .+|.++|..++.|+++++|||+|.|+.||+|+|++++
T Consensus 36 ~~~V~~e~~g~----v~~ItLNRP~~lNALs~~m~--------~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l 103 (401)
T PLN02157 36 DYQVLVEGSGC----SRTAILNRPPALNALTTHMG--------YRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSL 103 (401)
T ss_pred CCceEEEEECC----EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHH
Confidence 34555554 54 88999999999999999999 9999999999999999999999999999999999876
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573 103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI 182 (315)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 182 (315)
..... .+. .... ..++.....+...+
T Consensus 104 ~~~~~------------------------------------~~~-------~~~~-----------~~~~~~~~~l~~~i 129 (401)
T PLN02157 104 YHLRK------------------------------------RGS-------PDAI-----------REFFSSLYSFIYLL 129 (401)
T ss_pred Hhhcc------------------------------------ccc-------hHHH-----------HHHHHHHHHHHHHH
Confidence 42100 000 0000 01122222345568
Q ss_pred hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573 183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDA 261 (315)
Q Consensus 183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a 261 (315)
.++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|++++ +++++++|. .+++++++|+.++++||
T Consensus 130 ~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA 208 (401)
T PLN02157 130 GTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEM 208 (401)
T ss_pred HhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHH
Confidence 8999999999999999999999999999999999999999999999999854 789999885 79999999999999999
Q ss_pred HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573 262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ 306 (315)
Q Consensus 262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~ 306 (315)
+++|++++++++ +++ +.+.+++++++..+|.++..+|+.++..
T Consensus 209 ~~~GLv~~vVp~-~~l-~~~~~~~~~i~~~~p~av~~~k~~~~~~ 251 (401)
T PLN02157 209 LACGLATHYIRS-EEI-PVMEEQLKKLLTDDPSVVESCLEKCAEV 251 (401)
T ss_pred HHcCCceEEeCH-hHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 999999999999 888 5777999999999999999999998765
No 74
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2e-37 Score=268.73 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=172.5
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhc-----CCCCeEEEEEcC-CCccccchhhhHHhhhccCchh
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHY-----APGKRVVCVQGD-SAFGFSGMELETLAVDKEGRPK 111 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~-----d~~~~vvvl~g~-g~~~~aG~Dl~~~~~~~~~~~~ 111 (315)
++++|+| |+++|+++..++ .+|.+++++++. |+++++|||+|. |+.||+|+|++++..... ..
T Consensus 27 ia~itl~-p~~~Nal~~~~~--------~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~-~~- 95 (287)
T PRK08788 27 VMWMYMR-AQPRPCFNLELL--------DDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIR-AG- 95 (287)
T ss_pred EEEEEEC-CCCCCCCCHHHH--------HHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhcc-cc-
Confidence 8888895 999999999998 999999999998 899999999999 788999999987531000 00
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEE
Q psy12573 112 LDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILA 191 (315)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa 191 (315)
+....... .......+..+.+ ...+|||+||
T Consensus 96 -----------------------------------------~~~~~~~~-------~~~~~~~~~~l~~-~~~~pkPvIA 126 (287)
T PRK08788 96 -----------------------------------------DRDALLAY-------ARACVDGVHAFHR-GFGAGAISIA 126 (287)
T ss_pred -----------------------------------------chHHHHHH-------HHHHHHHHHHHHH-hcCCCCCEEE
Confidence 00000000 0011111111111 1269999999
Q ss_pred EEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccc
Q psy12573 192 IISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRV 270 (315)
Q Consensus 192 ~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v 270 (315)
+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++||+++|+|+++
T Consensus 127 aV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~v 206 (287)
T PRK08788 127 LVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVL 206 (287)
T ss_pred EECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEe
Confidence 999999999999999999999999999999999999999875 4789999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 271 VSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
++. +++.+.+.+++++|+.. |.+...+|+..+.....++++.
T Consensus 207 v~~-~el~~~a~~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~ 248 (287)
T PRK08788 207 VED-GQGEAAVRTFIRKSKRK-LNGWRAMLRARRRVNPLSLEEL 248 (287)
T ss_pred cCc-hHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhccCCHHHH
Confidence 999 99999999999999987 7777777777666655555543
No 75
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=7.6e-37 Score=267.01 Aligned_cols=207 Identities=17% Similarity=0.162 Sum_probs=177.8
Q ss_pred hHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHH
Q psy12573 36 MDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDE 114 (315)
Q Consensus 36 ~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~ 114 (315)
.+++++|||+|+++|+++..|+ .+|.+++++++.|+++++|||+|.| +.||+|+|++++.....
T Consensus 36 ~~~A~ItLNRP~k~NAls~~ml--------~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~------- 100 (360)
T TIGR03200 36 LYNAWIILDNPKQYNSYTTDMV--------KAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA------- 100 (360)
T ss_pred eEEEEEEECCCCccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-------
Confidence 3467789999999999999998 9999999999999999999999999 58999999986532000
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573 115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIIS 194 (315)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~ 194 (315)
+.. .+...+...+..++..+..+||||||+|+
T Consensus 101 ------------------------------~~~------------------~~~~~~~~~~~~l~~~i~~~pKPVIAAVn 132 (360)
T TIGR03200 101 ------------------------------GNP------------------QEYRQYMRLFNDMVSAILGCDKPVICRVN 132 (360)
T ss_pred ------------------------------cCh------------------hHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 000 00011222234566778899999999999
Q ss_pred cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 195 G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
|+|+|||++|+++||+++++++++|++||.++|++|.+++ +++++++|..++++++++|+++++++|+++|+|+++++.
T Consensus 133 G~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~ 212 (360)
T TIGR03200 133 GMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA 212 (360)
T ss_pred CEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCc
Confidence 9999999999999999999999999999999999998854 789999999999999999999999999999999999998
Q ss_pred chHH------------HHHHHHHHHHHHhCCHH--HHHHHHHHHHHh
Q psy12573 274 NEEL------------ESETKVLTSAILENSRS--VLTLGKQFLYQQ 306 (315)
Q Consensus 274 ~~~~------------~~~~~~~~~~l~~~~~~--a~~~~k~~l~~~ 306 (315)
+++ ++.+.++.+.+...++. ++++.|.++++.
T Consensus 213 -~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 258 (360)
T TIGR03200 213 -LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQG 258 (360)
T ss_pred -hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcc
Confidence 888 78899999999988887 899999998873
No 76
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=8.3e-36 Score=253.80 Aligned_cols=205 Identities=18% Similarity=0.231 Sum_probs=170.2
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCC-eEEEEEcCCCccccchhhhHHhhhccCchhHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK-RVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF 116 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~-~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~ 116 (315)
++.++||+|+. |+++..++ .+|.+++++++.|+++ ++||++|.|+.||+|+|++++... ...+.
T Consensus 10 v~~i~Lnrp~~-Nal~~~~~--------~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~-~~~~~----- 74 (239)
T PLN02267 10 LFILTLTGDGE-HRLNPTLI--------DSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA-GSAPS----- 74 (239)
T ss_pred EEEEEeCCCCc-CcCCHHHH--------HHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc-ccCHH-----
Confidence 77889999974 99998888 9999999999998886 478889999999999999865310 00000
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
+. ..+...+..++..+.++|||+||+|+|+
T Consensus 75 ------------------------------------~~--------------~~~~~~~~~~~~~l~~~~kPvIAaV~G~ 104 (239)
T PLN02267 75 ------------------------------------RL--------------HLMVAKLRPLVADLISLPMPTIAAVTGH 104 (239)
T ss_pred ------------------------------------HH--------------HHHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 00 0111223445667889999999999999
Q ss_pred cchhhhHHHhhcCeeeee-CCceeeCCCccCCCC-CCchHHHHhhhcCHHHH-HHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 197 AAAAGCQLVATCDLAIAT-TASKFSTPGARHGIF-CSTPAVALTRKVPLGVV-RSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~-~~a~~~~pe~~~Gl~-~~~~~~~l~~~~g~~~a-~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
|+|||++|+++||+++++ ++++|++||.++|++ |.++..++++++|..++ ++++++|++++++||+++|+++++++.
T Consensus 105 a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 105 ASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred chHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCC
Confidence 999999999999999998 568999999999997 77677789999999998 699999999999999999999999985
Q ss_pred chHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhh
Q psy12573 274 NEELESETKVLTSAILEN--SRSVLTLGKQFLYQQM 307 (315)
Q Consensus 274 ~~~~~~~~~~~~~~l~~~--~~~a~~~~k~~l~~~~ 307 (315)
.+++.+.+.++++++++. ++.++..+|+.+++..
T Consensus 185 ~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~ 220 (239)
T PLN02267 185 AEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEV 220 (239)
T ss_pred HHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHH
Confidence 268999999999999987 5688999999887643
No 77
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=1.1e-35 Score=266.78 Aligned_cols=213 Identities=18% Similarity=0.199 Sum_probs=175.7
Q ss_pred CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573 24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102 (315)
Q Consensus 24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~ 102 (315)
++.+++.. ++ ++++|||||+.+|+++..|+ .+|.++|.+++.|+++++|||+|.|+.||+|+|++++
T Consensus 8 ~~~v~~~~~~~----i~~ItLnRP~~lNALs~~m~--------~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l 75 (381)
T PLN02988 8 QSQVLVEEKSS----VRILTLNRPKQLNALSFHMI--------SRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAV 75 (381)
T ss_pred CCceEEEEECC----EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHH
Confidence 34455543 54 88899999999999999998 9999999999999999999999999999999999876
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573 103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI 182 (315)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 182 (315)
..... .+ +.... ..++.....+...+
T Consensus 76 ~~~~~------------------------------------~~-------~~~~~-----------~~~f~~~~~l~~~i 101 (381)
T PLN02988 76 VRDIE------------------------------------QG-------NWRLG-----------ANFFSDEYMLNYVM 101 (381)
T ss_pred Hhhhc------------------------------------cc-------chhHH-----------HHHHHHHHHHHHHH
Confidence 42000 00 00000 01111111233467
Q ss_pred hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573 183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA 261 (315)
Q Consensus 183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a 261 (315)
..+|||+||+++|+|+|||++|+++||++++++.++|++||.++|++|+++ +++++++.|. .+++++++|+++++++|
T Consensus 102 ~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA 180 (381)
T PLN02988 102 ATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEM 180 (381)
T ss_pred HHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHH
Confidence 889999999999999999999999999999999999999999999999885 4788888886 68899999999999999
Q ss_pred HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy12573 262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQ 305 (315)
Q Consensus 262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~ 305 (315)
+++|++++++++ +++.+.+.+++ +++..+|.++..+|+.+..
T Consensus 181 ~~~GLv~~vv~~-~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~ 222 (381)
T PLN02988 181 LACGLATHFVPS-TRLTALEADLC-RIGSNDPTFASTILDAYTQ 222 (381)
T ss_pred HHcCCceEecCH-hHHHHHHHHHH-HhhccCHHHHHHHHHHhhc
Confidence 999999999999 99999999988 7778889999999988764
No 78
>KOG1679|consensus
Probab=100.00 E-value=1.5e-36 Score=240.26 Aligned_cols=225 Identities=21% Similarity=0.276 Sum_probs=191.8
Q ss_pred CCceEEeC--CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC-CCccccchhhh
Q psy12573 24 DNCIIVGE--GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD-SAFGFSGMELE 100 (315)
Q Consensus 24 ~~~~~~~~--g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~-g~~~~aG~Dl~ 100 (315)
.+.+.+.. |.++ .|..+-+|||..+|++...++ ..+.+.|+++..|+.+|||+|.+. .+.||+|+|++
T Consensus 26 ~~Ev~v~~L~g~~~-GItvl~mNRpa~kNsl~r~~~--------~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLK 96 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDE-GITILNMNRPAKKNSLGRVFV--------KQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLK 96 (291)
T ss_pred CceeeeeeccCCCC-CeEEEecCChhhhccHHHHHH--------HHHHHHHHHHhhCCceeEEEEecCCCceeecCcchH
Confidence 44555553 4333 466667999999999999888 999999999999999999999765 56788899988
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573 101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML 180 (315)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (315)
+-.. . +..+...+...+..++.
T Consensus 97 ER~~--M--------------------------------------------------------s~~Ev~~fV~~lR~~~~ 118 (291)
T KOG1679|consen 97 ERKT--M--------------------------------------------------------SPSEVTRFVNGLRGLFN 118 (291)
T ss_pred hhhc--C--------------------------------------------------------CHHHHHHHHHHHHHHHH
Confidence 7542 1 11122245556677788
Q ss_pred HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQ 259 (315)
Q Consensus 181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~ 259 (315)
.+.++|.|+||++.|.++|||++|+++||+++++++++||++|.+++++|+. ++++|+|.+|...+||+++|++.+++.
T Consensus 119 dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~ 198 (291)
T KOG1679|consen 119 DIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGA 198 (291)
T ss_pred HHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccch
Confidence 8899999999999999999999999999999999999999999999999988 458999999999999999999999999
Q ss_pred HHHHcCccccccCCc---hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573 260 DAYNAGLITRVVSSN---EELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315 (315)
Q Consensus 260 ~a~~~Glv~~v~~~~---~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l 315 (315)
||...|+||.++..+ |...+.+.++++++..+.|.+++..|.+++++.+.++..+|
T Consensus 199 eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl 257 (291)
T KOG1679|consen 199 EAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASGL 257 (291)
T ss_pred hHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceecccccc
Confidence 999999999999763 36778899999999999999999999999999988876543
No 79
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=8.1e-35 Score=282.32 Aligned_cols=190 Identities=19% Similarity=0.249 Sum_probs=165.4
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++++|||+|+++|+++..++ .+|.+++++++.|+++|+|||+|.|+.||+|+|++++......
T Consensus 17 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~--------- 79 (715)
T PRK11730 17 IAELVFDAPGSVNKLDRATL--------ASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAA--------- 79 (715)
T ss_pred EEEEEEcCCCCCCCCCHHHH--------HHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccC---------
Confidence 88899999999999999998 9999999999999999999999999999999999876320000
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+-.. ...+......++..+..+|||+||+|+|+|
T Consensus 80 -----------------------------------~~~~-----------~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 113 (715)
T PRK11730 80 -----------------------------------PEEE-----------LSQWLHFANSIFNRLEDLPVPTVAAINGYA 113 (715)
T ss_pred -----------------------------------CHHH-----------HHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence 0000 001122234456778899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+++++++++|++||.++|++|+++ .+++++++|...+++++++|++++++||+++||++++++. ++
T Consensus 114 ~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~ 192 (715)
T PRK11730 114 LGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAP-EK 192 (715)
T ss_pred ehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCH-HH
Confidence 999999999999999999999999999999999875 4789999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhC
Q psy12573 277 LESETKVLTSAILEN 291 (315)
Q Consensus 277 ~~~~~~~~~~~l~~~ 291 (315)
+.+.+.+++++++..
T Consensus 193 l~~~a~~~a~~la~~ 207 (715)
T PRK11730 193 LQEAALALLKQAIAG 207 (715)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999999965
No 80
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=9.2e-34 Score=254.93 Aligned_cols=206 Identities=15% Similarity=0.162 Sum_probs=166.5
Q ss_pred CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573 24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102 (315)
Q Consensus 24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~ 102 (315)
++.+++.. ++ ++++|||||+++|+++..|+ .+|..+|..++.|+++++|||+|.|+.||+|+|++.+
T Consensus 41 ~~~v~~e~~~~----~~~ItLNRP~~lNALs~~m~--------~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l 108 (407)
T PLN02851 41 QDQVLVEGRAK----SRAAILNRPSSLNALTIPMV--------ARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSL 108 (407)
T ss_pred CCCeEEEEECC----EEEEEECCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHH
Confidence 44555544 54 67889999999999999999 9999999999999999999999999999999999877
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573 103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI 182 (315)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 182 (315)
..... .+ +.. ....++.....+...+
T Consensus 109 ~~~~~------------------------------------~~-------~~~-----------~~~~~f~~~~~l~~~i 134 (407)
T PLN02851 109 YHLIN------------------------------------EG-------NVE-----------ECKLFFENLYKFVYLQ 134 (407)
T ss_pred Hhhcc------------------------------------cc-------chH-----------HHHHHHHHHHHHHHHH
Confidence 43100 00 000 0002233344556677
Q ss_pred hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573 183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDA 261 (315)
Q Consensus 183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a 261 (315)
.++|||+||+++|.|+|||++|+++||++++++.++|++||.++|++|++++ ++++++.|.. ++++++||+++++++|
T Consensus 135 ~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA 213 (407)
T PLN02851 135 GTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEM 213 (407)
T ss_pred HhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHH
Confidence 8999999999999999999999999999999999999999999999999854 7788888874 8999999999999999
Q ss_pred HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHH
Q psy12573 262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTL 298 (315)
Q Consensus 262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 298 (315)
+++|++++++++ +++ +.+.+.+.++...++.++..
T Consensus 214 ~~~GLa~~~v~~-~~l-~~l~~~l~~~~~~~~~~~~~ 248 (407)
T PLN02851 214 IACGLATHYCLN-ARL-PLIEERLGKLLTDDPAVIED 248 (407)
T ss_pred HHCCCceeecCH-hhH-HHHHHHHHhhccCCHHHHHH
Confidence 999999999999 877 55666666665555554433
No 81
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=7.1e-34 Score=275.78 Aligned_cols=211 Identities=18% Similarity=0.213 Sum_probs=179.1
Q ss_pred hhhhhhccC-CCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHH
Q psy12573 38 IGRSLLLNN-LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEI 115 (315)
Q Consensus 38 ~~~~~l~~~-~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~ 115 (315)
++++|||+| +++|+++..++ .+|.+++++++.|+++|+|||+|.+ +.||+|+|++++.... ...
T Consensus 16 va~itlnrp~~~~Nal~~~~~--------~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~--~~~---- 81 (708)
T PRK11154 16 IAVITIDVPGEKMNTLKAEFA--------EQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACK--TAQ---- 81 (708)
T ss_pred EEEEEECCCCCCCcCCCHHHH--------HHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccC--CHH----
Confidence 788999999 69999999998 9999999999999999999999875 7899999998763200 000
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
+.. .+......++..+.++|||+||+|+|
T Consensus 82 -------------------------------------~~~--------------~~~~~~~~~~~~i~~~~kPvIAaV~G 110 (708)
T PRK11154 82 -------------------------------------EAE--------------ALARQGQQLFAEIEALPIPVVAAIHG 110 (708)
T ss_pred -------------------------------------HHH--------------HHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 000 11112334667788999999999999
Q ss_pred ccchhhhHHHhhcCeeeeeCC--ceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccC
Q psy12573 196 VAAAAGCQLVATCDLAIATTA--SKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVS 272 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~--a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~ 272 (315)
+|+|||++|+++||+++++++ ++|++||+++|++|+++ .+++++++|..++++++++|+.++++||+++|+++++++
T Consensus 111 ~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~ 190 (708)
T PRK11154 111 ACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVP 190 (708)
T ss_pred eeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecC
Confidence 999999999999999999986 49999999999999875 578999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHH-------------HHhCCHH----------------------HHHHHHHHHHHhhCCChhhh
Q psy12573 273 SNEELESETKVLTSA-------------ILENSRS----------------------VLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 273 ~~~~~~~~~~~~~~~-------------l~~~~~~----------------------a~~~~k~~l~~~~~~~l~~~ 314 (315)
. +++.+.+.+++++ ++..+|. ++..+|++++.....+++++
T Consensus 191 ~-~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~ 266 (708)
T PRK11154 191 H-SILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSG 266 (708)
T ss_pred h-HHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHH
Confidence 9 9999999999988 4555553 78999999999888777665
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.6e-33 Score=272.61 Aligned_cols=212 Identities=17% Similarity=0.212 Sum_probs=176.8
Q ss_pred hhhhhhccC-CCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE-EcCCCccccchhhhHHhhhccCchhHHHH
Q psy12573 38 IGRSLLLNN-LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV-QGDSAFGFSGMELETLAVDKEGRPKLDEI 115 (315)
Q Consensus 38 ~~~~~l~~~-~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl-~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~ 115 (315)
++++|||+| +++|+++..++ .+|.+++++++.|+++|+||| +|.|+.||+|+|++++... .+..
T Consensus 11 Va~itlnrp~~~~Nal~~~~~--------~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~-~~~~----- 76 (699)
T TIGR02440 11 IAILTIDVPGEKMNTLKAEFA--------DQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAAC-QTAG----- 76 (699)
T ss_pred EEEEEECCCCCCCCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhcc-CChh-----
Confidence 788899999 68999999998 999999999999999999886 6889999999999876320 0000
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
+.. .+......++..+.++|||+||+|||
T Consensus 77 -------------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIAaVnG 105 (699)
T TIGR02440 77 -------------------------------------EAK--------------ALAQQGQVLFAELEALPIPVVAAIHG 105 (699)
T ss_pred -------------------------------------HHH--------------HHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 000 11112234566788999999999999
Q ss_pred ccchhhhHHHhhcCeeeeeCC--ceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccC
Q psy12573 196 VAAAAGCQLVATCDLAIATTA--SKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVS 272 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~--a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~ 272 (315)
+|+|||++|+++||+++++++ ++|++||+++|++|+++ .+++++++|...+++++++|+.+++++|+++|+++++++
T Consensus 106 ~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~ 185 (699)
T TIGR02440 106 ACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVP 185 (699)
T ss_pred EeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecC
Confidence 999999999999999999975 79999999999999885 478999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHH-------------HHHhCCHHH----------------------HHHHHHHHHHhhCCChhhhC
Q psy12573 273 SNEELESETKVLTS-------------AILENSRSV----------------------LTLGKQFLYQQMSLNIEEAY 315 (315)
Q Consensus 273 ~~~~~~~~~~~~~~-------------~l~~~~~~a----------------------~~~~k~~l~~~~~~~l~~~l 315 (315)
. +++.+.+.++++ +++..+|.+ ...+|+.++.+...+++++|
T Consensus 186 ~-~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l 262 (699)
T TIGR02440 186 Q-SILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGL 262 (699)
T ss_pred h-hHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHH
Confidence 9 999999999997 566666655 44556668888777777653
No 83
>KOG0016|consensus
Probab=100.00 E-value=2.4e-33 Score=229.42 Aligned_cols=227 Identities=18% Similarity=0.235 Sum_probs=190.7
Q ss_pred CCCceEEeC-CChhhHhhhhhhc-cCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhh
Q psy12573 23 PDNCIIVGE-GANTMDIGRSLLL-NNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELE 100 (315)
Q Consensus 23 ~~~~~~~~~-g~~~~~~~~~~l~-~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~ 100 (315)
..+.++++. ++ +.++.++ +|++.|+++.++| .++..+|.....|+++.+++++|.|+.||+|.|+.
T Consensus 5 ~~~~~vv~~~~g----~~~I~~~~~Pkk~Nal~~e~y--------~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~ 72 (266)
T KOG0016|consen 5 RYREIVVTRENG----PFFIALNIRPKKKNALNREDY--------VYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFS 72 (266)
T ss_pred cccceEEEecCC----cEEEEecCCCcccccccHHHH--------HHHHHHHHHhhcccceEEEEEecCccEEeeccccc
Confidence 345566665 55 4566688 9999999999999 99999999999999999999999999999999998
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573 101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML 180 (315)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (315)
.+..... .|...-.+. .......+.....
T Consensus 73 ~~~~~~~--------------------------------------------~d~~~~~~~-------~~~~v~~~~~~v~ 101 (266)
T KOG0016|consen 73 PFAKALD--------------------------------------------DDANEESDK-------ASKFVKNVSCFVN 101 (266)
T ss_pred hhhhcCC--------------------------------------------Ccccccchh-------hHHHHHHHHHHHH
Confidence 7754111 111110000 0011112223556
Q ss_pred HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQ 259 (315)
Q Consensus 181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~ 259 (315)
.+..+|||+||.|+|+++|.|..+.-.||+++|+|.++|..|+..+|..|++++ +.+++++|...|.|+++.|++++++
T Consensus 102 ~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~ 181 (266)
T KOG0016|consen 102 TFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQ 181 (266)
T ss_pred HHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHH
Confidence 678999999999999999999999999999999999999999999999999855 7899999999999999999999999
Q ss_pred HHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573 260 DAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE 313 (315)
Q Consensus 260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~ 313 (315)
||.+.|+|+++++. +.+.+.+..-++++++.+|.+++..|++++......|.+
T Consensus 182 Ea~~~glVskif~~-~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~ 234 (266)
T KOG0016|consen 182 EACEKGLVSKIFPA-ETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIK 234 (266)
T ss_pred HHHhcCchhhhcCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999877666544
No 84
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-33 Score=221.90 Aligned_cols=216 Identities=22% Similarity=0.264 Sum_probs=179.0
Q ss_pred CCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC--C-Cccccchhhh
Q psy12573 24 DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD--S-AFGFSGMELE 100 (315)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~--g-~~~~aG~Dl~ 100 (315)
-++|+....-. .++.||+|||+.+|++.|... .+|..++..+..|+++-||+|||. | ..||+|+|-+
T Consensus 17 y~dI~Y~~~~~--giakItinRPevrNAfrP~TV--------~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~ 86 (282)
T COG0447 17 YEDITYEKSVD--GIAKITINRPEVRNAFRPKTV--------DEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQK 86 (282)
T ss_pred cceeEEeeccC--ceEEEEecChhhhccCCCccH--------HHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCce
Confidence 35555543211 389999999999999999998 999999999999999999999974 4 6678899854
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573 101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML 180 (315)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (315)
.--. +..+ ..+. ..+.. . .-.+.+
T Consensus 87 vRg~----------------------------------------~~gY--------~~d~---~~~rL-n----vLdlQr 110 (282)
T COG0447 87 VRGD----------------------------------------SGGY--------VDDD---GIPRL-N----VLDLQR 110 (282)
T ss_pred eccc----------------------------------------CCCc--------cCCc---cCccc-c----hhhHHH
Confidence 2211 0000 0000 01111 1 113455
Q ss_pred HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQ 259 (315)
Q Consensus 181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~ 259 (315)
.++.+||||||.|+|+++|||-.|-+.||+.+|++.++|+....++|-+..+ ++..|++.+|...|+|+.+.++.++|+
T Consensus 111 lIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~ 190 (282)
T COG0447 111 LIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAE 190 (282)
T ss_pred HHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHH
Confidence 7889999999999999999999999999999999999999999999998665 778899999999999999999999999
Q ss_pred HHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573 260 DAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ 306 (315)
Q Consensus 260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~ 306 (315)
||+++|+||.|+|. ++|++++.++++.+.++||.+++..|.+++..
T Consensus 191 eal~MGlVN~Vvp~-~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad 236 (282)
T COG0447 191 EALDMGLVNTVVPH-ADLEKETVQWAREMLAKSPTALRMLKAAFNAD 236 (282)
T ss_pred HHHhcCceeeeccH-HHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Confidence 99999999999999 99999999999999999999999999988764
No 85
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.98 E-value=4.7e-32 Score=262.48 Aligned_cols=188 Identities=21% Similarity=0.241 Sum_probs=163.1
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++.+|||+|++.|+++..++ .+|.+++++++.|+++++|||+|.|+.||+|+|++++...... +
T Consensus 17 va~Itlnrp~~~Nal~~~~~--------~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~------- 80 (714)
T TIGR02437 17 IAELKFDAPGSVNKFDRATL--------ASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFAL-P------- 80 (714)
T ss_pred EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccC-C-------
Confidence 78889999999999999998 9999999999999999999999999999999999876420000 0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.. +...+......++..+..+|||+||+|+|+|
T Consensus 81 ------------------------------------~~-----------~~~~~~~~~~~~~~~i~~~pkPvIAai~G~a 113 (714)
T TIGR02437 81 ------------------------------------DA-----------ELIQWLLFANSIFNKLEDLPVPTVAAINGIA 113 (714)
T ss_pred ------------------------------------HH-----------HHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 00 0001122234566788899999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
+|||++|+++||+|+++++++|++||+++|++|+++ ++++++++|...+++++++|+.+++++|+++|+++++++. ++
T Consensus 114 lGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~-~~ 192 (714)
T TIGR02437 114 LGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTA-DK 192 (714)
T ss_pred ecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh-hH
Confidence 999999999999999999999999999999999985 5789999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHH
Q psy12573 277 LESETKVLTSAIL 289 (315)
Q Consensus 277 ~~~~~~~~~~~l~ 289 (315)
+.+.+.++++++.
T Consensus 193 l~~~a~~~a~~~~ 205 (714)
T TIGR02437 193 LGAAALQLLKDAI 205 (714)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999997744
No 86
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.97 E-value=6.9e-31 Score=254.89 Aligned_cols=199 Identities=17% Similarity=0.222 Sum_probs=161.8
Q ss_pred CCCCceEEeC-CChhhHhhhhhhccCC-CcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE-EEEcCCCccccchh
Q psy12573 22 IPDNCIIVGE-GANTMDIGRSLLLNNL-PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV-CVQGDSAFGFSGME 98 (315)
Q Consensus 22 ~~~~~~~~~~-g~~~~~~~~~~l~~~~-~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv-vl~g~g~~~~aG~D 98 (315)
+..+.+.+.. ++ ++.+|||+|+ +.|+++..++ .+|.+++++++.|+++|+| +++|.|+.||+|+|
T Consensus 10 ~~~~~~~~~~~~g----Va~itlnrP~~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~D 77 (737)
T TIGR02441 10 MARTHRHYEVKGD----VAVVKIDSPNSKVNTLSKELF--------AEFKEVMNELWTNEAIKSAVLISGKPGSFVAGAD 77 (737)
T ss_pred CCCCeEEEEEECC----EEEEEEcCCCCCCCCCCHHHH--------HHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcC
Confidence 3445554443 54 8889999998 5899999888 9999999999999999965 56999999999999
Q ss_pred hhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHH
Q psy12573 99 LETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDL 178 (315)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (315)
++++... .+ .. +...+......+
T Consensus 78 l~~~~~~-~~-~~-------------------------------------------------------~~~~~~~~~~~l 100 (737)
T TIGR02441 78 IQMIAAC-KT-AQ-------------------------------------------------------EVTQLSQEGQEM 100 (737)
T ss_pred HHHHhcc-CC-hH-------------------------------------------------------HHHHHHHHHHHH
Confidence 9877420 00 00 000122233456
Q ss_pred HHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCC--ceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCC
Q psy12573 179 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIP 255 (315)
Q Consensus 179 ~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~--a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~ 255 (315)
+..+.++||||||+|+|+|+|||++|+++||+++++++ ++|++||+++|++|+++ ++++++++|...+++++++|++
T Consensus 101 ~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~ 180 (737)
T TIGR02441 101 FERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKK 180 (737)
T ss_pred HHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCc
Confidence 77889999999999999999999999999999999987 58999999999999885 4789999999999999999999
Q ss_pred CCHHHHHHcCccccccCCc------------hHHHHHHHHHHHHHH
Q psy12573 256 ISAQDAYNAGLITRVVSSN------------EELESETKVLTSAIL 289 (315)
Q Consensus 256 ~~a~~a~~~Glv~~v~~~~------------~~~~~~~~~~~~~l~ 289 (315)
+++++|+++|+|+++++.. +++.+.+.+++.+++
T Consensus 181 i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~ 226 (737)
T TIGR02441 181 IRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLA 226 (737)
T ss_pred CCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhh
Confidence 9999999999999999851 346677777776654
No 87
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.97 E-value=1e-30 Score=217.13 Aligned_cols=185 Identities=29% Similarity=0.401 Sum_probs=162.3
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
++.++||+|++.|+++..++ .+|.++++.++.|+++++|||+|.|+.||+|.|++++.....
T Consensus 9 i~~i~l~~~~~~N~~~~~~~--------~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~---------- 70 (195)
T cd06558 9 VATITLNRPEKRNALSLEML--------DELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSD---------- 70 (195)
T ss_pred EEEEEECCccccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccc----------
Confidence 67788999999999999888 999999999999999999999999999999999998753100
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.. + ....+...+..++..+..+|||+|++++|++
T Consensus 71 ---------------------------~~------~-------------~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a 104 (195)
T cd06558 71 ---------------------------AG------E-------------EARAFIRELQELLRALLRLPKPVIAAVNGAA 104 (195)
T ss_pred ---------------------------cc------h-------------hHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 00 0 0013344556777888999999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~ 276 (315)
.|+|++++++||++++++.++|++||.++|++|.. ..+.+.+++|...+++++++|+.++++||+++|+++++++. ++
T Consensus 105 ~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-~~ 183 (195)
T cd06558 105 LGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPD-EE 183 (195)
T ss_pred ecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCh-hH
Confidence 99999999999999999999999999999999766 45789999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHH
Q psy12573 277 LESETKVLTSA 287 (315)
Q Consensus 277 ~~~~~~~~~~~ 287 (315)
+.+.+.+++++
T Consensus 184 l~~~a~~~a~~ 194 (195)
T cd06558 184 LLAAALELARR 194 (195)
T ss_pred HHHHHHHHHhh
Confidence 99998888875
No 88
>KOG1682|consensus
Probab=99.97 E-value=5e-30 Score=201.65 Aligned_cols=208 Identities=40% Similarity=0.645 Sum_probs=183.9
Q ss_pred hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573 38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS 117 (315)
Q Consensus 38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~ 117 (315)
+..|+|++|+++|.++..|+ .+|.+.|....++.+.|+|||+..|+.|++|.||+++..+.
T Consensus 42 vR~i~l~npKk~NtLSLaM~--------~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~----------- 102 (287)
T KOG1682|consen 42 VREITLNNPKKLNTLSLAMM--------CALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEP----------- 102 (287)
T ss_pred eeeeeecCccccchhhHHHH--------HHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCc-----------
Confidence 67788999999999998887 99999998888888999999999999999999999986421
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
|.|+. ...+..+...+..++++|.|||+.|+|++
T Consensus 103 ---------------------------------g~d~h-------------aevFqtc~dvmn~Irn~pVPVia~VNG~A 136 (287)
T KOG1682|consen 103 ---------------------------------GSDIH-------------AEVFQTCTDVMNDIRNLPVPVIAKVNGYA 136 (287)
T ss_pred ---------------------------------cchHH-------------HHHHHHHHHHHHHHhcCCCceEEEecchh
Confidence 11211 03444556677789999999999999999
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
.+.|++|..+||++++++..+|..|...+|++...++..++|.+++..+.+|++||.+++++||+..|++++++|. +++
T Consensus 137 aAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~-~el 215 (287)
T KOG1682|consen 137 AAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPA-EEL 215 (287)
T ss_pred hhccceEEEeeeEEEEecCccccCCCCceeeEecCcchhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCH-HHH
Confidence 9999999999999999999999999999999977778889999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCCh
Q psy12573 278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNI 311 (315)
Q Consensus 278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l 311 (315)
+.++.++++.|...+.......|+........+-
T Consensus 216 ~~e~~~i~~~i~~~srav~slgk~f~y~q~~ms~ 249 (287)
T KOG1682|consen 216 DKEIEEITNAIKAKSRAVISLGKEFYYKQLAMSQ 249 (287)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999988776655443
No 89
>KOG1684|consensus
Probab=99.94 E-value=2e-26 Score=196.50 Aligned_cols=186 Identities=22% Similarity=0.251 Sum_probs=152.1
Q ss_pred CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC-CCccccchhhhH
Q psy12573 24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD-SAFGFSGMELET 101 (315)
Q Consensus 24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~-g~~~~aG~Dl~~ 101 (315)
.+.++++. |. ...+|||||+.+||++.+|. ..+.-.|.+|+.++.+++||+.|. |+.||+|+|++.
T Consensus 37 ~~~VL~e~~~~----~r~itLNRPKaLNAlnleMv--------~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~ 104 (401)
T KOG1684|consen 37 KDQVLVEGKGC----ARVITLNRPKALNALNLEMV--------LSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKA 104 (401)
T ss_pred CCceEEecCCc----eeEEEecCchhhccccHHHH--------HHHHHHHHhhccCCCceEEEEecCCCceeecCccHHH
Confidence 45566655 44 46678999999999999998 999999999999999999999888 677888999986
Q ss_pred HhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHH
Q psy12573 102 LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLS 181 (315)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (315)
......+ . ..++.+.++..-..+...
T Consensus 105 ~ae~~~d---------------------------------------------------~---~~~~~~~fF~~eYsl~~~ 130 (401)
T KOG1684|consen 105 VAESIKD---------------------------------------------------K---ETPEVKKFFTEEYSLNHL 130 (401)
T ss_pred HHHHhhc---------------------------------------------------C---CchHHHHHHHHHHHHHHH
Confidence 5431000 0 011122445555567778
Q ss_pred HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQD 260 (315)
Q Consensus 182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~ 260 (315)
+....||.||.++|-.+|||+.|...+.+|||+|.+.|.+||..+|+.|++++ +.+++.-| .....+-+||.++++.+
T Consensus 131 igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD 209 (401)
T KOG1684|consen 131 IGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGAD 209 (401)
T ss_pred HHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchH
Confidence 88999999999999999999999999999999999999999999999999966 56666555 78889999999999999
Q ss_pred HHHcCccccccCCchHH
Q psy12573 261 AYNAGLITRVVSSNEEL 277 (315)
Q Consensus 261 a~~~Glv~~v~~~~~~~ 277 (315)
++..|+.++.+++ +.+
T Consensus 210 ~~~~GlATHyv~S-~~l 225 (401)
T KOG1684|consen 210 ALRCGLATHYVPS-EKL 225 (401)
T ss_pred HHHhcchhhccch-hhh
Confidence 9999999988876 443
No 90
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.93 E-value=7.9e-25 Score=204.12 Aligned_cols=175 Identities=15% Similarity=0.197 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHH-cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHH-HHHHHHHHHhcCCCcEEEE
Q psy12573 115 IFSTCSDLMLSIL-RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVS-TCSDLMLSILRHPVPILAI 192 (315)
Q Consensus 115 ~~~~~~~~~~~~~-~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kpvIa~ 192 (315)
.+..+...+..+. .++...+.++.| ++|+.||+|.|+..+................ ....+...+..+|||+||+
T Consensus 49 ~l~eL~~al~~~~~~d~~vRvVVLtg---~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAA 125 (546)
T TIGR03222 49 VDIELHDAVQRIRFEHPEVRTVVMTS---GKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAA 125 (546)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEec---CCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3445667777777 566666666665 2468999999998764321000000001111 1123444567899999999
Q ss_pred EccccchhhhHHHhhcCeeeeeCC--ceeeCCCcc-CCCCCCchH-HHHh--hhcCHHHHHHHHhcCCCCCHHHHHHcCc
Q psy12573 193 ISGVAAAAGCQLVATCDLAIATTA--SKFSTPGAR-HGIFCSTPA-VALT--RKVPLGVVRSMTITGIPISAQDAYNAGL 266 (315)
Q Consensus 193 v~G~~~g~G~~l~l~~d~~~a~~~--a~~~~pe~~-~Gl~~~~~~-~~l~--~~~g~~~a~~~~~~g~~~~a~~a~~~Gl 266 (315)
|+|+|+|||++|+++||+++++++ ++|++||++ +|++|.+++ .++. ++++..++++++++|+.++++||+++|+
T Consensus 126 VnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GL 205 (546)
T TIGR03222 126 VNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRL 205 (546)
T ss_pred ECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCC
Confidence 999999999999999999999986 799999997 999998855 5565 6899999999999999999999999999
Q ss_pred cccccCCchHHHHHHHHHHHHHHhCCH
Q psy12573 267 ITRVVSSNEELESETKVLTSAILENSR 293 (315)
Q Consensus 267 v~~v~~~~~~~~~~~~~~~~~l~~~~~ 293 (315)
|+++++. +++.+.+.+++++|+..||
T Consensus 206 V~~vv~~-~~l~~~a~~lA~~la~~~p 231 (546)
T TIGR03222 206 VDEVVKP-SQFDAAIAERAAELAAQSD 231 (546)
T ss_pred ceEEeCh-HHHHHHHHHHHHHHHhCCC
Confidence 9999999 9999999999999998877
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.92 E-value=3.9e-24 Score=200.16 Aligned_cols=177 Identities=16% Similarity=0.207 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHH-cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHH-HHHHHHHHhcCCCcEEE
Q psy12573 114 EIFSTCSDLMLSIL-RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVST-CSDLMLSILRHPVPILA 191 (315)
Q Consensus 114 ~~~~~~~~~~~~~~-~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~kpvIa 191 (315)
..+..+...+..+. .++...+.++.| ++|+.||+|.|+..+.+...-........... ...+...+.++|||+||
T Consensus 52 ~m~~eL~~al~~~~~~d~~vrvVVLtg---~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 52 GVDIELHDALQRIRFEHPEVRTVVVTS---AKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEec---CCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 33445666677766 566666666654 13589999999987643210000000011111 12234466789999999
Q ss_pred EEccccchhhhHHHhhcCeeeeeCC--ceeeCCCcc-CCCCCCchH-HHHh--hhcCHHHHHHHHhcCCCCCHHHHHHcC
Q psy12573 192 IISGVAAAAGCQLVATCDLAIATTA--SKFSTPGAR-HGIFCSTPA-VALT--RKVPLGVVRSMTITGIPISAQDAYNAG 265 (315)
Q Consensus 192 ~v~G~~~g~G~~l~l~~d~~~a~~~--a~~~~pe~~-~Gl~~~~~~-~~l~--~~~g~~~a~~~~~~g~~~~a~~a~~~G 265 (315)
+|+|+|+|||++|+++||+++++++ ++|++||.+ +|++|.+++ .++. ++++...+++++++|+.++++||+++|
T Consensus 129 AVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~G 208 (550)
T PRK08184 129 AVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWR 208 (550)
T ss_pred EECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcC
Confidence 9999999999999999999999987 899999997 999998754 5676 679999999999999999999999999
Q ss_pred ccccccCCchHHHHHHHHHHHHHHhCCHH
Q psy12573 266 LITRVVSSNEELESETKVLTSAILENSRS 294 (315)
Q Consensus 266 lv~~v~~~~~~~~~~~~~~~~~l~~~~~~ 294 (315)
+|+++++. +++.+.+.+++++|+.++|.
T Consensus 209 LVd~vv~~-d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 209 LVDEVVKP-SKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CccEeeCH-HHHHHHHHHHHHHHHhCCCC
Confidence 99999999 99999999999999988774
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.65 E-value=1.6e-15 Score=123.59 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=108.3
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG 145 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G 145 (315)
.+|.+++.+++.|+++++|||+++ |.|+|+....
T Consensus 25 ~~l~~~l~~a~~d~~v~~vvl~~~----~~gg~~~~~~------------------------------------------ 58 (177)
T cd07014 25 DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTASE------------------------------------------ 58 (177)
T ss_pred HHHHHHHHHHhcCCCceEEEEEee----CCCcCHHHHH------------------------------------------
Confidence 899999999999999999999873 5555543110
Q ss_pred chhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCcc
Q psy12573 146 CQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR 225 (315)
Q Consensus 146 ~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~ 225 (315)
.+...+..+.+++|||||+++|.+.|+|++|+++||++++++.++|+++.+.
T Consensus 59 ----------------------------~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~ 110 (177)
T cd07014 59 ----------------------------VIRAELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIF 110 (177)
T ss_pred ----------------------------HHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCEEEECCCCeEEEechH
Confidence 0122344566789999999999999999999999999999999999998776
Q ss_pred CCCCCCch-HH--------HHhhhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHH
Q psy12573 226 HGIFCSTP-AV--------ALTRKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESE 280 (315)
Q Consensus 226 ~Gl~~~~~-~~--------~l~~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~ 280 (315)
.+..+... .. .+++..+ ....++++..|..+++++|++.|||+++.+. +++.+.
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~-~e~~~~ 175 (177)
T cd07014 111 GVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSF-DDAVAK 175 (177)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCH-HHHHHH
Confidence 65321110 01 2444444 6788999999999999999999999999987 776543
No 93
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.62 E-value=5.5e-15 Score=123.02 Aligned_cols=95 Identities=25% Similarity=0.333 Sum_probs=87.6
Q ss_pred CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573 5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83 (315)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v 83 (315)
++.|++|+++++.|++.+|+|.+++.| |.+..|.++. +..+.|+.++++..+++|||++|.+++++++. |+.+|
T Consensus 4 ~~~~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~----p~~~v 78 (202)
T cd02006 4 DDVPIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQM-LHVYKPRHWINCGQAGPLGWTVPAALGVAAAD----PDRQV 78 (202)
T ss_pred CCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-cCcCCCCeEEccCCccchhhhhHHHHhHHhhC----CCCeE
Confidence 566899999999999999999999999 8888888888 88888899999988999999999999999985 88899
Q ss_pred EEEEcCCCccccchhhhHHhh
Q psy12573 84 VCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 84 vvl~g~g~~~~aG~Dl~~~~~ 104 (315)
|+|+|||++.+++++|.++.+
T Consensus 79 v~i~GDG~f~m~~~eL~Ta~~ 99 (202)
T cd02006 79 VALSGDYDFQFMIEELAVGAQ 99 (202)
T ss_pred EEEEeChHhhccHHHHHHHHH
Confidence 999999999999999999876
No 94
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.60 E-value=1.4e-14 Score=119.84 Aligned_cols=93 Identities=25% Similarity=0.394 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
+|++|+++++.|++.+++|.+++.| |++..|..++ +..+.|.+++++..+++|||++|.+++++++. |+.+||+
T Consensus 2 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~----p~r~vv~ 76 (196)
T cd02013 2 NPMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSY-LRFEKPRSFIAPLSFGNCGYALPAIIGAKAAA----PDRPVVA 76 (196)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHh-cCcCCCCeEEcCCCCcccccHHHHHHHHHHhC----CCCcEEE
Confidence 6799999999999999999999999 8878888887 88889999999989999999999999999985 8889999
Q ss_pred EEcCCCccccchhhhHHhh
Q psy12573 86 VQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 86 l~g~g~~~~aG~Dl~~~~~ 104 (315)
++|||++.++.++|.++.+
T Consensus 77 i~GDG~f~m~~~eL~Ta~~ 95 (196)
T cd02013 77 IAGDGAWGMSMMEIMTAVR 95 (196)
T ss_pred EEcchHHhccHHHHHHHHH
Confidence 9999999999999998765
No 95
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.58 E-value=1.3e-14 Score=119.08 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=86.0
Q ss_pred HHHHHHhcCCCcEEEEEc---cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc---------------hHHHHh
Q psy12573 177 DLMLSILRHPVPILAIIS---GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST---------------PAVALT 238 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~---G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~---------------~~~~l~ 238 (315)
.++..+..+|||||++++ |+|.++|+.++++||++++++.++|+.++...+..+.. ....++
T Consensus 49 ~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (187)
T cd07020 49 EIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLA 128 (187)
T ss_pred HHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 355567789999999999 99999999999999999999999999999885544322 122577
Q ss_pred hhcCH--HHHHHHHhcCCCCCHHHHHHcCccccccCCch-HHHH
Q psy12573 239 RKVPL--GVVRSMTITGIPISAQDAYNAGLITRVVSSNE-ELES 279 (315)
Q Consensus 239 ~~~g~--~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~-~~~~ 279 (315)
++.|. ..+++++.+|+.++++||+++|++|+++++ + ++.+
T Consensus 129 ~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~-~~~~~~ 171 (187)
T cd07020 129 ELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAAD-LNELLK 171 (187)
T ss_pred HHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCC-HHHHHH
Confidence 78887 689999999999999999999999999988 4 4543
No 96
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.54 E-value=1.4e-13 Score=113.21 Aligned_cols=91 Identities=31% Similarity=0.487 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEE
Q psy12573 9 LNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ 87 (315)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~ 87 (315)
++|+++++.|++.+|+|.+++.| |.+..|..++ +..+.+.+++++..+++||+++|.+++.++.. ++.+||+++
T Consensus 1 ~~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~----~~~~vv~i~ 75 (186)
T cd02015 1 IKPQEVIKELSELTPGDAIVTTDVGQHQMWAAQY-YRFKKPRSWLTSGGLGTMGFGLPAAIGAKVAR----PDKTVICID 75 (186)
T ss_pred CCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHh-cccCCCCeEEeCCCccchhchHHHHHHHHHhC----CCCeEEEEE
Confidence 57889999999999999999999 7777888887 88889999999999999999999999999985 788999999
Q ss_pred cCCCccccchhhhHHhh
Q psy12573 88 GDSAFGFSGMELETLAV 104 (315)
Q Consensus 88 g~g~~~~aG~Dl~~~~~ 104 (315)
|||++.++..+|.+..+
T Consensus 76 GDG~f~~~~~eL~ta~~ 92 (186)
T cd02015 76 GDGSFQMNIQELATAAQ 92 (186)
T ss_pred cccHHhccHHHHHHHHH
Confidence 99999989999888765
No 97
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.51 E-value=3.4e-14 Score=128.61 Aligned_cols=177 Identities=14% Similarity=0.092 Sum_probs=128.0
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.+.+...+.++++|+|++++|+++|+|..++.+||++++++.++|++|+.+ |++++++..+.. .+++ |.
T Consensus 122 ~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L-~rl~--------G~- 191 (401)
T PLN02157 122 LYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNL-SHLP--------GR- 191 (401)
T ss_pred HHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHH-HHhh--------hH-
Confidence 344566788999999999999999999999999999999999999999999 999988876643 2222 53
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHH------Hhhhc---C---HHHHHHHHhcCC-CCCHHHHHH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVA------LTRKV---P---LGVVRSMTITGI-PISAQDAYN 263 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~------l~~~~---g---~~~a~~~~~~g~-~~~a~~a~~ 263 (315)
. |.+|+++++.+.+.++ ..+|++.... ... +...+ . ....++.+.... .....-..+
T Consensus 192 ~--a~~L~LTG~~i~A~eA-------~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~ 262 (401)
T PLN02157 192 L--GEYLGLTGLKLSGAEM-------LACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRR 262 (401)
T ss_pred H--HHHHHHcCCcCCHHHH-------HHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHH
Confidence 3 4999999999999999 7778775441 111 11111 1 124455554332 122222234
Q ss_pred cCccccccCCchHHHH---------------HHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573 264 AGLITRVVSSNEELES---------------ETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315 (315)
Q Consensus 264 ~Glv~~v~~~~~~~~~---------------~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l 315 (315)
..++++++.+ +++.+ ++.+..+.|.+.+|.+++.+.++++++...+|++||
T Consensus 263 ~~~i~~~f~~-~d~~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~ 328 (401)
T PLN02157 263 IDLLEKCFSH-DTVEEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCL 328 (401)
T ss_pred HHHHHHHhcC-CCHHHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHH
Confidence 5666777776 55544 344445678899999999999999999999999875
No 98
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.50 E-value=3e-13 Score=110.04 Aligned_cols=158 Identities=22% Similarity=0.200 Sum_probs=110.8
Q ss_pred HHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573 11 YYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 89 (315)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~ 89 (315)
|+++++.|++.+|++.++++| |+++.|..++ +..+++.+++++..+++|||++|.++++++.. |+.+||+|+||
T Consensus 1 p~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GD 75 (177)
T cd02010 1 PQRIVHDLRAVMGDDDIVLLDVGAHKIWMARY-YRTYAPNTCLISNGLATMGVALPGAIGAKLVY----PDRKVVAVSGD 75 (177)
T ss_pred CHHHHHHHHHHCCCCcEEEecCcHHHHHHHHh-CCcCCCCCEEeCCCChhhhhHHHHHHHHHHhC----CCCcEEEEEcc
Confidence 467899999999999999999 8888888887 88888889999999999999999999999985 88899999999
Q ss_pred CCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcC
Q psy12573 90 SAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK 162 (315)
Q Consensus 90 g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~ 162 (315)
|++++++++|.++.+...+ +..+ ..+.. ...... .+.. +..+ ...|+..+++.
T Consensus 76 G~f~m~~~eL~ta~~~~l~vi~vV~NN~~~----g~~~~-~~~~~~--~~~~----------~~~~-~~~d~~~~a~a-- 135 (177)
T cd02010 76 GGFMMNSQELETAVRLKIPLVVLIWNDNGY----GLIKW-KQEKEY--GRDS----------GVDF-GNPDFVKYAES-- 135 (177)
T ss_pred hHHHhHHHHHHHHHHHCCCeEEEEEECCcc----hHHHH-HHHHhc--CCcc----------cCcC-CCCCHHHHHHH--
Confidence 9999999999988652211 1100 00000 000000 0000 1122 23577777776
Q ss_pred CCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 163 FSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 163 ~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
|+.+..+ ....++...+......+.|.+..|
T Consensus 136 ~G~~~~~v~~~~el~~al~~a~~~~~p~liev 167 (177)
T cd02010 136 FGAKGYRIESADDLLPVLERALAADGVHVIDC 167 (177)
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 5555555 555566666666666778876554
No 99
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.49 E-value=2.9e-13 Score=128.03 Aligned_cols=155 Identities=26% Similarity=0.363 Sum_probs=117.1
Q ss_pred CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
...+|+++++.|++.+++|.|+++| |++++|.+++ ++...|++++++..+++||+++|.++++++.. |+.+||+
T Consensus 357 ~~~~p~~v~~~l~~~~~~daiv~~d~G~~~~w~a~~-~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~----P~r~Vv~ 431 (550)
T COG0028 357 DGIKPQYVIKVLRELLPDDAIVVTDVGQHQMWAARY-FDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAA----PDRKVVA 431 (550)
T ss_pred CccCHHHHHHHHHHhCCCCeEEEeCCcHHHHHHHHh-cccCCCCcEEcCCCCccccchHHHHHHHHhhC----CCCcEEE
Confidence 3347999999999999999999999 9999999999 88889999999999999999999999999996 8899999
Q ss_pred EEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEec--------------ccchhccc
Q psy12573 86 VQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAA--------------AGCQLVAT 151 (315)
Q Consensus 86 l~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g--------------~G~~f~~g 151 (315)
|+|||+|.|++++|.+..+... |- ++.++|--..| .+..|...
T Consensus 432 i~GDG~F~m~~qEL~Ta~r~~l--pv---------------------~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~ 488 (550)
T COG0028 432 IAGDGGFMMNGQELETAVRYGL--PV---------------------KIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNP 488 (550)
T ss_pred EEcccHHhccHHHHHHHHHhCC--CE---------------------EEEEEECCccccchHHHHHhcCCCcceeecCCc
Confidence 9999999999999999875221 10 11111111110 11222222
Q ss_pred cChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573 152 CDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAI 192 (315)
Q Consensus 152 ~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~ 192 (315)
. |..+++. |+....+ ....++...+......++|++..
T Consensus 489 ~-f~klAea--~G~~g~~v~~~~el~~al~~al~~~~p~lid 527 (550)
T COG0028 489 D-FVKLAEA--YGAKGIRVETPEELEEALEEALASDGPVLID 527 (550)
T ss_pred c-HHHHHHH--cCCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 2 6666666 6666666 66667777777778888887543
No 100
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.46 E-value=1.9e-12 Score=105.13 Aligned_cols=89 Identities=57% Similarity=0.867 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573 11 YYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 89 (315)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~ 89 (315)
|+++++.|++.+|+|.+++.| |.++.|..++ +..+.|..++++..+++||+++|.+++.++.. ++.++|+++||
T Consensus 1 p~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~----~~~~vv~i~GD 75 (172)
T cd02004 1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYI-LRPRKPRHRLDAGTFGTLGVGLGYAIAAALAR----PDKRVVLVEGD 75 (172)
T ss_pred CHHHHHHHHHHCCCCcEEEEcCchHHHHHHHH-ccccCCCcEecCCCCCcccchHHHHHHHHHhC----CCCeEEEEEcc
Confidence 467899999999999999999 8888888776 88888899999999999999999999999985 78899999999
Q ss_pred CCccccchhhhHHhh
Q psy12573 90 SAFGFSGMELETLAV 104 (315)
Q Consensus 90 g~~~~aG~Dl~~~~~ 104 (315)
|++++++.++.+..+
T Consensus 76 G~f~~~~~el~ta~~ 90 (172)
T cd02004 76 GAFGFSGMELETAVR 90 (172)
T ss_pred hhhcCCHHHHHHHHH
Confidence 998888888877654
No 101
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.44 E-value=2.1e-12 Score=105.34 Aligned_cols=92 Identities=28% Similarity=0.351 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy12573 8 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 86 (315)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl 86 (315)
|++|+++++.|++.+++|.+++.| |.++.|..+. ++.+.++.++++..+++||+++|.+++.++.. ++.++|++
T Consensus 1 ~~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~----~~~~vv~i 75 (178)
T cd02014 1 PIHPERVAAELNKRAPDDAIFTIDVGNVTVWAARH-LRMNGKQRFILSGLLATMGNGLPGAIAAKLAY----PDRQVIAL 75 (178)
T ss_pred CCCHHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHh-cccCCCCcEEcCCCCchhhhHHHHHHHHHHhC----CCCcEEEE
Confidence 588999999999999999999999 8888888877 88899999999999999999999999999975 77899999
Q ss_pred EcCCCccccchhhhHHhh
Q psy12573 87 QGDSAFGFSGMELETLAV 104 (315)
Q Consensus 87 ~g~g~~~~aG~Dl~~~~~ 104 (315)
+|||+++++.+++.++.+
T Consensus 76 ~GDG~f~~~~~el~t~~~ 93 (178)
T cd02014 76 SGDGGFAMLMGDLITAVK 93 (178)
T ss_pred EcchHHHhhHHHHHHHHH
Confidence 999999888888877654
No 102
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.44 E-value=2e-12 Score=107.82 Aligned_cols=88 Identities=19% Similarity=0.247 Sum_probs=79.9
Q ss_pred HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q psy12573 12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 90 (315)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g 90 (315)
.++++.|++.+++|.+++.| |++..|..++ ++.+.|..++++..+++|||++|.+++.+++. |+.++|+|+|||
T Consensus 2 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDG 76 (205)
T cd02003 2 TEVLGALNEAIGDDDVVINAAGSLPGDLHKL-WRARTPGGYHLEYGYSCMGYEIAAGLGAKLAK----PDREVYVLVGDG 76 (205)
T ss_pred hhHHHHHHHhCCCCCEEEECCCcchHHHHHh-CCcCCCCcEEcCCCcchhhhHHHHHHHHHHhC----CCCeEEEEEccc
Confidence 36788999999999999999 8899999887 88888899999989999999999999999985 888999999999
Q ss_pred CccccchhhhHHhh
Q psy12573 91 AFGFSGMELETLAV 104 (315)
Q Consensus 91 ~~~~aG~Dl~~~~~ 104 (315)
.+.+++++|.++.+
T Consensus 77 sf~m~~~eL~Ta~~ 90 (205)
T cd02003 77 SYLMLHSEIVTAVQ 90 (205)
T ss_pred hhhccHHHHHHHHH
Confidence 99999999998765
No 103
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.43 E-value=3.2e-13 Score=122.32 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
++..++++...+...+||+|++++|+++|+|..++..||++++++.++|++|+.+ |++++.+..+. +.+++
T Consensus 123 ~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~-L~rl~------- 194 (407)
T PLN02851 123 FFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYY-LSRLP------- 194 (407)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHH-HHHhc-------
Confidence 3445566777788999999999999999999999999999999999999999999 99998887653 33333
Q ss_pred ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHH-------Hhhh-cC-HHHHHHHHhc-CCC--C-CHH
Q psy12573 194 SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVA-------LTRK-VP-LGVVRSMTIT-GIP--I-SAQ 259 (315)
Q Consensus 194 ~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~-------l~~~-~g-~~~a~~~~~~-g~~--~-~a~ 259 (315)
|.. |.+|+++++.+.+.++ ..+|++.... ... +.+. -+ .....+.+.. ... . ...
T Consensus 195 -g~~---g~~L~LTG~~i~a~eA-------~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 263 (407)
T PLN02851 195 -GYL---GEYLALTGQKLNGVEM-------IACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSS 263 (407)
T ss_pred -CHH---HHHHHHhCCcCCHHHH-------HHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCccc
Confidence 542 5999999999999999 7778875542 111 1111 11 1111222211 110 0 111
Q ss_pred HHHHcCccccccCCchHH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573 260 DAYNAGLITRVVSSNEEL---------------ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315 (315)
Q Consensus 260 ~a~~~Glv~~v~~~~~~~---------------~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l 315 (315)
-......|++++.. +++ .+++++..+.|.+.||.++..+.++++++...+|++||
T Consensus 264 ~~~~~~~I~~~F~~-~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l 333 (407)
T PLN02851 264 VLHKIETIDKCFGH-DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCL 333 (407)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHH
Confidence 12224566666654 322 24666667889999999999999999999999999875
No 104
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.43 E-value=1.5e-12 Score=125.55 Aligned_cols=94 Identities=29% Similarity=0.406 Sum_probs=86.1
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.|++|+++++.|++.+++|.|++.| |++..|.++. ++.+.+..++++..+++|||++|.++++++.. |+.+||
T Consensus 363 ~~~l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~----p~~~Vv 437 (597)
T PRK08273 363 ADPVNPQRVFWELSPRLPDNAILTADSGSCANWYARD-LRMRRGMMASLSGTLATMGPAVPYAIAAKFAH----PDRPVI 437 (597)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-CCCCCCCeEEecCccccccchHHHHHHHHHhC----CCCcEE
Confidence 46899999999999999999999999 8888899887 88888888999999999999999999999985 889999
Q ss_pred EEEcCCCccccc-hhhhHHhh
Q psy12573 85 CVQGDSAFGFSG-MELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG-~Dl~~~~~ 104 (315)
+|+|||++++++ ++|.++.+
T Consensus 438 ~i~GDG~f~m~~~~EL~Ta~r 458 (597)
T PRK08273 438 ALVGDGAMQMNGMAELITVAK 458 (597)
T ss_pred EEEcchhHhccchHHHHHHHH
Confidence 999999999995 99999876
No 105
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.42 E-value=4.1e-12 Score=103.97 Aligned_cols=91 Identities=29% Similarity=0.329 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy12573 8 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 86 (315)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl 86 (315)
|++|.++++.|++.+++|.+++.| |++. |..+. +..++++.++++..+++||+++|.+++.++.. ++.++|++
T Consensus 1 ~l~~~~~~~~l~~~l~~~~iiv~d~g~~~-~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~----~~~~vv~i 74 (183)
T cd02005 1 PLTQARLWQQVQNFLKPNDILVAETGTSW-FGALD-LKLPKGTRFISQPLWGSIGYSVPAALGAALAA----PDRRVILL 74 (183)
T ss_pred CCCHHHHHHHHHHhcCCCCEEEECCchHH-Hhhhh-ccCCCCCEEEeccchhhHhhhHHHHHHHHHhC----CCCeEEEE
Confidence 789999999999999999999999 6664 66555 77788889999999999999999999999985 77899999
Q ss_pred EcCCCccccchhhhHHhh
Q psy12573 87 QGDSAFGFSGMELETLAV 104 (315)
Q Consensus 87 ~g~g~~~~aG~Dl~~~~~ 104 (315)
+|||+++++..++.++.+
T Consensus 75 ~GDG~f~~~~~el~ta~~ 92 (183)
T cd02005 75 VGDGSFQMTVQELSTMIR 92 (183)
T ss_pred ECCchhhccHHHHHHHHH
Confidence 999999888888887654
No 106
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.41 E-value=2.4e-12 Score=123.84 Aligned_cols=94 Identities=24% Similarity=0.317 Sum_probs=86.8
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.+++|+++++.|++.+++|.+++.| |++..|..++ +..+.|+.++++..+++|||++|.+|++++.. |+.+||
T Consensus 366 ~~~l~p~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~----pdr~Vv 440 (588)
T TIGR01504 366 NVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAGAQM-LHVYKPRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVV 440 (588)
T ss_pred CCCcCHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHh-ccccCCCcEEeCCccccccchHhHHHhhhhhC----CCCcEE
Confidence 45799999999999999999999999 7777888887 88888899999999999999999999999985 888999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||+++|++++|.+..+
T Consensus 441 ~i~GDG~f~m~~~EL~Ta~r 460 (588)
T TIGR01504 441 ALSGDYDFQFMIEELAVGAQ 460 (588)
T ss_pred EEEcchHhhccHHHHHHHHH
Confidence 99999999999999999876
No 107
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=99.41 E-value=4.2e-13 Score=121.17 Aligned_cols=174 Identities=14% Similarity=0.111 Sum_probs=124.6
Q ss_pred HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAA 200 (315)
Q Consensus 122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~ 200 (315)
+...+..+++|+|++++|+++|+|..++.+||++++++.++|++|+.+ |++++.+..+.. .+++ |. .
T Consensus 97 l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L-~rl~--------G~-~-- 164 (381)
T PLN02988 97 LNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFL-SRLP--------GF-F-- 164 (381)
T ss_pred HHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHH-HHHH--------HH-H--
Confidence 345678899999999999999999999999999999999999999999 999988876643 2322 54 2
Q ss_pred hhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HH-------HHhhhc--C---HHHHHHHHhcCCC-CCHHHHHHcCc
Q psy12573 201 GCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AV-------ALTRKV--P---LGVVRSMTITGIP-ISAQDAYNAGL 266 (315)
Q Consensus 201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~-------~l~~~~--g---~~~a~~~~~~g~~-~~a~~a~~~Gl 266 (315)
|.+|++++..+.+.++ ..+|++.... .. .+.+.. . ...+++.+..... ........+..
T Consensus 165 ~~~l~LTG~~i~a~eA-------~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (381)
T PLN02988 165 GEYVGLTGARLDGAEM-------LACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDV 237 (381)
T ss_pred HHHHHHcCCCCCHHHH-------HHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Confidence 4899999999999999 7778875541 11 122111 1 1223333321110 01122234567
Q ss_pred cccccCCchHHH---------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573 267 ITRVVSSNEELE---------------SETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315 (315)
Q Consensus 267 v~~v~~~~~~~~---------------~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l 315 (315)
|++++.. +++. +++++..+.|.+.+|.+++.+.++++++...+|.+||
T Consensus 238 I~~~f~~-~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~ 300 (381)
T PLN02988 238 IDRCFSR-RTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCL 300 (381)
T ss_pred HHHHhCC-CCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHH
Confidence 7777765 3322 4666667889999999999999999999999998875
No 108
>KOG1185|consensus
Probab=99.40 E-value=5.1e-12 Score=112.80 Aligned_cols=97 Identities=67% Similarity=1.082 Sum_probs=91.7
Q ss_pred CCCCCCCHHHHHHHHHhhCC-CCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573 4 DESVPLNYYAAIHAVQVSIP-DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 82 (315)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~ 82 (315)
..+.|++++.+++.|++.+| +|.|+|+||.+++.+++..+....|+..+|.+.+++||.++..+|++++.. |+.+
T Consensus 375 ~~~~pLN~~~~~~~vre~L~~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~----P~~~ 450 (571)
T KOG1185|consen 375 KKSTPLNYYQVLQTVRELLPNDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAA----PDRK 450 (571)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCCcEEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhC----CCCe
Confidence 45679999999999999999 889999999999999999999999999999999999999999999999986 9999
Q ss_pred EEEEEcCCCccccchhhhHHhh
Q psy12573 83 VVCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 83 vvvl~g~g~~~~aG~Dl~~~~~ 104 (315)
|+++.||+.|-||+++++++.+
T Consensus 451 V~~veGDsaFGfSaME~ET~vR 472 (571)
T KOG1185|consen 451 VVCVEGDSAFGFSAMELETFVR 472 (571)
T ss_pred EEEEecCcccCcchhhHHHHHH
Confidence 9999999999999999999976
No 109
>PRK12474 hypothetical protein; Provisional
Probab=99.39 E-value=6.1e-12 Score=119.53 Aligned_cols=176 Identities=19% Similarity=0.204 Sum_probs=116.1
Q ss_pred CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573 5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83 (315)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v 83 (315)
.+.|++|+++++.|++.+++|.|++.| |++..|..+. +....|+.++++.. ++|||++|.+++++++. |+.+|
T Consensus 337 ~~~~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~-~~~~~p~~~~~~~~-gsmG~glpaAiGa~lA~----p~r~v 410 (518)
T PRK12474 337 PKGALNSLGVAQLIAHRTPDQAIYADEALTSGLFFDMS-YDRARPHTHLPLTG-GSIGQGLPLAAGAAVAA----PDRKV 410 (518)
T ss_pred CCCCcCHHHHHHHHHHHCCCCeEEEECCCcCHHHHHHh-hcccCCCCEEccCC-CccCccHHHHHHHHHHC----CCCcE
Confidence 345799999999999999999999999 7778887766 87778888887755 99999999999999985 88999
Q ss_pred EEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEE-EeeEEecccchhcc-ccChhhhhhhc
Q psy12573 84 VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAI-ISGVAAAAGCQLVA-TCDLAIATTAS 161 (315)
Q Consensus 84 vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~G~~~g~G~~f~~-g~D~~~~~~~~ 161 (315)
|+|+|||++.|++++|.++.+... |-. +..+||.-+.+.+..+..... ..+.....+..+.. ..|+..+++.
T Consensus 411 v~i~GDG~f~m~~qEL~Ta~r~~l--pv~---iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a- 484 (518)
T PRK12474 411 VCPQGDGGAAYTMQALWTMARENL--DVT---VVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEG- 484 (518)
T ss_pred EEEEcCchhcchHHHHHHHHHHCC--CcE---EEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHH-
Confidence 999999999999999999986321 110 001111111110000000000 00000000111211 3588877777
Q ss_pred CCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 162 KFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
|+.+..+ ....++...+......++|.+..|
T Consensus 485 -~G~~~~rv~~~~eL~~al~~a~~~~~p~liev 516 (518)
T PRK12474 485 -LGVEASRATTAEEFSAQYAAAMAQRGPRLIEA 516 (518)
T ss_pred -CCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEE
Confidence 5666555 556667777777767788887654
No 110
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.39 E-value=4.6e-12 Score=121.84 Aligned_cols=94 Identities=28% Similarity=0.387 Sum_probs=86.4
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
..+++|.++++.|++.+++|.+++.| |++..|.+++ +..++|..++++..+++|||++|.+|+.++.. |+.+||
T Consensus 369 ~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv 443 (574)
T PRK07979 369 SEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALY-YPFDKPRRWINSGGLGTMGFGLPAALGVKMAL----PEETVV 443 (574)
T ss_pred CCCcCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHh-cccCCCCeEEeCCCccchhhHHHHHHHHHHhC----CCCeEE
Confidence 34799999999999999999999999 7778888887 88889999999999999999999999999985 888999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||+|.+++++|.++.+
T Consensus 444 ~i~GDG~f~m~~~eL~Ta~r 463 (574)
T PRK07979 444 CVTGDGSIQMNIQELSTALQ 463 (574)
T ss_pred EEEcchhhhccHHHHHHHHH
Confidence 99999999999999999876
No 111
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.39 E-value=4.2e-12 Score=122.00 Aligned_cols=94 Identities=26% Similarity=0.379 Sum_probs=86.1
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
..+++|.+++..|++.+++|.+++.| |.+..|..+. +..+.++.++++..+++|||++|.+|++++.. |+.+||
T Consensus 369 ~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv 443 (572)
T PRK08979 369 SERIKPQQVIETLYKLTNGDAYVASDVGQHQMFAALY-YPFDKPRRWINSGGLGTMGFGLPAAMGVKFAM----PDETVV 443 (572)
T ss_pred CCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHh-cCcCCCCeEEccCCcccccchhhHHHhhhhhC----CCCeEE
Confidence 34799999999999999999999999 7777888877 88899999999999999999999999999985 888999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++.|++++|.++.+
T Consensus 444 ~i~GDG~f~m~~~EL~Ta~r 463 (572)
T PRK08979 444 CVTGDGSIQMNIQELSTALQ 463 (572)
T ss_pred EEEcchHhhccHHHHHHHHH
Confidence 99999999999999999876
No 112
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.38 E-value=5.8e-12 Score=121.14 Aligned_cols=94 Identities=22% Similarity=0.354 Sum_probs=85.8
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.+++|+++++.|++.+|+|.|++.| |++..|..++ +..++|+.++++..+++|||++|.++++++.. |+.+||
T Consensus 371 ~~~l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~----p~r~Vv 445 (574)
T PRK06466 371 GGIIKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQY-YKFNKPNRWINSGGLGTMGFGLPAAMGVKLAF----PDQDVA 445 (574)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-ccccCCCcEEcCCCcchhhchHHHHHHHHHhC----CCCeEE
Confidence 45799999999999999999999999 7777888777 88888999999999999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++.+++++|.+..+
T Consensus 446 ~i~GDG~f~m~~~eL~Ta~r 465 (574)
T PRK06466 446 CVTGEGSIQMNIQELSTCLQ 465 (574)
T ss_pred EEEcchhhhccHHHHHHHHH
Confidence 99999999999999999876
No 113
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.38 E-value=7e-12 Score=120.72 Aligned_cols=94 Identities=23% Similarity=0.335 Sum_probs=86.6
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.+++|+++++.|++.+++|.|++.| |++..|..++ +..+.|+.++++..+++|||++|.++++++.. |+.+||
T Consensus 378 ~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~----p~~~Vv 452 (579)
T TIGR03457 378 GNWLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSY-LRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAA----PDRPVV 452 (579)
T ss_pred CCCcCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHh-cCcCCCCeEEcCCccccccchHHHHHhhhhhC----CCCcEE
Confidence 45799999999999999999999999 8888888877 88899999999988999999999999999985 888999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+++|||+|+|++++|.+..+
T Consensus 453 ~i~GDG~f~m~~~eL~Tavr 472 (579)
T TIGR03457 453 AYAGDGAWGMSMNEIMTAVR 472 (579)
T ss_pred EEEcchHHhccHHHHHHHHH
Confidence 99999999999999999876
No 114
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.38 E-value=5.8e-12 Score=121.38 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=116.0
Q ss_pred CCCCCHHHHHHHHHhhCC-CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573 6 SVPLNYYAAIHAVQVSIP-DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v 83 (315)
..+++|+++++.|++.++ +|.+++.| |++..|..++ +..++|..++++..+++|||++|.++++++.. |+.+|
T Consensus 377 ~~~l~~~~~~~~l~~~l~~~d~iv~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~----p~r~V 451 (595)
T PRK09107 377 DDVIMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQF-FGFEEPNRWMTSGGLGTMGYGLPAALGVQIAH----PDALV 451 (595)
T ss_pred CCCcCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHh-cccCCCCeEEcCCCchhhhhhHHHHHHHHHhC----CCCeE
Confidence 457999999999999997 58888889 7777888887 98999999999999999999999999999985 88899
Q ss_pred EEEEcCCCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhh
Q psy12573 84 VCVQGDSAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAI 156 (315)
Q Consensus 84 vvl~g~g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~ 156 (315)
|+|+|||++++++++|.++.+..-+ +.. ...+..... ... ... . .+..+....|+..
T Consensus 452 v~i~GDG~f~m~~~EL~Ta~r~~lpvi~vV~NN~~-y~~i~~~q~----~~~-~~~-~---------~~~~~~~~~d~~~ 515 (595)
T PRK09107 452 IDIAGDASIQMCIQEMSTAVQYNLPVKIFILNNQY-MGMVRQWQQ----LLH-GNR-L---------SHSYTEAMPDFVK 515 (595)
T ss_pred EEEEcCchhhccHHHHHHHHHhCCCeEEEEEeCCc-cHHHHHHHH----HHh-CCc-c---------ccccCCCCCCHHH
Confidence 9999999999999999998762211 000 001110000 000 000 0 0111111258887
Q ss_pred hhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 157 ATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 157 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
+++. |+....+ ....++...+.......+|.+..|
T Consensus 516 lA~a--~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV 551 (595)
T PRK09107 516 LAEA--YGAVGIRCEKPGDLDDAIQEMIDVDKPVIFDC 551 (595)
T ss_pred HHHH--CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 7776 5666555 556667777777666677775443
No 115
>PLN02470 acetolactate synthase
Probab=99.38 E-value=6.6e-12 Score=121.00 Aligned_cols=93 Identities=31% Similarity=0.361 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
.+++|+.+++.|++.+++|.|++.| |++..|.+++ +..+.|.+++++..+++|||++|.++++++.. |+.+||+
T Consensus 375 ~~l~~~~~~~~l~~~~~~d~iv~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~----p~~~Vv~ 449 (585)
T PLN02470 375 DAIPPQYAIQVLDELTDGNAIISTGVGQHQMWAAQW-YKYKEPRRWLTSGGLGAMGFGLPAAIGAAAAN----PDAIVVD 449 (585)
T ss_pred CCcCHHHHHHHHHhhCCCCEEEEECCcHHHHHHHHh-cccCCCCeEEcCCccccccchHHHHHHHHHhC----CCCcEEE
Confidence 5899999999999999999999999 7778888887 88889999999999999999999999999986 8889999
Q ss_pred EEcCCCccccchhhhHHhh
Q psy12573 86 VQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 86 l~g~g~~~~aG~Dl~~~~~ 104 (315)
|+|||++++++++|.++.+
T Consensus 450 i~GDG~f~m~~~eL~Ta~~ 468 (585)
T PLN02470 450 IDGDGSFIMNIQELATIHV 468 (585)
T ss_pred EEccchhhccHHHHHHHHH
Confidence 9999999999999999876
No 116
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.37 E-value=3.8e-12 Score=122.07 Aligned_cols=94 Identities=26% Similarity=0.381 Sum_probs=86.3
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.+++|.++++.|++.+++|.+++.| |++..|..+. +..+.+..++++..+++|||++|.++++++.. |+.+||
T Consensus 366 ~~~l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~----p~~~Vv 440 (566)
T PRK07282 366 ERVVQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQY-YPYQNERQLVTSGGLGTMGFGIPAAIGAKIAN----PDKEVI 440 (566)
T ss_pred CCCcCHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHh-cccCCCCcEecCCccccccchhhHhheeheec----CCCcEE
Confidence 45799999999999999999999999 7777888887 88889999999999999999999999999985 888999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++++++++|.++.+
T Consensus 441 ~i~GDG~f~m~~~eL~Ta~~ 460 (566)
T PRK07282 441 LFVGDGGFQMTNQELAILNI 460 (566)
T ss_pred EEEcchhhhccHHHHHHHHH
Confidence 99999999999999999876
No 117
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.37 E-value=7.1e-12 Score=120.75 Aligned_cols=94 Identities=24% Similarity=0.394 Sum_probs=86.8
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.+|+|+++++.|++.+|+|.|++.| |++..|..++ +..++|..++++..+++|||++|.+++++++. |+.+||
T Consensus 385 ~~~i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~----p~r~Vv 459 (587)
T PRK06965 385 SEIIKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQF-YRFNEPRRWINSGGLGTMGVGLPYAMGIKMAH----PDDDVV 459 (587)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHh-cccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEE
Confidence 45799999999999999999999999 7777888887 88999999999999999999999999999985 888999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++++++++|.++.+
T Consensus 460 ~i~GDGsf~m~~~eL~Ta~r 479 (587)
T PRK06965 460 CITGEGSIQMCIQELSTCLQ 479 (587)
T ss_pred EEEcchhhhcCHHHHHHHHH
Confidence 99999999999999999876
No 118
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.36 E-value=8.8e-12 Score=119.82 Aligned_cols=94 Identities=29% Similarity=0.397 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.|++|+.+++.|++.+++|.|++.| |++..|..++ +..+.++.++++..+++|||++|.++++++.. |+.+||
T Consensus 356 ~~~i~~~~~~~~l~~~l~~d~ii~~D~g~~~~~~~~~-~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~----p~r~Vv 430 (575)
T TIGR02720 356 EGPLQAYQVYRAINKIAEDDAIYSIDVGDININSNRH-LKMTPKNKWITSNLFATMGVGVPGAIAAKLNY----PDRQVF 430 (575)
T ss_pred CCCcCHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHh-CCcCCCCeEEcCCCcchhhchHHHHHHHHHhC----CCCcEE
Confidence 46899999999999999999999999 8888888887 88889999999988999999999999999975 888999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||+++|++++|.++.+
T Consensus 431 ~i~GDGsf~m~~~eL~Tavr 450 (575)
T TIGR02720 431 NLAGDGAFSMTMQDLLTQVQ 450 (575)
T ss_pred EEEcccHHHhhHHHHHHHHH
Confidence 99999999999999999875
No 119
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.36 E-value=7.9e-12 Score=119.62 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=85.2
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCC-CCeE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAP-GKRV 83 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~-~~~v 83 (315)
+.|++|+++++.|++.+|++.+++.| |++..|..++ +..+.+.+++++..+++|||++|.++++++.. + +.+|
T Consensus 344 ~~~i~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~~V 418 (549)
T PRK06457 344 DKPMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTARH-FRASGEQTFIFSAWLGSMGIGVPGSVGASFAV----ENKRQV 418 (549)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-CCCCCCCeEEeCCCcchhhhhHHHHHHHHhcC----CCCCeE
Confidence 46899999999999999999999999 8888888877 77788889999888999999999999999985 6 7899
Q ss_pred EEEEcCCCccccchhhhHHhh
Q psy12573 84 VCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 84 vvl~g~g~~~~aG~Dl~~~~~ 104 (315)
|+|+|||++++++++|.+..+
T Consensus 419 v~i~GDGsf~~~~~eL~Ta~~ 439 (549)
T PRK06457 419 ISFVGDGGFTMTMMELITAKK 439 (549)
T ss_pred EEEEcccHHhhhHHHHHHHHH
Confidence 999999999999999988765
No 120
>PRK06154 hypothetical protein; Provisional
Probab=99.36 E-value=1.6e-11 Score=117.71 Aligned_cols=95 Identities=31% Similarity=0.521 Sum_probs=85.7
Q ss_pred CCCCCCHHHHHHHHHhhCC-CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573 5 ESVPLNYYAAIHAVQVSIP-DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 82 (315)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~ 82 (315)
.+.||+|+.+++.|++.++ +|.|++.| |.+..|..++ +..+.|+.++++..+++|||++|.++++++.. |+.+
T Consensus 377 ~~~~l~p~~~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~----p~r~ 451 (565)
T PRK06154 377 DSTPINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPF-YVASRPGSYLGWGKTTQLGYGLGLAMGAKLAR----PDAL 451 (565)
T ss_pred CCCCcCHHHHHHHHHHhcCCCCEEEEECCcccHHHHHHh-CCCCCCCeEEccCCCcccccHHHHHHHHHHhC----CCCc
Confidence 3458999999999999997 48888889 8888888887 88888999999988999999999999999985 8899
Q ss_pred EEEEEcCCCccccchhhhHHhh
Q psy12573 83 VVCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 83 vvvl~g~g~~~~aG~Dl~~~~~ 104 (315)
||+++|||++.+++++|.++.+
T Consensus 452 Vv~i~GDG~f~m~~~EL~Ta~r 473 (565)
T PRK06154 452 VINLWGDAAFGMTGMDFETAVR 473 (565)
T ss_pred EEEEEcchHHhccHHHHHHHHH
Confidence 9999999999999999999876
No 121
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.35 E-value=2.2e-11 Score=99.41 Aligned_cols=90 Identities=30% Similarity=0.382 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEE
Q psy12573 9 LNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ 87 (315)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~ 87 (315)
++|+++++.|++.+|+|.+++.| |++..|..++ +..+.|...+++.. ++||+++|.+++.+++. ++.++|+++
T Consensus 1 ~~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~~~~-~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~----~~~~vv~i~ 74 (178)
T cd02002 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQ-LPLTRPGSYFTLRG-GGLGWGLPAAVGAALAN----PDRKVVAII 74 (178)
T ss_pred CCHHHHHHHHHhhCCCCeEEEecCCcccHHHHHh-cccCCCCCeeccCC-ccccchHHHHHHHHhcC----CCCeEEEEE
Confidence 57889999999999999999999 7888888877 77777888898888 99999999999999975 788999999
Q ss_pred cCCCccccchhhhHHhh
Q psy12573 88 GDSAFGFSGMELETLAV 104 (315)
Q Consensus 88 g~g~~~~aG~Dl~~~~~ 104 (315)
|||.+.+...++.++.+
T Consensus 75 GDG~f~~~~~el~ta~~ 91 (178)
T cd02002 75 GDGSFMYTIQALWTAAR 91 (178)
T ss_pred cCchhhccHHHHHHHHH
Confidence 99999888888887765
No 122
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.35 E-value=2.6e-12 Score=123.58 Aligned_cols=164 Identities=23% Similarity=0.317 Sum_probs=115.7
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.++++.++++.|++.+++|.+++.| |++..|..++ +..+.|..++++..+++|||++|.+|+.++.. ++.++|
T Consensus 369 ~~~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~----p~~~vv 443 (572)
T PRK06456 369 NGKLKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVF-WEVLEPRTFLTSSGMGTMGFGLPAAMGAKLAR----PDKVVV 443 (572)
T ss_pred CCCcCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHh-cCcCCCCcEEcCCCcccccchhHHHHHHHHhC----CCCeEE
Confidence 34799999999999999999999999 8778888887 77888889999988999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhh
Q psy12573 85 CVQGDSAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA 157 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~ 157 (315)
+|+|||++++++++|.+..+...+ +.. ...+...++ .. ...+. .+..|....|+..+
T Consensus 444 ~i~GDG~f~m~~~eL~Ta~~~~l~i~ivV~NN~~-yg~i~~~q~----~~-~~~~~----------~~~~~~~~~d~~~~ 507 (572)
T PRK06456 444 DLDGDGSFLMTGTNLATAVDEHIPVISVIFDNRT-LGLVRQVQD----LF-FGKRI----------VGVDYGPSPDFVKL 507 (572)
T ss_pred EEEccchHhcchHHHHHHHHhCCCeEEEEEECCc-hHHHHHHHH----Hh-hCCCc----------ccccCCCCCCHHHH
Confidence 999999999999999998762211 000 000110100 00 01110 01223234788888
Q ss_pred hhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573 158 TTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAI 192 (315)
Q Consensus 158 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~ 192 (315)
++. |+....+ ....++...+......++|.+..
T Consensus 508 A~a--~G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 541 (572)
T PRK06456 508 AEA--FGALGFNVTTYEDIEKSLKSAIKEDIPAVIR 541 (572)
T ss_pred HHH--CCCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 777 5655555 55666666666666667776543
No 123
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.35 E-value=1.4e-11 Score=118.64 Aligned_cols=169 Identities=22% Similarity=0.246 Sum_probs=115.0
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.|++|+.+++.+++.+++|.+++.| |.+..|..++ +..+.+..++++..+++|||++|.++++++.. ++.+||
T Consensus 356 ~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~----p~r~vv 430 (574)
T PRK09124 356 GKPIHPQYLARQISEFAADDAIFTCDVGTPTVWAARY-LKMNGKRRLLGSFNHGSMANAMPQALGAQAAH----PGRQVV 430 (574)
T ss_pred CCcCCHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHh-cccCCCCeEEecCCcccccchHHHHHHHHHhC----CCCeEE
Confidence 46899999999999999999999999 8888888887 88888899999889999999999999999985 888999
Q ss_pred EEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCC
Q psy12573 85 CVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS 164 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~ 164 (315)
+|+|||++.++.++|.+..+... +-. +..+||.-+.+.+..+. ..+. ...+..+ ...|+..+++. |+
T Consensus 431 ~i~GDGsf~m~~~eL~Ta~~~~l--pv~---ivV~NN~~~g~i~~~~~----~~~~-~~~~~~~-~~~d~~~lA~a--~G 497 (574)
T PRK09124 431 ALSGDGGFSMLMGDFLSLVQLKL--PVK---IVVFNNSVLGFVAMEMK----AGGY-LTDGTDL-HNPDFAAIAEA--CG 497 (574)
T ss_pred EEecCcHHhccHHHHHHHHHhCC--CeE---EEEEeCCccccHHHHHH----hcCC-ccccCcC-CCCCHHHHHHH--CC
Confidence 99999999999999999875221 100 00000000000000000 0000 0001112 23577777776 56
Q ss_pred Ccchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573 165 TPGYN-ILVSTCSDLMLSILRHPVPILAI 192 (315)
Q Consensus 165 ~~~~~-~~~~~~~~~~~~l~~~~kpvIa~ 192 (315)
.+..+ ....++...+......++|++..
T Consensus 498 ~~~~~v~~~~eL~~al~~a~~~~~p~lIe 526 (574)
T PRK09124 498 ITGIRVEKASELDGALQRAFAHDGPALVD 526 (574)
T ss_pred CeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 66555 55666666666665667776543
No 124
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.34 E-value=1.6e-11 Score=118.47 Aligned_cols=94 Identities=27% Similarity=0.405 Sum_probs=86.3
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.+++|.+++..|++.+|+|.|++.| |++..|..++ +..+.|++++++..+++|||++|.+++.++.. |+.+||
T Consensus 383 ~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~----p~r~vv 457 (588)
T PRK07525 383 PDYMHPRQALREIQKALPEDAIVSTDIGNNCSIANSY-LRFEKGRKYLAPGSFGNCGYAFPAIIGAKIAC----PDRPVV 457 (588)
T ss_pred CCCcCHHHHHHHHHHhCCCCcEEEECCcccHHHHHHh-cccCCCCeEEccccccccccHHHHHHHHHHhC----CCCcEE
Confidence 35899999999999999999999999 8878888887 88889999999999999999999999999985 888999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++++++++|.+..+
T Consensus 458 ~i~GDG~f~~~~~el~Ta~~ 477 (588)
T PRK07525 458 GFAGDGAWGISMNEVMTAVR 477 (588)
T ss_pred EEEcCchHhccHHHHHHHHH
Confidence 99999999999999998865
No 125
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.34 E-value=1.9e-11 Score=116.80 Aligned_cols=166 Identities=23% Similarity=0.314 Sum_probs=117.9
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.+++|.++++.|++.++++.+++.| |++..|..+. +....+..++.+..+++|||++|.++++++.. ++.+||
T Consensus 356 ~~~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~----~~~~vv 430 (539)
T TIGR02418 356 QAHLHPLEIIKAMQAIVTDDVTVTVDMGSHYIWMARY-FRSYRARHLLISNGMQTLGVALPWAIGAALVR----PNTKVV 430 (539)
T ss_pred CCCcCHHHHHHHHHhhCCCCCEEEECCcHHHHHHHHh-cccCCCCceecCCCccccccHHHHHHHHHHhC----CCCcEE
Confidence 45899999999999999999999999 8888888887 77888889988888999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhhhccCchhH----H-HHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhh
Q psy12573 85 CVQGDSAFGFSGMELETLAVDKEGRPKL----D-EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT 159 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~ 159 (315)
+|+|||++.+++++|.+..+...+ -. + ..+..+. ...... ... . .+..| ...|+..+++
T Consensus 431 ~i~GDGsf~m~~~eL~Ta~~~~lp--i~ivV~NN~~y~~~~-~~~~~~-~~~--~---------~~~~~-~~~d~~~lA~ 494 (539)
T TIGR02418 431 SVSGDGGFLFSSMELETAVRLKLN--IVHIIWNDNGYNMVE-FQEEMK-YQR--S---------SGVDF-GPIDFVKYAE 494 (539)
T ss_pred EEEcchhhhchHHHHHHHHHhCCC--eEEEEEECCcchHHH-HHHHHh-cCC--c---------ccccC-CCCCHHHHHH
Confidence 999999999999999998752211 00 0 0000000 000000 000 0 01122 2478888877
Q ss_pred hcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573 160 ASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS 194 (315)
Q Consensus 160 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~ 194 (315)
. |+.+..+ ....++...+......++|++..|.
T Consensus 495 a--~G~~~~~V~~~~eL~~al~~a~~~~~p~lIev~ 528 (539)
T TIGR02418 495 S--FGAKGLRVESPDQLEPTLRQAMEVEGPVVVDIP 528 (539)
T ss_pred H--CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 7 5666555 5566677777666677888876543
No 126
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.34 E-value=1.6e-11 Score=117.86 Aligned_cols=94 Identities=32% Similarity=0.357 Sum_probs=85.6
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
..||+|.++++.|++.+++|.|++.| |++..|..++ ++.+.|+.++++..+++|||++|.++++++.. |+.+||
T Consensus 362 ~~~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~----p~~~vv 436 (563)
T PRK08527 362 DEVLKPQWVIERVGELLGDDAIISTDVGQHQMWVAQF-YPFNYPRQLATSGGLGTMGYGLPAALGAKLAV----PDKVVI 436 (563)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-cccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEE
Confidence 35899999999999999999999999 7778888887 88888899999999999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++++++++|.+..+
T Consensus 437 ~i~GDG~f~m~~~eL~Ta~~ 456 (563)
T PRK08527 437 NFTGDGSILMNIQELMTAVE 456 (563)
T ss_pred EEecCchhcccHHHHHHHHH
Confidence 99999999999999988875
No 127
>PRK07586 hypothetical protein; Validated
Probab=99.34 E-value=1.6e-11 Score=116.66 Aligned_cols=171 Identities=20% Similarity=0.237 Sum_probs=115.4
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.|++|.++++.|++.+|+|.+++.| |++..|..++ +....+..++++.. ++|||++|.+++++++. |+.+||
T Consensus 334 ~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~----p~r~Vv 407 (514)
T PRK07586 334 TGALTPEAIAQVIAALLPENAIVVDESITSGRGFFPA-TAGAAPHDWLTLTG-GAIGQGLPLATGAAVAC----PDRKVL 407 (514)
T ss_pred CCCcCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHh-ccccCCCCEEccCC-cccccHHHHHHHHHHhC----CCCeEE
Confidence 56899999999999999999999999 7778888776 77778888888766 99999999999999985 889999
Q ss_pred EEEcCCCccccchhhhHHhhhccCchhH----H-HHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhc-cccChhhhh
Q psy12573 85 CVQGDSAFGFSGMELETLAVDKEGRPKL----D-EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV-ATCDLAIAT 158 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~-~g~D~~~~~ 158 (315)
+++|||++.+++++|.+..+... |-. + ..+..++... .......+.-. + .....+. ...|+..++
T Consensus 408 ~i~GDGsf~m~~~EL~Ta~~~~l--pv~ivV~NN~~y~~~~~~~-~~~~~~~~~~~---~---~~~~~~~~~~~d~~~lA 478 (514)
T PRK07586 408 ALQGDGSAMYTIQALWTQARENL--DVTTVIFANRAYAILRGEL-ARVGAGNPGPR---A---LDMLDLDDPDLDWVALA 478 (514)
T ss_pred EEEechHHHhHHHHHHHHHHcCC--CCEEEEEeCchhHHHHHHH-HHhcCCCCCcc---c---cccccCCCCCCCHHHHH
Confidence 99999999999999999876221 110 0 0011111100 00100000000 0 0001111 136888777
Q ss_pred hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 159 TASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 159 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
+. |+.+..+ ....++...+......++|.+..|
T Consensus 479 ~a--~G~~~~~V~~~~el~~al~~a~~~~~p~liev 512 (514)
T PRK07586 479 EG--MGVPARRVTTAEEFADALAAALAEPGPHLIEA 512 (514)
T ss_pred HH--CCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEE
Confidence 77 5655555 555566666666666788887655
No 128
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.33 E-value=1.7e-11 Score=117.58 Aligned_cols=94 Identities=30% Similarity=0.406 Sum_probs=85.2
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.+++|.++++.|++.+++|.|++.| |++..|..++ +..+.|..++++..+++|||++|.+++++++. ++.+||
T Consensus 370 ~~~l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~----p~~~vv 444 (570)
T PRK06725 370 ESELKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHF-YKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAK----EEELVI 444 (570)
T ss_pred CCCcCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHh-ccccCCCeEEccCCcccccchhhHHHhhHhhc----CCCeEE
Confidence 45899999999999999999999999 6667777777 88889999999999999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++.+++++|.++.+
T Consensus 445 ~i~GDG~f~~~~~el~Ta~~ 464 (570)
T PRK06725 445 CIAGDASFQMNIQELQTIAE 464 (570)
T ss_pred EEEecchhhccHHHHHHHHH
Confidence 99999999999999999865
No 129
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.33 E-value=1.6e-11 Score=117.52 Aligned_cols=165 Identities=19% Similarity=0.320 Sum_probs=116.7
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.++++.++++.|++.+++|.+++.| |++..|..++ +..+.++.++++..+++|||++|.++++++.. ++.+||
T Consensus 349 ~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~----p~~~vv 423 (548)
T PRK08978 349 GEAIYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQH-MRFTRPENFITSSGLGTMGFGLPAAIGAQVAR----PDDTVI 423 (548)
T ss_pred CCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHHh-cccCCCCeEEeCCchhhhhchHHHHHHHHHhC----CCCcEE
Confidence 35799999999999999999999999 7778888877 88888999999999999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhh
Q psy12573 85 CVQGDSAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA 157 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~ 157 (315)
+|+|||+|++++++|.++.+...+ +.. ...+....+ .. ..... .+..+....|+..+
T Consensus 424 ~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~-~~~~~~~~~----~~-~~~~~----------~~~~~~~~~d~~~l 487 (548)
T PRK08978 424 CVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQR-LGMVRQWQQ----LF-FDERY----------SETDLSDNPDFVML 487 (548)
T ss_pred EEEccchhhccHHHHHHHHHhCCCeEEEEEeCCc-cHHHHHHHH----HH-hCCcc----------eecCCCCCCCHHHH
Confidence 999999999999999988763211 110 011111110 00 00000 01122234688888
Q ss_pred hhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 158 TTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 158 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
++. |+....+ ....++...+.......+|.+..|
T Consensus 488 a~a--~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV 522 (548)
T PRK08978 488 ASA--FGIPGQTITRKDQVEAALDTLLNSEGPYLLHV 522 (548)
T ss_pred HHH--CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 777 5655555 555666666666666777775443
No 130
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.33 E-value=1.3e-11 Score=117.81 Aligned_cols=157 Identities=19% Similarity=0.234 Sum_probs=112.9
Q ss_pred CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
.|+++.++++.|++.+++|.+++.| |++. |..+. +..+.+++++.+..+++|||++|.++++++.. |+.+||+
T Consensus 354 ~~l~~~~~~~~l~~~l~~~~iiv~d~G~~~-~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv~ 427 (539)
T TIGR03393 354 SALSQENFWQTLQTFLRPGDIILADQGTSA-FGAAD-LRLPADVNFIVQPLWGSIGYTLPAAFGAQTAC----PNRRVIL 427 (539)
T ss_pred CccCHHHHHHHHHHhcCCCCEEEEccCchh-hhhhh-ccCCCCCeEEechhhhhhhhHHHHHHHHHhcC----CCCCeEE
Confidence 4799999999999999999999999 7665 66665 88888889999889999999999999999975 8899999
Q ss_pred EEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEec-------ccchh--ccccChhh
Q psy12573 86 VQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAA-------AGCQL--VATCDLAI 156 (315)
Q Consensus 86 l~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g-------~G~~f--~~g~D~~~ 156 (315)
|+|||++.|++++|.++.+.. . | .++.++|--.+| .+..+ ....|+..
T Consensus 428 i~GDG~f~m~~~EL~Ta~~~~--l--------------------p-i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~ 484 (539)
T TIGR03393 428 LIGDGSAQLTIQELGSMLRDK--Q--------------------H-PIILVLNNEGYTVERAIHGAEQRYNDIALWNWTH 484 (539)
T ss_pred EEcCcHHHhHHHHHHHHHHcC--C--------------------C-CEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHH
Confidence 999999999999999987621 1 1 122222221111 11111 11257776
Q ss_pred hhhhcCCCCc----chh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573 157 ATTASKFSTP----GYN-ILVSTCSDLMLSILRHPVPILAIIS 194 (315)
Q Consensus 157 ~~~~~~~~~~----~~~-~~~~~~~~~~~~l~~~~kpvIa~v~ 194 (315)
+++. |+.+ ..+ ....++...+......++|++..|.
T Consensus 485 la~a--~G~~~~~~~~~v~~~~el~~al~~a~~~~~p~liev~ 525 (539)
T TIGR03393 485 LPQA--LSLDPQSECWRVSEAEQLADVLEKVAAHERLSLIEVV 525 (539)
T ss_pred HHHH--cCCCCccceEEeccHHHHHHHHHHHhccCCeEEEEEE
Confidence 6665 4442 334 5556666677777777888765543
No 131
>PRK05858 hypothetical protein; Provisional
Probab=99.33 E-value=1.7e-11 Score=117.17 Aligned_cols=166 Identities=26% Similarity=0.383 Sum_probs=117.8
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.|++|.++++.|++.+|+|.+++.| |++..|..++ +...+|++++++..+++|||++|.+++++|.. |+.++|
T Consensus 355 ~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~----p~r~vv 429 (542)
T PRK05858 355 RDPIHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRY-IDPYRPGCWLDPGPFGCLGTGPGYALAARLAR----PSRQVV 429 (542)
T ss_pred CCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHH-ccccCCCCEEeCCCccccccchhHHHHHHHhC----CCCcEE
Confidence 46899999999999999999999999 7777788777 78888899999988899999999999999985 889999
Q ss_pred EEEcCCCccccchhhhHHhhhccCchhHHH-----HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhh
Q psy12573 85 CVQGDSAFGFSGMELETLAVDKEGRPKLDE-----IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT 159 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~ 159 (315)
+++|||++.++.+||.++.+... |-... .+........... ..+. +..+-...|+..+++
T Consensus 430 ~i~GDG~f~~~~~eL~Ta~~~~l--pi~ivV~NN~~y~~~~~~~~~~~--~~~~-----------~~~~~~~~d~~~lA~ 494 (542)
T PRK05858 430 LLQGDGAFGFSLMDVDTLVRHNL--PVVSVIGNNGIWGLEKHPMEALY--GYDV-----------AADLRPGTRYDEVVR 494 (542)
T ss_pred EEEcCchhcCcHHHHHHHHHcCC--CEEEEEEeCCchhhHHHHHHHhc--CCcc-----------ccccCCCCCHHHHHH
Confidence 99999999999999999876221 11000 0000010000000 1000 011223478887777
Q ss_pred hcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 160 ASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 160 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
. |+....+ ....++...+......++|++..+
T Consensus 495 a--~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev 527 (542)
T PRK05858 495 A--LGGHGELVTVPAELGPALERAFASGVPYLVNV 527 (542)
T ss_pred H--CCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 6 6666555 566667677766666778876544
No 132
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.32 E-value=1.9e-11 Score=117.47 Aligned_cols=169 Identities=19% Similarity=0.206 Sum_probs=116.6
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
..+++|+++++.|++.+++|.+++.| |++..|..++ +..+++..++++..+++|||++|.++++++.. ++.+||
T Consensus 372 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaAiGaala~----p~~~vv 446 (571)
T PRK07710 372 SESIKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQY-YPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAK----PDETVV 446 (571)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-cccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEE
Confidence 45899999999999999999999999 7777888887 88888899999999999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhhhccCchh--H-HHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhc
Q psy12573 85 CVQGDSAFGFSGMELETLAVDKEGRPK--L-DEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS 161 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~ 161 (315)
+|+|||+++++.++|.++.+...+.-- . ++.+..++...... ..... .+..+....|+..+++.
T Consensus 447 ~i~GDGsf~m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~--~~~~~----------~~~~~~~~~d~~~~A~a- 513 (571)
T PRK07710 447 AIVGDGGFQMTLQELSVIKELSLPVKVVILNNEALGMVRQWQEEF--YNQRY----------SHSLLSCQPDFVKLAEA- 513 (571)
T ss_pred EEEcchHHhhhHHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHH--hCCcc----------eeccCCCCCCHHHHHHH-
Confidence 999999999999999988752211000 0 00000011000000 00100 01123334688877776
Q ss_pred CCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 162 KFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
|+....+ ....++...+......++|++..|
T Consensus 514 -~G~~~~~v~~~~el~~al~~a~~~~~p~lieV 545 (571)
T PRK07710 514 -YGIKGVRIDDELEAKEQLQHAIELQEPVVIDC 545 (571)
T ss_pred -CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 5655555 555666666666667778876544
No 133
>PRK08611 pyruvate oxidase; Provisional
Probab=99.32 E-value=2e-11 Score=117.38 Aligned_cols=164 Identities=20% Similarity=0.216 Sum_probs=115.7
Q ss_pred CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573 5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83 (315)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v 83 (315)
.+.+++|..+++.|++.+|++.+++.| |++..|..+. +..+.+..++.+..+++||+++|.+++.++.. |+.+|
T Consensus 355 ~~~~i~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~V 429 (576)
T PRK08611 355 ASTPIKPERVMAAIQKIADDDAVLSVDVGTVTVWSARY-LNLGTNQKFIISSWLGTMGCGLPGAIAAKIAF----PDRQA 429 (576)
T ss_pred CCCCcCHHHHHHHHhhhcCCCeEEEEcChHHHHHHHhc-CCcCCCCeEEeCCCchhhhhhHHHHHHHHHhC----CCCcE
Confidence 346899999999999999999999999 7778888887 88888889998888999999999999999975 78899
Q ss_pred EEEEcCCCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhh
Q psy12573 84 VCVQGDSAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAI 156 (315)
Q Consensus 84 vvl~g~g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~ 156 (315)
|+|+|||++++++++|.+..+..-+ +..+ ..+.... .... .+. .+..+ ...|+..
T Consensus 430 v~i~GDGsf~m~~~eL~Ta~r~~l~~iivV~NN~~~-g~i~~~q----~~~~--~~~----------~~~~~-~~~d~~~ 491 (576)
T PRK08611 430 IAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNNQQL-AFIKYEQ----QAAG--ELE----------YAIDL-SDMDYAK 491 (576)
T ss_pred EEEEcccHHhhhHHHHHHHHHhCCCeEEEEEeCCcc-hHHHHHH----HHhc--CCc----------ccccC-CCCCHHH
Confidence 9999999999999999987652211 0000 0000000 0000 000 01111 2368887
Q ss_pred hhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 157 ATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 157 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
+++. |+....+ ....++...+......++|++..|
T Consensus 492 lA~a--~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV 527 (576)
T PRK08611 492 FAEA--CGGKGYRVEKAEELDPAFEEALAQDKPVIIDV 527 (576)
T ss_pred HHHH--CCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 7776 5665555 556666666666666777775444
No 134
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.32 E-value=2.1e-11 Score=99.13 Aligned_cols=88 Identities=18% Similarity=0.065 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhcc-CCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy12573 11 YYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLN-NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 88 (315)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~-~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g 88 (315)
...+++.|++.+|+|.+++.| |.+..|..++ ++. ++|+.++++..+++||+++|.+++.++.. +.+||+|+|
T Consensus 3 ~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-----~~~Vv~i~G 76 (175)
T cd02009 3 EPALARALPDHLPEGSQLFVGNSMPIRDLDLF-ALPSDKTVRVFANRGASGIDGTLSTALGIALAT-----DKPTVLLTG 76 (175)
T ss_pred hHHHHHHHHHhCCCCCeEEEECCHHHHHHHHc-cCccCCCceEEecCCccchhhHHHHHHHHHhcC-----CCCEEEEEe
Confidence 456899999999999999999 8888888877 776 88889998888899999999999999974 568999999
Q ss_pred CCCccccchhhhHHhh
Q psy12573 89 DSAFGFSGMELETLAV 104 (315)
Q Consensus 89 ~g~~~~aG~Dl~~~~~ 104 (315)
||+++++.++|.+..+
T Consensus 77 DGsf~m~~~eL~ta~~ 92 (175)
T cd02009 77 DLSFLHDLNGLLLGKQ 92 (175)
T ss_pred hHHHHHhHHHHHhccc
Confidence 9999999999988764
No 135
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.31 E-value=2.8e-11 Score=117.29 Aligned_cols=165 Identities=22% Similarity=0.254 Sum_probs=113.7
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.+|+|+++++.|++.++ |.+++.| |++..|..++ +. ..|..++++..+++||+++|.++++++.. |+.+||
T Consensus 384 ~~~l~~~~v~~~l~~~~~-d~i~~~D~G~~~~~~~~~-~~-~~p~~~~~s~~~g~mG~glpaAiGA~lA~----p~r~Vv 456 (616)
T PRK07418 384 EGEIYPQEVLLAVRDLAP-DAYYTTDVGQHQMWAAQF-LR-NGPRRWISSAGLGTMGFGMPAAMGVKVAL----PDEEVI 456 (616)
T ss_pred CCCcCHHHHHHHHHhhCC-CcEEEECChHHHHHHHHh-hh-cCCCeEEcCCCccccccHHHHHHHHHHhC----CCCcEE
Confidence 468999999999999987 6888889 8888999887 65 45777999989999999999999999985 888999
Q ss_pred EEEcCCCccccchhhhHHhhhccCchhHHHH-----HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhc-cccChhhhh
Q psy12573 85 CVQGDSAFGFSGMELETLAVDKEGRPKLDEI-----FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV-ATCDLAIAT 158 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~-~g~D~~~~~ 158 (315)
+|+|||++.|+++||.+..+... |-.... +..+... .... ...... +..+. ...|+..++
T Consensus 457 ~i~GDG~f~m~~~eL~Ta~r~~l--pvi~vV~NN~~~g~i~~~-q~~~-~~~~~~----------~~~~~~~~~d~~~~A 522 (616)
T PRK07418 457 CIAGDASFLMNIQELGTLAQYGI--NVKTVIINNGWQGMVRQW-QESF-YGERYS----------ASNMEPGMPDFVKLA 522 (616)
T ss_pred EEEcchHhhhhHHHHHHHHHhCC--CeEEEEEECCcchHHHHH-HHHh-cCCCce----------eecCCCCCCCHHHHH
Confidence 99999999999999999876221 110000 0000100 0000 111100 11121 236888777
Q ss_pred hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 159 TASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 159 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
+. |+....+ ....++...+......++|++..|
T Consensus 523 ~a--~G~~g~~V~~~~el~~al~~a~~~~~p~lIeV 556 (616)
T PRK07418 523 EA--FGVKGMVISERDQLKDAIAEALAHDGPVLIDV 556 (616)
T ss_pred HH--CCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 77 5666655 556666667766666777876544
No 136
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.31 E-value=3.8e-11 Score=115.34 Aligned_cols=94 Identities=37% Similarity=0.568 Sum_probs=85.2
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.|+++.++++.|++.+|+|.+++.| |++..|..+. +..+.+.+++++..+++||+++|.+++.++.. ++.+||
T Consensus 367 ~~~l~~~~v~~~l~~~l~~~~iv~~D~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~----~~~~vv 441 (564)
T PRK08155 367 DDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQA-YPLNRPRQWLTSGGLGTMGFGLPAAIGAALAN----PERKVL 441 (564)
T ss_pred CCCcCHHHHHHHHHHhCCCCeEEEECCchHHHHHHHh-ccccCCCeEEeCCCcccccchhHHHHHHHHhC----CCCcEE
Confidence 45899999999999999999999999 7778888777 88888999999999999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+++|||++++++++|.+..+
T Consensus 442 ~i~GDGsf~~~~~eL~ta~~ 461 (564)
T PRK08155 442 CFSGDGSLMMNIQEMATAAE 461 (564)
T ss_pred EEEccchhhccHHHHHHHHH
Confidence 99999999999999988764
No 137
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.30 E-value=2.3e-11 Score=117.80 Aligned_cols=94 Identities=28% Similarity=0.355 Sum_probs=86.0
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.++++.++++.|++.+++|.+++.| |++..|..++ ++.+.+..++++..+++|||++|.++++++.. |+.+||
T Consensus 395 ~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~----p~~~Vv 469 (612)
T PRK07789 395 DGSLAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQF-IDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGR----PDKEVW 469 (612)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-cccCCCCeEEcCCCcccccchhhhHHhhhccC----CCCcEE
Confidence 45799999999999999999999999 7777888887 88888889999999999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++++++++|.++.+
T Consensus 470 ~i~GDG~f~m~~~eL~Ta~~ 489 (612)
T PRK07789 470 AIDGDGCFQMTNQELATCAI 489 (612)
T ss_pred EEEcchhhhccHHHHHHHHH
Confidence 99999999999999999876
No 138
>PLN02573 pyruvate decarboxylase
Probab=99.30 E-value=2.7e-11 Score=116.39 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=81.8
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.|++|+++++.|++.+++|.|++.| |++ ++..+. +..|.+..++.+..+++|||++|.+|++++.. ++.+||
T Consensus 377 ~~~i~~~~~~~~l~~~l~~d~iiv~D~G~~-~~~~~~-~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~----p~r~vv 450 (578)
T PLN02573 377 GEPLRVNVLFKHIQKMLSGDTAVIAETGDS-WFNCQK-LKLPEGCGYEFQMQYGSIGWSVGATLGYAQAA----PDKRVI 450 (578)
T ss_pred CCccCHHHHHHHHHHhcCCCCEEEEecccc-hhhHHh-ccCCCCCeEEeecchhhhhhhhhHHHHHHHhC----CCCceE
Confidence 45799999999999999999999999 554 443344 77888888888888999999999999999985 888999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++.|++++|.++.+
T Consensus 451 ~i~GDG~f~m~~~EL~Ta~r 470 (578)
T PLN02573 451 ACIGDGSFQVTAQDVSTMIR 470 (578)
T ss_pred EEEeccHHHhHHHHHHHHHH
Confidence 99999999999999999876
No 139
>PRK08617 acetolactate synthase; Reviewed
Probab=99.30 E-value=2.5e-11 Score=116.36 Aligned_cols=166 Identities=27% Similarity=0.354 Sum_probs=116.3
Q ss_pred CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573 5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83 (315)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v 83 (315)
.+.++++.++++.|++.+++|.+++.| |++..|..++ +...+|++++.+..+++|||++|.++++++.. ++.+|
T Consensus 361 ~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~----p~~~v 435 (552)
T PRK08617 361 EEGAVHPLRIIRALQDIVTDDTTVTVDVGSHYIWMARY-FRSYEPRHLLFSNGMQTLGVALPWAIAAALVR----PGKKV 435 (552)
T ss_pred CCCCcCHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHh-ccccCCCeEEecCccccccccccHHHhhHhhc----CCCcE
Confidence 346799999999999999999999999 8888888887 77788888888888899999999999999985 78899
Q ss_pred EEEEcCCCccccchhhhHHhhhccCchhH-----HHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh
Q psy12573 84 VCVQGDSAFGFSGMELETLAVDKEGRPKL-----DEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT 158 (315)
Q Consensus 84 vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~ 158 (315)
|+|+|||++.|++++|.+..+...+ -. +..+..++.. ... ... +. .+..+ ...|+..++
T Consensus 436 v~i~GDGsf~m~~~eL~Ta~~~~lp--v~~vV~NN~~~~~~~~~-~~~-~~~-~~----------~~~~~-~~~d~~~lA 499 (552)
T PRK08617 436 VSVSGDGGFLFSAMELETAVRLKLN--IVHIIWNDGHYNMVEFQ-EEM-KYG-RS----------SGVDF-GPVDFVKYA 499 (552)
T ss_pred EEEEechHHhhhHHHHHHHHHhCCC--eEEEEEECCccchHHHH-HHh-hcC-Cc----------ccCCC-CCCCHHHHH
Confidence 9999999999999999987652211 00 0000000000 000 000 00 01112 236777777
Q ss_pred hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 159 TASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 159 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
+. |+.+..+ ....++...+......++|++..|
T Consensus 500 ~a--~G~~~~~v~~~~eL~~al~~a~~~~~p~liev 533 (552)
T PRK08617 500 ES--FGAKGLRVTSPDELEPVLREALATDGPVVIDI 533 (552)
T ss_pred HH--CCCeEEEECCHHHHHHHHHHHHhCCCcEEEEE
Confidence 76 5666655 556667777766667778876554
No 140
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.29 E-value=3.8e-11 Score=115.25 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=115.6
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
..+++|..+++.|++.+| |.+++.| |++..|..++ +..+.+..++++..+++|||++|.+++.++.. ++.+||
T Consensus 363 ~~~l~~~~~~~~l~~~~p-~~iiv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~Vv 436 (561)
T PRK06048 363 EDVIKPQYVIEQIYELCP-DAIIVTEVGQHQMWAAQY-FKYKYPRTFITSGGLGTMGYGFPAAIGAKVGK----PDKTVI 436 (561)
T ss_pred CCCcCHHHHHHHHHhhCC-CcEEEEcCcHHHHHHHHh-cccCCCCeEEeCCCccccccHHHHHHHHHHhC----CCCcEE
Confidence 468999999999999987 7888899 7777888777 88888899999999999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhhhccCchhHH-----HHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhh
Q psy12573 85 CVQGDSAFGFSGMELETLAVDKEGRPKLD-----EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT 159 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~ 159 (315)
+++|||+++++++||.++.+...+ -.- ..+..+.... ... ...+. .+..+....|+..+++
T Consensus 437 ~i~GDG~f~m~~~eL~Ta~~~~l~--i~~vV~NN~~y~~i~~~~-~~~-~~~~~----------~~~~~~~~~d~~~lA~ 502 (561)
T PRK06048 437 DIAGDGSFQMNSQELATAVQNDIP--VIVAILNNGYLGMVRQWQ-ELF-YDKRY----------SHTCIKGSVDFVKLAE 502 (561)
T ss_pred EEEeCchhhccHHHHHHHHHcCCC--eEEEEEECCccHHHHHHH-HHH-cCCcc----------cccCCCCCCCHHHHHH
Confidence 999999999999999998763211 000 0000011000 000 00100 0112223468887777
Q ss_pred hcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573 160 ASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS 194 (315)
Q Consensus 160 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~ 194 (315)
. |+.+..+ ....++...+......++|.+..|.
T Consensus 503 a--~G~~~~~v~t~~el~~al~~a~~~~~p~liev~ 536 (561)
T PRK06048 503 A--YGALGLRVEKPSEVRPAIEEAVASDRPVVIDFI 536 (561)
T ss_pred H--CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 7 5655555 5556666666666677788765443
No 141
>PRK06163 hypothetical protein; Provisional
Probab=99.29 E-value=7.5e-11 Score=97.51 Aligned_cols=87 Identities=23% Similarity=0.376 Sum_probs=72.4
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CC--hhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GA--NTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 82 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~--~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~ 82 (315)
.-+++++++++.+++.+++|++++.| |+ +..|..+ ..+.+++ .+++||+++|.+++.+++. |+.+
T Consensus 10 ~~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~-----~~~~~~~---~~GsMG~glpaAiGaalA~----p~r~ 77 (202)
T PRK06163 10 AKVMNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAG-----QRPQNFY---MLGSMGLAFPIALGVALAQ----PKRR 77 (202)
T ss_pred CCCcCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhh-----cCCCCeE---eecccccHHHHHHHHHHhC----CCCe
Confidence 35799999999999999999999999 65 3455543 3455565 3799999999999999985 8889
Q ss_pred EEEEEcCCCccccchhhhHHhh
Q psy12573 83 VVCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 83 vvvl~g~g~~~~aG~Dl~~~~~ 104 (315)
||+|+|||++++..++|.++.+
T Consensus 78 Vv~i~GDG~f~m~~~eL~Ta~~ 99 (202)
T PRK06163 78 VIALEGDGSLLMQLGALGTIAA 99 (202)
T ss_pred EEEEEcchHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 142
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.29 E-value=4.9e-11 Score=114.38 Aligned_cols=169 Identities=35% Similarity=0.485 Sum_probs=109.4
Q ss_pred CCCCCHHHHHHHHHhhCCC--CceEEeCCCh-hhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573 6 SVPLNYYAAIHAVQVSIPD--NCIIVGEGAN-TMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 82 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~-~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~ 82 (315)
+.|+++.++++.|++.+++ |.+++.||++ ..|..++ +..+.|+.++++..+++|||++|.+++++++ ++.+
T Consensus 363 ~~~l~~~~~~~~l~~~l~~~~~~ivv~d~~~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-----~~~~ 436 (554)
T TIGR03254 363 ESPMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNV-IDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-----TGKP 436 (554)
T ss_pred CCCcCHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHh-cccCCCCcEeeCCCCCcCCchHHHHHHHHhc-----CCCc
Confidence 4689999999999999974 6777778554 4455444 7778888899999999999999999999996 3578
Q ss_pred EEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcC
Q psy12573 83 VVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK 162 (315)
Q Consensus 83 vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~ 162 (315)
||+|+|||++.|++++|.++.+..- +-. +..+||.-. ....+.. ..+. .-.+..|....|+..+++.
T Consensus 437 vv~i~GDGsf~m~~~EL~Ta~r~~l--~v~---~vV~NN~~~--~~~~~~~---~~~~-~~~~~~~~~~~df~~la~a-- 503 (554)
T TIGR03254 437 VVALEGDSAFGFSGMEVETICRYNL--PVC---VVIFNNGGI--YRGDDVN---VVGA-DPAPTVLVHGARYDKMMKA-- 503 (554)
T ss_pred EEEEEcCchhcccHHHHHHHHHcCC--CEE---EEEEeChhh--hhhhhhh---hcCC-CCCccccCCCCCHHHHHHH--
Confidence 9999999999999999999876221 110 000111000 0000000 0000 0011233345788877776
Q ss_pred CCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 163 FSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 163 ~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
|+....+ ....++...+......++|++..|
T Consensus 504 ~G~~~~~v~~~~el~~al~~a~~~~~p~lIev 535 (554)
T TIGR03254 504 FGGVGYNVTTPDELKAALNEALASGKPTLINA 535 (554)
T ss_pred CCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 5665555 556666666666556677775443
No 143
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.29 E-value=2.8e-11 Score=116.75 Aligned_cols=94 Identities=24% Similarity=0.330 Sum_probs=85.0
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.+++|+.+++.|++.+++|.+++.| |.+..|..++ +..++++.++++..+++|||++|.++++++.. |+.+||
T Consensus 367 ~~~l~~~~~~~~l~~~l~~d~ivv~d~g~~~~~~~~~-~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~----p~r~Vv 441 (591)
T PRK11269 367 NVPIKPQRVYEEMNKAFGRDTCYVSTIGLSQIAAAQF-LHVYKPRHWINCGQAGPLGWTIPAALGVRAAD----PDRNVV 441 (591)
T ss_pred CCCcCHHHHHHHHHHhcCCCcEEEECCcHHHHHHHHh-cccCCCCcEEeCCccccccchhhhHHhhhhhC----CCCcEE
Confidence 45799999999999999999999999 7777788777 77888889999888999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+++|||++.+++++|.+..+
T Consensus 442 ~i~GDG~f~m~~~eL~Ta~~ 461 (591)
T PRK11269 442 ALSGDYDFQFLIEELAVGAQ 461 (591)
T ss_pred EEEccchhhcCHHHHHHHHH
Confidence 99999999999999999876
No 144
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.28 E-value=6.1e-11 Score=114.03 Aligned_cols=94 Identities=21% Similarity=0.281 Sum_probs=84.4
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
..|++|..+++.|++.+++|.+++.| |.+..|..++ +..+++++++++..+++|||++|.+++.++.. ++.+||
T Consensus 356 ~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~----p~~~vv 430 (578)
T PRK06546 356 HTPIHPEYVASILDELAADDAVFTVDTGMCNVWAARY-ITPNGRRRVIGSFRHGSMANALPHAIGAQLAD----PGRQVI 430 (578)
T ss_pred CCCcCHHHHHHHHHHhccCCcEEEECCcHHHHHHHHh-cCCCCCceEEccCCcccccchhHHHHHHHHhC----CCCcEE
Confidence 35899999999999999999999999 7788888887 77777889998888999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++.++++++.+..+
T Consensus 431 ~i~GDGsf~~~~~el~Ta~~ 450 (578)
T PRK06546 431 SMSGDGGLSMLLGELLTVKL 450 (578)
T ss_pred EEEcCchHhhhHHHHHHHHH
Confidence 99999999999999988765
No 145
>PRK08322 acetolactate synthase; Reviewed
Probab=99.27 E-value=6.7e-11 Score=113.36 Aligned_cols=164 Identities=21% Similarity=0.245 Sum_probs=115.3
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.|+++.++++.|++.+++|.+++.| |.+..|..++ +..+++..++++..+++|||++|.+++.++.. |+.++|
T Consensus 354 ~~~l~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~----p~~~vv 428 (547)
T PRK08322 354 RFPMKPQRIVADLRKVMPDDDIVILDNGAYKIWFARN-YRAYEPNTCLLDNALATMGAGLPSAIAAKLVH----PDRKVL 428 (547)
T ss_pred CCCcCHHHHHHHHHHHCCCCeEEEECCcHHHHHHHHh-cccCCCCCEEcCCCcccccchhHHHHHHHHhC----CCCcEE
Confidence 34799999999999999999999999 8888899887 77888889998888999999999999999985 888999
Q ss_pred EEEcCCCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhh
Q psy12573 85 CVQGDSAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA 157 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~ 157 (315)
+++|||++++++++|.+..+...+ +..+ .. ++... .... ... . +..+ ...|+..+
T Consensus 429 ~i~GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN~~~-g~---~~~~~-~~~~-~~~-~----------~~~~-~~~df~~l 490 (547)
T PRK08322 429 AVCGDGGFMMNSQELETAVRLGLPLVVLILNDNAY-GM---IRWKQ-ENMG-FED-F----------GLDF-GNPDFVKY 490 (547)
T ss_pred EEEcchhHhccHHHHHHHHHhCCCeEEEEEeCCCc-ch---HHHHH-Hhhc-CCc-c----------cccC-CCCCHHHH
Confidence 999999999999999987652211 1100 00 00000 0000 000 0 0111 23578777
Q ss_pred hhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573 158 TTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS 194 (315)
Q Consensus 158 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~ 194 (315)
++. |+....+ ....++...+......++|.+..|.
T Consensus 491 A~a--~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~ 526 (547)
T PRK08322 491 AES--YGAKGYRVESADDLLPTLEEALAQPGVHVIDCP 526 (547)
T ss_pred HHH--CCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 776 5555555 5556666666666666777765543
No 146
>KOG4166|consensus
Probab=99.27 E-value=5.8e-11 Score=104.54 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=117.4
Q ss_pred CCCCCCHHHHHHHHHhhCCC---CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCC
Q psy12573 5 ESVPLNYYAAIHAVQVSIPD---NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPG 80 (315)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~ 80 (315)
...-|+||.+++.|++..++ ..||++. |.|++|.++. ++..+|+.+++++++|+||+++|+++++.++. |+
T Consensus 468 pGe~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqf-y~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~----P~ 542 (675)
T KOG4166|consen 468 PGEAIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQF-YNWKKPRQWLTSGGLGTMGFGLPAAIGASVAN----PD 542 (675)
T ss_pred CccccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHH-hcccCccceeecCCccccccCcchhhcccccC----cc
Confidence 34569999999999998765 4566666 9999999998 99999999999999999999999999999985 88
Q ss_pred CeEEEEEcCCCccccchhhhHHhhhcc-------CchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccC
Q psy12573 81 KRVVCVQGDSAFGFSGMELETLAVDKE-------GRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCD 153 (315)
Q Consensus 81 ~~vvvl~g~g~~~~aG~Dl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D 153 (315)
--||=|.||+.|.+.+.+|.+...... |+. -.....+.+++++.-..... . -.-.|
T Consensus 543 ~iViDIDGDaSF~Mt~~ELat~rq~~~PVKiLiLNNe-eqGMVtQWq~lFYe~rysHT---h-------------Q~nPn 605 (675)
T KOG4166|consen 543 AIVIDIDGDASFIMTVQELATIRQENLPVKILILNNE-EQGMVTQWQDLFYEARYSHT---H-------------QENPN 605 (675)
T ss_pred cEEEeccCCceeeeehHhhhhhhhcCCceEEEEecch-hhhhHHHHHHHHHHhhhccc---c-------------ccCcc
Confidence 778888999998889999999876321 122 12233344555544332111 0 00145
Q ss_pred hhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573 154 LAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAI 192 (315)
Q Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~ 192 (315)
+..+++. ++.+..+ .--.++...+..+...+.|++-.
T Consensus 606 f~klA~A--mGikalRV~K~edL~~k~keflsTkGPvLle 643 (675)
T KOG4166|consen 606 FLKLAAA--MGIKALRVTKKEDLREKIKEFLSTKGPVLLE 643 (675)
T ss_pred HHHHHHh--cCCchheeehHHHHHHHHHHHhCCCCCeEEE
Confidence 5555554 4555555 45556666666777788887543
No 147
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.26 E-value=5.9e-11 Score=113.95 Aligned_cols=94 Identities=27% Similarity=0.406 Sum_probs=84.9
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.++++..+++.|++.+|+|.+++.| |.+..|..++ +..+.|..++++..+++|||++|.+++.++.. ++.+||
T Consensus 360 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~----~~~~vv 434 (558)
T TIGR00118 360 EEGIKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQF-YPFRKPRRFITSGGLGTMGFGLPAAIGAKVAK----PESTVI 434 (558)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHh-cccCCCCeEEeCCccccccchhhHHHhhhhhC----CCCcEE
Confidence 45799999999999999999999999 7777788777 88888999999999999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+++|||+++++.++|.++.+
T Consensus 435 ~~~GDG~f~~~~~eL~ta~~ 454 (558)
T TIGR00118 435 CITGDGSFQMNLQELSTAVQ 454 (558)
T ss_pred EEEcchHHhccHHHHHHHHH
Confidence 99999999999999988765
No 148
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.25 E-value=6.5e-11 Score=114.16 Aligned_cols=94 Identities=29% Similarity=0.472 Sum_probs=85.1
Q ss_pred CCCCCHHHHHHHHHhhCCC-----CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCC
Q psy12573 6 SVPLNYYAAIHAVQVSIPD-----NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAP 79 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~ 79 (315)
+.++++..+++.|++.+++ |.+++.| |.+..|..+. ++.+.|..++++..+++|||++|.+++.++.. +
T Consensus 362 ~~~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~----p 436 (586)
T PRK06276 362 DKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQNQMWMAHF-FKTSAPRSFISSGGLGTMGFGFPAAIGAKVAK----P 436 (586)
T ss_pred CCCcCHHHHHHHHHHhccccCCCCCeEEEeCCcHHHHHHHHh-cccCCCCeEEcCCCccccccchhHHHhhhhhc----C
Confidence 4579999999999999998 9999999 7777888776 88888999999999999999999999999985 7
Q ss_pred CCeEEEEEcCCCccccchhhhHHhh
Q psy12573 80 GKRVVCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 80 ~~~vvvl~g~g~~~~aG~Dl~~~~~ 104 (315)
+.+||+++|||++++++++|.++.+
T Consensus 437 ~~~Vv~i~GDGsf~m~~~eL~Ta~~ 461 (586)
T PRK06276 437 DANVIAITGDGGFLMNSQELATIAE 461 (586)
T ss_pred CCcEEEEEcchHhhccHHHHHHHHH
Confidence 7899999999999999999998876
No 149
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.24 E-value=4.8e-11 Score=99.89 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=67.2
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG 145 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G 145 (315)
.++.++|.++..|+++++|+|+ .||.|+|+..+..
T Consensus 24 ~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~----------------------------------------- 58 (211)
T cd07019 24 DTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV----------------------------------------- 58 (211)
T ss_pred HHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-----------------------------------------
Confidence 8899999999999999999997 5678888654310
Q ss_pred chhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeC
Q psy12573 146 CQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST 221 (315)
Q Consensus 146 ~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~ 221 (315)
+...+..++.++||+|+.++|.+.++|+.|+++||.+++++.+.++.
T Consensus 59 -----------------------------~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs 105 (211)
T cd07019 59 -----------------------------IRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS 105 (211)
T ss_pred -----------------------------HHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE
Confidence 01233456778999999999999999999999999999999988753
No 150
>KOG1684|consensus
Probab=99.23 E-value=6.4e-12 Score=108.25 Aligned_cols=186 Identities=18% Similarity=0.198 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcE
Q psy12573 111 KLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPI 189 (315)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpv 189 (315)
..+.+|...+.+...+..+.||.|++++|+++|+|.+++...-+|++.+.+.|.+||.. |++|+.+..+ .+.++|
T Consensus 116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy-~lsrlp--- 191 (401)
T KOG1684|consen 116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASY-FLSRLP--- 191 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCcccee-ehhhCc---
Confidence 45678888889999999999999999999999999999999999999999999999999 9999999876 445555
Q ss_pred EEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHH---HhhhcC-------HHHHHHHHhc-CCC--
Q psy12573 190 LAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVA---LTRKVP-------LGVVRSMTIT-GIP-- 255 (315)
Q Consensus 190 Ia~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~---l~~~~g-------~~~a~~~~~~-g~~-- 255 (315)
| - .|.+|.+++..+.++|. ...||..+- .+.. +..+++ .+...+.+.. ...
T Consensus 192 -----g-~--lg~YLgLTG~rl~GaD~-------~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~ 256 (401)
T KOG1684|consen 192 -----G-Y--LGLYLGLTGQRLSGADA-------LRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAK 256 (401)
T ss_pred -----c-H--HHHhhhhccceecchHH-------HHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCC
Confidence 4 2 35999999999999888 777877543 2222 222222 1222222221 111
Q ss_pred -CCHHHHHHcCccccccCCc---------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573 256 -ISAQDAYNAGLITRVVSSN---------------EELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315 (315)
Q Consensus 256 -~~a~~a~~~Glv~~v~~~~---------------~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l 315 (315)
-+-.....+.+++.++..+ .+..+++.+..+.|.+.+|.+++.+.+.++++...+|+++|
T Consensus 257 ~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l 332 (401)
T KOG1684|consen 257 DESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCL 332 (401)
T ss_pred CccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHH
Confidence 0111112334445544331 23345677778889999999999999999999988998875
No 151
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.23 E-value=1.3e-10 Score=111.87 Aligned_cols=93 Identities=25% Similarity=0.359 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
.+++|..+++.|++.+++|.+++.| |.+..|..++ +..+.++.++++..+++||+++|.+++.++.. ++.+||+
T Consensus 370 ~~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~----p~~~vv~ 444 (574)
T PRK06882 370 DVIKPQQVVEAIYRLTNGDAYVASDVGQHQMFAALH-YPFDKPRRWINSGGAGTMGFGLPAAIGVKFAH----PEATVVC 444 (574)
T ss_pred CCcCHHHHHHHHHhhcCCCeEEEecCchhHHHHHHh-ccccCCCcEEeCCCcccccchhHHHHHHHhhc----CCCcEEE
Confidence 4799999999999999999999999 7777888877 88888899999999999999999999999985 7789999
Q ss_pred EEcCCCccccchhhhHHhh
Q psy12573 86 VQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 86 l~g~g~~~~aG~Dl~~~~~ 104 (315)
|+|||++++++.+|.+..+
T Consensus 445 i~GDG~f~~~~~eL~ta~~ 463 (574)
T PRK06882 445 VTGDGSIQMNIQELSTAKQ 463 (574)
T ss_pred EEcchhhhccHHHHHHHHH
Confidence 9999999999999998865
No 152
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.23 E-value=1.3e-10 Score=111.77 Aligned_cols=167 Identities=37% Similarity=0.551 Sum_probs=108.2
Q ss_pred CCCCCHHHHHHHHHhhCC--CCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573 6 SVPLNYYAAIHAVQVSIP--DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v 83 (315)
+.|+++..+++.|++.++ +|.+++.||++..+.+...+....|++.+++..+++|||++|.+++++++ ++.+|
T Consensus 370 ~~~l~~~~~~~~l~~~l~~~~d~iv~~~~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-----~~~~v 444 (569)
T PRK09259 370 TQPMNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-----TGKPV 444 (569)
T ss_pred CCCcCHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-----CCCcE
Confidence 468999999999999994 47888778655444444336677778888888899999999999999997 36689
Q ss_pred EEEEcCCCccccchhhhHHhhhccCchhHHHHHHH--HHHHHHHHHcC-CCcEEEEEeeEEecccchhccccChhhhhhh
Q psy12573 84 VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFST--CSDLMLSILRH-PVPILAIISGVAAAAGCQLVATCDLAIATTA 160 (315)
Q Consensus 84 vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~ 160 (315)
|+|+|||+++|++++|.++.+... |-.-..+|+ +.......... ..+ .+..+....|+..+++.
T Consensus 445 v~i~GDG~f~m~~~EL~Ta~r~~l--pi~~vV~NN~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~~~lA~a 511 (569)
T PRK09259 445 VAIEGDSAFGFSGMEVETICRYNL--PVTVVIFNNGGIYRGDDVNLSGAGDP-----------SPTVLVHHARYDKMMEA 511 (569)
T ss_pred EEEecCccccccHHHHHHHHHcCC--CEEEEEEeChhHHHHHHHHhhcCCCc-----------cccccCCCCCHHHHHHH
Confidence 999999999999999999876321 110000000 00000000000 010 11223345788877776
Q ss_pred cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573 161 SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAI 192 (315)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~ 192 (315)
|+....+ ....++...+......++|++-.
T Consensus 512 --~G~~~~~v~~~~el~~al~~a~~~~~p~lIe 542 (569)
T PRK09259 512 --FGGVGYNVTTPDELRHALTEAIASGKPTLIN 542 (569)
T ss_pred --CCCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 5555555 55556666666655667777543
No 153
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.20 E-value=2.2e-10 Score=110.42 Aligned_cols=94 Identities=22% Similarity=0.364 Sum_probs=81.3
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCc-ccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPR-HRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~-n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v 83 (315)
+.+++|+++++.|++.++++.+++.| |.+..|..++ +...++. +++++..+++||+++|.+++.+++. ++.+|
T Consensus 384 ~~~i~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~----~~~~v 458 (578)
T PRK06112 384 ASPIRPERIMAELQAVLTGDTIVVADASYSSIWVANF-LTARRAGMRFLTPRGLAGLGWGVPMAIGAKVAR----PGAPV 458 (578)
T ss_pred CCCcCHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHh-cCccCCCceEECCCCccccccHHHHHHHHHhhC----CCCcE
Confidence 45799999999999999999999999 7777888776 6554544 7888888999999999999999874 78899
Q ss_pred EEEEcCCCccccchhhhHHhh
Q psy12573 84 VCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 84 vvl~g~g~~~~aG~Dl~~~~~ 104 (315)
|+++|||++++.+.++.+..+
T Consensus 459 v~i~GDGsf~~~~~el~ta~~ 479 (578)
T PRK06112 459 ICLVGDGGFAHVWAELETARR 479 (578)
T ss_pred EEEEcchHHHhHHHHHHHHHH
Confidence 999999999888999888765
No 154
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.20 E-value=2e-10 Score=110.73 Aligned_cols=92 Identities=30% Similarity=0.476 Sum_probs=81.3
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.||++.++++.|++.+| |.+++.| |.+..|..++ +.. .+..++++..+++|||++|.++++++.. ++.+||
T Consensus 380 ~~~l~~~~~~~~l~~~~~-d~iv~~d~G~~~~~~~~~-~~~-~~~~~~~~~~~g~mG~glpaaiGaala~----p~~~vv 452 (585)
T CHL00099 380 STSLSPQEVINEISQLAP-DAYFTTDVGQHQMWAAQF-LKC-KPRKWLSSAGLGTMGYGLPAAIGAQIAH----PNELVI 452 (585)
T ss_pred CCCcCHHHHHHHHHhhCC-CeEEEECCcHHHHHHHHh-ccC-CCCcEEcCccccchhhhHHHHHHHHHhC----CCCeEE
Confidence 468999999999999998 8999999 7767888887 543 5678898889999999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++++++++|.++.+
T Consensus 453 ~i~GDG~f~m~~~eL~Ta~~ 472 (585)
T CHL00099 453 CISGDASFQMNLQELGTIAQ 472 (585)
T ss_pred EEEcchhhhhhHHHHHHHHH
Confidence 99999999999999999875
No 155
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.18 E-value=3.3e-10 Score=90.87 Aligned_cols=91 Identities=16% Similarity=0.268 Sum_probs=69.4
Q ss_pred HHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc--h------HH------HHh------h
Q psy12573 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST--P------AV------ALT------R 239 (315)
Q Consensus 180 ~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~--~------~~------~l~------~ 239 (315)
..+..++||+++.++|.+.++|..|+++||.+++.+.++|++.....+..... . .. .+. +
T Consensus 51 ~~l~~~~kpvva~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r 130 (161)
T cd00394 51 DALQASRKPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENR 130 (161)
T ss_pred HHHHHhCCCEEEEECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566779999999999999999999999999999999999988765544211 0 00 111 1
Q ss_pred hcCHHHHHHHHhcCCCCCHHHHHHcCccccc
Q psy12573 240 KVPLGVVRSMTITGIPISAQDAYNAGLITRV 270 (315)
Q Consensus 240 ~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v 270 (315)
.+......+.+..+..++++||+++|||+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 131 GQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred CCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 1233456777888899999999999999875
No 156
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.17 E-value=4.9e-11 Score=105.26 Aligned_cols=170 Identities=18% Similarity=0.209 Sum_probs=121.1
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+++++..+..+++|+|++|+|.+.|+|..+++.||++++++.++|+.|+.+ ++.+..+...+..+. + |..
T Consensus 113 ~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprl----v-----G~~ 183 (360)
T TIGR03200 113 FNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLM----I-----GCE 183 (360)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHh----h-----CHH
Confidence 445667788899999999999999999999999999999999999999999 999887766543222 2 777
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHH----hh---hcCHHHHHH--HHhcCCCCCHHHHH-HcCc
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VAL----TR---KVPLGVVRS--MTITGIPISAQDAY-NAGL 266 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l----~~---~~g~~~a~~--~~~~g~~~~a~~a~-~~Gl 266 (315)
.+ ++++++|+.+.+.++ .++|++..+.. ..+ .+ .+-.....+ -+..|+...++++. -..+
T Consensus 184 rA--~~llltGe~~sA~EA-------~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~ 254 (360)
T TIGR03200 184 QA--MVSGTLCEPWSAHKA-------KRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKEL 254 (360)
T ss_pred HH--HHHHHhCCcCcHHHH-------HHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHH
Confidence 76 999999999999999 67777744411 111 00 000111111 23345555543331 2234
Q ss_pred cccc-cCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q psy12573 267 ITRV-VSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQM 307 (315)
Q Consensus 267 v~~v-~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~ 307 (315)
+... .+. ..+++.+.+++.+++..-|..+..+|..++...
T Consensus 255 ~~~~~~~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
T TIGR03200 255 IKQGTIDL-SLLDEAVEALCAKLLNTFPECLTKSIEELRKPK 295 (360)
T ss_pred HhcccchH-hHHHHHHHHHHHHHHHhchHHHHHHHHHhhhHH
Confidence 4443 334 678899999999999999999999998887643
No 157
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.17 E-value=1.7e-10 Score=92.37 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=76.7
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch----------------HHHHhhh
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP----------------AVALTRK 240 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~----------------~~~l~~~ 240 (315)
.+++.+..+++|+++.++|.|.++|..++++||.+++.+.++|+++....+..+... ...+.+.
T Consensus 49 ~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 128 (160)
T cd07016 49 AIYNALKRHKGKVTVKIDGLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEK 128 (160)
T ss_pred HHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999999999999999999999999999999999877766543321 1125566
Q ss_pred cC--HHHHHHHHhcCCCCCHHHHHHcCccccc
Q psy12573 241 VP--LGVVRSMTITGIPISAQDAYNAGLITRV 270 (315)
Q Consensus 241 ~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v 270 (315)
.| ....++++..+..++++||+++|++|++
T Consensus 129 ~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 129 TGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred hCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 77 5677778777778999999999999875
No 158
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=3.6e-11 Score=104.17 Aligned_cols=150 Identities=21% Similarity=0.313 Sum_probs=102.8
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+++++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+.. +.-+ |+.
T Consensus 89 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l----~~~v-----G~~ 159 (260)
T PRK05980 89 GQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRL----PRLA-----GRK 159 (260)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHH----Hhhc-----CHH
Confidence 345667788899999999999999999999999999999999999999999 998877765432 2222 777
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhc---CH---HHHHHHHhcCCCCCHHHH--
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKV---PL---GVVRSMTITGIPISAQDA-- 261 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~---g~---~~a~~~~~~g~~~~a~~a-- 261 (315)
.+ .+++++++.+.+.++ .++|++.... . . .+.+.+ .+ ...|+.+..+...+.+++
T Consensus 160 ~a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~ 230 (260)
T PRK05980 160 RA--LELLLTGDAFSAERA-------LEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLL 230 (260)
T ss_pred HH--HHHHHcCCccCHHHH-------HHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 77 999999999999999 7778875542 1 1 122111 11 234555554433333333
Q ss_pred HHcCccccccCCchHHHHHHHHHHHH
Q psy12573 262 YNAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 262 ~~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
.+.......+.+ ++..+...+|.++
T Consensus 231 ~e~~~~~~~~~~-~~~~e~~~af~~k 255 (260)
T PRK05980 231 IESEQFARMAGS-ADLREGLAAWIER 255 (260)
T ss_pred HHHHHHHHHhcC-hhHHHHHHHHhcc
Confidence 222333444555 5666666666544
No 159
>PLN02600 enoyl-CoA hydratase
Probab=99.16 E-value=3.3e-11 Score=103.75 Aligned_cols=149 Identities=16% Similarity=0.242 Sum_probs=107.2
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
..++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+...+ .+ |+..
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~~-----G~~~ 148 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPR----LV-----GRSR 148 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHH----Hh-----CHHH
Confidence 45566788899999999999999999999999999999999999999999 98887665543322 12 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH--H
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV---P---LGVVRSMTITGIPISAQDA--Y 262 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~ 262 (315)
+ .+|+++++.+.+.++ .++|++.... . ..+.+.+ + ....|+++......+..++ .
T Consensus 149 a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~ 219 (251)
T PLN02600 149 A--KELIFTGRRIGAREA-------ASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEI 219 (251)
T ss_pred H--HHHHHhCCccCHHHH-------HHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 7 999999999999999 6777764431 1 1122222 1 1355777665444444443 3
Q ss_pred HcCccccccCCchHHHHHHHHHHHH
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+......++.+ ++..+...+|.++
T Consensus 220 e~~~~~~~~~~-~d~~eg~~af~ek 243 (251)
T PLN02600 220 EEECYEQVLKT-KDRLEGLAAFAEK 243 (251)
T ss_pred HHHHHHHHhCC-HHHHHHHHHHhcC
Confidence 33455566677 7788888887765
No 160
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.16 E-value=5.5e-10 Score=107.19 Aligned_cols=93 Identities=28% Similarity=0.362 Sum_probs=81.1
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.++++.++++.|++.+++|.+++.| |++..|..++ +....++..+++. +++|||++|.+++.++.. ++.+||
T Consensus 364 ~~~~~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~-~~~~~~~~~~~~~-~g~mG~glpaaiGa~la~----p~~~vv 437 (557)
T PRK08199 364 PGAVQLGEVMAWLRERLPADAIITNGAGNYATWLHRF-FRFRRYRTQLAPT-SGSMGYGLPAAIAAKLLF----PERTVV 437 (557)
T ss_pred CCCcCHHHHHHHHHHhCCCCeEEEECChHHHHHHHHh-cCcCCCCeEECCC-CccccchHHHHHHHHHhC----CCCcEE
Confidence 35799999999999999999999999 7777887777 7777777777654 599999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++++++.+|.+..+
T Consensus 438 ~i~GDGsf~~~~~el~ta~~ 457 (557)
T PRK08199 438 AFAGDGCFLMNGQELATAVQ 457 (557)
T ss_pred EEEcchHhhccHHHHHHHHH
Confidence 99999999999999988764
No 161
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.15 E-value=5.2e-11 Score=103.84 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=109.2
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hH-HHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-IL-VSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
.++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++ .+..+..+...+ +.|+..
T Consensus 98 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~---------~~G~~~ 168 (278)
T PLN03214 98 TFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGR---------VIDRKV 168 (278)
T ss_pred HHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHH---------hcCHHH
Confidence 4556788899999999999999999999999999999999999999999 88 476655442222 127777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc------CHHHHHHHHhcCCCCCHHHHH--
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV------PLGVVRSMTITGIPISAQDAY-- 262 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~------g~~~a~~~~~~g~~~~a~~a~-- 262 (315)
+ .+++++++.+.+.++ .++|++.... . ..+.+.+ .....|+++......+.++++
T Consensus 169 a--~~llltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~ 239 (278)
T PLN03214 169 A--ESLLLRGRLVRPAEA-------KQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATKALLREEFSAAWEAYYEE 239 (278)
T ss_pred H--HHHHHcCCccCHHHH-------HHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7 999999999999999 6777774431 1 1122221 123566666554333333332
Q ss_pred HcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSAILEN 291 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~ 291 (315)
+.......+.+ ++..+...+|.+||.++
T Consensus 240 e~~~~~~~~~s-~d~~egi~aflek~~~~ 267 (278)
T PLN03214 240 EAKGGWKMLSE-PSIIKALGGVMERLSSG 267 (278)
T ss_pred HHHHHHHHhCC-HHHHHHHHHHHHHHhhc
Confidence 22334456778 89999999999999875
No 162
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.14 E-value=6.9e-10 Score=88.40 Aligned_cols=145 Identities=19% Similarity=0.197 Sum_probs=97.4
Q ss_pred HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q psy12573 12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 90 (315)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g 90 (315)
..+++.|.+.+ +|.+++.| |.+..|. . +....|+++++ +++||+++|.+++.++.. + .+||+|+|||
T Consensus 2 ~~~~~~l~~~l-~d~~vv~d~G~~~~~~--~-~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG 69 (157)
T cd02001 2 IAAIAEIIEAS-GDTPIVSTTGYASREL--Y-DVQDRDGHFYM---LGSMGLAGSIGLGLALGL----S-RKVIVVDGDG 69 (157)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCHhHHHH--H-HhhcCCCCEEe---ecchhhHHHHHHHHHhcC----C-CcEEEEECch
Confidence 46788999999 78889999 7766655 2 34456778876 799999999999999974 4 7899999999
Q ss_pred CccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcE-EEEEeeEEecc---cchhccccChhhhhhhcCCCCc
Q psy12573 91 AFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPI-LAIISGVAAAA---GCQLVATCDLAIATTASKFSTP 166 (315)
Q Consensus 91 ~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~v~G~~~g~---G~~f~~g~D~~~~~~~~~~~~~ 166 (315)
++.+..+++.+..+. .+.|+ +.++|--.+|. ........|+..+++. ++.+
T Consensus 70 ~f~m~~~el~t~~~~-----------------------~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a--~G~~ 124 (157)
T cd02001 70 SLLMNPGVLLTAGEF-----------------------TPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAA--CGYL 124 (157)
T ss_pred HHHhcccHHHHHHHh-----------------------cCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHH--CCCc
Confidence 988888888776531 01232 33333322221 1122235788877776 5555
Q ss_pred chh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 167 GYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 167 ~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
..+ ....++...+......+.|.+..+
T Consensus 125 ~~~v~~~~el~~al~~a~~~~gp~vi~v 152 (157)
T cd02001 125 VLSAPLLGGLGSEFAGLLATTGPTLLHA 152 (157)
T ss_pred eEEcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 555 555566666666656677776544
No 163
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.13 E-value=5.1e-11 Score=103.96 Aligned_cols=152 Identities=15% Similarity=0.247 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
..+++++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+.. +..+ |
T Consensus 98 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l----~~~v-----G 168 (275)
T PLN02664 98 KFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRL----PSIV-----G 168 (275)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHH----HHHh-----C
Confidence 34456677888999999999999999999999999999999999999999999 998877655432 2223 8
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch---H------HHHhhhcC------HHHHHHHHhcCCCCCHHH
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP---A------VALTRKVP------LGVVRSMTITGIPISAQD 260 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~---~------~~l~~~~g------~~~a~~~~~~g~~~~a~~ 260 (315)
+..+ .+++++++.+.+.++ .++|++.... . ..+.+.+. ....|+++..+...+..+
T Consensus 169 ~~~A--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~ 239 (275)
T PLN02664 169 YGNA--MELALTGRRFSGSEA-------KELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQ 239 (275)
T ss_pred HHHH--HHHHHhCCCCCHHHH-------HHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHH
Confidence 8887 999999999999999 7777774431 1 11222221 135677776554444444
Q ss_pred HHHc--CccccccCCchHHHHHHHHHHHH
Q psy12573 261 AYNA--GLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 261 a~~~--Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+.+. .+....+.+ ++..+...+|.++
T Consensus 240 ~~~~e~~~~~~~~~~-~d~~eg~~af~ek 267 (275)
T PLN02664 240 GLDYVATWNSAMLVS-DDLNEAVSAQIQK 267 (275)
T ss_pred HHHHHHHHHHHhccC-hhHHHHHHHHhcc
Confidence 4332 234455566 7788888877765
No 164
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.13 E-value=6.4e-11 Score=102.42 Aligned_cols=149 Identities=20% Similarity=0.267 Sum_probs=103.2
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
+.++..+..+|+|+|++++|.+.|+|..++..||++++.+.++|+.|+.+ |+.+.++..++..+. + |...
T Consensus 84 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----v-----G~~~ 154 (257)
T PRK07658 84 QVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRY----V-----GKAK 154 (257)
T ss_pred HHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHH----h-----CHHH
Confidence 34567788899999999999999999999999999999999999999999 999887765433221 2 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHH--H
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDA--Y 262 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~ 262 (315)
+ .+|+++++.+.+.++ .++|++.... ...+.+.+ . ....|+++..+...+.+++ .
T Consensus 155 a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~ 225 (257)
T PRK07658 155 A--LEMMLTSEPITGAEA-------LKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKR 225 (257)
T ss_pred H--HHHHHcCCCcCHHHH-------HHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7 999999999999999 6667664431 11122211 1 1345666655443343333 2
Q ss_pred HcCccccccCCchHHHHHHHHHHHH
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+..+...++.+ ++..+...+|.++
T Consensus 226 e~~~~~~~~~~-~~~~egi~af~~k 249 (257)
T PRK07658 226 EAKIFGEVFTS-EDAKEGVQAFLEK 249 (257)
T ss_pred HHHHHHHHhCC-HHHHHHHHHHHcC
Confidence 23344455556 6666666666554
No 165
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=8.6e-11 Score=101.40 Aligned_cols=149 Identities=21% Similarity=0.225 Sum_probs=101.7
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+.+++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+ +..+..+ .+|.-+ |+.
T Consensus 89 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~----~l~~~i-----G~~ 158 (256)
T PRK06143 89 LRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAA----LLPRLI-----GWA 158 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHH----HHHHhc-----CHH
Confidence 345667788999999999999999999999999999999999999999999 87 5444333 222223 887
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhcC------HHHHHHHHhcCCCCCHHHH--
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKVP------LGVVRSMTITGIPISAQDA-- 261 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~g------~~~a~~~~~~g~~~~a~~a-- 261 (315)
.+ .+++++++.+.+.++ .++|++.... . . .+.+.+. ....|+++......+.+++
T Consensus 159 ~a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~ 229 (256)
T PRK06143 159 RT--RWLLLTGETIDAAQA-------LAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLLREWEDMPLDVAID 229 (256)
T ss_pred HH--HHHHHcCCcCCHHHH-------HHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 77 999999999999999 7888875541 1 1 1222211 1245666654433333333
Q ss_pred HHcCccccccCCchHHHHHHHHHHHH
Q psy12573 262 YNAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 262 ~~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
.+.......+.+ ++..+...+|.++
T Consensus 230 ~e~~~~~~~~~~-~d~~e~~~af~ek 254 (256)
T PRK06143 230 DSVAEFGAAFLT-GEPQRHMAAFLNR 254 (256)
T ss_pred HHHHHHHHHhcC-hHHHHHHHHHHhh
Confidence 223334455556 6666666666554
No 166
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=4.3e-11 Score=103.45 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=101.6
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
.+++..+.++++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+ .+ |+..
T Consensus 85 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~i-----G~~~ 155 (258)
T PRK09076 85 GEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPW----LV-----GEGW 155 (258)
T ss_pred HHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHH----Hh-----CHHH
Confidence 35566788999999999999999999999999999999999999999999 99887765543222 12 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhcC------HHHHHHHHhcCCCCCHHHHH--
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKVP------LGVVRSMTITGIPISAQDAY-- 262 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~g------~~~a~~~~~~g~~~~a~~a~-- 262 (315)
+ .+|+++++.+.+.++ .++|++.... ...+.+.+. ....|+++..+...+..+..
T Consensus 156 a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~ 226 (258)
T PRK09076 156 A--KRMILCGERVDAATA-------LRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAALAL 226 (258)
T ss_pred H--HHHHHcCCcCCHHHH-------HHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7 999999999999999 6777774431 111222211 12445655544333333332
Q ss_pred HcCccccccCCchHHHHHHHHHHHH
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+......++.+ ++..+...+|.++
T Consensus 227 e~~~~~~~~~~-~~~~eg~~af~~k 250 (258)
T PRK09076 227 ERELFVDLFDT-EDQREGVNAFLEK 250 (258)
T ss_pred HHHHHHHHhcC-chHHHHHHHHhcC
Confidence 22334445555 5666666666543
No 167
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=4.3e-11 Score=103.20 Aligned_cols=149 Identities=18% Similarity=0.181 Sum_probs=103.6
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
++++..+...++|+|++|||.+.|+|..++..||++++.+.++|+.|+.+ |+.+.++..++..+. + |+..
T Consensus 82 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----i-----G~~~ 152 (255)
T PRK08150 82 HRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRL----I-----GVAR 152 (255)
T ss_pred HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHH----h-----CHHH
Confidence 34566788899999999999999999999999999999999999999999 998887766533222 2 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhcC------HHHHHHHHhcCCCCCHHHHHH-
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKVP------LGVVRSMTITGIPISAQDAYN- 263 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~g------~~~a~~~~~~g~~~~a~~a~~- 263 (315)
+ .+|+++++.+.+.++ .++|++.... ...+.+.+. ....|+++......+.+++.+
T Consensus 153 a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~ 223 (255)
T PRK08150 153 M--TDMMLTGRVYDAQEG-------ERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALPRIADMSADDGLFV 223 (255)
T ss_pred H--HHHHHcCCcCCHHHH-------HHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 6 999999999999999 6777774331 112222221 124566666554444444322
Q ss_pred -cCccccccCCchHHHHHHHHHHHH
Q psy12573 264 -AGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 264 -~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
.-.....+.+ ++..+...+|.++
T Consensus 224 e~~~~~~~~~s-~d~~eg~~af~~k 247 (255)
T PRK08150 224 ESLMAAVAQSA-PEAKERLRAFLEK 247 (255)
T ss_pred HHHHHHHHhcC-HHHHHHHHHHhcc
Confidence 2223344555 6666666666554
No 168
>KOG1680|consensus
Probab=99.12 E-value=1.7e-11 Score=102.39 Aligned_cols=141 Identities=19% Similarity=0.268 Sum_probs=108.2
Q ss_pred cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHh
Q psy12573 128 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVA 206 (315)
Q Consensus 128 ~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l 206 (315)
+.++|+|++++|++.|+|.+|+.-||++++.+.++|+.++.+ |.++.++++.+. +. +.|...+ +++.+
T Consensus 125 ~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl----~r-----~vG~s~A--le~~l 193 (290)
T KOG1680|consen 125 RLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRL----PR-----IVGKSRA--LEMIL 193 (290)
T ss_pred hcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhH----HH-----HhChHHH--HHHHH
Confidence 678999999999999999999999999999999999999999 999999887643 22 3488888 99999
Q ss_pred hcCeeeeeCCceeeCCCccCCCCCCc-h-------HHHHhhhcCH------HHHHHHHhcCCCCCHHHHHHcC--ccccc
Q psy12573 207 TCDLAIATTASKFSTPGARHGIFCST-P-------AVALTRKVPL------GVVRSMTITGIPISAQDAYNAG--LITRV 270 (315)
Q Consensus 207 ~~d~~~a~~~a~~~~pe~~~Gl~~~~-~-------~~~l~~~~g~------~~a~~~~~~g~~~~a~~a~~~G--lv~~v 270 (315)
+++.+.|.++ .++|++..+ + +..|.+.+.. ...|+.+..+...+..++++++ +....
T Consensus 194 tg~~~~AqeA-------~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~ 266 (290)
T KOG1680|consen 194 TGRRLGAQEA-------KKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGST 266 (290)
T ss_pred hcCcccHHHH-------HhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhh
Confidence 9999999999 888888544 1 1234443332 3678888887777877775554 33444
Q ss_pred cCCchHHHHHHHHHHHH
Q psy12573 271 VSSNEELESETKVLTSA 287 (315)
Q Consensus 271 ~~~~~~~~~~~~~~~~~ 287 (315)
+.. ++-.|...+|+++
T Consensus 267 ~~~-~d~~Eg~~~f~~k 282 (290)
T KOG1680|consen 267 FAT-EDRLEGMTAFAEK 282 (290)
T ss_pred hhh-HHHHHHHHHhccc
Confidence 445 5666666666443
No 169
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=7.5e-11 Score=102.12 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
++++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+. + |+..
T Consensus 87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~----v-----G~~~ 157 (260)
T PRK07657 87 RTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRL----I-----GVGR 157 (260)
T ss_pred HHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHH----h-----CHHH
Confidence 45566788899999999999999999999999999999999999999999 998877655433221 2 7666
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH--H
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDA--Y 262 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~ 262 (315)
+ .+++++++.+.+.++ .++|++.... . ..+.+.+ + ....|+++..+...+.+++ .
T Consensus 158 a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~ 228 (260)
T PRK07657 158 A--KELIYTGRRISAQEA-------KEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQI 228 (260)
T ss_pred H--HHHHHhCCCCCHHHH-------HHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 6 899999999999999 6777775431 1 1122221 1 1245566554433333333 2
Q ss_pred HcCccccccCCchHHHHHHHHHHHH
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+.......+.+ ++..+...+|.++
T Consensus 229 e~~~~~~~~~~-~~~~e~~~af~~~ 252 (260)
T PRK07657 229 EKQAYEGTIPT-KDRLEGLQAFKEK 252 (260)
T ss_pred HHHHHHHHhcC-HhHHHHHHHHhcC
Confidence 22334444555 5666666665544
No 170
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.11 E-value=1.8e-09 Score=88.54 Aligned_cols=84 Identities=29% Similarity=0.357 Sum_probs=65.3
Q ss_pred HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhc-cC---CCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy12573 12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLL-NN---LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 86 (315)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~-~~---~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl 86 (315)
.++++.|.+.+|+|.+++.| |....... .+. .+ .+..+++. ++||+++|.+++.++.. |+.+||+|
T Consensus 2 ~~~~~~l~~~l~~d~ivv~d~G~~~~~~~--~~~~~~~~~~~~~~~~~---g~mG~~lpaAiGaala~----p~~~Vv~i 72 (188)
T cd03371 2 EDAIEIVLSRAPATAAVVSTTGMTSRELF--ELRDRPGGGHAQDFLTV---GSMGHASQIALGIALAR----PDRKVVCI 72 (188)
T ss_pred HHHHHHHHhhcCCCCEEEECCCcchHHHH--HhhcCCCCCccCceeec---CccccHHHHHHHHHHhC----CCCcEEEE
Confidence 46788999999999999999 75442222 222 22 34666664 99999999999999985 78899999
Q ss_pred EcCCCccccchhhhHHhh
Q psy12573 87 QGDSAFGFSGMELETLAV 104 (315)
Q Consensus 87 ~g~g~~~~aG~Dl~~~~~ 104 (315)
+|||+++++.++|.+..+
T Consensus 73 ~GDG~f~m~~~eL~ta~~ 90 (188)
T cd03371 73 DGDGAALMHMGGLATIGG 90 (188)
T ss_pred eCCcHHHhhccHHHHHHH
Confidence 999999888888877653
No 171
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=5.6e-11 Score=103.63 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
..+++++..+..+|+|+|++|+|.+.|+|..+++.||++++++.++|+.|+.+ |+.+..+..+...+. + |
T Consensus 96 ~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----~-----G 166 (272)
T PRK06142 96 LRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRI----I-----G 166 (272)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHH----h-----C
Confidence 34556777888999999999999999999999999999999999999999999 998877765433222 2 7
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H--------HHHhhhc---CH---HHHHHHHhcCCCCCHHH
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A--------VALTRKV---PL---GVVRSMTITGIPISAQD 260 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~--------~~l~~~~---g~---~~a~~~~~~g~~~~a~~ 260 (315)
+..+ .+++++++.+.+.++ .++|++.... . ..+.+.+ ++ ...|+++......+.++
T Consensus 167 ~~~a--~~l~l~g~~~~a~eA-------~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~ 237 (272)
T PRK06142 167 DGHL--RELALTGRDIDAAEA-------EKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVAD 237 (272)
T ss_pred HHHH--HHHHHhCCCcCHHHH-------HHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHH
Confidence 7777 999999999999999 7777774431 1 1122222 11 24566665443333333
Q ss_pred H--HHcCccccccCCchHHHHHHHHHHHH
Q psy12573 261 A--YNAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 261 a--~~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+ .+..+....+.+ ++..+.+.+|.++
T Consensus 238 ~~~~~~~~~~~~~~~-~d~~egv~af~~k 265 (272)
T PRK06142 238 GLRYVATWNAAMLPS-KDLTEAIAAHMEK 265 (272)
T ss_pred HHHHHHHHHHHHhcC-ccHHHHHHHHhcC
Confidence 3 222344445566 6777777777654
No 172
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.11 E-value=6.3e-11 Score=103.28 Aligned_cols=150 Identities=16% Similarity=0.110 Sum_probs=107.3
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
+.++..+..+|+|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+. + |+..
T Consensus 94 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----i-----G~~~ 164 (275)
T PRK09120 94 YGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADT----V-----GHRD 164 (275)
T ss_pred HHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHH----c-----CHHH
Confidence 45567788999999999999999999999999999999999999999999 999887665433222 2 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---CH---HHHHHHHhcCCCCCHHHHHHc
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---PL---GVVRSMTITGIPISAQDAYNA 264 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g~---~~a~~~~~~g~~~~a~~a~~~ 264 (315)
+ .+|+++++.+.+.++ .++|++.... ...+.+.+ ++ ...|+++......+..++.+.
T Consensus 165 a--~~llltg~~~~A~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~ 235 (275)
T PRK09120 165 A--LYYIMTGETFTGRKA-------AEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDY 235 (275)
T ss_pred H--HHHHhcCCccCHHHH-------HHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7 999999999999999 7778775441 11222222 11 355777766555555555332
Q ss_pred C----ccccccCCch-HHHHHHHHHHHHH
Q psy12573 265 G----LITRVVSSNE-ELESETKVLTSAI 288 (315)
Q Consensus 265 G----lv~~v~~~~~-~~~~~~~~~~~~l 288 (315)
. .....+.+ + +..+...+|.++-
T Consensus 236 e~~~~~~~~~~~~-~~d~~eg~~afl~kr 263 (275)
T PRK09120 236 LYAKLEQANSLDP-EGGREEGLKQFLDDK 263 (275)
T ss_pred HHHHHHHHHhhCC-HHHHHHHHHHHHhcc
Confidence 1 22234555 5 6777877777653
No 173
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=1e-10 Score=100.57 Aligned_cols=146 Identities=14% Similarity=0.215 Sum_probs=102.6
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
...+..+.++++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+......+ +.-+ |+..
T Consensus 84 ~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~~~l-------~~~v-----g~~~ 151 (249)
T PRK07938 84 FAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAATHL-------QRLV-----PQHL 151 (249)
T ss_pred HHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhHHHH-------HHhc-----CHHH
Confidence 34566788899999999999999999999999999999999999999999 875322211 1112 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhcC------HHHHHHHHhcCCCCCHHHH--H
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKVP------LGVVRSMTITGIPISAQDA--Y 262 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~g------~~~a~~~~~~g~~~~a~~a--~ 262 (315)
+ .+++++++.+.+.++ .++|++.... ...+.+.+. ...+|+++......+.+++ .
T Consensus 152 a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~ 222 (249)
T PRK07938 152 M--RALFFTAATITAAEL-------HHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRW 222 (249)
T ss_pred H--HHHHHhCCcCCHHHH-------HHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7 999999999999999 7778775431 112332221 1356777765544333333 3
Q ss_pred HcCccccccCCchHHHHHHHHHHHH
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+..+....+.+ ++..+...+|.+|
T Consensus 223 e~~~~~~~~~~-~d~~eg~~af~ek 246 (249)
T PRK07938 223 EQGFTFELNLA-GVSDEHRDAFVEK 246 (249)
T ss_pred HHHHHHHHhcC-ccHHHHHHHHHhc
Confidence 33444455667 7788888777765
No 174
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.10 E-value=5.8e-11 Score=102.84 Aligned_cols=96 Identities=23% Similarity=0.258 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+++++..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+++..+..+...+.. |+.
T Consensus 87 ~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v---------g~~ 157 (260)
T PRK07511 87 LHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARAL---------PRQ 157 (260)
T ss_pred HHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHh---------CHH
Confidence 456677888999999999999999999999999999999999999999999 9998776655433322 777
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+ .+++++++.+.+.++ .++|++...
T Consensus 158 ~a--~~l~ltg~~~~a~eA-------~~~Glv~~v 183 (260)
T PRK07511 158 LA--TELLLEGKPISAERL-------HALGVVNRL 183 (260)
T ss_pred HH--HHHHHhCCCCCHHHH-------HHcCCccEe
Confidence 66 999999999999999 666776443
No 175
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.10 E-value=2.5e-10 Score=103.31 Aligned_cols=96 Identities=23% Similarity=0.277 Sum_probs=85.7
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCC
Q psy12573 3 QDESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK 81 (315)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~ 81 (315)
+..+.||+++++++.+...+.++++|+.| |.+.+.+.+ +..|+...++....||++||.+|++||++++. ++.
T Consensus 357 ~~~~~pLtq~~~w~~~~~fl~p~dviiaetGtS~FG~~~--~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~----~dr 430 (557)
T COG3961 357 PPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGALD--IRLPKGATFISQPLWGSIGYTLPAALGAALAA----PDR 430 (557)
T ss_pred CCCCCcccHHHHHHHHHhhCCCCCEEEEcccccccccee--eecCCCCeEEcccchhhcccccHhhhhhhhcC----CCc
Confidence 44578999999999999999999999999 877766654 67899999999999999999999999999985 889
Q ss_pred eEEEEEcCCCccccchhhhHHhh
Q psy12573 82 RVVCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 82 ~vvvl~g~g~~~~aG~Dl~~~~~ 104 (315)
|+|+|.|||.++.+.++++++.+
T Consensus 431 R~IL~iGDGs~QlTvQEiStmiR 453 (557)
T COG3961 431 RVILFIGDGSLQLTVQEISTMIR 453 (557)
T ss_pred cEEEEEcCchhhhhHHHHHHHHH
Confidence 99999999999999999988865
No 176
>PRK07524 hypothetical protein; Provisional
Probab=99.10 E-value=1.1e-09 Score=104.80 Aligned_cols=166 Identities=22% Similarity=0.342 Sum_probs=112.5
Q ss_pred CCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCccccc-CCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 8 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLD-AGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~-~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
++++.++++.|++.+| +.+++.| |++..|..+. +..++|..+++ +..+++|||++|.+++.++.. |+.+||+
T Consensus 357 ~~~~~~~~~~l~~~l~-~~~i~~d~g~~~~~~~~~-~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~----p~~~vv~ 430 (535)
T PRK07524 357 TAAQVALLDTILAALP-DAIFVGDSTQPVYAGNLY-FDADAPRRWFNASTGYGTLGYGLPAAIGAALGA----PERPVVC 430 (535)
T ss_pred ccCHHHHHHHHHHhCC-CCEEEeCCcHHHHHHHHh-cccCCCCceEeCCCCcccccchHHHHHHHHHhC----CCCcEEE
Confidence 5678889999999997 6777888 6666666666 88888999998 888999999999999999985 8889999
Q ss_pred EEcCCCccccchhhhHHhhhccCchhH----HH-HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh
Q psy12573 86 VQGDSAFGFSGMELETLAVDKEGRPKL----DE-IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA 160 (315)
Q Consensus 86 l~g~g~~~~aG~Dl~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~ 160 (315)
++|||++++++++|.+..+... |-. +| .+..+...... ...+ + .+..+ ...|+..+++.
T Consensus 431 i~GDG~f~~~~~el~ta~~~~l--pi~~vV~NN~~~g~i~~~~~~-~~~~-~-----------~~~~~-~~~d~~~~A~a 494 (535)
T PRK07524 431 LVGDGGLQFTLPELASAVEADL--PLIVLLWNNDGYGEIRRYMVA-RDIE-P-----------VGVDP-YTPDFIALARA 494 (535)
T ss_pred EEcchHHhhhHHHHHHHHHhCC--CeEEEEEECCchHHHHHHHHH-hcCC-c-----------cccCC-CCCCHHHHHHH
Confidence 9999999999999988875221 110 00 00101111100 0000 0 01112 23677777776
Q ss_pred cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 161 SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
|+.+..+ ....++...+......++|++..|.=.+
T Consensus 495 --~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~ 530 (535)
T PRK07524 495 --FGCAAERVADLEQLQAALRAAFARPGPTLIEVDQAC 530 (535)
T ss_pred --CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEECCc
Confidence 4555544 5556666777777778889887776433
No 177
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.10 E-value=4.9e-11 Score=102.08 Aligned_cols=146 Identities=19% Similarity=0.238 Sum_probs=100.1
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
+++..+...++|+|++|+|.+.|+|..+...||++++++.++|+.|+.+ |+.+..+..+...+. + |+..+
T Consensus 77 ~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~----~-----G~~~a 147 (243)
T PRK07854 77 EMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSL----V-----GGGRA 147 (243)
T ss_pred HHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHH----h-----CHHHH
Confidence 4556778899999999999999999999999999999999999999999 998876655433221 2 77777
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch----HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--HcCcc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP----AVALTRKV---P---LGVVRSMTITGIPISAQDAY--NAGLI 267 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~----~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~Glv 267 (315)
.+|+++++.+.+.++ .++|++.... ...+.+.+ + ....|+++... .+.+++. +.-..
T Consensus 148 --~~l~ltg~~~~a~eA-------~~~Glv~~v~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~ 216 (243)
T PRK07854 148 --RAMLLGAEKLTAEQA-------LATGMANRIGTLADAQAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELF 216 (243)
T ss_pred --HHHHHcCCCcCHHHH-------HHCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHH
Confidence 999999999999999 7777775542 11222222 1 12456665543 2223322 22233
Q ss_pred ccccCCchHHHHHHHHHHHH
Q psy12573 268 TRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 268 ~~v~~~~~~~~~~~~~~~~~ 287 (315)
..++.+ ++..+...+|.++
T Consensus 217 ~~~~~~-~d~~eg~~af~~k 235 (243)
T PRK07854 217 DKAWAS-QDAIEAQVARIEK 235 (243)
T ss_pred HHHhcC-chHHHHHHHHhCC
Confidence 444555 5666666666544
No 178
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.09 E-value=9.2e-11 Score=101.26 Aligned_cols=96 Identities=24% Similarity=0.363 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+++++..+...|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+.. ++-+ |+.
T Consensus 87 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l----~~~v-----g~~ 157 (255)
T PRK07260 87 VNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLL----TRAI-----GLN 157 (255)
T ss_pred HHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhh----HHhh-----CHH
Confidence 445667888999999999999999999999999999999999999999999 998877655422 2222 777
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+ .+|+++++.+.++++ .++|++...
T Consensus 158 ~a--~~l~l~g~~~sa~eA-------~~~Glv~~v 183 (255)
T PRK07260 158 RA--THLAMTGEALTAEKA-------LEYGFVYRV 183 (255)
T ss_pred HH--HHHHHhCCccCHHHH-------HHcCCccee
Confidence 76 999999999999999 777777544
No 179
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.08 E-value=9.1e-11 Score=101.41 Aligned_cols=93 Identities=26% Similarity=0.394 Sum_probs=78.5
Q ss_pred HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAA 200 (315)
Q Consensus 122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~ 200 (315)
.+..+...|+|+|+++||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..++..+ -+ |+..+
T Consensus 86 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~v-----G~~~a- 155 (257)
T PRK05862 86 NWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTR----AV-----GKAKA- 155 (257)
T ss_pred HHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHH----Hh-----CHHHH-
Confidence 455678899999999999999999999999999999999999999999 99988776543322 12 77776
Q ss_pred hhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 201 GCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+++++++.+.+.++ .++|++...
T Consensus 156 -~~l~l~g~~~~a~eA-------~~~Glv~~v 179 (257)
T PRK05862 156 -MDLCLTGRMMDAAEA-------ERAGLVSRV 179 (257)
T ss_pred -HHHHHhCCccCHHHH-------HHcCCCCEe
Confidence 999999999999999 777877554
No 180
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.08 E-value=1.5e-10 Score=100.48 Aligned_cols=148 Identities=20% Similarity=0.260 Sum_probs=101.4
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
..++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+ ..+. + |...
T Consensus 91 ~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~-l~~~----v-----G~~~ 160 (265)
T PRK05674 91 AELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPF-VVKA----I-----GERA 160 (265)
T ss_pred HHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHH-HHHH----h-----CHHH
Confidence 45667788999999999999999999999999999999999999999999 9988765432 2221 2 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--HH------HHhhhc---C---HHHHHHHHhcCCCCCHHHHHH-
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--AV------ALTRKV---P---LGVVRSMTITGIPISAQDAYN- 263 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~~------~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~- 263 (315)
+ .+++++++.+.+.++ ..+|++.... .. .+.+.+ . ....|+++......+..++++
T Consensus 161 a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~ 231 (265)
T PRK05674 161 A--RRYALTAERFDGRRA-------RELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGELSPALRR 231 (265)
T ss_pred H--HHHHHhCcccCHHHH-------HHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHH
Confidence 7 999999999999999 7788875541 11 122211 1 124466655544443333321
Q ss_pred --cCccccccCCchHHHHHHHHHHHH
Q psy12573 264 --AGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 264 --~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
......++.+ ++..+...+|.++
T Consensus 232 ~~~~~~~~~~~s-~d~~e~~~af~~k 256 (265)
T PRK05674 232 YCENAIARIRVS-AEGQEGLRAFLEK 256 (265)
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHcc
Confidence 1233344455 6666666666554
No 181
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.07 E-value=2.7e-09 Score=101.90 Aligned_cols=94 Identities=24% Similarity=0.291 Sum_probs=81.8
Q ss_pred CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573 5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83 (315)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v 83 (315)
.+.++++..+++.|++.++++.+++.| |++..|..+. +..+++..+++.. +++||+++|.+++.++.. ++.++
T Consensus 355 ~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~-~g~mG~~lp~aiGa~la~----p~~~v 428 (530)
T PRK07092 355 PGEPLSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEH-LPMRRQGSFYTMA-SGGLGYGLPAAVGVALAQ----PGRRV 428 (530)
T ss_pred CCCCcCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHh-cCcCCCCceEccC-CCcccchHHHHHHHHHhC----CCCeE
Confidence 356799999999999999999999999 7777888776 7777888888764 499999999999999985 78899
Q ss_pred EEEEcCCCccccchhhhHHhh
Q psy12573 84 VCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 84 vvl~g~g~~~~aG~Dl~~~~~ 104 (315)
|+|+|||++.++..+|.+..+
T Consensus 429 v~i~GDG~f~~~~~eL~ta~~ 449 (530)
T PRK07092 429 IGLIGDGSAMYSIQALWSAAQ 449 (530)
T ss_pred EEEEeCchHhhhHHHHHHHHH
Confidence 999999999988888888765
No 182
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.07 E-value=1.3e-10 Score=101.59 Aligned_cols=150 Identities=24% Similarity=0.298 Sum_probs=103.9
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHH-HHHHHHHHHhcCCCcEEEEEccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVS-TCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
+++++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+ .++..+...+. + |+
T Consensus 102 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~----v-----G~ 172 (277)
T PRK08258 102 TGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRI----I-----GQ 172 (277)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHH----h-----CH
Confidence 345677888999999999999999999999999999999999999999999 8874 55544322221 2 77
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH-
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV---P---LGVVRSMTITGIPISAQDA- 261 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a- 261 (315)
..+ .+|+++++.+.+.++ .++|++.... . ..+.+.+ + ....|+++......+.+++
T Consensus 173 ~~a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~ 243 (277)
T PRK08258 173 GRA--SELLYTGRSMSAEEG-------ERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAI 243 (277)
T ss_pred HHH--HHHHHcCCCCCHHHH-------HHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHH
Confidence 776 999999999999999 7777775441 1 1122222 1 1245666655444333333
Q ss_pred -HHcCccccccCCchHHHHHHHHHHHH
Q psy12573 262 -YNAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 262 -~~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
.+......++.+ ++..+...+|.++
T Consensus 244 ~~e~~~~~~~~~s-~d~~eg~~af~ek 269 (277)
T PRK08258 244 EAEAQAQAICMQT-EDFRRAYEAFVAK 269 (277)
T ss_pred HHHHHHHHHHhcC-chHHHHHHHHhcC
Confidence 233344555666 6777777777654
No 183
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.07 E-value=8.4e-11 Score=101.57 Aligned_cols=148 Identities=22% Similarity=0.296 Sum_probs=102.8
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
.++..+..+++|+|++|||.+.|+|..++..||++++.+.++|+.|+.+ |+.+.++..+.. +..+ |+..+
T Consensus 84 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l----~~~v-----G~~~a 154 (256)
T TIGR02280 84 PLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSL----PRLV-----GRARA 154 (256)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHH----HHHh-----CHHHH
Confidence 4556778899999999999999999999999999999999999999999 988876655432 2222 88777
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH--HH
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDA--YN 263 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~~ 263 (315)
.+|+++++.+.+.++ .++|++.... . ..+.+.+ + ....|+++......+..++ .+
T Consensus 155 --~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e 225 (256)
T TIGR02280 155 --MGLAMLGEKLDARTA-------ASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLE 225 (256)
T ss_pred --HHHHHcCCCCCHHHH-------HHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 999999999999999 7778775441 1 1122222 1 1345666654433333333 22
Q ss_pred cCccccccCCchHHHHHHHHHHHH
Q psy12573 264 AGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 264 ~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
..+...++.+ ++..+...+|.++
T Consensus 226 ~~~~~~~~~~-~d~~eg~~af~~k 248 (256)
T TIGR02280 226 RDLQRELGRS-ADYAEGVTAFLDK 248 (256)
T ss_pred HHHHHHHhcC-hhHHHHHHHHHcC
Confidence 3344445556 6666666666554
No 184
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.07 E-value=1.2e-10 Score=100.79 Aligned_cols=94 Identities=21% Similarity=0.345 Sum_probs=78.9
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
+++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+. + |+..+
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----v-----G~~~a 159 (261)
T PRK08138 89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRA----V-----GKFKA 159 (261)
T ss_pred HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHH----h-----CHHHH
Confidence 4556778899999999999999999999999999999999999999999 998887765533222 2 77777
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+|+++++.+.+.++ .++|++...
T Consensus 160 --~~l~l~g~~~~a~eA-------~~~Glv~~v 183 (261)
T PRK08138 160 --MRMALTGCMVPAPEA-------LAIGLVSEV 183 (261)
T ss_pred --HHHHHcCCCCCHHHH-------HHCCCCcEe
Confidence 999999999999999 677777443
No 185
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.06 E-value=1.7e-09 Score=104.20 Aligned_cols=93 Identities=14% Similarity=-0.040 Sum_probs=78.5
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
+.+++++++++.|++.+|++.+++.| |.+..|..++ +..+.+...+.+..+++||+++|.++++++. ++.+||
T Consensus 373 ~~~i~~~~~~~~l~~~l~~~~iv~~~~g~~~~~~~~~-~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-----~~~~vv 446 (568)
T PRK07449 373 EDTFTEAKVAAALADLLPEGGQLFVGNSLPVRDVDAF-GQLPDGYPVYSNRGASGIDGLLSTAAGVARA-----SAKPTV 446 (568)
T ss_pred cCCccHHHHHHHHHHhCCCCCeEEEECcHHHHHHHHc-cCcCCCceEEecCCccchhhHHHHHHHHHhc-----CCCCEE
Confidence 46799999999999999999988888 6666666555 6666667777777778999999999999987 467899
Q ss_pred EEEcCCCccccchhhhHHhh
Q psy12573 85 CVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|||++++++.++.++.+
T Consensus 447 ~i~GDGsf~~~~~eL~Ta~r 466 (568)
T PRK07449 447 ALIGDLSFLHDLNGLLLLKQ 466 (568)
T ss_pred EEechHHhhcCcHHHHhhcc
Confidence 99999999999999988654
No 186
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.06 E-value=1.4e-10 Score=100.41 Aligned_cols=148 Identities=22% Similarity=0.327 Sum_probs=101.7
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
+++..+...|+|+|++|+|.+.|+|..+...||++++++.++|+.|+.+ ++.+.++..+...+ .+ |+..+
T Consensus 88 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~v-----G~~~a 158 (260)
T PRK05809 88 KVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLAR----IV-----GPGKA 158 (260)
T ss_pred HHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHH----Hh-----CHHHH
Confidence 4566788999999999999999999999999999999999999999999 99887776543322 22 77777
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhc------CHHHHHHHHhcCCCCCHHHHH--H
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKV------PLGVVRSMTITGIPISAQDAY--N 263 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~------g~~~a~~~~~~g~~~~a~~a~--~ 263 (315)
.+++++++.+.+.++ .++|++.... . . .+.+.+ .....|+++..+...+.+++. +
T Consensus 159 --~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e 229 (260)
T PRK05809 159 --KELIYTGDMINAEEA-------LRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIE 229 (260)
T ss_pred --HHHHHhCCCCCHHHH-------HHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999 7777775441 1 1 122211 112456666554433333332 2
Q ss_pred cCccccccCCchHHHHHHHHHHHH
Q psy12573 264 AGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 264 ~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
......++.+ ++..+...++.++
T Consensus 230 ~~~~~~~~~~-~~~~egi~af~~~ 252 (260)
T PRK05809 230 AEDFGECFST-EDQTEGMTAFVEK 252 (260)
T ss_pred HHHHHHHhcC-HHHHHHHHHHhcC
Confidence 2333444555 5666666665544
No 187
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=1.1e-10 Score=101.29 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=103.2
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
..++..+..+++|+|++|+|.++|+|..++..||++++++.++|+.|+.+ ++.+.++..+ .+. + + |...
T Consensus 90 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~-~~~---~-v-----G~~~ 159 (262)
T PRK07468 90 AMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPY-VVA---R-M-----GEAN 159 (262)
T ss_pred HHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhh-HHh---h-c-----cHHH
Confidence 34566788999999999999999999999999999999999999999999 9988776543 221 1 2 8877
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HH-------HHhhhc---CH---HHHHHHHhcCCCCCHHHH--H
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AV-------ALTRKV---PL---GVVRSMTITGIPISAQDA--Y 262 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~-------~l~~~~---g~---~~a~~~~~~g~~~~a~~a--~ 262 (315)
+ .+|+++++.+.+.++ ..+|++.... .. .+.+.+ .+ ...|+++........+++ .
T Consensus 160 a--~~lll~g~~~~a~eA-------~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~ 230 (262)
T PRK07468 160 A--RRVFMSARLFDAEEA-------VRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDA 230 (262)
T ss_pred H--HHHHHhCCccCHHHH-------HHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHH
Confidence 7 999999999999999 7788875441 11 122221 11 244666554433232332 3
Q ss_pred HcCccccccCCchHHHHHHHHHHHH
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+.......+.+ ++..+...+|.++
T Consensus 231 e~~~~~~~~~s-~d~~e~~~af~~k 254 (262)
T PRK07468 231 TIEALADTWET-EEAREGIAAFFDK 254 (262)
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHcC
Confidence 33445555666 6666666666554
No 188
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=1.1e-10 Score=101.51 Aligned_cols=149 Identities=18% Similarity=0.202 Sum_probs=104.8
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
+.++..+...++|+|+++||.+.|+|..+++.||++++++.++|+.|+.+ ++.+.++..+...+. + |+..
T Consensus 96 ~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----v-----G~~~ 166 (269)
T PRK06127 96 EAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDL----V-----GPSA 166 (269)
T ss_pred HHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHH----h-----CHHH
Confidence 34566788999999999999999999999999999999999999999999 988876655433222 2 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhc---C---HHHHHHHHhcCCCCCHHHH--H
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKV---P---LGVVRSMTITGIPISAQDA--Y 262 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~ 262 (315)
+ .+++++++.+.+.++ .++|++.... . . .+.+.+ + ....|+++......+.++. .
T Consensus 167 a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~ 237 (269)
T PRK06127 167 A--KDLFYTARRFDAAEA-------LRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAA 237 (269)
T ss_pred H--HHHHHcCCCCCHHHH-------HHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 6 999999999999999 7788875541 1 1 122221 1 1345666655443333332 3
Q ss_pred HcCccccccCCchHHHHHHHHHHHH
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+......++.+ ++..+...+|.++
T Consensus 238 e~~~~~~~~~~-~d~~e~~~af~ek 261 (269)
T PRK06127 238 CQALVAACFDS-EDYREGRAAFMEK 261 (269)
T ss_pred HHHHHHHHhcC-hHHHHHHHHHhcC
Confidence 33445555666 6677777666654
No 189
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=2.3e-10 Score=98.90 Aligned_cols=146 Identities=19% Similarity=0.313 Sum_probs=101.5
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
++++..+..+++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+......+. .-+ |+..
T Consensus 87 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~~l~-------~~~-----g~~~ 154 (257)
T PRK06495 87 RECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKHAM-------RLF-----GHSL 154 (257)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccHHHHH-------HHh-----CHHH
Confidence 34566788899999999999999999999999999999999999999999 8763221111 112 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV---P---LGVVRSMTITGIPISAQDAY-- 262 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~-- 262 (315)
+ .+|+++++.+.++++ .++|++.... . ..+.+.+ + ....|+++......+..++.
T Consensus 155 a--~~lll~g~~~~a~eA-------~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~ 225 (257)
T PRK06495 155 T--RRMMLTGYRVPAAEL-------YRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRY 225 (257)
T ss_pred H--HHHHHcCCeeCHHHH-------HHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7 999999999999999 6777774431 1 1122221 1 23557776665555555543
Q ss_pred HcCccccccCCchHHHHHHHHHHHH
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+..+....+.+ ++..+...+|.++
T Consensus 226 e~~~~~~~~~s-~d~~egi~af~~k 249 (257)
T PRK06495 226 EQDITAKLAKT-EDAKEAQRAFLEK 249 (257)
T ss_pred HHHHHHHHhcC-hHHHHHHHHHhcc
Confidence 22334445566 7777777777665
No 190
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=9.9e-11 Score=101.54 Aligned_cols=150 Identities=19% Similarity=0.206 Sum_probs=101.2
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+.+.+..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+.+ |+.
T Consensus 91 ~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~---------g~~ 161 (262)
T PRK07509 91 AQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV---------RKD 161 (262)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh---------CHH
Confidence 345566778899999999999999999999999999999999999999999 9988776554332222 777
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH--HH
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA------VALTRKV---P---LGVVRSMTITGIPISAQDA--YN 263 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~~ 263 (315)
.+ .+++++++.+.+.++ .++|++..... ..+.+.+ + ....|+++......+.+++ .+
T Consensus 162 ~a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e 232 (262)
T PRK07509 162 VA--RELTYTARVFSAEEA-------LELGLVTHVSDDPLAAALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARE 232 (262)
T ss_pred HH--HHHHHcCCCcCHHHH-------HHcCChhhhhchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 76 999999999999999 66777754421 1122221 1 1244555554433333332 22
Q ss_pred cCccccccCCchHHHHHHHHHHHH
Q psy12573 264 AGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 264 ~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
.-....++.+ ++..+...+|.++
T Consensus 233 ~~~~~~~~~~-~d~~e~~~af~ek 255 (262)
T PRK07509 233 SVEQIRLLLG-KNQKIAVKAQMKK 255 (262)
T ss_pred HHHHHHHhcC-hhHHHHHHHHhcC
Confidence 2233344455 5566666655544
No 191
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=1e-10 Score=101.25 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
.+++++..+...|+|+|++|+|.+.|+|..++..||++++.+.++|+.|+.+ ++.+..+..+.. ++-+ |+
T Consensus 86 ~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L----~~~v-----g~ 156 (260)
T PRK07659 86 TISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFL----QKRV-----GE 156 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhH----HHhc-----CH
Confidence 3456677888999999999999999999999999999999999999999999 998876654432 2222 88
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
..+ .+++++++.+.+.++ .++|++...
T Consensus 157 ~~a--~~l~ltg~~~~a~eA-------~~~Glv~~v 183 (260)
T PRK07659 157 NKA--KQIIWEGKKLSATEA-------LDLGLIDEV 183 (260)
T ss_pred HHH--HHHHHhCCccCHHHH-------HHcCChHHH
Confidence 877 999999999999999 777777543
No 192
>PRK08266 hypothetical protein; Provisional
Probab=99.05 E-value=2.7e-09 Score=102.19 Aligned_cols=92 Identities=29% Similarity=0.394 Sum_probs=78.9
Q ss_pred CCCHHH-HHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 8 PLNYYA-AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 8 ~~~~~~-~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
.++|+. +++.|++.+|+|.+++.| |++..|.... +..+.++.++++..+++|||++|.+++.++.. |+.++|+
T Consensus 351 ~~~~~~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~----p~~~vv~ 425 (542)
T PRK08266 351 AVQPQASYLRAIREALPDDGIFVDELSQVGFASWFA-FPVYAPRTFVTCGYQGTLGYGFPTALGAKVAN----PDRPVVS 425 (542)
T ss_pred cCCHHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHh-cccCCCCcEEeCCCCcccccHHHHHHHHHHhC----CCCcEEE
Confidence 467764 799999999999999999 6666666655 77778888898888899999999999999985 7889999
Q ss_pred EEcCCCccccchhhhHHhh
Q psy12573 86 VQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 86 l~g~g~~~~aG~Dl~~~~~ 104 (315)
++|||++++++++|.+..+
T Consensus 426 v~GDG~f~~~~~eL~ta~~ 444 (542)
T PRK08266 426 ITGDGGFMFGVQELATAVQ 444 (542)
T ss_pred EEcchhhhccHHHHHHHHH
Confidence 9999999999999988765
No 193
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.05 E-value=9.7e-11 Score=101.66 Aligned_cols=149 Identities=27% Similarity=0.448 Sum_probs=104.4
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+.+++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.... +.. +.-+ |..
T Consensus 93 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~-~~l----~r~v-----G~~ 162 (266)
T PRK08139 93 CSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPM-VAL----SRNV-----PRK 162 (266)
T ss_pred HHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccH-HHH----HHHh-----CHH
Confidence 445677888999999999999999999999999999999999999999999 88775532 221 2222 887
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHH-
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDAY- 262 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~- 262 (315)
.+ .+++++++.+.+.++ .++|++.... . ..+.+.+ . ....|+++..+...+.++++
T Consensus 163 ~A--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~ 233 (266)
T PRK08139 163 QA--MEMLLTGEFIDAATA-------REWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYA 233 (266)
T ss_pred HH--HHHHHcCCccCHHHH-------HHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 77 999999999999999 7788875441 1 1122222 1 13556666655544444442
Q ss_pred -HcCccccccCCchHHHHHHHHHHHH
Q psy12573 263 -NAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 263 -~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+.......+.+ ++..+...+|.++
T Consensus 234 ~e~~~~~~~~~~-~d~~eg~~af~~k 258 (266)
T PRK08139 234 YAGDVMAENMMA-EDAEEGIDAFLEK 258 (266)
T ss_pred HHHHHHHHHhcC-chHHHHHHHHhcC
Confidence 22333445556 6667777777654
No 194
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.05 E-value=1.2e-10 Score=100.57 Aligned_cols=147 Identities=21% Similarity=0.330 Sum_probs=102.4
Q ss_pred HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAA 200 (315)
Q Consensus 122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~ 200 (315)
++..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+. + |+..+
T Consensus 84 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----i-----g~~~a- 153 (255)
T PRK09674 84 LWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRS----V-----GKSLA- 153 (255)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHH----h-----CHHHH-
Confidence 445678899999999999999999999999999999999999999999 998887765543322 2 77777
Q ss_pred hhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--Hc
Q psy12573 201 GCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDAY--NA 264 (315)
Q Consensus 201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~ 264 (315)
.+++++++.+.+.++ .++|++.... . ..+.+.+ + ....|+++..+...+.++++ +.
T Consensus 154 -~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~ 225 (255)
T PRK09674 154 -SQMVLTGESITAQQA-------QQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQER 225 (255)
T ss_pred -HHHHHcCCccCHHHH-------HHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999999999999999 7777775441 1 1122221 1 12456666554444444432 22
Q ss_pred CccccccCCchHHHHHHHHHHHH
Q psy12573 265 GLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 265 Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
.....++.+ ++..+...+|.++
T Consensus 226 ~~~~~~~~~-~~~~e~i~af~~k 247 (255)
T PRK09674 226 QLFTLLAAT-EDRHEGISAFLEK 247 (255)
T ss_pred HHHHHHhcC-HHHHHHHHHHhcc
Confidence 333445556 6666666666554
No 195
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=9.7e-11 Score=101.59 Aligned_cols=144 Identities=18% Similarity=0.254 Sum_probs=101.2
Q ss_pred HHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhH
Q psy12573 125 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQ 203 (315)
Q Consensus 125 ~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~ 203 (315)
.+..+++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+. + |+..+ .+
T Consensus 95 ~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~----v-----G~~~a--~~ 163 (263)
T PRK07799 95 KGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQ----I-----PYTVA--CD 163 (263)
T ss_pred HHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHH----h-----CHHHH--HH
Confidence 457789999999999999999999999999999999999999999 998877655433222 2 77777 99
Q ss_pred HHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--HcCcc
Q psy12573 204 LVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY--NAGLI 267 (315)
Q Consensus 204 l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~Glv 267 (315)
|+++++.+.+.++ .++|++.... ...+.+.+ + ....|+++..+...+.+++. +....
T Consensus 164 l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~ 236 (263)
T PRK07799 164 LLLTGRHITAAEA-------KEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIG 236 (263)
T ss_pred HHHcCCCCCHHHH-------HHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 9999999999999 6777764431 01122211 1 13556666655444444442 22344
Q ss_pred ccccCCchHHHHHHHHHHHH
Q psy12573 268 TRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 268 ~~v~~~~~~~~~~~~~~~~~ 287 (315)
..++.+ ++..+...+|.++
T Consensus 237 ~~~~~~-~~~~egi~af~~~ 255 (263)
T PRK07799 237 IPVFLS-EDAKEGPRAFAEK 255 (263)
T ss_pred HHHhcC-ccHHHHHHHHHcc
Confidence 455566 6677777777654
No 196
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.04 E-value=2.1e-09 Score=87.69 Aligned_cols=80 Identities=30% Similarity=0.440 Sum_probs=64.2
Q ss_pred HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q psy12573 12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 90 (315)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g 90 (315)
.-++..|++.+++|.|++.| |.+..|..+ +..+++ .+++||+++|.+++.++.. ++.+||+|+|||
T Consensus 13 ~~~~~~l~~~l~~~~iv~~D~G~~~~~~~~-------~~~~~~--~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG 79 (178)
T cd02008 13 RPSFYALRKAFKKDSIVSGDIGCYTLGALP-------PLNAID--TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDS 79 (178)
T ss_pred hHHHHHHHHHhcCCeEEecCcCcccccccC-------Chhhcc--ccccCccHHHHHhhHHhhC----CCCCEEEEecCh
Confidence 45788999999999999999 877666531 222333 4799999999999999985 788999999999
Q ss_pred Cccccc-hhhhHHhh
Q psy12573 91 AFGFSG-MELETLAV 104 (315)
Q Consensus 91 ~~~~aG-~Dl~~~~~ 104 (315)
++++.| .+|.+..+
T Consensus 80 ~f~~~g~~eL~ta~~ 94 (178)
T cd02008 80 TFFHSGILGLINAVY 94 (178)
T ss_pred HHhhccHHHHHHHHH
Confidence 988885 77777543
No 197
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.04 E-value=1.2e-10 Score=100.96 Aligned_cols=146 Identities=19% Similarity=0.269 Sum_probs=104.9
Q ss_pred HHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhh
Q psy12573 123 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAG 201 (315)
Q Consensus 123 ~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G 201 (315)
+..+..+++|+|++|+|.++|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+.+ |+..+
T Consensus 87 ~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~v---------g~~~a-- 155 (261)
T PRK03580 87 LTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRL---------PPAIA-- 155 (261)
T ss_pred HHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHh---------CHHHH--
Confidence 34567899999999999999999999999999999999999999999 9988776554332222 77776
Q ss_pred hHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHHHc---
Q psy12573 202 CQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAYNA--- 264 (315)
Q Consensus 202 ~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~~--- 264 (315)
.+++++++.+.+.++ .++|++.... ...+.+.+ + ....|+++......+.+++.+.
T Consensus 156 ~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~ 228 (261)
T PRK03580 156 NEMVMTGRRMDAEEA-------LRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRS 228 (261)
T ss_pred HHHHHhCCccCHHHH-------HHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 999999999999999 7778775431 11122222 1 1355777765555555555333
Q ss_pred ---CccccccCCchHHHHHHHHHHHH
Q psy12573 265 ---GLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 265 ---Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
.+...++.+ ++..+...+|.++
T Consensus 229 ~~~~~~~~~~~~-~d~~e~~~af~ek 253 (261)
T PRK03580 229 GVLKHYPSVLHS-EDALEGPRAFAEK 253 (261)
T ss_pred hhHHHHHHHhcC-ccHHHHHHHHhcC
Confidence 133456666 7777777777765
No 198
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.04 E-value=5.3e-09 Score=87.81 Aligned_cols=94 Identities=23% Similarity=0.330 Sum_probs=63.7
Q ss_pred HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCc------------cCCCCCCc---h------------
Q psy12573 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGA------------RHGIFCST---P------------ 233 (315)
Q Consensus 181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~------------~~Gl~~~~---~------------ 233 (315)
.+.. +|||||.++|.+.++|+.++++||.+++.+.+.|+...+ ++|+-+.. +
T Consensus 69 ~~~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~ 147 (214)
T cd07022 69 AARA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPL 147 (214)
T ss_pred HHhc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCC
Confidence 3344 699999999999999999999999999999998754221 23332111 0
Q ss_pred --HH--HHh-----------------hhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHH
Q psy12573 234 --AV--ALT-----------------RKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278 (315)
Q Consensus 234 --~~--~l~-----------------~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~ 278 (315)
.. .+. |.+.....++++ |..+++++|++.||||++-.. +++.
T Consensus 148 s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~-~~~~ 210 (214)
T cd07022 148 SDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTL-DDAL 210 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCH-HHHH
Confidence 00 000 111222334444 889999999999999999765 5544
No 199
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.04 E-value=1.7e-10 Score=100.08 Aligned_cols=149 Identities=20% Similarity=0.307 Sum_probs=102.8
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
..++..+..+++|+|++|||.+.|+|..++..||++++++.++|..|+.+ |+.+..+..+.. +..+ |+..
T Consensus 89 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l----~~~v-----G~~~ 159 (262)
T PRK08140 89 NPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFL----PRLV-----GMAR 159 (262)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHH----HHHh-----CHHH
Confidence 34567788999999999999999999999999999999999999999999 988876655422 2222 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH--H
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDA--Y 262 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~ 262 (315)
+ .+|+++++.+.+.++ .++|++.... . ..+.+.+ + ....|+++......+..++ .
T Consensus 160 a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~ 230 (262)
T PRK08140 160 A--LGLALLGEKLSAEQA-------EQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAMNASATNTLDAQLDL 230 (262)
T ss_pred H--HHHHHcCCCcCHHHH-------HHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHH
Confidence 7 999999999999999 7778774441 1 1122222 1 1245565554333333333 2
Q ss_pred HcCccccccCCchHHHHHHHHHHHH
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+..+...++.+ ++..+...+|.++
T Consensus 231 e~~~~~~~~~~-~~~~e~~~af~~k 254 (262)
T PRK08140 231 ERDLQREAGRS-ADYAEGVSAFLEK 254 (262)
T ss_pred HHHHHHHHhcC-hhHHHHHHHHhcC
Confidence 33344455556 6666666666554
No 200
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.04 E-value=1.5e-10 Score=100.53 Aligned_cols=96 Identities=29% Similarity=0.451 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+..++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+.. +..+ |+.
T Consensus 92 ~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l----~~~v-----G~~ 162 (266)
T PRK09245 92 IQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLL----PRII-----GMA 162 (266)
T ss_pred HHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhH----HHHh-----hHH
Confidence 345566788899999999999999999999999999999999999999999 998877655422 2222 777
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+ .+|+++++.+.+.++ ..+|++...
T Consensus 163 ~a--~~l~l~g~~~~a~eA-------~~~Glv~~v 188 (266)
T PRK09245 163 RA--AEMAFTGDAIDAATA-------LEWGLVSRV 188 (266)
T ss_pred HH--HHHHHcCCCcCHHHH-------HHcCCccee
Confidence 77 999999999999999 777887544
No 201
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.03 E-value=3.3e-11 Score=103.54 Aligned_cols=152 Identities=19% Similarity=0.293 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
..++.++..+...|+|+|++++|.+.|+|..++..||++++.+.++|+.|+.+ |++|..+......+.+ |
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~---------g 147 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLI---------G 147 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHH---------H
T ss_pred hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceee---------e
Confidence 34567888899999999999999999999999999999999999999999999 9988665554332222 6
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhc------CHHHHHHHHhcCCCCCHHHH
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKV------PLGVVRSMTITGIPISAQDA 261 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~------g~~~a~~~~~~g~~~~a~~a 261 (315)
+..+ .+++++++.+.+.++ .++|++.... . . .+.+.+ .....|+.+.........++
T Consensus 148 ~~~a--~~l~l~g~~~~a~eA-------~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~ 218 (245)
T PF00378_consen 148 PSRA--RELLLTGEPISAEEA-------LELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKALNRALEQSLEEA 218 (245)
T ss_dssp HHHH--HHHHHHTCEEEHHHH-------HHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cccc--cccccccccchhHHH-------HhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 6666 899999999999999 8888885541 1 1 111111 11244444443322222222
Q ss_pred --HHcCccccccCCchHHHHHHHHHHHH
Q psy12573 262 --YNAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 262 --~~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
.+..+..+++.+ ++..+...+|.+|
T Consensus 219 ~~~~~~~~~~~~~~-~~~~e~~~~f~eK 245 (245)
T PF00378_consen 219 LEFEQDLFAECFKS-EDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHhCc
Confidence 333455556666 6777777666654
No 202
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.03 E-value=2.2e-10 Score=99.21 Aligned_cols=95 Identities=27% Similarity=0.364 Sum_probs=79.2
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
++++..+...|+|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++...+..+ -+ |+..
T Consensus 86 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~----~~-----G~~~ 156 (259)
T PRK06688 86 NRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPR----LI-----GRAR 156 (259)
T ss_pred HHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHH----Hh-----hHHH
Confidence 45666788999999999999999999999999999999999999999999 99887765443221 12 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+ .+++++++.+.+.++ .++|++...
T Consensus 157 a--~~l~l~g~~~~a~eA-------~~~Glv~~v 181 (259)
T PRK06688 157 A--AEMLLLGEPLSAEEA-------LRIGLVNRV 181 (259)
T ss_pred H--HHHHHhCCccCHHHH-------HHcCCccee
Confidence 6 999999999999999 777777544
No 203
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.03 E-value=1.4e-10 Score=100.30 Aligned_cols=94 Identities=23% Similarity=0.313 Sum_probs=78.4
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
.++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+...... .-+ |+..+
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~----~~v-----G~~~a 158 (259)
T TIGR01929 88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLA----RIV-----GQKKA 158 (259)
T ss_pred HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHH----HHh-----HHHHH
Confidence 3455678899999999999999999999999999999999999999999 9887655443222 122 87777
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+++++++.+.+.++ .++|++...
T Consensus 159 --~~l~l~g~~~~a~eA-------~~~Glv~~v 182 (259)
T TIGR01929 159 --REIWFLCRQYDAEQA-------LDMGLVNTV 182 (259)
T ss_pred --HHHHHhCCccCHHHH-------HHcCCcccc
Confidence 999999999999999 788888654
No 204
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.02 E-value=2.1e-09 Score=102.67 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=79.5
Q ss_pred HHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCcee------eCCC------ccCCCCCCch-HHH--------
Q psy12573 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF------STPG------ARHGIFCSTP-AVA-------- 236 (315)
Q Consensus 178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~------~~pe------~~~Gl~~~~~-~~~-------- 236 (315)
.+..+...+||||+.+.|.|.+||..++++||.+++++.+.+ +.+. .++|+.++.. ...
T Consensus 370 ~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~ 449 (584)
T TIGR00705 370 ELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLR 449 (584)
T ss_pred HHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCC
Confidence 334456778999999999999999999999999999999877 4442 4677775431 111
Q ss_pred --------------------HhhhcCHHH-----HHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573 237 --------------------LTRKVPLGV-----VRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291 (315)
Q Consensus 237 --------------------l~~~~g~~~-----a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~ 291 (315)
+...++..+ ..+.+.+|+.+++++|+++|||+++-.- +.+.+.+++++..
T Consensus 450 ~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~-----~~Ai~~a~~la~~ 524 (584)
T TIGR00705 450 PLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGL-----DEAVAKAAKLAHC 524 (584)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCH-----HHHHHHHHHHcCC
Confidence 112333333 5677889999999999999999999433 4455556666665
No 205
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.02 E-value=1.4e-10 Score=100.37 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=101.6
Q ss_pred HHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHH
Q psy12573 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQL 204 (315)
Q Consensus 126 ~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l 204 (315)
+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+..+...+ .+ |+..+ .++
T Consensus 90 ~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~v-----g~~~a--~~l 158 (259)
T PRK06494 90 RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPR----QI-----GLKRA--MGM 158 (259)
T ss_pred HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHH----Hc-----CHHHH--HHH
Confidence 34789999999999999999999999999999999999999999 99888776553322 22 77777 899
Q ss_pred HhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHHHcC----c
Q psy12573 205 VATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV---P---LGVVRSMTITGIPISAQDAYNAG----L 266 (315)
Q Consensus 205 ~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~~G----l 266 (315)
+++++.+.+.++ .++|++.... . ..+.+.+ + ....|+++......+.+++++.- .
T Consensus 159 ll~g~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~ 231 (259)
T PRK06494 159 ILTGRRVTAREG-------LELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPA 231 (259)
T ss_pred HHcCCcCCHHHH-------HHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 999999999999 7777775441 1 1122222 1 13556666655555555554332 2
Q ss_pred cccccCCchHHHHHHHHHHHH
Q psy12573 267 ITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 267 v~~v~~~~~~~~~~~~~~~~~ 287 (315)
...++.+ ++..+...+|.++
T Consensus 232 ~~~~~~~-~d~~eg~~af~~k 251 (259)
T PRK06494 232 VEARRAS-QDYIEGPKAFAEK 251 (259)
T ss_pred HHHHhcC-ccHHHHHHHHHcc
Confidence 3445566 6777777777654
No 206
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.02 E-value=1.6e-10 Score=99.82 Aligned_cols=144 Identities=14% Similarity=0.172 Sum_probs=100.6
Q ss_pred HHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhH
Q psy12573 125 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQ 203 (315)
Q Consensus 125 ~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~ 203 (315)
.+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..++..+ .+ |+..+ .+
T Consensus 87 ~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~v-----G~~~a--~~ 155 (255)
T PRK06563 87 VGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQ----AA-----GWGNA--MR 155 (255)
T ss_pred HHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHH----Hh-----hHHHH--HH
Confidence 467789999999999999999999999999999999999999999 99887765543322 22 77777 89
Q ss_pred HHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHHHc--Ccc
Q psy12573 204 LVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDAYNA--GLI 267 (315)
Q Consensus 204 l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~~--Glv 267 (315)
++++++.+.+.++ .++|++.... . ..+.+.+ + ....|+++......+..++.+. -+.
T Consensus 156 l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~ 228 (255)
T PRK06563 156 YLLTGDEFDAQEA-------LRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPEL 228 (255)
T ss_pred HHHcCCCcCHHHH-------HHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 9999999999999 7778775441 1 1122222 1 1345666655444444444322 234
Q ss_pred ccccCCchHHHHHHHHHHHH
Q psy12573 268 TRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 268 ~~v~~~~~~~~~~~~~~~~~ 287 (315)
..++.+ ++..+...+|.++
T Consensus 229 ~~~~~~-~d~~eg~~af~~k 247 (255)
T PRK06563 229 RPLFTS-EDAKEGVQAFLER 247 (255)
T ss_pred HHHhcC-chHHHHHHHHhcC
Confidence 445556 6666666666654
No 207
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.02 E-value=4.4e-09 Score=87.96 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=38.3
Q ss_pred HHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeC
Q psy12573 179 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST 221 (315)
Q Consensus 179 ~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~ 221 (315)
+..+..++||+|+.++|.|.++|..++++||.+++++.+.|+.
T Consensus 59 i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~ 101 (208)
T cd07023 59 IRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGS 101 (208)
T ss_pred HHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence 3456677999999999999999999999999999999988854
No 208
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.02 E-value=5.5e-09 Score=100.46 Aligned_cols=91 Identities=25% Similarity=0.214 Sum_probs=77.5
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
+.+++|+++++.|++.++++.+++.+. .|..+. +..+++..++++..+++||+++|.+++.++.. |+.++|+
T Consensus 382 ~~~i~~~~~~~~l~~~l~~~~~vv~~~---~~~~~~-~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~----p~~~vv~ 453 (569)
T PRK08327 382 RGPITPAYLSYCLGEVADEYDAIVTEY---PFVPRQ-ARLNKPGSYFGDGSAGGLGWALGAALGAKLAT----PDRLVIA 453 (569)
T ss_pred CCCcCHHHHHHHHHHhcCccceEEecc---HHHHHh-cCccCCCCeeeCCCCCCCCcchHHHHHHhhcC----CCCeEEE
Confidence 468999999999999999988888663 356666 78888999999998999999999999999874 8899999
Q ss_pred EEcCCCccccchh--hhHHhh
Q psy12573 86 VQGDSAFGFSGME--LETLAV 104 (315)
Q Consensus 86 l~g~g~~~~aG~D--l~~~~~ 104 (315)
|+|||++++++.+ +.+..+
T Consensus 454 i~GDG~f~~~~~e~~l~ta~~ 474 (569)
T PRK08327 454 TVGDGSFIFGVPEAAHWVAER 474 (569)
T ss_pred EecCcceeecCcHHHHHHHHH
Confidence 9999999998766 455543
No 209
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=2e-10 Score=99.81 Aligned_cols=96 Identities=22% Similarity=0.233 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+++++..+..+|+|+|++|+|.+.|+|..+++.||++++.+.++|..|+.+ |+.+.++..+.... .+ |+.
T Consensus 92 ~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~----~v-----g~~ 162 (266)
T PRK05981 92 YHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPR----LV-----GKA 162 (266)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHH----Hh-----HHH
Confidence 455677888999999999999999999999999999999999999999999 99887766543322 12 777
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+ .+++++++.+.+.++ .++|++...
T Consensus 163 ~a--~~l~l~g~~~~a~eA-------~~~Glv~~v 188 (266)
T PRK05981 163 RA--MELSLLGEKLPAETA-------LQWGLVNRV 188 (266)
T ss_pred HH--HHHHHhCCCcCHHHH-------HHcCCceEe
Confidence 66 999999999999999 777777443
No 210
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=1e-10 Score=100.66 Aligned_cols=94 Identities=23% Similarity=0.226 Sum_probs=77.5
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
+.+..+...|+|+|+++||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+. ++ ..-|+..+
T Consensus 86 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~----l~-----~~~G~~~a 156 (249)
T PRK05870 86 DGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWM----LQ-----RAVGPQVA 156 (249)
T ss_pred HHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceee----HH-----hhhCHHHH
Confidence 3455678899999999999999999999999999999999999999999 98887654431 12 22288777
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+++++++.+.+.++ .++|++...
T Consensus 157 --~~l~ltg~~~~a~eA-------~~~Glv~~v 180 (249)
T PRK05870 157 --RAALLFGMRFDAEAA-------VRHGLALMV 180 (249)
T ss_pred --HHHHHhCCccCHHHH-------HHcCCHHHH
Confidence 999999999999999 777777443
No 211
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.01 E-value=3e-10 Score=97.68 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
.+++..+..+|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+... .. .++..+ |+..
T Consensus 79 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~-~~----~l~~~v-----g~~~ 148 (251)
T TIGR03189 79 HKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAA-SC----LLPERM-----GRVA 148 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCch-HH----HHHHHh-----CHHH
Confidence 34566788899999999999999999999999999999999999999999 8876532 22 122223 8777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch------HHH-Hhhhc---C---HHHHHHHHhcCCCCCHHHH---H
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP------AVA-LTRKV---P---LGVVRSMTITGIPISAQDA---Y 262 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~------~~~-l~~~~---g---~~~a~~~~~~g~~~~a~~a---~ 262 (315)
+ .+|+++++.+.+.++ ..+|++.... ... +.+.+ + ...+|+++......+.+++ .
T Consensus 149 a--~~l~ltg~~~~a~eA-------~~~Glv~~v~~~~~~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~ 219 (251)
T TIGR03189 149 A--EDLLYSGRSIDGAEG-------ARIGLANAVAEDPENAALAWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEV 219 (251)
T ss_pred H--HHHHHcCCCCCHHHH-------HHCCCcceecCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 7 999999999999999 6666664331 111 12221 1 1245666655443333332 2
Q ss_pred HcCccccccCCchHHHHHHHHHHHH
Q psy12573 263 NAGLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 263 ~~Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
+......++.+ ++..+...+|.++
T Consensus 220 e~~~~~~~~~s-~d~~eg~~af~ek 243 (251)
T TIGR03189 220 EALYLEELMAT-HDAVEGLNAFLEK 243 (251)
T ss_pred HHHHHHHHhCC-HhHHHHHHHHHhc
Confidence 22333445556 6677777766654
No 212
>PRK07064 hypothetical protein; Provisional
Probab=99.01 E-value=3.3e-09 Score=101.67 Aligned_cols=166 Identities=22% Similarity=0.258 Sum_probs=107.2
Q ss_pred CCCHH-HHHHHHHhhCCCCceEEeC-CC-hhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573 8 PLNYY-AAIHAVQVSIPDNCIIVGE-GA-NTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV 84 (315)
Q Consensus 8 ~~~~~-~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv 84 (315)
++.++ .+++.|++.+|++.+++.| |. +..|..+. +..+.|+..+++.. ++|||++|.+++.+++. ++.+||
T Consensus 354 ~~~~~~~~~~~l~~~l~~~~ii~~d~~~~~~~~~~~~-~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~----p~~~vv 427 (544)
T PRK07064 354 GLGPYAKLVDALRAALPRDGNWVRDVTISNSTWGNRL-LPIFEPRANVHALG-GGIGQGLAMAIGAALAG----PGRKTV 427 (544)
T ss_pred ccCcHHHHHHHHHHhCCCCCEEEeCCccchHHHHHHh-cCccCCCceeccCC-CccccccchhhhhhhhC----cCCcEE
Confidence 45554 6999999999999999999 64 46777766 77777777777655 89999999999999985 788999
Q ss_pred EEEcCCCccccchhhhHHhhhccCchhHHHHHH-HHHHHHHHHHc--CCCcEEEEEeeEEecccchhccccChhhhhhhc
Q psy12573 85 CVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS-TCSDLMLSILR--HPVPILAIISGVAAAAGCQLVATCDLAIATTAS 161 (315)
Q Consensus 85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~ 161 (315)
+|+|||++++++++|.+..+... +-.-..+| .-+..+..... ..... .+..+ ...|+..+++.
T Consensus 428 ~i~GDGsf~m~~~eL~Ta~~~~l--pv~ivV~NN~~yg~~~~~~~~~~~~~~----------~~~~~-~~~d~~~lA~a- 493 (544)
T PRK07064 428 GLVGDGGLMLNLGELATAVQENA--NMVIVLMNDGGYGVIRNIQDAQYGGRR----------YYVEL-HTPDFALLAAS- 493 (544)
T ss_pred EEEcchHhhhhHHHHHHHHHhCC--CeEEEEEeCChhHHHHHHHHHhcCCcc----------ccccC-CCCCHHHHHHH-
Confidence 99999999999999998865221 10000000 00000110000 00000 01112 13678777776
Q ss_pred CCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573 162 KFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS 194 (315)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~ 194 (315)
|+....+ ....++...+......++|++..|.
T Consensus 494 -~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~ 526 (544)
T PRK07064 494 -LGLPHWRVTSADDFEAVLREALAKEGPVLVEVD 526 (544)
T ss_pred -CCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence 5555544 5555666666666667778765543
No 213
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=98.99 E-value=6.1e-09 Score=84.87 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=64.4
Q ss_pred HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q psy12573 12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS 90 (315)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g 90 (315)
+.+++.|++.+| |.++++| |++..+...+ +..+.+.+. +++||+++|.+++.+++. + .++|+++|||
T Consensus 2 ~~~~~~l~~~~~-~~~vv~d~G~~~~~~~~~---~~~~~~~~~---~g~mG~~lp~AiGaala~----~-~~vv~i~GDG 69 (179)
T cd03372 2 RDAIKTLIADLK-DELVVSNIGFPSKELYAA---GDRPLNFYM---LGSMGLASSIGLGLALAQ----P-RKVIVIDGDG 69 (179)
T ss_pred HHHHHHHHHhCC-CCeEEeCCCHhHHHHHHc---cCccccccc---ccchhhHHHHHHHHHhcC----C-CcEEEEECCc
Confidence 568899999999 9999999 7765554332 334566663 699999999999999984 4 7899999999
Q ss_pred CccccchhhhHHhh
Q psy12573 91 AFGFSGMELETLAV 104 (315)
Q Consensus 91 ~~~~aG~Dl~~~~~ 104 (315)
.++++.+++.++.+
T Consensus 70 ~f~m~~~el~ta~~ 83 (179)
T cd03372 70 SLLMNLGALATIAA 83 (179)
T ss_pred HHHhCHHHHHHHHH
Confidence 98888888777654
No 214
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.99 E-value=5.1e-10 Score=96.79 Aligned_cols=99 Identities=25% Similarity=0.340 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
.+...+.++..+.+.+||+|++++|+++|+|.+++..||++++++.++|+.|+.+ |++|..+......+ -
T Consensus 83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r----~----- 153 (257)
T COG1024 83 LMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPR----L----- 153 (257)
T ss_pred HHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHH----h-----
Confidence 3445567888999999999999999999999999999999999999999999999 99996554443322 2
Q ss_pred ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCC
Q psy12573 194 SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCS 231 (315)
Q Consensus 194 ~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~ 231 (315)
.|+..+ .+|+++++.+.+.++ .++|++..
T Consensus 154 ~G~~~a--~~l~ltg~~~~a~eA-------~~~Glv~~ 182 (257)
T COG1024 154 LGRGRA--KELLLTGEPISAAEA-------LELGLVDE 182 (257)
T ss_pred cCHHHH--HHHHHcCCcCCHHHH-------HHcCCcCe
Confidence 277777 999999999999999 77777755
No 215
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.99 E-value=3.5e-10 Score=98.10 Aligned_cols=94 Identities=29% Similarity=0.387 Sum_probs=78.7
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
.+++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+ . +..+ |+..
T Consensus 89 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l----~~~v-----g~~~ 158 (262)
T PRK05995 89 ADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-V----IRAM-----GERA 158 (262)
T ss_pred HHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-H----HHHh-----CHHH
Confidence 45667788999999999999999999999999999999999999999999 9888765432 2 1122 8888
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+ .+|+++++.+.+.++ .++|++...
T Consensus 159 a--~~l~l~g~~~~a~eA-------~~~Glv~~v 183 (262)
T PRK05995 159 A--RRYFLTAERFDAAEA-------LRLGLVHEV 183 (262)
T ss_pred H--HHHHHcCCccCHHHH-------HHcCCCCee
Confidence 7 999999999999999 777877554
No 216
>KOG1679|consensus
Probab=98.99 E-value=1.2e-10 Score=93.43 Aligned_cols=100 Identities=26% Similarity=0.413 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
+.+.++.++..+.+.|.|+|++|.|.+.|+|.++...||+++++++++++..+.+ .++|..++.. ++|..+
T Consensus 109 fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQ----RLpR~v---- 180 (291)
T KOG1679|consen 109 FVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQ----RLPRIV---- 180 (291)
T ss_pred HHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccc----hhHHHH----
Confidence 4456778888899999999999999999999999999999999999999999999 9999887764 344444
Q ss_pred ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 194 SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 194 ~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
|.+.+ .+|.+++....+.|+ ..+|++.++
T Consensus 181 -g~ala--KELIftarvl~g~eA-------~~lGlVnhv 209 (291)
T KOG1679|consen 181 -GVALA--KELIFTARVLNGAEA-------AKLGLVNHV 209 (291)
T ss_pred -hHHHH--HhHhhhheeccchhH-------HhcchHHHH
Confidence 88888 999999999999999 777877443
No 217
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.99 E-value=2.6e-10 Score=98.48 Aligned_cols=148 Identities=18% Similarity=0.220 Sum_probs=99.0
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
.++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+.....+. ++..+ |+..+
T Consensus 85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~----l~~~v-----G~~~A 155 (256)
T TIGR03210 85 ELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTAL----LARVV-----GEKKA 155 (256)
T ss_pred HHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHH----HHHHh-----CHHHH
Confidence 4556778899999999999999999999999999999999999999999 87644333322 22222 88777
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCC-HHHHHHc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPIS-AQDAYNA 264 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~-a~~a~~~ 264 (315)
.+++++++.+.+.++ .++|++.... . ..+.+.+ + ....|+++....... ..+..+.
T Consensus 156 --~~lll~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~ 226 (256)
T TIGR03210 156 --REIWYLCRRYTAQEA-------LAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAGMGM 226 (256)
T ss_pred --HHHHHhCCCcCHHHH-------HHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 999999999999999 7778875541 1 1122221 1 134566665442221 1122222
Q ss_pred CccccccCCchHHHHHHHHHHHH
Q psy12573 265 GLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 265 Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
......+.+ ++..+...+|.++
T Consensus 227 ~~~~~~~~~-~d~~e~~~af~~k 248 (256)
T TIGR03210 227 YALKLYYDT-AESREGVKAFQEK 248 (256)
T ss_pred HHHHHHccC-hhHHHHHHHHhcc
Confidence 233344556 6666676666654
No 218
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.99 E-value=5.3e-10 Score=97.21 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
.+++..+..+++|+|++|||.+.|+|..++..||++++++.++|..|+.+ |+.+..+..+.. |..+ |+..
T Consensus 96 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l----~~~v-----G~~~ 166 (268)
T PRK07327 96 RDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVW----PLLC-----GMAK 166 (268)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHH----HHHh-----CHHH
Confidence 45567788899999999999999999999999999999999999999999 998876654432 2222 8777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+ .+++++++.+.+.++ .++|++...
T Consensus 167 a--~~l~ltg~~~~a~eA-------~~~Glv~~v 191 (268)
T PRK07327 167 A--KYYLLLCEPVSGEEA-------ERIGLVSLA 191 (268)
T ss_pred H--HHHHHcCCccCHHHH-------HHcCCccee
Confidence 7 999999999999999 777777544
No 219
>PLN02888 enoyl-CoA hydratase
Probab=98.99 E-value=2.8e-10 Score=98.64 Aligned_cols=149 Identities=17% Similarity=0.181 Sum_probs=100.5
Q ss_pred HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAA 200 (315)
Q Consensus 122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~ 200 (315)
.+..+..+++|+|++|||.+.|+|..++..||++++.+.++|..|+.+ |+.+.++......+ -+ |+..+
T Consensus 91 ~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~v-----G~~~a- 160 (265)
T PLN02888 91 PVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSR----II-----GANRA- 160 (265)
T ss_pred HHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHH----Hh-----CHHHH-
Confidence 344577899999999999999999999999999999999999999999 99887665443222 12 77777
Q ss_pred hhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhcC------HHHHHHHHhcCCCCCHHHHHHc--
Q psy12573 201 GCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKVP------LGVVRSMTITGIPISAQDAYNA-- 264 (315)
Q Consensus 201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~g------~~~a~~~~~~g~~~~a~~a~~~-- 264 (315)
.+++++++.+.+.++ .++|++.... . ..+.+.+. ....|+++......+.+++.+.
T Consensus 161 -~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~ 232 (265)
T PLN02888 161 -REVSLTAMPLTAETA-------ERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEK 232 (265)
T ss_pred -HHHHHhCCccCHHHH-------HHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999999999999999 7778775441 1 11222211 1345666654433333333222
Q ss_pred Ccccccc--CCchHHHHHHHHHHHHHH
Q psy12573 265 GLITRVV--SSNEELESETKVLTSAIL 289 (315)
Q Consensus 265 Glv~~v~--~~~~~~~~~~~~~~~~l~ 289 (315)
.....+. .+ ++..+...+|.++-.
T Consensus 233 ~~~~~~~~~~~-~d~~e~~~af~ekr~ 258 (265)
T PLN02888 233 ERAHDYYNGMT-KEQFQKMQEFIAGRS 258 (265)
T ss_pred HHHHHHhccCC-HHHHHHHHHHHhcCC
Confidence 1222222 34 566666666666543
No 220
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.98 E-value=2.7e-10 Score=99.35 Aligned_cols=95 Identities=23% Similarity=0.275 Sum_probs=79.2
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
.+.+..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+.. |..+ |+..
T Consensus 98 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l----~~~i-----g~~~ 168 (272)
T PRK06210 98 QTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWIL----PRLV-----GHAN 168 (272)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhh----Hhhh-----CHHH
Confidence 34556788899999999999999999999999999999999999999999 998877654422 2222 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+ .+|+++++.+.+.++ .++|++...
T Consensus 169 a--~~l~ltg~~~~a~eA-------~~~Glv~~v 193 (272)
T PRK06210 169 A--LDLLLSARTFYAEEA-------LRLGLVNRV 193 (272)
T ss_pred H--HHHHHcCCccCHHHH-------HHcCCccee
Confidence 7 999999999999999 777877554
No 221
>KOG1681|consensus
Probab=98.97 E-value=6.8e-11 Score=95.72 Aligned_cols=136 Identities=21% Similarity=0.311 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcE
Q psy12573 111 KLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPI 189 (315)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpv 189 (315)
..+..+..+++.+..++++|||+|+++||.|.|+|..+...||+++.++.+-|...|+. ++..+.+. +.++||.|
T Consensus 107 ~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGT----L~RlpkvV 182 (292)
T KOG1681|consen 107 SLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGT----LNRLPKVV 182 (292)
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhh----HhhhhHHh
Confidence 35677788999999999999999999999999999999999999999999999999999 99888774 46788877
Q ss_pred EEEEcc-ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch---------HHHHhhhcCH------HHHHHHHhcC
Q psy12573 190 LAIISG-VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP---------AVALTRKVPL------GVVRSMTITG 253 (315)
Q Consensus 190 Ia~v~G-~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~---------~~~l~~~~g~------~~a~~~~~~g 253 (315)
| +... .++++++...-|.|+ ...|++...- ...++..++. .-.|+.++..
T Consensus 183 -----Gn~s~~--~elafTar~f~a~EA-------l~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ys 248 (292)
T KOG1681|consen 183 -----GNQSLA--RELAFTARKFSADEA-------LDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTKENLLYS 248 (292)
T ss_pred -----cchHHH--HHHHhhhhhcchhhh-------hhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHH
Confidence 7 6666 999999999999999 6667664331 1123333332 3557777777
Q ss_pred CCCCHHHHHHc
Q psy12573 254 IPISAQDAYNA 264 (315)
Q Consensus 254 ~~~~a~~a~~~ 264 (315)
+..+.++.+.+
T Consensus 249 rehsv~~sLny 259 (292)
T KOG1681|consen 249 REHSVEESLNY 259 (292)
T ss_pred hhhhhhhhHHH
Confidence 77777776543
No 222
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.97 E-value=6.8e-09 Score=99.02 Aligned_cols=89 Identities=20% Similarity=0.312 Sum_probs=73.0
Q ss_pred CCCCCHHHHHHHHHhhCCCC--ceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573 6 SVPLNYYAAIHAVQVSIPDN--CIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 82 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~ 82 (315)
+.+++|+++++.|++.++++ .+++.| |++..|. .. + ++..++++..+++|||++|.+++++++. + .|
T Consensus 353 ~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~-~~-~---~~~~~~~~~~~g~mG~glpaaiGa~lA~----~-~r 422 (535)
T TIGR03394 353 AEPIAPMDIARAVNDRFARHGQMPLAADIGDCLFTA-MD-M---DDAGLMAPGYYAGMGFGVPAGIGAQCTS----G-KR 422 (535)
T ss_pred CCCcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHH-Hh-c---CCCcEECcCccchhhhHHHHHHHHHhCC----C-CC
Confidence 45899999999999999865 468889 6654433 33 3 2578888889999999999999999984 3 46
Q ss_pred EEEEEcCCCccccchhhhHHhh
Q psy12573 83 VVCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 83 vvvl~g~g~~~~aG~Dl~~~~~ 104 (315)
+|+|+|||++.++++||.++.+
T Consensus 423 ~v~i~GDG~f~m~~~EL~Ta~r 444 (535)
T TIGR03394 423 ILTLVGDGAFQMTGWELGNCRR 444 (535)
T ss_pred eEEEEeChHHHhHHHHHHHHHH
Confidence 7889999999999999999876
No 223
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.96 E-value=6.9e-10 Score=96.06 Aligned_cols=95 Identities=22% Similarity=0.324 Sum_probs=79.2
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
++++..+...++|+|++|+|.+.|+|..++..||++++.+.++|+.|+.+ |+.+.++...+.... + |+..
T Consensus 86 ~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~----v-----g~~~ 156 (261)
T PRK11423 86 RQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTND----A-----GFHI 156 (261)
T ss_pred HHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHH----h-----HHHH
Confidence 45667788999999999999999999999999999999999999999999 988766554433222 2 7777
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+ .+++++++.+.+.++ .++|++...
T Consensus 157 a--~~l~l~g~~~~a~eA-------~~~GLv~~v 181 (261)
T PRK11423 157 V--KEMFFTASPITAQRA-------LAVGILNHV 181 (261)
T ss_pred H--HHHHHcCCCcCHHHH-------HHcCCcCcc
Confidence 7 999999999999999 777877554
No 224
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=5.8e-10 Score=98.33 Aligned_cols=96 Identities=22% Similarity=0.287 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+..++..+...|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+.. ++.+ |..
T Consensus 102 ~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l----~r~v-----G~~ 172 (296)
T PRK08260 102 GGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFL----PRLV-----GLQ 172 (296)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhH----HHhh-----CHH
Confidence 345667788899999999999999999999999999999999999999999 998877655432 2222 877
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+ .+|+++++.+.+.++ .++|++...
T Consensus 173 ~A--~~llltg~~~~a~eA-------~~~GLv~~v 198 (296)
T PRK08260 173 TA--LEWVYSGRVFDAQEA-------LDGGLVRSV 198 (296)
T ss_pred HH--HHHHHcCCccCHHHH-------HHCCCceee
Confidence 77 999999999999999 777777544
No 225
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=5.3e-10 Score=97.60 Aligned_cols=97 Identities=25% Similarity=0.342 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHH-HHHHHHHHHhcCCCcEEEEEcc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVS-TCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~kpvIa~v~G 195 (315)
.+++++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+ .++..+ .+|.-+ |
T Consensus 97 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~----~l~~~v-----G 167 (276)
T PRK05864 97 LLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSY----LLPRAI-----G 167 (276)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchhe----ehHhhh-----C
Confidence 3455667788999999999999999999999999999999999999999999 8875 555432 222222 8
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+..+ .+++++++.+.+.++ .++|++...
T Consensus 168 ~~~A--~~l~l~g~~~~a~eA-------~~~Glv~~v 195 (276)
T PRK05864 168 SSRA--FEIMLTGRDVDAEEA-------ERIGLVSRQ 195 (276)
T ss_pred HHHH--HHHHHcCCccCHHHH-------HHcCCccee
Confidence 8777 999999999999999 777877554
No 226
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=5.6e-10 Score=95.90 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=72.1
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
.++..+...++|+|++|+|.+.|+|..++..||++++++.++|..|+.+ |+.+..+..+.. ++.+ |. .+
T Consensus 80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l----~~~~-----g~-~a 149 (248)
T PRK06072 80 PIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFL----LKLT-----GQ-RF 149 (248)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHH----HHHh-----hH-HH
Confidence 4556678899999999999999999999999999999999999999999 998876654422 2222 64 45
Q ss_pred hhhHHHhhcCeeeeeCCceeeC
Q psy12573 200 AGCQLVATCDLAIATTASKFST 221 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~ 221 (315)
.+++++++.+.+.++..+|+
T Consensus 150 --~~lll~g~~~~a~eA~~~Gl 169 (248)
T PRK06072 150 --YEILVLGGEFTAEEAERWGL 169 (248)
T ss_pred --HHHHHhCCccCHHHHHHCCC
Confidence 89999999999999944433
No 227
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=5.6e-10 Score=96.12 Aligned_cols=94 Identities=26% Similarity=0.379 Sum_probs=78.6
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
+++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+..+...+ .+ |+..+
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~~-----g~~~a 158 (251)
T PRK06023 88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPR----LM-----GHQRA 158 (251)
T ss_pred HHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHH----HH-----hHHHH
Confidence 4456778899999999999999999999999999999999999999999 99887765543322 12 77766
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+++++++.+.+.++ .++|++...
T Consensus 159 --~~l~l~g~~~~a~eA-------~~~Glv~~v 182 (251)
T PRK06023 159 --FALLALGEGFSAEAA-------QEAGLIWKI 182 (251)
T ss_pred --HHHHHhCCCCCHHHH-------HHcCCccee
Confidence 999999999999999 777887554
No 228
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=98.95 E-value=2e-08 Score=83.91 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=67.6
Q ss_pred HHhcC--CCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCc------------cCCCCCC---------------
Q psy12573 181 SILRH--PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGA------------RHGIFCS--------------- 231 (315)
Q Consensus 181 ~l~~~--~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~------------~~Gl~~~--------------- 231 (315)
.+.++ +||+++.++|.+.++|..|+++||.+++++.+.++...+ ++|+-+.
T Consensus 54 ~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~ 133 (207)
T TIGR00706 54 KLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTR 133 (207)
T ss_pred HHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCC
Confidence 34444 499999999999999999999999999999987755222 2333210
Q ss_pred -c-hH--HHH---------------h--hhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHH
Q psy12573 232 -T-PA--VAL---------------T--RKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283 (315)
Q Consensus 232 -~-~~--~~l---------------~--~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~ 283 (315)
. .. ..+ . |.+.....++ +..++.+++++|++.||||++... +++.+...+
T Consensus 134 ~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~-~~~~~~~~~ 204 (207)
T TIGR00706 134 ELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTE-DDALKWLAE 204 (207)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCH-HHHHHHHHH
Confidence 0 00 000 1 1122223333 457889999999999999999876 676655443
No 229
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=98.94 E-value=1.5e-08 Score=82.64 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=63.9
Q ss_pred HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhc-cCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573 12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLL-NNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 89 (315)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~-~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~ 89 (315)
+.+++.|++.+| |.+++.| |.+.. .. ++ ++.+++.++ +++||+++|.+++.+++. +.+||+++||
T Consensus 2 ~~~~~~l~~~l~-d~iiv~d~G~~~~---~~-~~~~~~~~~~~~---~gsmG~~lpaAiGa~la~-----~~~Vv~i~GD 68 (181)
T TIGR03846 2 IDAIRAIASYLE-DELVVSNIGVPSK---EL-YAIRDRPLNFYM---LGSMGLASSIGLGLALAT-----DRTVIVIDGD 68 (181)
T ss_pred HHHHHHHHHhCC-CCEEEecCCHhHH---HH-HhhhcCCCCeee---ccccccHHHHHHHHHHcC-----CCcEEEEEcc
Confidence 468899999998 9999999 65533 22 33 356777775 699999999999999974 5689999999
Q ss_pred CCccccchhhhHHhh
Q psy12573 90 SAFGFSGMELETLAV 104 (315)
Q Consensus 90 g~~~~aG~Dl~~~~~ 104 (315)
|++.++.+++.++.+
T Consensus 69 G~f~m~~~el~ta~~ 83 (181)
T TIGR03846 69 GSLLMNLGVLPTIAA 83 (181)
T ss_pred hHHHhhhhHHHHHHH
Confidence 998888888887653
No 230
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.94 E-value=5.5e-10 Score=97.34 Aligned_cols=93 Identities=24% Similarity=0.281 Sum_probs=77.5
Q ss_pred HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAA 200 (315)
Q Consensus 122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~ 200 (315)
++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+...... ..+ |+..+
T Consensus 99 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~----~~v-----G~~~a- 168 (273)
T PRK07396 99 LQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLA----RIV-----GQKKA- 168 (273)
T ss_pred HHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHH----HHh-----hHHHH-
Confidence 445678899999999999999999999999999999999999999999 8887665443221 112 87777
Q ss_pred hhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 201 GCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+|+++++.+.+.++ .++|++...
T Consensus 169 -~~l~ltg~~~~A~eA-------~~~GLv~~v 192 (273)
T PRK07396 169 -REIWFLCRQYDAQEA-------LDMGLVNTV 192 (273)
T ss_pred -HHHHHhCCCcCHHHH-------HHcCCcCee
Confidence 999999999999999 788888554
No 231
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.93 E-value=1.1e-09 Score=94.91 Aligned_cols=95 Identities=25% Similarity=0.339 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcch-h-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGY-N-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+.++..+...++|+|++|||.+.|+|..++..||++++.+.++|+.|+. . |+.+..+...+. +.-+ |+.
T Consensus 92 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l----~~~v-----G~~ 162 (262)
T PRK06144 92 DRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARL----VALL-----GAA 162 (262)
T ss_pred HHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHH----HHHh-----CHH
Confidence 4556678889999999999999999999999999999999999999998 3 777766554432 2222 777
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+ .+++++++.+.+.++ .++|++...
T Consensus 163 ~a--~~l~l~g~~~~a~eA-------~~~Glv~~v 188 (262)
T PRK06144 163 RV--KDMLFTARLLEAEEA-------LAAGLVNEV 188 (262)
T ss_pred HH--HHHHHcCCCcCHHHH-------HHcCCcCee
Confidence 77 999999999999999 788888554
No 232
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.92 E-value=1.6e-09 Score=106.32 Aligned_cols=96 Identities=26% Similarity=0.311 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh--cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
.++++..+.++++|+|++|||.|.|+|..++..||++++++. ++|+.|+.+ ++.++++.+++ +|+.+ |
T Consensus 97 ~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~r----Lprli-----G 167 (737)
T TIGR02441 97 GQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQR----LPKLT-----G 167 (737)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhh----HHHhh-----C
Confidence 345677889999999999999999999999999999999886 479999999 99998877653 23333 8
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
...+ .+|+++++.+.+.++ .++|++...
T Consensus 168 ~~~A--~~l~ltG~~i~a~eA-------~~~GLVd~v 195 (737)
T TIGR02441 168 VPAA--LDMMLTGKKIRADRA-------KKMGIVDQL 195 (737)
T ss_pred HHHH--HHHHHcCCcCCHHHH-------HHCCCCeEe
Confidence 7777 999999999999999 778887544
No 233
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.92 E-value=3.9e-10 Score=97.29 Aligned_cols=142 Identities=23% Similarity=0.343 Sum_probs=98.8
Q ss_pred HcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573 127 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV 205 (315)
Q Consensus 127 ~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~ 205 (315)
..+++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+. + |+..+ .+|+
T Consensus 88 ~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----v-----g~~~a--~~l~ 156 (254)
T PRK08252 88 RPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRR----I-----PYHIA--MELA 156 (254)
T ss_pred hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHH----c-----CHHHH--HHHH
Confidence 3589999999999999999999999999999999999999999 999887766543322 2 77777 9999
Q ss_pred hhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--HcCcccc
Q psy12573 206 ATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY--NAGLITR 269 (315)
Q Consensus 206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~Glv~~ 269 (315)
++++.+.+.++ .++|++.... ...+.+.+ + ....|+++..+...+.++++ +......
T Consensus 157 l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~ 229 (254)
T PRK08252 157 LTGDMLTAERA-------HELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAP 229 (254)
T ss_pred HcCCccCHHHH-------HHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 99999999999 6777774431 01122211 1 12456666554444444432 2233344
Q ss_pred ccCCchHHHHHHHHHHHH
Q psy12573 270 VVSSNEELESETKVLTSA 287 (315)
Q Consensus 270 v~~~~~~~~~~~~~~~~~ 287 (315)
.+.+ ++..+...+|.++
T Consensus 230 ~~~~-~~~~eg~~af~~k 246 (254)
T PRK08252 230 VFTS-ADAKEGATAFAEK 246 (254)
T ss_pred HhcC-chHHHHHHHHhcC
Confidence 4555 6666776666654
No 234
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.91 E-value=1.1e-09 Score=94.41 Aligned_cols=93 Identities=26% Similarity=0.305 Sum_probs=76.4
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
.++..+...++|+|++|||.+.|+|..+++.||++++.+.++|+.|+.+ |+.+.... ....+. + |+..+
T Consensus 87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~-~~l~~~----v-----g~~~a 156 (255)
T PRK07112 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVL-PFLIRR----I-----GTQKA 156 (255)
T ss_pred HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhh-HHHHHH----h-----CHHHH
Confidence 4566788899999999999999999999999999999999999999999 98876432 211111 2 77777
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+++++++.+.+.++ .++|++...
T Consensus 157 --~~l~l~g~~~~a~eA-------~~~Glv~~v 180 (255)
T PRK07112 157 --HYMTLMTQPVTAQQA-------FSWGLVDAY 180 (255)
T ss_pred --HHHHHhCCcccHHHH-------HHcCCCcee
Confidence 999999999999999 677777444
No 235
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.91 E-value=7.5e-10 Score=95.89 Aligned_cols=94 Identities=29% Similarity=0.379 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
.+++..+...|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+.. .+. |...
T Consensus 91 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l-~~l---------~~~~ 160 (260)
T PRK07827 91 TALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLL-PRL---------SPRA 160 (260)
T ss_pred HHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhH-Hhh---------hHHH
Confidence 45667788999999999999999999999999999999999999999999 998877655422 111 2234
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+ .+++++++.+.+.++ ..+|++...
T Consensus 161 a--~~l~l~g~~~~a~eA-------~~~Glv~~v 185 (260)
T PRK07827 161 A--ARYYLTGEKFGAAEA-------ARIGLVTAA 185 (260)
T ss_pred H--HHHHHhCCccCHHHH-------HHcCCcccc
Confidence 4 889999999999999 777777554
No 236
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=98.91 E-value=2e-08 Score=81.00 Aligned_cols=86 Identities=35% Similarity=0.561 Sum_probs=71.2
Q ss_pred HHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCc
Q psy12573 14 AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF 92 (315)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~ 92 (315)
+++.|.+.++++.+++.| |.+..+..++ +..+.+...+....+++||+++|.+++.++.. ++.++|+++|||.+
T Consensus 2 ~~~~l~~~~~~~~~i~~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~ 76 (168)
T cd00568 2 VLAALRAALPEDAIVVNDAGNSAYWAYRY-LPLRRGRRFLTSTGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGF 76 (168)
T ss_pred HHHHHHHHCCCCCEEEeCCcHHHHHHHHh-eeeCCCCcEEeCCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHH
Confidence 567888999999999999 7767777666 55667777777778899999999999999985 67899999999998
Q ss_pred cccchhhhHHhh
Q psy12573 93 GFSGMELETLAV 104 (315)
Q Consensus 93 ~~aG~Dl~~~~~ 104 (315)
++...++.+...
T Consensus 77 ~~~~~~l~ta~~ 88 (168)
T cd00568 77 MMTGQELATAVR 88 (168)
T ss_pred hccHHHHHHHHH
Confidence 887777776643
No 237
>PLN02921 naphthoate synthase
Probab=98.90 E-value=6e-10 Score=99.00 Aligned_cols=148 Identities=21% Similarity=0.247 Sum_probs=100.1
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
+++..+..+++|+|++|+|.+.|+|..++..||++++++.++|+.++.+ |+++..+..... +..+ |...+
T Consensus 152 ~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L----~rli-----G~~~A 222 (327)
T PLN02921 152 DLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIM----ARLV-----GQKKA 222 (327)
T ss_pred HHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHH----HHHh-----CHHHH
Confidence 3456778899999999999999999999999999999999999999998 888766544422 2222 77777
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhcC------HHHHHHHHhcCCCCCHH-HHHHc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKVP------LGVVRSMTITGIPISAQ-DAYNA 264 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~g------~~~a~~~~~~g~~~~a~-~a~~~ 264 (315)
.+|+++++.+.+.++ .++||+.... . ..+.+.+. ....|+++......... ...+.
T Consensus 223 --~ellltG~~~~A~eA-------~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~~~~~~~~~~~ 293 (327)
T PLN02921 223 --REMWFLARFYTASEA-------LKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSALNAADDGHAGLQELGG 293 (327)
T ss_pred --HHHHHcCCcCCHHHH-------HHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 999999999999999 7888875441 1 12222221 13456666544322111 11111
Q ss_pred CccccccCCchHHHHHHHHHHHH
Q psy12573 265 GLITRVVSSNEELESETKVLTSA 287 (315)
Q Consensus 265 Glv~~v~~~~~~~~~~~~~~~~~ 287 (315)
......+.+ ++..+...+|.++
T Consensus 294 ~~~~~~~~s-~d~~egi~Af~ek 315 (327)
T PLN02921 294 NATLLFYGS-EEGNEGRTAYLEG 315 (327)
T ss_pred HHHHHHhcC-HHHHHHHHHHhcc
Confidence 233344556 6777777777655
No 238
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=98.89 E-value=5.3e-09 Score=83.17 Aligned_cols=132 Identities=27% Similarity=0.320 Sum_probs=92.5
Q ss_pred CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchh
Q psy12573 32 GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPK 111 (315)
Q Consensus 32 g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~ 111 (315)
|.+..|.+++ +..++|.+++++..+++||+++|.+++.+++ .|+.++|+++|||.++++..+|.++.+...
T Consensus 3 G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~~~el~ta~~~~~---- 73 (153)
T PF02775_consen 3 GCHTMWAAQY-LRVRRPRRFLTSGGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMSLQELATAVRYGL---- 73 (153)
T ss_dssp SHHHHHHHHH-SCCSSTTEEEESTTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHHGGGHHHHHHTTS----
T ss_pred ChhHHHHHHh-cCcCCCCeEEcCCCccccCCHHHhhhHHHhh----cCcceeEEecCCcceeeccchhHHHhhccc----
Confidence 7788999998 8889999999999999999999999999997 489999999999999999999988765211
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecc----------cch------hccccChhhhhhhcCCCCcchh-hHH--
Q psy12573 112 LDEIFSTCSDLMLSILRHPVPILAIISGVAAAA----------GCQ------LVATCDLAIATTASKFSTPGYN-ILV-- 172 (315)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~----------G~~------f~~g~D~~~~~~~~~~~~~~~~-~~~-- 172 (315)
..++.++|--.+|. +.. .....|+..+++. ++.+..+ .-.
T Consensus 74 -------------------~v~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a--~G~~~~~v~~~~~ 132 (153)
T PF02775_consen 74 -------------------PVVIVVLNNGGYGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEA--FGIKGARVTTPDP 132 (153)
T ss_dssp -------------------SEEEEEEESSBSHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHH--TTSEEEEESCHSH
T ss_pred -------------------eEEEEEEeCCcceEeccccccCcCcccccccccccccCCHHHHHHH--cCCcEEEEccCCH
Confidence 11222222211110 010 1234577777666 4554433 333
Q ss_pred HHHHHHHHHHhcCCCcEEEEE
Q psy12573 173 STCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 173 ~~~~~~~~~l~~~~kpvIa~v 193 (315)
.++...++.....++|++..|
T Consensus 133 ~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 133 EELEEALREALESGGPAVIEV 153 (153)
T ss_dssp HHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEc
Confidence 667777777778899987654
No 239
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.89 E-value=3.1e-08 Score=83.60 Aligned_cols=138 Identities=19% Similarity=0.164 Sum_probs=94.0
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG 145 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G 145 (315)
.++..+|+++..|+++++|+|+.+++.+ ++.++.++
T Consensus 32 ~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el------------------------------------------- 67 (222)
T cd07018 32 RDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL------------------------------------------- 67 (222)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------------------------------------
Confidence 8999999999999999999999988644 44443322
Q ss_pred chhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCcc
Q psy12573 146 CQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR 225 (315)
Q Consensus 146 ~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~ 225 (315)
...++.++..+|||||.++| +.++|..|+++||.+++.+.+.++..-+.
T Consensus 68 ------------------------------~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~ 116 (222)
T cd07018 68 ------------------------------RQALERFRASGKPVIAYADG-YSQGQYYLASAADEIYLNPSGSVELTGLS 116 (222)
T ss_pred ------------------------------HHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCEEEECCCceEEeeccc
Confidence 12333445578999999998 77889999999999999999888774322
Q ss_pred ------------CCCCCCc---------hHHH-----------------------Hh------hhcCHHHHHHHHhcCCC
Q psy12573 226 ------------HGIFCST---------PAVA-----------------------LT------RKVPLGVVRSMTITGIP 255 (315)
Q Consensus 226 ------------~Gl~~~~---------~~~~-----------------------l~------~~~g~~~a~~~~~~g~~ 255 (315)
+|+-+.. +..+ +. |.+.....++ +..|+.
T Consensus 117 ~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~-~~~~~~ 195 (222)
T cd07018 117 AETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRGLSPDALEA-LIDLGG 195 (222)
T ss_pred hhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHcCC
Confidence 2221110 0000 00 1111223333 345889
Q ss_pred CCHHHHHHcCccccccCCchHHHHH
Q psy12573 256 ISAQDAYNAGLITRVVSSNEELESE 280 (315)
Q Consensus 256 ~~a~~a~~~Glv~~v~~~~~~~~~~ 280 (315)
+++++|++.||||++... +++.+.
T Consensus 196 ~~~~~A~~~GLvD~i~~~-~e~~~~ 219 (222)
T cd07018 196 DSAEEALEAGLVDGLAYR-DELEAR 219 (222)
T ss_pred cHHHHHHHCCCCCcCCcH-HHHHHH
Confidence 999999999999999876 666554
No 240
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.89 E-value=3.9e-09 Score=92.13 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=73.9
Q ss_pred cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHh
Q psy12573 128 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVA 206 (315)
Q Consensus 128 ~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l 206 (315)
..|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++......+ -+ |+..+ .+|++
T Consensus 119 ~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~----~v-----G~~~A--~elll 187 (287)
T PRK08788 119 GAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLAR----RV-----GPKLA--EELIL 187 (287)
T ss_pred CCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHH----Hh-----hHHHH--HHHHH
Confidence 689999999999999999999999999999999999999999 99887765543222 22 77777 99999
Q ss_pred hcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 207 TCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 207 ~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+++.+.++++ .++|++...
T Consensus 188 tG~~l~A~eA-------~~~GLV~~v 206 (287)
T PRK08788 188 SGKLYTAEEL-------HDMGLVDVL 206 (287)
T ss_pred cCCCCCHHHH-------HHCCCCcEe
Confidence 9999999999 777877543
No 241
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.86 E-value=1.4e-09 Score=93.46 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=78.7
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
+++..+...|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+...+. + |+..+
T Consensus 85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----~-----g~~~a 155 (249)
T PRK07110 85 NLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEK----L-----GLALG 155 (249)
T ss_pred HHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHH----h-----CHHHH
Confidence 3456678899999999999999999999999999999999999999999 998877655433222 2 77777
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+++++++.+.+.++ .++|++...
T Consensus 156 --~~llltg~~~~a~eA-------~~~Glv~~v 179 (249)
T PRK07110 156 --QEMLLTARYYRGAEL-------KKRGVPFPV 179 (249)
T ss_pred --HHHHHcCCccCHHHH-------HHcCCCeEE
Confidence 999999999999999 777877544
No 242
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.86 E-value=6.4e-10 Score=99.74 Aligned_cols=93 Identities=22% Similarity=0.228 Sum_probs=77.2
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
+++..+..+++|+|++|||.++|+|..++..||++++++.++|+.|+.+ |+.+.++..+. ++ .+.| ..+
T Consensus 91 ~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~----L~-----r~~g-~~a 160 (342)
T PRK05617 91 RLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYF----LS-----RAPG-ALG 160 (342)
T ss_pred HHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeE----eh-----hccc-HHH
Confidence 4556778899999999999999999999999999999999999999999 99887775542 22 2224 344
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+|+++++.+.+.++ .++|++..+
T Consensus 161 --~~llltG~~i~A~eA-------~~~GLv~~v 184 (342)
T PRK05617 161 --TYLALTGARISAADA-------LYAGLADHF 184 (342)
T ss_pred --HHHHHcCCCCCHHHH-------HHcCCccee
Confidence 999999999999999 777877554
No 243
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=98.86 E-value=3.1e-10 Score=91.27 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=74.7
Q ss_pred HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHH-HHHHHHHHhcCCCcEEEEEccccch
Q psy12573 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVST-CSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
+-..|..+|||+|+.|+|++.|+|..+-.-||+.+++++++|+...-+ +.+.. ++..+. +.+.|.-.+
T Consensus 108 lQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~yl----------ar~VGqKkA 177 (282)
T COG0447 108 LQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYL----------ARIVGQKKA 177 (282)
T ss_pred HHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHH----------HHHhhhhhh
Confidence 334577899999999999999999999999999999999999988777 54443 333331 334488888
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.++.+.|....|.++ .++|++..+
T Consensus 178 --rEIwfLcR~Y~A~ea-------l~MGlVN~V 201 (282)
T COG0447 178 --REIWFLCRQYDAEEA-------LDMGLVNTV 201 (282)
T ss_pred --HHhhhhhhhccHHHH-------HhcCceeee
Confidence 999999999999999 888988665
No 244
>PRK08321 naphthoate synthase; Validated
Probab=98.85 E-value=2e-09 Score=95.12 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=76.7
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh-hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
++...+..+++|+|++|+|.+.|+|..+++.||+++++ +.++|+.++.+ ++.+..+..... ++-+ |+..
T Consensus 126 ~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L----~r~v-----G~~~ 196 (302)
T PRK08321 126 EVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYL----ARQV-----GQKF 196 (302)
T ss_pred HHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHH----HHHh-----CHHH
Confidence 34456788999999999999999999999999999998 57899999998 887765544322 2222 8877
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+ .+|+++++.+.+.++ .++|++...
T Consensus 197 A--~~l~ltG~~~~A~eA-------~~~GLv~~v 221 (302)
T PRK08321 197 A--REIFFLGRTYSAEEA-------HDMGAVNAV 221 (302)
T ss_pred H--HHHHHcCCccCHHHH-------HHCCCceEe
Confidence 7 999999999999999 788887544
No 245
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.84 E-value=5.1e-09 Score=102.53 Aligned_cols=96 Identities=23% Similarity=0.318 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.++++..+..+++|+|++|||.+.|+|.+++..||++++++.++|+.|+.+ |+.|.++.+++..+. + |..
T Consensus 91 ~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rl----i-----G~~ 161 (714)
T TIGR02437 91 ANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRV----I-----GAD 161 (714)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHH----h-----CHH
Confidence 345667889999999999999999999999999999999999999999999 999988876644322 2 777
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+ ++++++++.+.+.++ .++|++...
T Consensus 162 ~A--~~llltG~~~~A~eA-------~~~GLvd~v 187 (714)
T TIGR02437 162 NA--LEWIASGKENRAEDA-------LKVGAVDAV 187 (714)
T ss_pred HH--HHHHHcCCcCCHHHH-------HHCCCCcEe
Confidence 76 999999999999999 788888654
No 246
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.83 E-value=1.4e-09 Score=91.72 Aligned_cols=95 Identities=21% Similarity=0.207 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
++++.++.+.|+|+|++++|++.|+|..++..||++++.+.++|+.|+.+ ++.+..+......+.. |...
T Consensus 89 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i---------g~~~ 159 (222)
T PRK05869 89 QQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA---------GPSR 159 (222)
T ss_pred HHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh---------CHHH
Confidence 45667888999999999999999999999999999999999999999999 9888776544332222 6666
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+ .+++++++.+.+.++ .++|++...
T Consensus 160 a--~~l~ltg~~~~a~eA-------~~~Glv~~v 184 (222)
T PRK05869 160 A--KELVFSGRFFDAEEA-------LALGLIDEM 184 (222)
T ss_pred H--HHHHHcCCCcCHHHH-------HHCCCCCEe
Confidence 6 999999999999999 777887654
No 247
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=98.82 E-value=6.8e-08 Score=86.93 Aligned_cols=86 Identities=34% Similarity=0.465 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCC-----CcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573 9 LNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNL-----PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 82 (315)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~-----~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~ 82 (315)
++++++++.|.+.++++++|+.+ |........ +. .. ++++++ +++||+++|.+++.++.. ++.+
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~--~~-~~~~~~~~~~f~~---~GsMG~a~p~AlG~ala~----p~r~ 241 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIVSTTGKTSRELYE--LR-DRIGQGHARDFLT---VGSMGHASQIALGLALAR----PDQR 241 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHH--hh-cccccCCCCceEe---echhhhHHHHHHHHHHHC----CCCC
Confidence 99999999999999999999998 653322111 21 12 466665 499999999999999985 7889
Q ss_pred EEEEEcCCCccccchhhhHHhh
Q psy12573 83 VVCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 83 vvvl~g~g~~~~aG~Dl~~~~~ 104 (315)
||+|+|||.+.+..+++.+..+
T Consensus 242 Vv~i~GDGsflm~~~eL~t~~~ 263 (361)
T TIGR03297 242 VVCLDGDGAALMHMGGLATIGT 263 (361)
T ss_pred EEEEEChHHHHHHHHHHHHHHH
Confidence 9999999998888888777653
No 248
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=8e-09 Score=89.16 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=79.3
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
+++..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+ .+ |+..+
T Consensus 85 ~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r----~v-----G~~~a 155 (258)
T PRK06190 85 NPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQ----KV-----GIGRA 155 (258)
T ss_pred HHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHH----Hh-----CHHHH
Confidence 4456788899999999999999999999999999999999999999999 99887765543322 22 77777
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+|+++++.+.+.++ .++|++...
T Consensus 156 --~~l~ltg~~~~a~eA-------~~~GLv~~v 179 (258)
T PRK06190 156 --RRMSLTGDFLDAADA-------LRAGLVTEV 179 (258)
T ss_pred --HHHHHhCCccCHHHH-------HHcCCCeEe
Confidence 999999999999999 788887554
No 249
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.80 E-value=3.4e-09 Score=93.37 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=71.5
Q ss_pred HHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh--hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573 123 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN--ILVSTCSDLMLSILRHPVPILAIISGVAAAA 200 (315)
Q Consensus 123 ~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~ 200 (315)
+..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ +... ...+ ..+ + |...+
T Consensus 105 ~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~--~~~----v-----G~~~A- 170 (298)
T PRK12478 105 FMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW--LYR----L-----SLAKV- 170 (298)
T ss_pred HHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH--HHH----h-----hHHHH-
Confidence 44577899999999999999999999999999999999999999987 3332 1121 111 2 77777
Q ss_pred hhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 201 GCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+|+++++.+.+.++ .++|++..+
T Consensus 171 -~~llltg~~i~A~eA-------~~~GLV~~v 194 (298)
T PRK12478 171 -KWHSLTGRPLTGVQA-------AEAELINEA 194 (298)
T ss_pred -HHHHHcCCccCHHHH-------HHcCCccee
Confidence 999999999999999 788887554
No 250
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.80 E-value=3.8e-09 Score=91.07 Aligned_cols=88 Identities=25% Similarity=0.238 Sum_probs=74.0
Q ss_pred HcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573 127 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV 205 (315)
Q Consensus 127 ~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~ 205 (315)
...++|+|++|||.+.|+|..++..||++++.++++|+.|+.+ |+.+..+..+...+. + |+..+ .+++
T Consensus 90 ~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----i-----G~~~a--~~ll 158 (254)
T PRK08259 90 MRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRL----I-----GHSRA--MDLI 158 (254)
T ss_pred hcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHH----h-----CHHHH--HHHH
Confidence 3689999999999999999999999999999999999999999 888776655433221 2 77776 9999
Q ss_pred hhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 206 ATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
++++.+.++++ .++|++...
T Consensus 159 l~g~~~~a~eA-------~~~Glv~~v 178 (254)
T PRK08259 159 LTGRPVDADEA-------LAIGLANRV 178 (254)
T ss_pred HcCCccCHHHH-------HHcCCCCEe
Confidence 99999999999 788888654
No 251
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.79 E-value=5.9e-09 Score=102.28 Aligned_cols=96 Identities=21% Similarity=0.287 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+++++..+..+++|+|++|||.+.|+|..+++.||++++++.++|+.|+.+ |+.+..+..++.. .-+ |..
T Consensus 91 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~----rlv-----G~~ 161 (715)
T PRK11730 91 ANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLP----RLI-----GAD 161 (715)
T ss_pred HHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHH----Hhc-----CHH
Confidence 445667889999999999999999999999999999999999999999999 9999887765432 222 777
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+ .+|+++++.+.+.++ .++|++...
T Consensus 162 ~A--~~llltG~~~~A~eA-------~~~GLv~~v 187 (715)
T PRK11730 162 NA--LEWIAAGKDVRAEDA-------LKVGAVDAV 187 (715)
T ss_pred HH--HHHHHcCCcCCHHHH-------HHCCCCeEe
Confidence 77 999999999999999 777777544
No 252
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.74 E-value=1.3e-08 Score=99.85 Aligned_cols=95 Identities=23% Similarity=0.359 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh--cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
++++..+.++++|+|++|||.|.|+|..++..||++++++. ++|+.|+.+ |+.+.++...+. +.-+ |.
T Consensus 91 ~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L----~r~v-----G~ 161 (708)
T PRK11154 91 QQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRL----PRLI-----GV 161 (708)
T ss_pred HHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHH----Hhhc-----CH
Confidence 45667788999999999999999999999999999999886 479999999 998887765433 2222 77
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
..+ ++|+++++.+.+.++ .++|++...
T Consensus 162 ~~A--~~llltG~~i~a~eA-------~~~GLv~~v 188 (708)
T PRK11154 162 STA--LDMILTGKQLRAKQA-------LKLGLVDDV 188 (708)
T ss_pred HHH--HHHHHhCCcCCHHHH-------HHCCCCcEe
Confidence 777 999999999999999 777777543
No 253
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.73 E-value=9.8e-08 Score=81.23 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhCC--CCceEEeC-CChhhHhhhhhhccCCCcccccCC--CCccccchHHHHHHHHHHhh-hcCCCCeEE
Q psy12573 11 YYAAIHAVQVSIP--DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAG--TFGTMGVGLGFALAAALYCN-HYAPGKRVV 84 (315)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~--~~~~mg~~~~~~l~~~l~~~-~~d~~~~vv 84 (315)
+..+++.|.+.++ +|.+++.| |.++.|..++ ...+.+.+.++.. ..++||+++|.++++++..- +.+++.+||
T Consensus 13 ~~~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv 91 (237)
T cd02018 13 EVTAVRVVLAALPAPEDTVIANSTGCSSVYASTA-PFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVV 91 (237)
T ss_pred cHHHHHHHHHHhCCCCCEEEEeCCCccceecccC-cCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEE
Confidence 3457888888898 99999999 9988888776 5555556666553 34999999999999998711 113788999
Q ss_pred EEEcCCCcc-ccchhhhHHh
Q psy12573 85 CVQGDSAFG-FSGMELETLA 103 (315)
Q Consensus 85 vl~g~g~~~-~aG~Dl~~~~ 103 (315)
+|+|||+++ +..+.+.+..
T Consensus 92 ~i~GDG~~~~~g~~~l~ta~ 111 (237)
T cd02018 92 VIGGDGATYDIGFGALSHSL 111 (237)
T ss_pred EEeCchHHHhccHHHHHHHH
Confidence 999999865 3555555543
No 254
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.72 E-value=6.2e-09 Score=92.06 Aligned_cols=95 Identities=23% Similarity=0.260 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
..+.+++..+...+||+|++|||+|+|+|..++..||++++++.++|+.|+.+ +..+....+.+ .-|
T Consensus 114 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~~~~~~------------~vG 181 (302)
T PRK08272 114 SRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAY------------RLG 181 (302)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChHHHHHH------------Hhh
Confidence 34456677888999999999999999999999999999999999999999987 44443221111 128
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+..+ .+|+++++.+.+.++ .++|++...
T Consensus 182 ~~~A--~~llltG~~i~a~eA-------~~~GLv~~v 209 (302)
T PRK08272 182 PQRA--KRLLFTGDCITGAQA-------AEWGLAVEA 209 (302)
T ss_pred HHHH--HHHHHcCCccCHHHH-------HHcCCCcee
Confidence 8877 999999999999999 777887554
No 255
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.71 E-value=3.4e-09 Score=96.30 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=77.7
Q ss_pred HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
.++..+..+++|+|++|+|.++|+|..++..||++++++.++|+.|+.+ |++++.+..+.. .++ .|. .+
T Consensus 96 ~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L-~rl--------~g~-~a 165 (379)
T PLN02874 96 WLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYIL-SRL--------PGH-LG 165 (379)
T ss_pred HHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHH-Hhh--------hHH-HH
Confidence 3456788899999999999999999999999999999999999999999 999988766533 222 253 44
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+|+++++.+.+.++ .++|++...
T Consensus 166 --~~l~ltG~~i~a~eA-------~~~GLv~~v 189 (379)
T PLN02874 166 --EYLALTGARLNGKEM-------VACGLATHF 189 (379)
T ss_pred --HHHHHcCCcccHHHH-------HHcCCccEE
Confidence 899999999999999 777877554
No 256
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=98.70 E-value=1.3e-07 Score=80.24 Aligned_cols=89 Identities=16% Similarity=0.082 Sum_probs=66.7
Q ss_pred CHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhh---hccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 10 NYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSL---LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~---l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
.+--+++.|++.+|+|.+++.| |.+..|..... ++.+.+...++.. ++||+++|.++++++.. |+.+||+
T Consensus 12 ~~~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~~--gsmG~GlpaAiGa~~a~----p~r~VV~ 85 (235)
T cd03376 12 GAALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFENA--AAVASGIEAALKALGRG----KDITVVA 85 (235)
T ss_pred ccHHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCccccccceehhhcCH--HHHHHHHHHHHHHhccC----CCCeEEE
Confidence 3446788999999999999999 77655433221 4455555655543 79999999999987763 7889999
Q ss_pred EEcCCCcc-ccchhhhHHhh
Q psy12573 86 VQGDSAFG-FSGMELETLAV 104 (315)
Q Consensus 86 l~g~g~~~-~aG~Dl~~~~~ 104 (315)
|+|||.+| +..++|.++.+
T Consensus 86 i~GDG~~~~m~~~eL~ta~~ 105 (235)
T cd03376 86 FAGDGGTADIGFQALSGAAE 105 (235)
T ss_pred EEcCchHHhhHHHHHHHHHH
Confidence 99999953 67777777654
No 257
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.69 E-value=1.5e-07 Score=76.24 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-----hHH------HHhhhcC--
Q psy12573 176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-----PAV------ALTRKVP-- 242 (315)
Q Consensus 176 ~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-----~~~------~l~~~~g-- 242 (315)
...+..+..+++|+++.|+|.|.++|..++++||++++.+.+.++.++.-.+-.... ... .++++-|
T Consensus 48 ~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~ 127 (178)
T cd07021 48 LEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAAEKKGRD 127 (178)
T ss_pred HHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 446677889999999999999999999999999999999999998876543221100 011 1333333
Q ss_pred HHHHHHHHhcC-------------CCCCHHHHHHcCccccccCCchHH
Q psy12573 243 LGVVRSMTITG-------------IPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 243 ~~~a~~~~~~g-------------~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
...+..|+... -.++++||++.|+++.+.++.+++
T Consensus 128 ~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~l 175 (178)
T cd07021 128 PDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDEL 175 (178)
T ss_pred HHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHH
Confidence 34666666654 269999999999999998874444
No 258
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.67 E-value=3.3e-08 Score=96.84 Aligned_cols=95 Identities=21% Similarity=0.331 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh--cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
++++..+..+++|+|++|||.+.|+|..++..||+++++++ ++|+.|+.+ ++.+..+..++. |.-+ |.
T Consensus 86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L----~r~v-----G~ 156 (699)
T TIGR02440 86 QVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRL----PRLI-----GV 156 (699)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHH----HHhc-----CH
Confidence 45666788999999999999999999999999999999875 689999999 999888766533 2222 77
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
..+ ++|+++++.+.+.++ .++|++...
T Consensus 157 ~~A--~~llltG~~~~a~eA-------~~~GLV~~v 183 (699)
T TIGR02440 157 STA--LDMILTGKQLRAKQA-------LKLGLVDDV 183 (699)
T ss_pred HHH--HHHHHcCCcCCHHHH-------HhCCCCcEe
Confidence 777 999999999999999 777777443
No 259
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=1.4e-08 Score=86.30 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh-cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
.+++..+...++|+|+++||.+.|+|..++..||++++.+. ++|+.|+.+ |+.+..+.......++ |..
T Consensus 81 ~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~---------g~~ 151 (229)
T PRK06213 81 STLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRL---------TPS 151 (229)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHc---------CHH
Confidence 35567788999999999999999999999999999999988 889999999 8764443332222222 444
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+ .+++++++.+.+.++ .++|++...
T Consensus 152 ~a--~~lll~g~~~~a~eA-------~~~Glv~~v 177 (229)
T PRK06213 152 AF--QRAVINAEMFDPEEA-------VAAGFLDEV 177 (229)
T ss_pred HH--HHHHHcCcccCHHHH-------HHCCCceec
Confidence 44 789999999999999 788888654
No 260
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.64 E-value=5.8e-07 Score=74.18 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=56.8
Q ss_pred HHHHHHHhh--CCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573 13 AAIHAVQVS--IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 89 (315)
Q Consensus 13 ~~~~~~~~~--~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~ 89 (315)
.+.+.+.+. .|+|.++++| |.+ .|.++. ++. +..+++||+++|.+++.++.. |+.+||+++||
T Consensus 13 ~~~~~~~~~~~~~~d~ii~~D~G~~-~~~~~~-~~~--------~~~~g~mG~glpaAiGa~la~----p~r~Vv~i~GD 78 (193)
T cd03375 13 ALAKALAELGIDPEKVVVVSGIGCS-SRLPYY-FNT--------YGFHTLHGRALAVATGVKLAN----PDLTVIVVSGD 78 (193)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCChh-ceehhh-ccc--------cchhhhhccHHHHHHHHHHhC----CCCeEEEEecc
Confidence 344455442 3678999999 664 454433 321 233489999999999999985 89999999999
Q ss_pred CCcc-ccchhhhHHhh
Q psy12573 90 SAFG-FSGMELETLAV 104 (315)
Q Consensus 90 g~~~-~aG~Dl~~~~~ 104 (315)
|++| +..+++.+..+
T Consensus 79 Gs~f~m~~~eL~ta~~ 94 (193)
T cd03375 79 GDLAAIGGNHFIHAAR 94 (193)
T ss_pred chHhhccHHHHHHHHH
Confidence 9954 67888888765
No 261
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=2.5e-08 Score=87.48 Aligned_cols=94 Identities=27% Similarity=0.334 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+.+++..+.++++|+|++|||.+.|+|..+++.||++++++.++|+.|+.+ |+. ... .+. ++.-+ |+.
T Consensus 107 ~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~-~~~-~~~----l~~~i-----G~~ 175 (288)
T PRK08290 107 YLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIP-GVE-YFA----HPWEL-----GPR 175 (288)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcC-cch-HHH----HHHHh-----hHH
Confidence 345667788999999999999999999999999999999999999999999 874 222 211 11112 777
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
.+ .+|+++++.+.+.++ .++|++...
T Consensus 176 ~A--~~llltG~~i~A~eA-------~~~GLV~~v 201 (288)
T PRK08290 176 KA--KELLFTGDRLTADEA-------HRLGMVNRV 201 (288)
T ss_pred HH--HHHHHcCCCCCHHHH-------HHCCCccEe
Confidence 77 999999999999999 788888654
No 262
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.58 E-value=3e-08 Score=84.66 Aligned_cols=95 Identities=22% Similarity=0.262 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh-hhcCCCCcchh-hHH-HHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGYN-ILV-STCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~-~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
++++..+.+.++|+|++|||.+.|+|..++..||++++. +.++|+.|+.+ |+. +.+. .......+ |.
T Consensus 84 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~-~~~l~~~v---------G~ 153 (239)
T PLN02267 84 RPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYF-MALLRAKI---------GS 153 (239)
T ss_pred HHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHH-HHHHHHHc---------Ch
Confidence 456677889999999999999999999999999999997 45689999999 885 6554 22221112 44
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
..+ -.++++++..+.+.++ .++|++...
T Consensus 154 ~~a-~~~llltG~~~~a~eA-------~~~Glv~~v 181 (239)
T PLN02267 154 PAA-RRDVLLRAAKLTAEEA-------VEMGIVDSA 181 (239)
T ss_pred HHH-HHHHHHcCCcCCHHHH-------HHCCCccee
Confidence 433 0379999999999999 777877554
No 263
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.57 E-value=3.1e-07 Score=79.11 Aligned_cols=90 Identities=24% Similarity=0.369 Sum_probs=80.1
Q ss_pred CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573 5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83 (315)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v 83 (315)
++.|++||+++++.++.++.|...++. |-++...++. |...+|+|+++-+.-+.+||.+|++|+...+ ||+..+
T Consensus 366 d~vp~kpqrvyeemn~~fgrd~~yvstiglsqia~aqf-lhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~v 440 (592)
T COG3960 366 DNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQF-LHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNV 440 (592)
T ss_pred ccCCCCHHHHHHHHHhhcCCceeEEEeccHHHHhhhhh-hhhcCCcceeecCccCCcccccchhhceeec----CCCCce
Confidence 567999999999999999999988888 9888888888 9999999999999999999999999988765 699999
Q ss_pred EEEEcCCCccccchhh
Q psy12573 84 VCVQGDSAFGFSGMEL 99 (315)
Q Consensus 84 vvl~g~g~~~~aG~Dl 99 (315)
|-|+||-.|.|---++
T Consensus 441 valsgdydfqfmieel 456 (592)
T COG3960 441 VAISGDYDFQFLIEEL 456 (592)
T ss_pred EEeecCchHHHHHHHH
Confidence 9999998877754443
No 264
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=98.54 E-value=2.1e-06 Score=75.23 Aligned_cols=80 Identities=26% Similarity=0.375 Sum_probs=60.4
Q ss_pred HHHHHHHHHhh--CCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEE
Q psy12573 11 YYAAIHAVQVS--IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ 87 (315)
Q Consensus 11 ~~~~~~~~~~~--~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~ 87 (315)
++.+++++++. .|+|.++++| |.+. +...+ ++ .....++||+++|.+++.+++. |+.+||+++
T Consensus 30 ~~~i~~al~~l~l~p~d~vivsdiG~s~-~~~~y-l~--------~~~~~g~mG~alpaAiGaklA~----pd~~VV~i~ 95 (301)
T PRK05778 30 LNAIIQALAELGLDPDKVVVVSGIGCSS-KIPGY-FL--------SHGLHTLHGRAIAFATGAKLAN----PDLEVIVVG 95 (301)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCcHhh-hhhhh-cc--------cCccchhhccHHHHHHHHHHHC----CCCcEEEEe
Confidence 45778888886 4788889999 6644 33332 22 2333389999999999999985 899999999
Q ss_pred cCCCcc-ccchhhhHHhh
Q psy12573 88 GDSAFG-FSGMELETLAV 104 (315)
Q Consensus 88 g~g~~~-~aG~Dl~~~~~ 104 (315)
|||++| +.+++|.++.+
T Consensus 96 GDG~~~~mg~~eL~tA~r 113 (301)
T PRK05778 96 GDGDLASIGGGHFIHAGR 113 (301)
T ss_pred CccHHHhccHHHHHHHHH
Confidence 999976 56788887765
No 265
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.48 E-value=6.5e-08 Score=80.09 Aligned_cols=99 Identities=27% Similarity=0.357 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573 116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS 194 (315)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~ 194 (315)
...+++++..+...++|+|++++|.+.|+|..++..||++++.+.+.|+.|+.. ++.+..+........+
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~--------- 149 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLV--------- 149 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHh---------
Confidence 445667788888999999999999999999999999999999999999999999 8886555444332222
Q ss_pred cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 195 G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
|...+ .+++++++.+.+.++ .++|++...
T Consensus 150 g~~~a--~~~~l~g~~~~a~ea-------~~~Glv~~~ 178 (195)
T cd06558 150 GPARA--RELLLTGRRISAEEA-------LELGLVDEV 178 (195)
T ss_pred CHHHH--HHHHHcCCccCHHHH-------HHcCCCCee
Confidence 55555 899999999999999 788888655
No 266
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.44 E-value=3.8e-06 Score=72.84 Aligned_cols=83 Identities=22% Similarity=0.186 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHhh--CCCCceEEeC-CChhhHhhhhhhccCCCcccccCCC-CccccchHHHHHHHHHHhhhcCCCCe
Q psy12573 7 VPLNYYAAIHAVQVS--IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGT-FGTMGVGLGFALAAALYCNHYAPGKR 82 (315)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~-~~~mg~~~~~~l~~~l~~~~~d~~~~ 82 (315)
..+.++.+++.|++. .++|.++++| |.+. ++ .. +++... .++||+++|.+++.+++. |+.+
T Consensus 24 ~~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~----~~-~~------~~~~~~~~~~~G~alPaAiGaklA~----Pdr~ 88 (277)
T PRK09628 24 DGVILKSIIRAIDKLGWNMDDVCVVSGIGCSG----RF-SS------YVNCNTVHTTHGRAVAYATGIKLAN----PDKH 88 (277)
T ss_pred CchHHHHHHHHHHHhcCCCCCEEEEeCcCHHH----Hh-hc------cCCCCceeeccccHHHHHHHHHHHC----CCCe
Confidence 357789999999998 4888999999 7642 22 11 222223 369999999999999985 8999
Q ss_pred EEEEEcCCCccc-cchhhhHHhh
Q psy12573 83 VVCVQGDSAFGF-SGMELETLAV 104 (315)
Q Consensus 83 vvvl~g~g~~~~-aG~Dl~~~~~ 104 (315)
||+++|||++++ .+.++.+..+
T Consensus 89 VV~i~GDG~f~~~g~~el~ta~r 111 (277)
T PRK09628 89 VIVVSGDGDGLAIGGNHTIHGCR 111 (277)
T ss_pred EEEEECchHHHHhhHHHHHHHHH
Confidence 999999999654 3555555543
No 267
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.40 E-value=1.4e-06 Score=93.03 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHhhCCCCceEEeC-CCh----hhHhhhh----------hhccCCCccccc-CCCCccccc--hHHHHH
Q psy12573 7 VPLNYYAAIHAVQVSIPDNCIIVGE-GAN----TMDIGRS----------LLLNNLPRHRLD-AGTFGTMGV--GLGFAL 68 (315)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~----~~~~~~~----------~l~~~~~~n~~~-~~~~~~mg~--~~~~~l 68 (315)
.++++.++++.|++.+|+|.+++.| |.+ .+|..+. .++.+.|+..++ ...+|+||+ ++|.++
T Consensus 692 ~~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lpaAI 771 (1655)
T PLN02980 692 SSLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLSTAI 771 (1655)
T ss_pred CCcchHHHHHHHHHhCCCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHHHHH
Confidence 3689999999999999999999998 432 2444322 133466777775 677899999 599999
Q ss_pred HHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEec-----
Q psy12573 69 AAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAA----- 143 (315)
Q Consensus 69 ~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g----- 143 (315)
+.++.. +.+||+|+|||++++.+++|.++.+...+.| .+|.++|--..|
T Consensus 772 Gaala~-----~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lp---------------------i~iVV~NN~gggi~~~l 825 (1655)
T PLN02980 772 GFAVGC-----NKRVLCVVGDISFLHDTNGLSILSQRIARKP---------------------MTILVINNHGGAIFSLL 825 (1655)
T ss_pred HHhhcC-----CCCEEEEEehHHHHhhhhHHHHhhcccCCCC---------------------EEEEEEeCCCcHhhhcC
Confidence 999873 5689999999999999999988764111111 112222210000
Q ss_pred ----------ccchh--ccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 144 ----------AGCQL--VATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 144 ----------~G~~f--~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
.+..| ....|+..+++. |+....+ ....++...+......++|++..|.-
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~df~~lA~a--~G~~~~rV~~~~eL~~aL~~a~~~~~p~lIEV~t 888 (1655)
T PLN02980 826 PIAKRTEPRVLNQYFYTSHDISIENLCLA--HGVRHLHVGTKSELEDALFTSQVEQMDCVVEVES 888 (1655)
T ss_pred ccCCCCcchhHHHHhcCCCCCCHHHHHHH--cCCceeecCCHHHHHHHHHHhhccCCCEEEEEec
Confidence 00001 123566666666 5666555 55566666666666678898888876
No 268
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.31 E-value=6.4e-06 Score=71.89 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhC------CCCceEEeC-CChhhHhhhhhhccCCCcccccCCCC-ccccchHHHHHHHHHHhhhcCCCCe
Q psy12573 11 YYAAIHAVQVSI------PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTF-GTMGVGLGFALAAALYCNHYAPGKR 82 (315)
Q Consensus 11 ~~~~~~~~~~~~------~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~-~~mg~~~~~~l~~~l~~~~~d~~~~ 82 (315)
+..+++.|.+.+ |+|.++++| |.+..+. .+++...+ ++||+++|.+++.+++. |+.+
T Consensus 25 ~~~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~-----------~~~~~~~~~g~mG~alpaAiGaklA~----Pd~~ 89 (286)
T PRK11867 25 DGSILAALQRALAELGLDPENVAVVSGIGCSGRLP-----------GYINTYGFHTIHGRALAIATGLKLAN----PDLT 89 (286)
T ss_pred CHHHHHHHHHHHHHhCCCCCcEEEEeCCccccccC-----------ccccccchhhhhhcHHHHHHHHHHhC----CCCc
Confidence 345778888877 788999999 7654321 13455555 89999999999999985 8999
Q ss_pred EEEEEcCCC-ccccchhhhHHhh
Q psy12573 83 VVCVQGDSA-FGFSGMELETLAV 104 (315)
Q Consensus 83 vvvl~g~g~-~~~aG~Dl~~~~~ 104 (315)
||+++|||. +.+.+.++.++.+
T Consensus 90 VV~i~GDG~~f~mg~~eL~tA~r 112 (286)
T PRK11867 90 VIVVTGDGDALAIGGNHFIHALR 112 (286)
T ss_pred EEEEeCccHHHhCCHHHHHHHHH
Confidence 999999996 5557888888765
No 269
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.30 E-value=7.3e-06 Score=65.78 Aligned_cols=101 Identities=16% Similarity=0.280 Sum_probs=77.3
Q ss_pred HHHHHHhcCCCcEEEEEc---cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCC-----Cch----HH------HHh
Q psy12573 177 DLMLSILRHPVPILAIIS---GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC-----STP----AV------ALT 238 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~---G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~-----~~~----~~------~l~ 238 (315)
..+..+...++||++.+. |.+..+|..++++||.+++.+.+.++......|..+ ... .. .++
T Consensus 49 ~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A 128 (172)
T cd07015 49 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLA 128 (172)
T ss_pred HHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHH
Confidence 345566778999999999 999999999999999999999999988776433222 111 11 133
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573 239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
+.-| ...+.+++.....++++||+++|+++.+..+.+++
T Consensus 129 ~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~l 169 (172)
T cd07015 129 QESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINEL 169 (172)
T ss_pred HHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHH
Confidence 3334 35778888888999999999999999999874444
No 270
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.27 E-value=9.2e-06 Score=70.40 Aligned_cols=163 Identities=14% Similarity=0.171 Sum_probs=91.5
Q ss_pred HHHHHHHhhC------CCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 13 AAIHAVQVSI------PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 13 ~~~~~~~~~~------~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
-++..|.+.+ +++.+++.| |.+. |+..+ ++. ..+.++||+++|.+++.+++. |+.+||+
T Consensus 17 ~il~al~~al~~l~~~~~~~ivvsdiGc~~-~~~~~-~~~--------~~~~~~~G~alp~A~GaklA~----Pd~~VV~ 82 (279)
T PRK11866 17 GILEALRKALAELGIPPENVVVVSGIGCSS-NLPEF-LNT--------YGIHGIHGRVLPIATGVKWAN----PKLTVIG 82 (279)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCchhh-hhhhh-ccC--------CCcccccccHHHHHHHHHHHC----CCCcEEE
Confidence 3455565555 678889999 7665 55444 332 234689999999999999984 8999999
Q ss_pred EEcCCC-ccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHc-CCCcEE---EEEeeEEecccchhccccChhhhhhh
Q psy12573 86 VQGDSA-FGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILR-HPVPIL---AIISGVAAAAGCQLVATCDLAIATTA 160 (315)
Q Consensus 86 l~g~g~-~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i---~~v~G~~~g~G~~f~~g~D~~~~~~~ 160 (315)
++|||. +.+.+++|.+..+...+ ..+..++|..+.+.. ...|.. ....+.- .|. ...-.|+..++..
T Consensus 83 i~GDG~~f~ig~~eL~tA~rrn~~-----i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~--~g~-~~~~~d~~~iA~a 154 (279)
T PRK11866 83 YGGDGDGYGIGLGHLPHAARRNVD-----ITYIVSNNQVYGLTTGQASPTTPRGVKTKTTP--DGN-IEEPFNPIALALA 154 (279)
T ss_pred EECChHHHHccHHHHHHHHHHCcC-----cEEEEEEChhhhhhcccccCCCCCCceeeccC--CCC-CCCCCCHHHHHHH
Confidence 999995 55578888887652211 001112222222221 111110 0000000 000 0011266655554
Q ss_pred cCCCCcchh----hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 161 SKFSTPGYN----ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 161 ~~~~~~~~~----~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
++.+.+. ....++...+......+.|.+..+.-+|.-
T Consensus 155 --~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~v~~pC~~ 195 (279)
T PRK11866 155 --AGATFVARGFSGDVKHLKEIIKEAIKHKGFSFIDVLSPCVT 195 (279)
T ss_pred --CCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 2332111 223445556666667899999998888875
No 271
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.27 E-value=6.7e-06 Score=79.54 Aligned_cols=82 Identities=23% Similarity=0.227 Sum_probs=65.1
Q ss_pred CHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy12573 10 NYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 88 (315)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g 88 (315)
.+-.+++.|++.+++|.+++.| |.+..|.. .|.+.++. +++||+++|.+++.++.. ++.+||.++|
T Consensus 363 p~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~-------~p~~~~~~--~~~mG~~~~~AiGa~~a~----p~~~Vv~i~G 429 (595)
T TIGR03336 363 PHRATFYAMKKVADREAIFPSDIGCYTLGIQ-------PPLGTVDT--TLCMGASIGVASGLSKAG----EKQRIVAFIG 429 (595)
T ss_pred CChHHHHHHHHhccCCcEEecCcchhhcccc-------CCccccce--eeccCchHHHHhhhhhcC----CCCCEEEEec
Confidence 3446789999999999999999 77655431 24455544 489999999999999874 7889999999
Q ss_pred CCCcccc-chhhhHHhh
Q psy12573 89 DSAFGFS-GMELETLAV 104 (315)
Q Consensus 89 ~g~~~~a-G~Dl~~~~~ 104 (315)
||.++++ .++|.+..+
T Consensus 430 DG~f~~~g~~eL~tav~ 446 (595)
T TIGR03336 430 DSTFFHTGIPGLINAVY 446 (595)
T ss_pred cchhhhcCHHHHHHHHH
Confidence 9998887 588887654
No 272
>KOG1184|consensus
Probab=98.21 E-value=1.6e-06 Score=78.79 Aligned_cols=94 Identities=21% Similarity=0.280 Sum_probs=82.6
Q ss_pred CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573 5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83 (315)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v 83 (315)
.+.++++..+++.++..+.++++++.+ |.+++.+.+ +..|...-++....|+++||++|+.|+.+++. ++.|+
T Consensus 363 ~~~~l~~~~~~~~~~~~l~~~d~v~~ETG~S~F~~~~--~~fP~g~~~~~q~~wgsIG~svga~lG~a~a~----~e~rv 436 (561)
T KOG1184|consen 363 PNAPLRQEWMWNHIQKFLSSGDVVIAETGDSWFGINQ--TKFPKGCGYESQMQWGSIGWSVGATLGYAQAA----PEKRV 436 (561)
T ss_pred CcchhhHHHHHHHHHhhcCCCceEEEecccceeccee--eccccccceEEEEEEeeccccchhhhhhhhcc----CCceE
Confidence 457799999999999999999998888 777655544 67899999999999999999999999999986 77899
Q ss_pred EEEEcCCCccccchhhhHHhh
Q psy12573 84 VCVQGDSAFGFSGMELETLAV 104 (315)
Q Consensus 84 vvl~g~g~~~~aG~Dl~~~~~ 104 (315)
|++.|||.++...+++.++.+
T Consensus 437 ilfiGDGs~qlTvQeiStmir 457 (561)
T KOG1184|consen 437 ILFIGDGSFQLTVQEISTMIR 457 (561)
T ss_pred EEEecCccceeeHHHHHHHHh
Confidence 999999999999999988764
No 273
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.14 E-value=2.7e-05 Score=67.79 Aligned_cols=68 Identities=24% Similarity=0.383 Sum_probs=52.6
Q ss_pred CCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCc-cccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCcc-ccchh
Q psy12573 22 IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFG-TMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG-FSGME 98 (315)
Q Consensus 22 ~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~-~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~-~aG~D 98 (315)
.|+|.++++| |.+.. .+ ..++..+++ .||+++|.+++.+++. |+.+||+++|||.++ +.+.+
T Consensus 26 ~p~d~iivsdiGc~~~----------~~-~~l~~~~~~t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg~~e 90 (287)
T TIGR02177 26 DPEQVVVVSGIGCSAK----------TP-HYVNVNGFHGLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIGGNH 90 (287)
T ss_pred CCCCEEEEECCCcccc----------cC-CeEecCCcccccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhccHHH
Confidence 3678889999 76531 11 455556654 5899999999999985 899999999999976 57888
Q ss_pred hhHHhh
Q psy12573 99 LETLAV 104 (315)
Q Consensus 99 l~~~~~ 104 (315)
|.+..+
T Consensus 91 L~tA~r 96 (287)
T TIGR02177 91 FVAAGR 96 (287)
T ss_pred HHHHHH
Confidence 888765
No 274
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.14 E-value=0.00025 Score=60.69 Aligned_cols=153 Identities=14% Similarity=0.177 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573 117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV 196 (315)
Q Consensus 117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~ 196 (315)
....+++....+...|+|..++. .|.. .|.+ ++ ..+....+...+..+...+.|+|+.|.|.
T Consensus 85 rKa~R~~~lA~~~~lPvV~lvDt----pGa~--~g~~----aE--------~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 85 RKALRLMKQAEKFGRPVVTFINT----AGAY--PGVG----AE--------ERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEC----CCcC--CCHh----HH--------hccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 34455666677889999998886 2321 1211 11 11344444555566778899999999999
Q ss_pred cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCC-CchHHH-HhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFC-STPAVA-LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN 274 (315)
Q Consensus 197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~-~~~~~~-l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~ 274 (315)
+.|||......||++++.+++.| ++.+ +..+.. +...--...+.+. ..+++.++.+.|+||++++..
T Consensus 147 ~~gGgA~a~~~~D~v~m~~~a~~-------~v~~pe~~a~il~~~~~~a~~aa~~----~~~~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 147 GGSGGALALAVADQVWMLENTMY-------AVLSPEGFASILWKDGSRATEAAEL----MKITAGELLEMGVVDKVIPEH 215 (256)
T ss_pred cCcHHHHHhhcCCEEEEecCceE-------EEcCHHHHHHHHhcCcccHHHHHHH----cCCCHHHHHHCCCCcEecCCC
Confidence 99999998899999999998554 4443 322222 2211111222222 267999999999999999752
Q ss_pred -hH-------HHHHHHHHHHHHHhCCHHHHHH
Q psy12573 275 -EE-------LESETKVLTSAILENSRSVLTL 298 (315)
Q Consensus 275 -~~-------~~~~~~~~~~~l~~~~~~a~~~ 298 (315)
.+ +.+...+....+...++..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 247 (256)
T PRK12319 216 GYFSSEIIDMIKKNLIEELAQLSQKPLEQLLE 247 (256)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 11 2233344445555555554433
No 275
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.04 E-value=7.2e-05 Score=64.87 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=88.5
Q ss_pred hCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCcccc-chh
Q psy12573 21 SIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GME 98 (315)
Q Consensus 21 ~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~a-G~D 98 (315)
.+|+|.+++.| |.+..+ ..+ ++.+ ...+.||+++|.+++..+.. |+.+||++.|||++++. +++
T Consensus 32 ~~p~d~ivvsdiG~~~~~-~~~-~~~~--------~~~~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~iG~~e 97 (280)
T PRK11869 32 LKPRQVVIVSGIGQAAKM-PHY-INVN--------GFHTLHGRAIPAATAVKATN----PELTVIAEGGDGDMYAEGGNH 97 (280)
T ss_pred CCCCCEEEEeCchHhhhH-HHH-ccCC--------CCCcccccHHHHHHHHHHHC----CCCcEEEEECchHHhhCcHHH
Confidence 45778999999 765542 222 2211 33467999999999999984 88999999999997766 788
Q ss_pred hhHHhhhccCchhHHHHHHHHHHHHHHHHc-CCCcEEE--EEeeEEecccchhccccChhhhhhhcCCCCcchh----hH
Q psy12573 99 LETLAVDKEGRPKLDEIFSTCSDLMLSILR-HPVPILA--IISGVAAAAGCQLVATCDLAIATTASKFSTPGYN----IL 171 (315)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~--~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~----~~ 171 (315)
|.++.+... + ..+..++|..+.+.. ...|.-. ... ...-.|. .....|+..++.. ++.+... ..
T Consensus 98 L~tA~r~nl--~---i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~-~~~p~g~-~~~~~D~~~lA~a--~G~~~va~~~~~~ 168 (280)
T PRK11869 98 LIHAIRRNP--D---ITVLVHNNQVYGLTKGQASPTTLKGFKT-PTQPWGV-FEEPFNPIALAIA--LDASFVARTFSGD 168 (280)
T ss_pred HHHHHHhCc--C---cEEEEEECHHHhhhcceecCCCCCCccc-ccCCCCc-cCCCCCHHHHHHH--CCCCEEEEeCCCC
Confidence 888875221 1 111111222222111 0101000 000 0000111 2223577766665 3433332 23
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 172 VSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 172 ~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
..++...+......+.|.+..|.-+|.-
T Consensus 169 ~~~l~~~i~~Al~~~Gp~lIeV~~pC~~ 196 (280)
T PRK11869 169 IEETKEILKEAIKHKGLAIVDIFQPCVS 196 (280)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 4556666667777888998888888875
No 276
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.00 E-value=0.00061 Score=59.84 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573 115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIIS 194 (315)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~ 194 (315)
.......++....+...|+|..++. .|. ..|.+ ++ .++....+...+..+.....|+|+.|.
T Consensus 136 g~rKa~R~m~lA~~f~lPIVtlvDT----pGa--~~G~~----aE--------~~G~~~aia~~l~~~a~~~VP~IsVIi 197 (319)
T PRK05724 136 GYRKALRLMKMAEKFGLPIITFIDT----PGA--YPGIG----AE--------ERGQSEAIARNLREMARLKVPIICTVI 197 (319)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeC----CCC--CCCHH----HH--------hccHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 3344556666677889999998875 222 11211 11 113444455566677899999999999
Q ss_pred cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573 195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN 274 (315)
Q Consensus 195 G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~ 274 (315)
|.+.|||......||++++.+.+. +++.+..+...+..+- ...+.+... ...+++.++.+.|+|+++++.+
T Consensus 198 Geg~sGGAla~~~aD~v~m~~~A~-------~svisPEg~a~Il~~~-~~~a~~aae-~~~ita~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 198 GEGGSGGALAIGVGDRVLMLEYST-------YSVISPEGCASILWKD-ASKAPEAAE-AMKITAQDLKELGIIDEIIPEP 268 (319)
T ss_pred CCccHHHHHHHhccCeeeeecCce-------EeecCHHHHHHHHhcC-chhHHHHHH-HcCCCHHHHHHCCCceEeccCC
Confidence 999888887666799999998844 4555433332222111 122333332 4568999999999999999742
Q ss_pred -----hHH-------HHHHHHHHHHHHhCCHHHHHHH
Q psy12573 275 -----EEL-------ESETKVLTSAILENSRSVLTLG 299 (315)
Q Consensus 275 -----~~~-------~~~~~~~~~~l~~~~~~a~~~~ 299 (315)
.+. .+...+-...+.+.++..+...
T Consensus 269 ~gga~~~~~~~~~~l~~~i~~~l~~l~~~~~~~l~~~ 305 (319)
T PRK05724 269 LGGAHRDPEAAAAALKEALLEALAELKGLSPEELLER 305 (319)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 122 2333344455556666554443
No 277
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=97.99 E-value=6.5e-05 Score=67.81 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
...+..+++-.+++..+++++|+.. |+-....-++ ++...|.++--...|.+|||++...|+..++. |+..|++
T Consensus 393 t~ptq~~vigav~~~~~~~svvvcAAGsLPGdLhkL-W~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~----pdreV~v 467 (617)
T COG3962 393 TLPTQTQVIGAVQRTISDDSVVVCAAGSLPGDLHKL-WRAGVPGTYHLEYGFSCMGYEIAGGLGAKAAE----PDREVYV 467 (617)
T ss_pred cCccchhHHHHHHhhcCCCcEEEEeCCCCcHHHHHH-hccCCCCceeeeecccccccccccccccccCC----CCCeEEE
Confidence 4456678999999999999999887 8877778887 88888889988889999999999999999664 7889999
Q ss_pred EEcCCCccccchhhhHHh
Q psy12573 86 VQGDSAFGFSGMELETLA 103 (315)
Q Consensus 86 l~g~g~~~~aG~Dl~~~~ 103 (315)
+.|||++.+.-.+|.+..
T Consensus 468 mVGDGSymMlnSEL~Tsv 485 (617)
T COG3962 468 MVGDGSYMMLNSELATSV 485 (617)
T ss_pred EEcccchhhhhHHHHHHH
Confidence 999999888777776654
No 278
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.96 E-value=0.00052 Score=61.84 Aligned_cols=156 Identities=12% Similarity=0.152 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
.....+++....+...|+|..++. .|. ..|.+- +.++....+...+..+..+..|+|+.|.|
T Consensus 207 yRKAlR~mklAekf~lPIVtLVDT----pGA--~pG~~A------------Ee~Gqa~aIAr~l~ams~l~VPiISVViG 268 (431)
T PLN03230 207 YRKALRFMRHAEKFGFPILTFVDT----PGA--YAGIKA------------EELGQGEAIAFNLREMFGLRVPIIATVIG 268 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeC----CCc--CCCHHH------------HHHhHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 334455666677889999998875 222 122111 11133344445566778899999999999
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCC-CCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~-~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
.+.+||......||++++.+.+++ ++. |+..+ ..+....-...+.+ .-.+++.++++.|+||++++.
T Consensus 269 eGgSGGAlalg~aD~VlMle~A~y-------sVisPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 269 EGGSGGALAIGCGNRMLMMENAVY-------YVASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred CCCcHHHHHhhcCCEEEEecCCEE-------EecCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEeccC
Confidence 997777666667999999998544 444 33322 22222211222223 237899999999999999975
Q ss_pred c-----hH-------HHHHHHHHHHHHHhCCHHHHHHHH
Q psy12573 274 N-----EE-------LESETKVLTSAILENSRSVLTLGK 300 (315)
Q Consensus 274 ~-----~~-------~~~~~~~~~~~l~~~~~~a~~~~k 300 (315)
+ .+ +.+...+....|...++..+...+
T Consensus 338 p~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~~~R 376 (431)
T PLN03230 338 PLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELLQDR 376 (431)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2 11 223344445566677766655443
No 279
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.94 E-value=0.00081 Score=59.05 Aligned_cols=156 Identities=16% Similarity=0.155 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
.....+++....+...|+|..++. .|.. .| .-++ .++....+...+..+.....|+|+.|.|
T Consensus 140 ~rKa~Rlm~lA~~f~lPIItlvDT----pGA~--~G----~~AE--------~~G~~~aiar~l~~~a~~~VP~IsVViG 201 (322)
T CHL00198 140 YRKALRLMKHANKFGLPILTFIDT----PGAW--AG----VKAE--------KLGQGEAIAVNLREMFSFEVPIICTIIG 201 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeC----CCcC--cC----HHHH--------HHhHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 344556666777889999998876 2321 12 1111 1133333444555567889999999999
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCC-CCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN 274 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~-~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~ 274 (315)
.+.|||......||++++.+.++| ++. |+..+..+-+ -..++.+. -..-.+++++.++.|+|+.+++.+
T Consensus 202 eggsGGAlal~~aD~V~m~e~a~~-------sVisPEg~a~Il~~--d~~~a~~a-A~~~~ita~dL~~~giiD~ii~Ep 271 (322)
T CHL00198 202 EGGSGGALGIGIGDSIMMLEYAVY-------TVATPEACAAILWK--DSKKSLDA-AEALKITSEDLKVLGIIDEIIPEP 271 (322)
T ss_pred cccHHHHHhhhcCCeEEEeCCeEE-------EecCHHHHHHHHhc--chhhHHHH-HHHcCCCHHHHHhCCCCeEeccCC
Confidence 998888777777999999999555 444 3332222211 11222232 223578999999999999999742
Q ss_pred -----hH-------HHHHHHHHHHHHHhCCHHHHHHH
Q psy12573 275 -----EE-------LESETKVLTSAILENSRSVLTLG 299 (315)
Q Consensus 275 -----~~-------~~~~~~~~~~~l~~~~~~a~~~~ 299 (315)
.+ +.+...+....+...++..+...
T Consensus 272 ~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~~~l~~~ 308 (322)
T CHL00198 272 IGGAQADPASASKILKKKLIRQLDFLKILSPSELKAH 308 (322)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11 22333444555666666554443
No 280
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.94 E-value=0.00075 Score=59.24 Aligned_cols=156 Identities=16% Similarity=0.194 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
.....+++....+...|+|..++. .| +..|.+ . +..+....+...+..+.....|+|+.|.|
T Consensus 137 ~rKa~R~m~lA~~f~iPvVtlvDT----pG--a~~g~~----a--------E~~G~~~aia~~l~a~s~~~VP~IsVViG 198 (316)
T TIGR00513 137 YRKALRLMKMAERFKMPIITFIDT----PG--AYPGIG----A--------EERGQSEAIARNLREMARLGVPVICTVIG 198 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEC----CC--CCCCHH----H--------HHHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 344556666677889999998886 23 211211 1 11133344445566677889999999999
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc-
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN- 274 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~- 274 (315)
.+.+||......||++++.+.+.+ ++.+..+...+..+- ...+.+... -..+++.++.+.|+||.+++.+
T Consensus 199 eggsGGAla~~~aD~v~m~~~a~~-------sVisPEg~a~Il~kd-~~~a~~aae-~~~~ta~~l~~~G~iD~II~ep~ 269 (316)
T TIGR00513 199 EGGSGGALAIGVGDKVNMLEYSTY-------SVISPEGCAAILWKD-ASKAPKAAE-AMKITAPDLKELGLIDSIIPEPL 269 (316)
T ss_pred ccccHHHhhhccCCEEEEecCceE-------EecCHHHHHHHhccc-hhhHHHHHH-HccCCHHHHHHCCCCeEeccCCC
Confidence 998888776667999999998444 555333322211111 111222221 2567899999999999999742
Q ss_pred ----hH-------HHHHHHHHHHHHHhCCHHHHHH
Q psy12573 275 ----EE-------LESETKVLTSAILENSRSVLTL 298 (315)
Q Consensus 275 ----~~-------~~~~~~~~~~~l~~~~~~a~~~ 298 (315)
.+ +.+...+....+.+.++..+..
T Consensus 270 ~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~ 304 (316)
T TIGR00513 270 GGAHRNPLAAAASLKEQLLADLATLDQLSTEELKN 304 (316)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 11 2233344455556666655443
No 281
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=97.86 E-value=2.4e-05 Score=64.22 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEE--cCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEe---e
Q psy12573 65 GFALAAALYCNHYAPGKRVVCVQ--GDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIIS---G 139 (315)
Q Consensus 65 ~~~l~~~l~~~~~d~~~~vvvl~--g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~---G 139 (315)
...+..+|..++.++ .+.|+|. +-| +++... ..++..+..+++|+|++++ |
T Consensus 15 ~~~l~~~l~~a~~~~-~~~vvl~InSpG------G~v~~~-----------------~~i~~~l~~~~kPvia~v~~~~G 70 (187)
T cd07020 15 ADYLERAIDQAEEGG-ADALIIELDTPG------GLLDST-----------------REIVQAILASPVPVVVYVYPSGA 70 (187)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEEECCC------CCHHHH-----------------HHHHHHHHhCCCCEEEEEecCCC
Confidence 377888888887665 5666653 333 333222 1234455678999999999 9
Q ss_pred EEecccchhccccChhhhhhhcCCCCcchh-hHHHH-------------HHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573 140 VAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVST-------------CSDLMLSILRHPVPILAIISGVAAAAGCQLV 205 (315)
Q Consensus 140 ~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~ 205 (315)
.+.|+|..+.++||++++.+.++|+..+.. ..... .......+ +...|....--.+++
T Consensus 71 ~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~G~~~~~a~~~l 142 (187)
T cd07020 71 RAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSL--------AELRGRNAEWAEKAV 142 (187)
T ss_pred CchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHH--------HHHcCCCHHHHHHHH
Confidence 999999999999999999999888775554 21110 01111111 112255322226788
Q ss_pred hhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 206 ATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+.+.+..+.++ .++|++...
T Consensus 143 ~~g~~~~a~eA-------~~~Glvd~v 162 (187)
T cd07020 143 RESLSLTAEEA-------LKLGVIDLI 162 (187)
T ss_pred HcCCeecHHHH-------HHcCCcccc
Confidence 89999999999 888888665
No 282
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.82 E-value=0.00095 Score=64.11 Aligned_cols=156 Identities=12% Similarity=0.128 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573 116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG 195 (315)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G 195 (315)
.....+++....+...|+|..++. .|... |.... ..+....+...+..+.....|+|+.|.|
T Consensus 228 yRKAlRlmkLAekfgLPIVtLVDT----pGA~p--G~~AE------------e~Gq~~aIArnl~amasl~VP~ISVViG 289 (762)
T PLN03229 228 YRKALRMMYYADHHGFPIVTFIDT----PGAYA--DLKSE------------ELGQGEAIAHNLRTMFGLKVPIVSIVIG 289 (762)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEC----CCcCC--CchhH------------HHhHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 334455666677889999998886 23221 11111 1133334445566667889999999999
Q ss_pred ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCC-CCchHH-HHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAV-ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~-~~~~~~-~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
.+.|||......||++++.+.++| ++. |.+.+. .+...--...|. ..-.+++++.++.|+|+.+++.
T Consensus 290 eggSGGAlA~g~aD~VlMle~A~~-------sVisPEgaAsILwkd~~~A~eAA----e~lkiTa~dL~~lGiiD~IIpE 358 (762)
T PLN03229 290 EGGSGGALAIGCANKLLMLENAVF-------YVASPEACAAILWKSAKAAPKAA----EKLRITAQELCRLQIADGIIPE 358 (762)
T ss_pred CcchHHHHHhhcCCEEEEecCCeE-------EecCHHHHHHHHhcCcccHHHHH----HHcCCCHHHHHhCCCCeeeccC
Confidence 999889888888999999988544 444 333222 222211112222 2347899999999999999975
Q ss_pred c-----hH-------HHHHHHHHHHHHHhCCHHHHHHHH
Q psy12573 274 N-----EE-------LESETKVLTSAILENSRSVLTLGK 300 (315)
Q Consensus 274 ~-----~~-------~~~~~~~~~~~l~~~~~~a~~~~k 300 (315)
+ .+ +.+........+...++..+...+
T Consensus 359 p~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~R 397 (762)
T PLN03229 359 PLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKHR 397 (762)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2 11 223334445556666766655444
No 283
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=97.81 E-value=2.6e-05 Score=72.73 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccC-CCcccccCCCCccccchHHHHHHHHH
Q psy12573 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNN-LPRHRLDAGTFGTMGVGLGFALAAAL 72 (315)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~-~~~n~~~~~~~~~mg~~~~~~l~~~l 72 (315)
+.|++|+++++.|++.+|+|.+|+.| |.+..|..++ +... +++.++++..+++||+++|.++++++
T Consensus 364 ~~~i~p~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 364 EEPLSELSLARALSQLLPEGAALFVGNSMPIRDLDTF-AQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred cCCccHHHHHHHHHHhCCCCCeEEEECCHHHHHHHhc-CCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 45799999999999999999999999 7777887776 5555 68999999999999999999999875
No 284
>KOG1682|consensus
Probab=97.79 E-value=9.7e-06 Score=65.04 Aligned_cols=99 Identities=38% Similarity=0.593 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573 115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII 193 (315)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v 193 (315)
.|+...+.+..|.+.|.|+|+-+||++...|+.+.+.||+.++..+++|..|... +++-.-.+.. ..+..|.++
T Consensus 110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA-laRavpRkv---- 184 (287)
T KOG1682|consen 110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA-LARAVPRKV---- 184 (287)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh-HhhhcchhH----
Confidence 3556677888899999999999999999999999999999999999999999988 7654332221 233445544
Q ss_pred ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 194 SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 194 ~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
+ ++|.+++..+.++++ ..-|++..+
T Consensus 185 -----a--~~ML~Tg~Pi~~eeA-------l~sGlvskv 209 (287)
T KOG1682|consen 185 -----A--AYMLMTGLPITGEEA-------LISGLVSKV 209 (287)
T ss_pred -----H--HHHHHhCCCCchHHH-------HHhhhhhhc
Confidence 3 999999999999998 777777443
No 285
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=97.76 E-value=0.00026 Score=56.66 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=65.5
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCCCCCch-HH---------------HHh
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGIFCSTP-AV---------------ALT 238 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl~~~~~-~~---------------~l~ 238 (315)
..+..+..+++|+++.+.|.|.++|..++++|| .+++.+.+++.+....-+...... .. .+.
T Consensus 49 ~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a 128 (162)
T cd07013 49 AIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYA 128 (162)
T ss_pred HHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788899999999999999999999999 588888888876543322211110 00 111
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccc
Q psy12573 239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRV 270 (315)
Q Consensus 239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v 270 (315)
+.-| ....++.+..+.-++++||+++|++|++
T Consensus 129 ~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 129 HKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 1122 3456666777777899999999999974
No 286
>PRK10949 protease 4; Provisional
Probab=97.74 E-value=0.00056 Score=66.03 Aligned_cols=105 Identities=16% Similarity=0.250 Sum_probs=68.6
Q ss_pred HHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCC------------ccCCCCCCc-------------
Q psy12573 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPG------------ARHGIFCST------------- 232 (315)
Q Consensus 178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe------------~~~Gl~~~~------------- 232 (315)
.+..++...|||++.+.+.+.-||..++.+||.++|.+.+..|--. -++|+-.+.
T Consensus 388 ~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~ 467 (618)
T PRK10949 388 ELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITK 467 (618)
T ss_pred HHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccC
Confidence 3444566789999999999999999999999999999976543311 123332111
Q ss_pred ---hH------------H-HHh------hhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHHH
Q psy12573 233 ---PA------------V-ALT------RKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284 (315)
Q Consensus 233 ---~~------------~-~l~------~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~ 284 (315)
.. + .+. |.+...... -+..|+.+++++|++.||||++-.- ++..+.+.++
T Consensus 468 ~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~-~ia~Grv~tg~~A~~~GLVD~lG~~-~~ai~~a~~~ 539 (618)
T PRK10949 468 ALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQID-KIAQGHVWTGQDAKANGLVDSLGDF-DDAVAKAAEL 539 (618)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH-HHhcCCcccHHHHHHcCCCccCCCH-HHHHHHHHHH
Confidence 00 0 000 111122222 3567899999999999999998665 6665555554
No 287
>KOG0016|consensus
Probab=97.68 E-value=3.6e-05 Score=64.36 Aligned_cols=94 Identities=21% Similarity=0.340 Sum_probs=80.9
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
......+...+||.|+.|||.+.|-|..+-.-||+.++.+.+.|..|... |..|+....+ .+|+.+ |.+.
T Consensus 97 ~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~----t~p~im-----G~~~ 167 (266)
T KOG0016|consen 97 SCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSV----TLPKIM-----GSAS 167 (266)
T ss_pred HHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceee----eehHhh-----chhh
Confidence 34566788999999999999999999999999999999999999999999 9888877654 566666 9999
Q ss_pred hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCC
Q psy12573 199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCS 231 (315)
Q Consensus 199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~ 231 (315)
+ -++++.|..+.|.++ ..-|++..
T Consensus 168 A--~E~ll~~~kltA~Ea-------~~~glVsk 191 (266)
T KOG0016|consen 168 A--NEMLLFGEKLTAQEA-------CEKGLVSK 191 (266)
T ss_pred H--HHHHHhCCcccHHHH-------HhcCchhh
Confidence 8 999999999999999 55566643
No 288
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.58 E-value=0.00029 Score=58.40 Aligned_cols=96 Identities=22% Similarity=0.167 Sum_probs=65.9
Q ss_pred HHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCCCCCc-h----H-----------HHHhh
Q psy12573 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGIFCST-P----A-----------VALTR 239 (315)
Q Consensus 178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl~~~~-~----~-----------~~l~~ 239 (315)
.+..+...+.|+++.+.|.|.+.|..++++++ .+++.+.+++++....-+..... . . ..+.+
T Consensus 81 I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~ 160 (200)
T PRK00277 81 IYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAE 160 (200)
T ss_pred HHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777889999999999999999999865 57777787776655432221100 0 0 01222
Q ss_pred hcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 240 KVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 240 ~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
.-| .....+.+....-++++||+++|++++++.+
T Consensus 161 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 161 HTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 222 2455666666778999999999999999875
No 289
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.58 E-value=0.00052 Score=56.62 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=71.5
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCCCchHH----------------HHh
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFCSTPAV----------------ALT 238 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~~~~~~----------------~l~ 238 (315)
..+..+...+.||++.+.|.|...|..++++||. |++.+.+++.+....-++....... .+.
T Consensus 72 aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a 151 (197)
T PRK14512 72 AIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIA 151 (197)
T ss_pred HHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677889999999999999999999999986 8888888886644432221111100 011
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHH
Q psy12573 239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELES 279 (315)
Q Consensus 239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~ 279 (315)
..-| .....+++.....++++||+++|++++++++.+++.+
T Consensus 152 ~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~~ 194 (197)
T PRK14512 152 KETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELEE 194 (197)
T ss_pred HHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhHh
Confidence 2222 2355666666677999999999999999987455543
No 290
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.55 E-value=0.00029 Score=58.63 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=71.1
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccC-CCCCCchH-----------------HH
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARH-GIFCSTPA-----------------VA 236 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~-Gl~~~~~~-----------------~~ 236 (315)
..+..+..++.|++..+.|.|...|..++++|| .|++.+.+.|.+..... |-.-+... ..
T Consensus 84 ~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ 163 (207)
T PRK12553 84 AIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERI 163 (207)
T ss_pred HHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778889999999999999999999999 48999999988866543 21111000 01
Q ss_pred HhhhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 237 LTRKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 237 l~~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
+++..| .....+++..+..++++||+++|++++++.+
T Consensus 164 ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 164 LAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence 222222 3466667777888999999999999999976
No 291
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=97.42 E-value=0.0009 Score=54.07 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=69.4
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCCCCCchHH----------------HHh
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGIFCSTPAV----------------ALT 238 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl~~~~~~~----------------~l~ 238 (315)
..+..+...+.|+.+.+.|.|...|..++++|| .+++.+.+.|.+.+...+........ .+.
T Consensus 58 ~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 137 (171)
T cd07017 58 AIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILA 137 (171)
T ss_pred HHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777899999999999999999999999 79999999998877765544221100 111
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccc
Q psy12573 239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRV 270 (315)
Q Consensus 239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v 270 (315)
+..| .....+++....-++++||+++|+++++
T Consensus 138 ~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 138 KHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 2222 2355666767788999999999999975
No 292
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.25 E-value=0.015 Score=50.19 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=49.7
Q ss_pred CcEEEEEccc--cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCH--HHHHHHHhcCCCCCHHHHH
Q psy12573 187 VPILAIISGV--AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPL--GVVRSMTITGIPISAQDAY 262 (315)
Q Consensus 187 kpvIa~v~G~--~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~--~~a~~~~~~g~~~~a~~a~ 262 (315)
.|+|+.+.|+ |.||+...+..||++++++.+++++ . +...+....|. -..++--+.-+.+.....+
T Consensus 137 vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~-------a---GP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~ 206 (274)
T TIGR03133 137 VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGL-------S---GPEVIEQEAGVEEFDSRDRALVWRTTGGKHRF 206 (274)
T ss_pred CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEec-------c---CHHHHHHhcCCCccCHHHhcccccccchHhHh
Confidence 8999999999 8999999999999999999855543 2 11111222221 0111111122334555667
Q ss_pred HcCccccccCC
Q psy12573 263 NAGLITRVVSS 273 (315)
Q Consensus 263 ~~Glv~~v~~~ 273 (315)
..|.++.++++
T Consensus 207 ~sG~~D~~v~d 217 (274)
T TIGR03133 207 LSGDADVLVED 217 (274)
T ss_pred hcccceEEeCC
Confidence 78999999986
No 293
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.18 E-value=0.011 Score=50.41 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=49.5
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST 232 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~ 232 (315)
...+.+.+.+.++.+.|..+|.-+|..++++||-+++.+.+.+|--+..+|-.|..
T Consensus 109 ~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 109 QIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA 164 (285)
T ss_pred HHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence 34556778899999999999999999999999999999999999988888877654
No 294
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.17 E-value=0.00062 Score=55.64 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=68.9
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCCCchHH----------------HHh
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFCSTPAV----------------ALT 238 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~~~~~~----------------~l~ 238 (315)
..+..+..++.|+...+.|.|...|..++++|+. |++.+.+.|.+.+...+........ .+.
T Consensus 65 ~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~ 144 (182)
T PF00574_consen 65 AIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYA 144 (182)
T ss_dssp HHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4666788899999999999999999999999999 7999999998887765544211100 111
Q ss_pred hh--cCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 239 RK--VPLGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 239 ~~--~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
.. .......+++....-++++||+++|++|+++.+
T Consensus 145 ~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 145 ERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 11 122355555555566899999999999999764
No 295
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.16 E-value=0.046 Score=47.87 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=65.3
Q ss_pred HHhcCCCcEEEEEccccchhhhH-HHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573 181 SILRHPVPILAIISGVAAAAGCQ-LVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQ 259 (315)
Q Consensus 181 ~l~~~~kpvIa~v~G~~~g~G~~-l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~ 259 (315)
.+.....|.|+.+.|++.||+.. .++.+|++++.+.+.+++ ... ..+.+.++... .-+.-+++
T Consensus 189 ~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~-------aGp---rvie~~~~e~l------pe~~~~ae 252 (292)
T PRK05654 189 RLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGF-------AGP---RVIEQTVREKL------PEGFQRAE 252 (292)
T ss_pred HHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEe-------cCH---HHHHhhhhhhh------hhhhcCHH
Confidence 44566799999999999998765 466799999998855544 311 11111111111 01123566
Q ss_pred HHHHcCccccccCCchHHHHHHHHHHHHHHhCCH
Q psy12573 260 DAYNAGLITRVVSSNEELESETKVLTSAILENSR 293 (315)
Q Consensus 260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~ 293 (315)
-+.+.|+||.+++. .++.+...++.+.+..+++
T Consensus 253 ~~~~~G~vD~Vv~~-~e~r~~l~~~L~~~~~~~~ 285 (292)
T PRK05654 253 FLLEHGAIDMIVHR-RELRDTLASLLALHTKQPA 285 (292)
T ss_pred HHHhCCCCcEEECH-HHHHHHHHHHHHHHhcCCC
Confidence 67899999999999 9999998888887765543
No 296
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.12 E-value=0.079 Score=46.24 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=63.8
Q ss_pred HHhcCCCcEEEEEccccchhhhH-HHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573 181 SILRHPVPILAIISGVAAAAGCQ-LVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQ 259 (315)
Q Consensus 181 ~l~~~~kpvIa~v~G~~~g~G~~-l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~ 259 (315)
.+.....|.|+.+.|++.||+.. .++.+|++++.+.+.+++...+ .+.+.++... .-+.-+++
T Consensus 188 ~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr----------Vie~ti~e~l------pe~~q~ae 251 (285)
T TIGR00515 188 KMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR----------VIEQTVREKL------PEGFQTSE 251 (285)
T ss_pred HHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH----------HHHHHhcCcc------chhcCCHH
Confidence 44566899999999999998766 4569999999999555442211 1111122111 01123556
Q ss_pred HHHHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573 260 DAYNAGLITRVVSSNEELESETKVLTSAILEN 291 (315)
Q Consensus 260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~ 291 (315)
-+.+.|+||.+++. .++.+...++.+.+...
T Consensus 252 ~~~~~G~vD~iv~~-~~~r~~l~~~L~~~~~~ 282 (285)
T TIGR00515 252 FLLEHGAIDMIVHR-PEMKKTLASLLAKLQNL 282 (285)
T ss_pred HHHhCCCCcEEECc-HHHHHHHHHHHHHHhhC
Confidence 67889999999999 99988888887765443
No 297
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.10 E-value=0.00058 Score=54.17 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=60.8
Q ss_pred HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCcc------------CCCC--------------CCc-hH
Q psy12573 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR------------HGIF--------------CST-PA 234 (315)
Q Consensus 182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~------------~Gl~--------------~~~-~~ 234 (315)
..+..|||++.+.+.+..+|..++.+||.+++.+.+.++...+. +|+- +.. .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35689999999999999789999999999999999877663321 2211 000 00
Q ss_pred --H--HHh-----------hh------cCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHH
Q psy12573 235 --V--ALT-----------RK------VPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283 (315)
Q Consensus 235 --~--~l~-----------~~------~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~ 283 (315)
. .+. .. +..... +-+..|..+++++|++.||||++-.. +++.+...+
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v-~~~~~~~~~~~~~A~~~GLiD~i~~~-~~~~~~l~~ 149 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDV-EEIADGGVFTAQQALELGLIDEIGTF-DEAIARLAK 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHH-HCHHCCHEEEHHHHHHTTSSSEETSH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH-HHHHhhccccHHHHHHcCchhhcCCH-HHHHHHHHH
Confidence 0 000 00 111122 22467888999999999999999766 666555444
No 298
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.09 E-value=0.06 Score=45.81 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCCcEEEEEccccchhh-hHHHhhcCeeeeeCCceeeCCCccCCCC-CCchHHHHhhhcCHHHHHHHHhcC
Q psy12573 176 SDLMLSILRHPVPILAIISGVAAAAG-CQLVATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPLGVVRSMTITG 253 (315)
Q Consensus 176 ~~~~~~l~~~~kpvIa~v~G~~~g~G-~~l~l~~d~~~a~~~a~~~~pe~~~Gl~-~~~~~~~l~~~~g~~~a~~~~~~g 253 (315)
...+..+.....|.|+.+..+..||= ...++.+|+.+|++. ..+|+. |.+.-...-..++..
T Consensus 185 saAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~-------AlIGFAGpRVIEQTire~LPeg--------- 248 (294)
T COG0777 185 SAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPG-------ALIGFAGPRVIEQTIREKLPEG--------- 248 (294)
T ss_pred HHHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcc-------cccccCcchhhhhhhcccCCcc---------
Confidence 34566777889999999999998742 458889999999998 555654 222112222222211
Q ss_pred CCCCHHHHHHcCccccccCCchHHHHHHHHHHHHHHhCCH
Q psy12573 254 IPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293 (315)
Q Consensus 254 ~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~ 293 (315)
--+++-.++.|+||.+++. .++......+...+...++
T Consensus 249 -fQ~aEfLlehG~iD~iv~R-~elr~tla~ll~~~~~~~~ 286 (294)
T COG0777 249 -FQTAEFLLEHGMIDMIVHR-DELRTTLASLLAKLTPQPA 286 (294)
T ss_pred -hhhHHHHHHcCCceeeecH-HHHHHHHHHHHHHhCCCCC
Confidence 1244556899999999999 9999998888888776554
No 299
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.07 E-value=0.0041 Score=51.98 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=69.9
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCC---CCch--HH-----------HHh
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIF---CSTP--AV-----------ALT 238 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~---~~~~--~~-----------~l~ 238 (315)
..+..+...+.||...+.|.|...|.-|+++||. |++.+.+++.+....-|.. .+.. .. .++
T Consensus 103 aIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya 182 (221)
T PRK14514 103 GIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIA 182 (221)
T ss_pred HHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888999999999999999999999997 8899999987766543332 1110 00 111
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
+.-| .....+.+....-++++||+++|++++++..
T Consensus 183 ~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 183 DHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence 2222 2355566666777999999999999999864
No 300
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.07 E-value=0.043 Score=47.79 Aligned_cols=83 Identities=13% Similarity=0.102 Sum_probs=58.9
Q ss_pred cCCCcEEEEEccccchhhhHH-HhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCC-----CC
Q psy12573 184 RHPVPILAIISGVAAAAGCQL-VATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIP-----IS 257 (315)
Q Consensus 184 ~~~kpvIa~v~G~~~g~G~~l-~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~-----~~ 257 (315)
.-..|.|+.+.|++.||+... ++.||++++.+.+ .+|+. |++..++. +|+. -+
T Consensus 205 ~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A-------~IgfA------------GPrVIe~t--~ge~lpe~fq~ 263 (296)
T CHL00174 205 NKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNA-------YIAFA------------GKRVIEQT--LNKTVPEGSQA 263 (296)
T ss_pred cCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCe-------EEEee------------CHHHHHHh--cCCcCCccccc
Confidence 457899999999999998876 5569999998884 34443 22222221 1222 24
Q ss_pred HHHHHHcCccccccCCchHHHHHHHHHHHHH
Q psy12573 258 AQDAYNAGLITRVVSSNEELESETKVLTSAI 288 (315)
Q Consensus 258 a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l 288 (315)
++-.++.|+||.+++. .++.+...++.+-+
T Consensus 264 ae~l~~~G~vD~iV~r-~~lr~~l~~ll~~~ 293 (296)
T CHL00174 264 AEYLFDKGLFDLIVPR-NLLKGVLSELFQLH 293 (296)
T ss_pred HHHHHhCcCceEEEcH-HHHHHHHHHHHHhh
Confidence 5667899999999999 88888877776543
No 301
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.07 E-value=0.0043 Score=51.26 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=70.8
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCCCCCchHH-----------------HH
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGIFCSTPAV-----------------AL 237 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl~~~~~~~-----------------~l 237 (315)
..+..+...+.||...+.|.|.+.|.-++++|+ .|++.+.++|.+.....|...+-... .+
T Consensus 79 aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~y 158 (200)
T CHL00028 79 AIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVY 158 (200)
T ss_pred HHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999999999999999999999 58999999998877655522111100 01
Q ss_pred hhhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 238 TRKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 238 ~~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
.+.-| .....+.+....-++++||+++|++|+++.+
T Consensus 159 a~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 159 AQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeec
Confidence 11112 2355566666677999999999999999875
No 302
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.02 E-value=0.033 Score=48.76 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=31.5
Q ss_pred CcEEEEEccc--cchhhhHHHhhcCeeeeeCCceeeC
Q psy12573 187 VPILAIISGV--AAAAGCQLVATCDLAIATTASKFST 221 (315)
Q Consensus 187 kpvIa~v~G~--~~g~G~~l~l~~d~~~a~~~a~~~~ 221 (315)
.|+|+.+.|+ |.||+...+..||++++++.+++++
T Consensus 146 VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 146 VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 9999999999 9999999999999999999855443
No 303
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=96.95 E-value=0.0075 Score=49.58 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=66.3
Q ss_pred HHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCC---CCCch--HH-----------HHhh
Q psy12573 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGI---FCSTP--AV-----------ALTR 239 (315)
Q Consensus 178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl---~~~~~--~~-----------~l~~ 239 (315)
.+..+...+.|+...+.|.|...|.-++++++ .|++.+.++|.+.+...|. ..+.. .. .+.+
T Consensus 76 I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~ 155 (191)
T TIGR00493 76 IYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILAN 155 (191)
T ss_pred HHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777888999999999998877 4899999999886654332 22211 00 1222
Q ss_pred hcC--HHHHHHHHhcCCCCCHHHHHHcCccccccC
Q psy12573 240 KVP--LGVVRSMTITGIPISAQDAYNAGLITRVVS 272 (315)
Q Consensus 240 ~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~ 272 (315)
+-| .....+.+..+..++++||+++|++++++.
T Consensus 156 ~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 156 HTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 323 245666677777899999999999999874
No 304
>PRK11778 putative inner membrane peptidase; Provisional
Probab=96.92 E-value=0.0049 Score=54.69 Aligned_cols=101 Identities=20% Similarity=0.199 Sum_probs=67.1
Q ss_pred HHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCcc------------CCCCCCc---------------
Q psy12573 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR------------HGIFCST--------------- 232 (315)
Q Consensus 180 ~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~------------~Gl~~~~--------------- 232 (315)
.+++...||+++.+.+.+.-||..+++.||.+++.+.+..|...+. +|+-...
T Consensus 148 ~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~ 227 (330)
T PRK11778 148 QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGE 227 (330)
T ss_pred HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCC
Confidence 4556778999999999999999999999999999998876542221 2221000
Q ss_pred --hH--H-----------HHhhhcCHH---HHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHH
Q psy12573 233 --PA--V-----------ALTRKVPLG---VVRSMTITGIPISAQDAYNAGLITRVVSSNEELESET 281 (315)
Q Consensus 233 --~~--~-----------~l~~~~g~~---~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~ 281 (315)
.. . .+...+... ...+-+.+|+.+++++|++.||||++-.. +++....
T Consensus 228 ~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~-dd~i~~~ 293 (330)
T PRK11778 228 NTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTS-DDYLLEL 293 (330)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCH-HHHHHHH
Confidence 00 0 000001000 11334567899999999999999999877 6665433
No 305
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.92 E-value=0.0067 Score=49.92 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=69.4
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCC---CCch--HH-----------HHh
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIF---CSTP--AV-----------ALT 238 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~---~~~~--~~-----------~l~ 238 (315)
..+..+...+.||...+.|.|...|.-++++|+. |++.+.+++.+....-|.. .+.. .. .+.
T Consensus 74 aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya 153 (196)
T PRK12551 74 GIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELS 153 (196)
T ss_pred HHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888899999999999999999999986 7889999987766543322 1110 00 112
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
++-| .....+.+....-++++||+++|++++++..
T Consensus 154 ~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 154 ERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred HHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEecc
Confidence 2222 2355666666677999999999999999876
No 306
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=96.87 E-value=0.0083 Score=49.50 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=70.6
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCC---CCch--HH-----------HHh
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIF---CSTP--AV-----------ALT 238 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~---~~~~--~~-----------~l~ 238 (315)
..+..+...+.||...+.|.|...|.-++++||. |++.+.+++.+.....|.- ++.- +. .+.
T Consensus 76 aIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya 155 (201)
T PRK14513 76 AIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYH 155 (201)
T ss_pred HHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778888999999999999999999999996 8999999997766654432 1110 00 011
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
+.-| .....+.+....-++++||+++|++++++..
T Consensus 156 ~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 156 RHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred HHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEecc
Confidence 2222 2355566666677999999999999999876
No 307
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=96.76 E-value=0.00025 Score=57.71 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=63.8
Q ss_pred HHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHH------HHH-HHHHHHHhcCCCcEEEEEcccc
Q psy12573 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILV------STC-SDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 126 ~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~------~~~-~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
+.+.+||+|++++|.+.|+|..+++.||+.++.+.+.|+.+... +.. ... ..+...+.+. .|..
T Consensus 67 ~~~~~kpVia~v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~--------rg~~ 138 (177)
T cd07014 67 ARAAGKPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADN--------RHST 138 (177)
T ss_pred HHhCCCCEEEEECCchhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHh--------CCCC
Confidence 45679999999999999999999999999999999888877654 211 111 1111122111 1322
Q ss_pred chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch
Q psy12573 198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP 233 (315)
Q Consensus 198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~ 233 (315)
..--.+++..+....+.++ .+.|++....
T Consensus 139 ~~~~~~~l~~g~~~~a~~A-------~~~GLVD~v~ 167 (177)
T cd07014 139 PEQQIDKIAQGGVWTGQDA-------KANGLVDSLG 167 (177)
T ss_pred HHHhHHHhcCcCeEeHHHH-------HHcCCcccCC
Confidence 2222667777788888888 8889987763
No 308
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.69 E-value=0.069 Score=45.85 Aligned_cols=127 Identities=19% Similarity=0.246 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
.+++....+...|+|..|+- .|..-..+ + |.++........+..+.+++.|+|+.|-|..-+
T Consensus 140 lRlm~~AekF~lPiitfIDT----~GAypG~~------A--------EErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgS 201 (317)
T COG0825 140 LRLMKLAEKFGLPIITFIDT----PGAYPGIG------A--------EERGQSEAIARNLREMARLKVPIISIVIGEGGS 201 (317)
T ss_pred HHHHHHHHHhCCCEEEEecC----CCCCCCcc------h--------hhcccHHHHHHHHHHHhCCCCCEEEEEecCCCc
Confidence 35566667788999988763 22211111 1 111334445556667889999999999999998
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
||.--...+|.+.+-+.+.|+. +.|++.+. +.++ -..++++.. ....+++.+.+++|+|+.+++.
T Consensus 202 GGALAi~vad~V~mle~s~ySV------isPEG~As-ILWk-D~~ka~eAA-e~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 202 GGALAIGVADRVLMLENSTYSV------ISPEGCAS-ILWK-DASKAKEAA-EAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred hhhHHhhHHHHHHHHHhceeee------cChhhhhh-hhhc-ChhhhHHHH-HHcCCCHHHHHhCCCcceeccC
Confidence 8888888899999999866543 23444322 2222 122333332 2357899999999999999975
No 309
>KOG1683|consensus
Probab=96.64 E-value=0.00025 Score=62.54 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=116.3
Q ss_pred CCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHHHHHHHHHHH
Q psy12573 47 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLS 125 (315)
Q Consensus 47 ~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (315)
.+.|+.|-... .++-..|+++..+..+++...++.. ..|++|.|..+...
T Consensus 74 ieav~edl~Lk--------~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vv--------------------- 124 (380)
T KOG1683|consen 74 IEAVFEDLELK--------HELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVV--------------------- 124 (380)
T ss_pred ccchhhhHHHH--------HHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhc---------------------
Confidence 45566655554 8888888888888777888777654 33445665544331
Q ss_pred HHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhh--hH
Q psy12573 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAG--CQ 203 (315)
Q Consensus 126 ~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G--~~ 203 (315)
|..|-. | ...-.+.+.+.....++.|+.++++|..-.+| +-
T Consensus 125 -------------------g~h~fs---------------p---a~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vv 167 (380)
T KOG1683|consen 125 -------------------GMHFFS---------------P---AHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVV 167 (380)
T ss_pred -------------------cccccC---------------H---HHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEE
Confidence 111100 0 12223455666777788888888889888888 77
Q ss_pred HHhhcCeeeeeC--CceeeCCCccCCCC-CCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC-chHHHH
Q psy12573 204 LVATCDLAIATT--ASKFSTPGARHGIF-CSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS-NEELES 279 (315)
Q Consensus 204 l~l~~d~~~a~~--~a~~~~pe~~~Gl~-~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~-~~~~~~ 279 (315)
++-+|++++... ....+..+...++. +.+-...+...+|.+.+-..+..+.-++..|+++.|+++++.++ .+++.+
T Consensus 168 Vg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~ 247 (380)
T KOG1683|consen 168 VGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIEEELLE 247 (380)
T ss_pred eccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhHHHHHH
Confidence 888999999873 33336677777743 44433345556666666666777888999999999999999884 377777
Q ss_pred HHHHHHHH
Q psy12573 280 ETKVLTSA 287 (315)
Q Consensus 280 ~~~~~~~~ 287 (315)
..+.....
T Consensus 248 ~~~~g~kT 255 (380)
T KOG1683|consen 248 KGRAGIKT 255 (380)
T ss_pred HHhhhhhc
Confidence 66655433
No 310
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.55 E-value=0.081 Score=50.29 Aligned_cols=146 Identities=11% Similarity=0.156 Sum_probs=89.3
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573 118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197 (315)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~ 197 (315)
...+.+....+...|+|..++. .| |..|.+- |..+.+.....++..+.....|.|+.|.|.+
T Consensus 338 K~~r~i~~a~~~~lPlV~lvDs----~G--~~~g~~~------------E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~ 399 (512)
T TIGR01117 338 KIARFIRFCDAFNIPIVTFVDV----PG--FLPGVNQ------------EYGGIIRHGAKVLYAYSEATVPKVTIITRKA 399 (512)
T ss_pred HHHHHHHHHHHcCCCEEEEEeC----cC--ccccHHH------------HHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 3445555556788999988875 23 3332111 1125555666777788889999999999999
Q ss_pred chhhhHHHhh-----cCeeeeeCCceeeCCCccCCCCCCchH-H-HHhhhcC----HHHH-HHHH--hcCCCCCHHHHHH
Q psy12573 198 AAAGCQLVAT-----CDLAIATTASKFSTPGARHGIFCSTPA-V-ALTRKVP----LGVV-RSMT--ITGIPISAQDAYN 263 (315)
Q Consensus 198 ~g~G~~l~l~-----~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~-~l~~~~g----~~~a-~~~~--~~g~~~~a~~a~~ 263 (315)
.|+| .++++ +|++++-+++ ++|+.+..++ . .+.+.+. ...+ ++.+ ..-+..++..+.+
T Consensus 400 ~Gga-~~am~~~~~~~d~~~a~p~a-------~~~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 471 (512)
T TIGR01117 400 YGGA-YLAMCSKHLGADQVYAWPTA-------EIAVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAA 471 (512)
T ss_pred chHH-HHHhccccCCCCEEEEcCCC-------eEeecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHh
Confidence 8764 55554 8888888884 4455432221 1 1211111 1111 1111 1123457788999
Q ss_pred cCccccccCCchHHHHHHHHHHHHHHh
Q psy12573 264 AGLITRVVSSNEELESETKVLTSAILE 290 (315)
Q Consensus 264 ~Glv~~v~~~~~~~~~~~~~~~~~l~~ 290 (315)
.|+++.+++. .+..+...+..+.+..
T Consensus 472 ~g~vD~VI~P-~~tR~~l~~~l~~~~~ 497 (512)
T TIGR01117 472 RGYVDDVIEP-KQTRPKIVNALAMLES 497 (512)
T ss_pred cCCCCeeECh-HHHHHHHHHHHHHHhc
Confidence 9999999999 8888777777665543
No 311
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=96.51 E-value=0.0013 Score=52.59 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEec
Q psy12573 64 LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAA 143 (315)
Q Consensus 64 ~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g 143 (315)
.+..+...|..++.++ .-.+.|.+-|+...+|. .+.+.+...++|+++.++|.+.+
T Consensus 16 ~~~~~~~~l~~~~~~~-~i~l~inspGG~~~~~~-----------------------~i~~~i~~~~~pvi~~v~g~a~s 71 (160)
T cd07016 16 TAKEFKDALDALGDDS-DITVRINSPGGDVFAGL-----------------------AIYNALKRHKGKVTVKIDGLAAS 71 (160)
T ss_pred CHHHHHHHHHhccCCC-CEEEEEECCCCCHHHHH-----------------------HHHHHHHhcCCCEEEEEcchHHh
Confidence 3488889999888763 33455566665443332 23344566789999999999999
Q ss_pred ccchhccccChhhhhhhcCCCCcc
Q psy12573 144 AGCQLVATCDLAIATTASKFSTPG 167 (315)
Q Consensus 144 ~G~~f~~g~D~~~~~~~~~~~~~~ 167 (315)
+|..+..+||.+++.+.+.|....
T Consensus 72 ~g~~ia~a~d~~~~~~~a~~~~~~ 95 (160)
T cd07016 72 AASVIAMAGDEVEMPPNAMLMIHN 95 (160)
T ss_pred HHHHHHhcCCeEEECCCcEEEEEC
Confidence 999999999999998887765443
No 312
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.37 E-value=0.094 Score=44.53 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=55.2
Q ss_pred HHHHHhcCCCcEEEEEccccchhhhHHH-hhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcC--C
Q psy12573 178 LMLSILRHPVPILAIISGVAAAAGCQLV-ATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITG--I 254 (315)
Q Consensus 178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~-l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g--~ 254 (315)
.+......+.|+|+.|.|.+.|||+.-. +.+|.+++-+. ..++..+..+...+.++ ....+.++...- .
T Consensus 99 a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~-------A~i~vm~~e~aa~I~~~-~~~~~~e~a~~~~~~ 170 (238)
T TIGR03134 99 ALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPG-------AMVHVMDLESMARVTKR-SVEELEALAKSSPVF 170 (238)
T ss_pred HHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCC-------cEEEecCHHHHHHHHcc-CHhHHHHHHHhhhhh
Confidence 3444456679999999999998775533 34777777766 55566544433333222 112333333221 2
Q ss_pred CCCHHHHHHcCccccccCC
Q psy12573 255 PISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 255 ~~~a~~a~~~Glv~~v~~~ 273 (315)
..+...+.+.|+|+.+++.
T Consensus 171 a~~~~~~~~~G~vd~vi~~ 189 (238)
T TIGR03134 171 APGIENFVKLGGVHALLDV 189 (238)
T ss_pred ccCHHHHHhCCCccEEeCC
Confidence 3567788999999999986
No 313
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.018 Score=52.49 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEEEccc---cchhhhHHHhhcCeeeeeCCceeeCCCccCCCC--C-Cch------HH--
Q psy12573 170 ILVSTCSDLMLSILRHPVPILAIISGV---AAAAGCQLVATCDLAIATTASKFSTPGARHGIF--C-STP------AV-- 235 (315)
Q Consensus 170 ~~~~~~~~~~~~l~~~~kpvIa~v~G~---~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~--~-~~~------~~-- 235 (315)
++...+....+.+...|.|++..|.-. |.-.|.+++++||+..+++.+.+|-...-.+-. + ... .+
T Consensus 69 Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~ 148 (436)
T COG1030 69 GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIR 148 (436)
T ss_pred chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHH
Confidence 455566778889999999998888765 888999999999999999997776544322111 0 001 11
Q ss_pred HHhhhcCH--HHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573 236 ALTRKVPL--GVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 236 ~l~~~~g~--~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
.+++.-|+ ..+.+++.....++++||++.|+++-+..+.+|+
T Consensus 149 ~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~el 192 (436)
T COG1030 149 SLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNEL 192 (436)
T ss_pred HHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHH
Confidence 24444444 4888899999999999999999999887653333
No 314
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=96.23 E-value=0.038 Score=49.77 Aligned_cols=130 Identities=19% Similarity=0.230 Sum_probs=70.6
Q ss_pred CCCcccccCCCCccccchHHHHHHHHHHhhhc-------CCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHH
Q psy12573 46 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHY-------APGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFST 118 (315)
Q Consensus 46 ~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~-------d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~ 118 (315)
..+.|++ ..+++||+++|.+++.++..... +++..+|++.|||.+ +.|.....+..
T Consensus 118 ~~~~~~~--~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~-~~G~~~Ealn~-------------- 180 (341)
T CHL00149 118 SAPHNFL--GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTT-NNGQFFECLNM-------------- 180 (341)
T ss_pred chhcCcc--CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchh-hhcHHHHHHHH--------------
Confidence 3446666 35699999999999999984322 257789999999985 35554333211
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchh-ccccChhhhhhhcCCCCcchh--h-----HHHHHHHHHHHHhcCCCcEE
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQL-VATCDLAIATTASKFSTPGYN--I-----LVSTCSDLMLSILRHPVPIL 190 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f-~~g~D~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~l~~~~kpvI 190 (315)
....+.|...++.=|++..+..... +...|+...++. |+.+..+ + ....+...+...+...+|++
T Consensus 181 -----A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a--~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~l 253 (341)
T CHL00149 181 -----AVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEA--FGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTL 253 (341)
T ss_pred -----HhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHh--CCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 0112233223333444333332211 123455544444 4444433 1 12223445555566677887
Q ss_pred EEEccccch
Q psy12573 191 AIISGVAAA 199 (315)
Q Consensus 191 a~v~G~~~g 199 (315)
..+.=+-..
T Consensus 254 Iev~tyR~~ 262 (341)
T CHL00149 254 IEALTYRFR 262 (341)
T ss_pred EEEEEecCC
Confidence 766655544
No 315
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.22 E-value=0.027 Score=47.11 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=68.5
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCCCchHH----------------HHh
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFCSTPAV----------------ALT 238 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~~~~~~----------------~l~ 238 (315)
..+..+...+-+|...+.|.|.+.+.-|+++|+. |.+-+.+++.+.....|......-. .+.
T Consensus 98 aIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya 177 (222)
T PRK12552 98 AICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILS 177 (222)
T ss_pred HHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888889999999999999999999997 8888999987766554432111100 011
Q ss_pred hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
+.-| .....+.+....-++++||+++|++++++..
T Consensus 178 ~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 178 RNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 1112 1244555555567999999999999999865
No 316
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.21 E-value=0.11 Score=49.39 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=57.9
Q ss_pred CCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH---
Q psy12573 185 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA--- 261 (315)
Q Consensus 185 ~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a--- 261 (315)
-..|.|+.+.|+|.||+......||++++.+.. ..+++. |++..+. .+|+.+++++.
T Consensus 153 ~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~------a~i~~a------------GP~vv~~--~~Ge~v~~e~lGGa 212 (512)
T TIGR01117 153 GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNT------SQMFIT------------GPQVIKT--VTGEEVTAEQLGGA 212 (512)
T ss_pred CCCcEEEEEecCCCcHHHHHHHhcCceEEeccc------eEEEec------------ChHHHHh--hcCcccchhhcchH
Confidence 358999999999999999888899999999862 123332 2222222 12444444432
Q ss_pred ----HHcCccccccCCchHHHHHHHHHHHHHHh
Q psy12573 262 ----YNAGLITRVVSSNEELESETKVLTSAILE 290 (315)
Q Consensus 262 ----~~~Glv~~v~~~~~~~~~~~~~~~~~l~~ 290 (315)
..-|.++.++++.++..+.++++..-+-.
T Consensus 213 ~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp~ 245 (512)
T TIGR01117 213 MAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPS 245 (512)
T ss_pred HHhccccceeEEecCChHHHHHHHHHHHHhCCc
Confidence 35789988888756677777777766543
No 317
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.12 E-value=0.023 Score=50.57 Aligned_cols=93 Identities=20% Similarity=0.248 Sum_probs=62.2
Q ss_pred cEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcC-------------------------
Q psy12573 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP------------------------- 242 (315)
Q Consensus 188 pvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g------------------------- 242 (315)
||++.|.+.|.-||..++++||.++|++.+..|=-.+..+.. .. ..+..+.|
T Consensus 130 PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~-~~--~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~ 206 (317)
T COG0616 130 PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGAP-NF--EELLEKLGVEKEVITAGEYKDILSPFRPLTEEE 206 (317)
T ss_pred CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEecC-CH--HHHHHhcCCceeeeeccccccccCcccCCCHHH
Confidence 999999999999999999999999999997765433322211 11 01111111
Q ss_pred -------------------------HHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHHH
Q psy12573 243 -------------------------LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284 (315)
Q Consensus 243 -------------------------~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~ 284 (315)
......-+.+|+.+++++|.+.|||+++-.. ++........
T Consensus 207 ~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~-~~av~~~~~~ 272 (317)
T COG0616 207 REILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGL-DDAVKDAAEL 272 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCH-HHHHHHHHHh
Confidence 0011234567888999999999999999776 5544444433
No 318
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.11 E-value=0.04 Score=45.04 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=66.5
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCee--eeeCCceeeCCCccCCCCCCchH-H------------H----H
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLA--IATTASKFSTPGARHGIFCSTPA-V------------A----L 237 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~--~a~~~a~~~~pe~~~Gl~~~~~~-~------------~----l 237 (315)
..+..++..+.||...+.|.+...|.-|+++++.. ++.+.+++-+.... |.+-+... . . +
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~ 154 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIY 154 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667888999999999999999999999999985 88888887665544 33322211 0 0 1
Q ss_pred hhhcCHH--HHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 238 TRKVPLG--VVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 238 ~~~~g~~--~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
+..-|.. ...+.+-...-++++||+++||+++|...
T Consensus 155 a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~ 192 (200)
T COG0740 155 AEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIES 192 (200)
T ss_pred HHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccc
Confidence 1111211 22233334556899999999999999876
No 319
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=96.03 E-value=0.0065 Score=49.31 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhcCCCCeEEEE--EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEe
Q psy12573 65 GFALAAALYCNHYAPGKRVVCV--QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAA 142 (315)
Q Consensus 65 ~~~l~~~l~~~~~d~~~~vvvl--~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~ 142 (315)
..-+..+|+++++++ .+.|++ .+-|+ ++... ..+...+.+.++|+++.++|.+.
T Consensus 15 ~~~l~~~l~~a~~~~-~~~ivl~inspGG------~v~~~-----------------~~I~~~l~~~~~pvva~V~g~Aa 70 (178)
T cd07021 15 AAFVERALKEAKEEG-ADAVVLDIDTPGG------RVDSA-----------------LEIVDLILNSPIPTIAYVNDRAA 70 (178)
T ss_pred HHHHHHHHHHHHhCC-CCeEEEEEECcCC------CHHHH-----------------HHHHHHHHhCCCCEEEEECCchH
Confidence 367788888887776 455555 34343 22221 23445567788999999999999
Q ss_pred cccchhccccChhhhhhhcCCCCcc
Q psy12573 143 AAGCQLVATCDLAIATTASKFSTPG 167 (315)
Q Consensus 143 g~G~~f~~g~D~~~~~~~~~~~~~~ 167 (315)
++|..++.+||...+.+.+.++..+
T Consensus 71 SaG~~ia~a~d~i~m~p~a~iG~~~ 95 (178)
T cd07021 71 SAGALIALAADEIYMAPGATIGAAE 95 (178)
T ss_pred HHHHHHHHhCCeEEECCCCeEecCe
Confidence 9999999999999998887776543
No 320
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.93 E-value=0.42 Score=45.44 Aligned_cols=87 Identities=21% Similarity=0.349 Sum_probs=60.0
Q ss_pred HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCC-ceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQ 259 (315)
Q Consensus 181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~-a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~ 259 (315)
.+.. ..|+|+.+.|+|.|+|.++...||++++.+. +++ ++. |++..+. .+|+.++.+
T Consensus 127 ~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i-------~l~------------GP~vv~~--~~Ge~~~~~ 184 (493)
T PF01039_consen 127 RLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARI-------FLA------------GPRVVES--ATGEEVDSE 184 (493)
T ss_dssp HHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEE-------ESS------------THHHHHH--HHSSCTSHH
T ss_pred HHhc-CCCeEEEEccccccchhhcccccCccccCccceEE-------Eec------------ccccccc--ccCccccch
Confidence 4445 9999999999999999999999999999886 444 332 3333332 246777766
Q ss_pred HH-------HHcCccccccCCchHHHHHHHHHHHHHH
Q psy12573 260 DA-------YNAGLITRVVSSNEELESETKVLTSAIL 289 (315)
Q Consensus 260 ~a-------~~~Glv~~v~~~~~~~~~~~~~~~~~l~ 289 (315)
+. ...|.++.+++++++..+.++++..-+-
T Consensus 185 ~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp 221 (493)
T PF01039_consen 185 ELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLP 221 (493)
T ss_dssp HHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-
T ss_pred hhhhhhhhcccCCCceEEEechHHHHHHHHHhhcccc
Confidence 53 4679999999883344555666555443
No 321
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=95.73 E-value=0.33 Score=47.08 Aligned_cols=41 Identities=12% Similarity=0.061 Sum_probs=29.8
Q ss_pred HHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeC
Q psy12573 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST 221 (315)
Q Consensus 180 ~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~ 221 (315)
..+....|||+|...+++ -+|..++..||.+++.+...+++
T Consensus 120 ~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 120 SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEe
Confidence 344456788888777665 45788899999999988766644
No 322
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=95.50 E-value=0.077 Score=47.85 Aligned_cols=44 Identities=16% Similarity=0.013 Sum_probs=35.1
Q ss_pred CCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCc
Q psy12573 47 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF 92 (315)
Q Consensus 47 ~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~ 92 (315)
...|.+... ++||.++|.+++.++..--..++..+|++.|||.+
T Consensus 113 ~~~~~~g~~--~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~ 156 (341)
T TIGR03181 113 EGVNILPPN--IPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGT 156 (341)
T ss_pred hhcCccCCC--chHhcchhHHHhHHHHHHhhCCCCEEEEEecCCcc
Confidence 344555443 67999999999999987666688899999999985
No 323
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=95.45 E-value=0.14 Score=45.58 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=36.2
Q ss_pred cccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchh
Q psy12573 49 RHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 98 (315)
Q Consensus 49 ~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~D 98 (315)
.|.+.. .++||+++|.+++.++..-...++..+|++.|||.+ ..|.-
T Consensus 103 ~~~~~~--~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~-~~g~~ 149 (315)
T TIGR03182 103 KNFYGG--HGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAA-NQGQF 149 (315)
T ss_pred hCcccC--cCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcc-cccHH
Confidence 455543 489999999999999986555567899999999984 44543
No 324
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=95.23 E-value=0.14 Score=44.11 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=32.3
Q ss_pred CCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCcc
Q psy12573 56 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG 93 (315)
Q Consensus 56 ~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~ 93 (315)
..++||+++|.+++.++..-...++.+|++|.|||.+.
T Consensus 103 ~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~ 140 (255)
T cd02012 103 TTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQ 140 (255)
T ss_pred CCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECccccc
Confidence 34999999999999999875555688999999999754
No 325
>PRK10949 protease 4; Provisional
Probab=94.77 E-value=0.68 Score=45.13 Aligned_cols=25 Identities=4% Similarity=0.034 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCC
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDS 90 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g 90 (315)
..+.++|+++..|+.++.|+|.-++
T Consensus 98 ~div~~i~~Aa~D~rIkgivL~i~s 122 (618)
T PRK10949 98 FDIVNTIRQAKDDRNITGIVLDLKN 122 (618)
T ss_pred HHHHHHHHHHhcCCCceEEEEEeCC
Confidence 6889999999999999999998765
No 326
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=94.52 E-value=0.64 Score=38.33 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=33.8
Q ss_pred CCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchh
Q psy12573 55 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 98 (315)
Q Consensus 55 ~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~D 98 (315)
...+++|.++|.+++.++..-...++.+++++.|||... .|.-
T Consensus 72 ~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~-eG~~ 114 (195)
T cd02007 72 FGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALT-GGMA 114 (195)
T ss_pred ECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccc-cChH
Confidence 345899999999999999865545578999999999743 4543
No 327
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.51 E-value=1.1 Score=43.10 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=57.3
Q ss_pred HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA 261 (315)
Q Consensus 182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a 261 (315)
+.....|.|+.+.|+|.|||......||++++.+.. ..+++. |+...+. .+|+.+++++.
T Consensus 201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~------a~i~~a------------GP~vV~~--~~Ge~v~~eeL 260 (569)
T PLN02820 201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGN------GTIFLA------------GPPLVKA--ATGEEVSAEDL 260 (569)
T ss_pred HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCC------cEEEec------------CHHHHHh--hcCcccCHHHh
Confidence 344568999999999999999999999999987651 223332 3333332 23455555543
Q ss_pred -------HHcCccccccCCchHHHHHHHHHHHHHH
Q psy12573 262 -------YNAGLITRVVSSNEELESETKVLTSAIL 289 (315)
Q Consensus 262 -------~~~Glv~~v~~~~~~~~~~~~~~~~~l~ 289 (315)
..-|.++.++++..+..+.++++..-|-
T Consensus 261 GGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~Lp 295 (569)
T PLN02820 261 GGADVHCKVSGVSDHFAQDELHALAIGRNIVKNLH 295 (569)
T ss_pred CCHHHhcccccccccccCchHHHHHHHHHHHHhcC
Confidence 2468888888773444456676666653
No 328
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=94.45 E-value=0.59 Score=41.19 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=31.3
Q ss_pred CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCc
Q psy12573 57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF 92 (315)
Q Consensus 57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~ 92 (315)
.++||+++|.+++.++..-...++.++|++.|||.+
T Consensus 103 ~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~ 138 (293)
T cd02000 103 NGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGAT 138 (293)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCcc
Confidence 489999999999999986555678899999999984
No 329
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.26 E-value=1.4 Score=42.48 Aligned_cols=145 Identities=13% Similarity=0.110 Sum_probs=85.8
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
..+.+....+...|+|..++. .+|..|.+-. ..+.......++..+.....|.|..+-|.+.
T Consensus 390 aarfi~lc~~~~iPlv~l~D~------pGf~~G~~~E------------~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~ 451 (569)
T PLN02820 390 GAHFIELCAQRGIPLLFLQNI------TGFMVGSRSE------------ASGIAKAGAKMVMAVACAKVPKITIIVGGSF 451 (569)
T ss_pred HHHHHHHHHhcCCCEEEEEEC------CCCCCCHHHH------------HhhHHHHHHHHHHHHHhCCCCEEEEEECCcc
Confidence 344445555677888887775 2243332221 1256666677788888999999999999999
Q ss_pred hhhhHHHh----hcCeeeeeCCceeeCCCccCCCCCCchHH-HHhh-hc-----------CHHH--HHHHH--hcCCCCC
Q psy12573 199 AAGCQLVA----TCDLAIATTASKFSTPGARHGIFCSTPAV-ALTR-KV-----------PLGV--VRSMT--ITGIPIS 257 (315)
Q Consensus 199 g~G~~l~l----~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~-~l~~-~~-----------g~~~--a~~~~--~~g~~~~ 257 (315)
|+|..-+. ..|++++-+. .++|..+..++. .+.+ .+ .... .++.+ ...+..+
T Consensus 452 G~g~~aM~g~~~~~d~~~awp~-------A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (569)
T PLN02820 452 GAGNYGMCGRAYSPNFLFMWPN-------ARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREAN 524 (569)
T ss_pred hHHHHHhcCcCCCCCEEEECCC-------CeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCC
Confidence 97665554 3455555555 666766443322 1211 11 0111 11111 1122457
Q ss_pred HHHHHHcCccccccCCchHHHHHHHHHHHHHH
Q psy12573 258 AQDAYNAGLITRVVSSNEELESETKVLTSAIL 289 (315)
Q Consensus 258 a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~ 289 (315)
+..+.+.++++.|++. .+.........+...
T Consensus 525 p~~aa~~~~vD~VIdP-~dTR~~l~~~l~~~~ 555 (569)
T PLN02820 525 PYYSTARLWDDGVIDP-ADTRRVLGLCLSAAL 555 (569)
T ss_pred HHHHHHcCCcCcccCH-HHHHHHHHHHHHHhh
Confidence 7788899999999998 777666555554443
No 330
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=93.81 E-value=0.45 Score=44.82 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
-..++...+...|+|.+.++ +|..+--+ + +...++-.-+.... .++.. .|.|+.|.|+|.|
T Consensus 116 ~r~~~~A~~~g~P~i~l~ds----gGari~~~-----v--------~~l~g~g~iF~~~a-~~Sg~-IPqIsvv~G~c~g 176 (526)
T COG4799 116 LRAQELAIENGLPVIGLNDS----GGARIQEG-----V--------PSLAGYGRIFYRNA-RASGV-IPQISVVMGPCAG 176 (526)
T ss_pred HHHHHHHHHcCCCEEEEEcc----cccccccC-----c--------cccccchHHHHHHH-HhccC-CCEEEEEEecCcc
Confidence 34555566778899987765 44433222 0 01112211122221 23334 8999999999999
Q ss_pred hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH------HHc-CccccccC
Q psy12573 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA------YNA-GLITRVVS 272 (315)
Q Consensus 200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a------~~~-Glv~~v~~ 272 (315)
||.++-..||++++.++. ..+.+. |+...+. -+|+.+++++. .+. |.++.+.+
T Consensus 177 GgaY~pal~D~~imv~~~------~~mflt------------GP~~ik~--vtGe~V~~e~LGGa~vh~~~sGva~~~a~ 236 (526)
T COG4799 177 GGAYSPALTDFVIMVRDQ------SYMFLT------------GPPVIKA--VTGEEVSAEELGGAQVHARKSGVADLLAE 236 (526)
T ss_pred cccccccccceEEEEcCC------ccEEee------------CHHHHHh--hcCcEeehhhccchhhhcccccceeeeec
Confidence 999999999999999872 112121 2222222 24565555543 333 88888887
Q ss_pred CchHHHHHHHHHHHHHH
Q psy12573 273 SNEELESETKVLTSAIL 289 (315)
Q Consensus 273 ~~~~~~~~~~~~~~~l~ 289 (315)
++++..+.+++++.-+-
T Consensus 237 dd~~Ai~~vr~~lsylp 253 (526)
T COG4799 237 DDEDAIELVRRLLSYLP 253 (526)
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 73445555555554443
No 331
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=92.16 E-value=0.055 Score=45.15 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG 145 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G 145 (315)
.++..+|..++.|+++++|+|+++ |.|+|+.... .+.+.+..+...++|+++.++|.+.|+|
T Consensus 20 ~~l~~~l~~a~~d~~i~~ivl~~~----s~Gg~~~~~~--------------~i~~~i~~~~~~~kpvia~v~g~~~s~g 81 (208)
T cd07023 20 DSLIEQLRKAREDDSVKAVVLRIN----SPGGSVVASE--------------EIYREIRRLRKAKKPVVASMGDVAASGG 81 (208)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEE----CCCCCHHHHH--------------HHHHHHHHHHhcCCcEEEEECCcchhHH
Confidence 899999999999999999999985 5677775421 1344556677789999999999999999
Q ss_pred chhccccChhhhhhhcCCCCcchh
Q psy12573 146 CQLVATCDLAIATTASKFSTPGYN 169 (315)
Q Consensus 146 ~~f~~g~D~~~~~~~~~~~~~~~~ 169 (315)
..++++||..++.+.+.++...+.
T Consensus 82 ~~lA~aaD~i~a~~~s~~g~iG~~ 105 (208)
T cd07023 82 YYIAAAADKIVANPTTITGSIGVI 105 (208)
T ss_pred HHHHhhCCEEEECCCCeEEeCcEE
Confidence 999999999999888766655444
No 332
>PRK05899 transketolase; Reviewed
Probab=91.88 E-value=0.89 Score=44.64 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCccccchHHHHHHHHHHhhhcCC----------CCeEEEEEcCCCcc
Q psy12573 56 TFGTMGVGLGFALAAALYCNHYAP----------GKRVVCVQGDSAFG 93 (315)
Q Consensus 56 ~~~~mg~~~~~~l~~~l~~~~~d~----------~~~vvvl~g~g~~~ 93 (315)
..++||+++|.+++.+++.-.... +.+++++.|||.+.
T Consensus 116 ~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~ 163 (624)
T PRK05899 116 TTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLM 163 (624)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhh
Confidence 369999999999999998643322 67999999999743
No 333
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=91.83 E-value=0.052 Score=45.40 Aligned_cols=134 Identities=17% Similarity=0.139 Sum_probs=73.6
Q ss_pred HHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV 205 (315)
Q Consensus 126 ~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~ 205 (315)
+...+||+++.++|.+.++|..+++.||..++.+.+.++.-...........++..+. -++.+..+.|....
T Consensus 66 ~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~G--v~~~~~~~~g~~k~------ 137 (211)
T cd07019 66 ARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIG--VHTDGVSTSPLADV------ 137 (211)
T ss_pred HHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcC--CceEEEEecCcccC------
Confidence 4557899999999999999999999999999988876654443322222333332211 11222222233221
Q ss_pred hhcCeeeeeCCceeeCCCccCCCCCCc---hHHH---Hh--hhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573 206 ATCDLAIATTASKFSTPGARHGIFCST---PAVA---LT--RKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277 (315)
Q Consensus 206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~---~~~~---l~--~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~ 277 (315)
...+. .+ +|.+.++.... ...+ .. |.+.+.... .+..+..+++++|++.||||++-.. ++.
T Consensus 138 ~~~~~--~s-------~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~-~~~~~~~~~~~~A~~~GLvD~i~~~-~~~ 206 (211)
T cd07019 138 SITRA--LP-------PEAQLGLQLSIENGYKRFITLVADARHSTPEQID-KIAQGHVWTGQDAKANGLVDSLGDF-DDA 206 (211)
T ss_pred CCCCC--CC-------HHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH-HhcCCcEEeHHHHHHcCCcccCCCH-HHH
Confidence 00111 01 11122221111 0111 11 223333333 3567889999999999999998766 554
Q ss_pred H
Q psy12573 278 E 278 (315)
Q Consensus 278 ~ 278 (315)
.
T Consensus 207 ~ 207 (211)
T cd07019 207 V 207 (211)
T ss_pred H
Confidence 3
No 334
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=91.82 E-value=1.3 Score=42.13 Aligned_cols=147 Identities=10% Similarity=0.110 Sum_probs=83.2
Q ss_pred HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
..+.+....+..-|+|.+++- .+|..|.+ . |..+.......++..+..+..|+|..+.|.+.
T Consensus 318 ~arfi~lcd~~~iPlv~l~dt------pGf~~g~~----~--------E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~ 379 (493)
T PF01039_consen 318 AARFIRLCDAFNIPLVTLVDT------PGFMPGPE----A--------ERAGIIRAGARLLYALAEATVPKITVIVRKAY 379 (493)
T ss_dssp HHHHHHHHHHTT--EEEEEEE------CEB--SHH----H--------HHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEE
T ss_pred HHHHHHHHHhhCCceEEEeec------ccccccch----h--------hhcchHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 334444455677899888764 23332211 1 11256666777888899999999999999999
Q ss_pred hhhhHHHhhc----CeeeeeCCceeeCCCccCCCCCCchHH--HHhh----hc--C--HH-HHHHHHh--cCCCCCHHHH
Q psy12573 199 AAGCQLVATC----DLAIATTASKFSTPGARHGIFCSTPAV--ALTR----KV--P--LG-VVRSMTI--TGIPISAQDA 261 (315)
Q Consensus 199 g~G~~l~l~~----d~~~a~~~a~~~~pe~~~Gl~~~~~~~--~l~~----~~--g--~~-~a~~~~~--~g~~~~a~~a 261 (315)
|+|...+... |+++|-+. .++|..+..++. ...+ .- + .. ..++.+. .....++..+
T Consensus 380 Gga~~am~~~~~~~~~~~Awp~-------a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (493)
T PF01039_consen 380 GGAYYAMCGRGYGPDFVFAWPT-------AEIGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRA 452 (493)
T ss_dssp HHHHHHTTGGGGTTSEEEEETT--------EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHH
T ss_pred Ccchhhhcccccchhhhhhhhc-------ceeeecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHH
Confidence 9776555544 56666666 666666433221 1111 10 0 00 0111111 1122578889
Q ss_pred HHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573 262 YNAGLITRVVSSNEELESETKVLTSAILEN 291 (315)
Q Consensus 262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~ 291 (315)
...++++.+++. .+.........+-+.++
T Consensus 453 a~~~~~D~ii~p-~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 453 ASRGYVDDIIDP-AETRKVLIAALEMLWQK 481 (493)
T ss_dssp HHTTSSSEESSG-GGHHHHHHHHHHHHTTS
T ss_pred HhcCCCCCccCH-HHHHHHHHHHHHHHHhC
Confidence 999999999998 88877766666655443
No 335
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.23 E-value=7.6 Score=34.27 Aligned_cols=79 Identities=15% Similarity=0.068 Sum_probs=43.4
Q ss_pred HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHH--HHHHhhhcCCCCeEEEEEc
Q psy12573 12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALA--AALYCNHYAPGKRVVCVQG 88 (315)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~--~~l~~~~~d~~~~vvvl~g 88 (315)
--++..|.+.+.++.+++.+ |-...+...+ -..|-....++ ..||-+...+.+ .++... +++.+||++.|
T Consensus 27 ~~~~~~l~~a~g~~~vi~~~iGC~s~~~~~~-p~~~~~~~~~~----~~fg~~~a~a~Gi~~a~~~~--~~~~~Vv~~~G 99 (299)
T PRK11865 27 AIAMRLALKALGKNTVIVVATGCLEVITTPY-PETAWNVPWIH----VAFENAAAVASGIERAVKAL--GKKVNVVAIGG 99 (299)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccccCccC-cCCccccccch----hhhcchHHHHHHHHHHHHHh--cCCCeEEEEeC
Confidence 34677788888888888888 7655432221 01111122222 344444444433 333322 24678999999
Q ss_pred CCCccccch
Q psy12573 89 DSAFGFSGM 97 (315)
Q Consensus 89 ~g~~~~aG~ 97 (315)
||.++-.|.
T Consensus 100 DG~~~dIG~ 108 (299)
T PRK11865 100 DGGTADIGF 108 (299)
T ss_pred CchHhhccH
Confidence 997554453
No 336
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=89.90 E-value=0.1 Score=43.78 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=70.7
Q ss_pred hccCCCcccc-cCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHH
Q psy12573 43 LLNNLPRHRL-DAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSD 121 (315)
Q Consensus 43 l~~~~~~n~~-~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 121 (315)
.+++...|.+ +..++ .++.++|++++.|+++++|+|+.+ |.|+++... ..+.+
T Consensus 12 ~~~~~~~~~~~~~~~~--------~~l~~~l~~a~~d~~i~~Vvl~~~----s~gg~~~~~--------------~~l~~ 65 (214)
T cd07022 12 VPRGSWLEASSGLTSY--------EGIAAAIRAALADPDVRAIVLDID----SPGGEVAGV--------------FELAD 65 (214)
T ss_pred eCCCCcccCCCCcccH--------HHHHHHHHHHhhCCCCcEEEEEEe----CCCCcHHHH--------------HHHHH
Confidence 3444545543 34445 999999999999999999999763 335554322 12333
Q ss_pred HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcch
Q psy12573 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGY 168 (315)
Q Consensus 122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~ 168 (315)
.+..+.. ++|+|+.++|.+.|+|..++++||..++.+.+.++...+
T Consensus 66 ~l~~~~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~ 111 (214)
T cd07022 66 AIRAARA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGV 111 (214)
T ss_pred HHHHHhc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeE
Confidence 4444444 799999999999999999999999999888876654443
No 337
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=89.55 E-value=3.5 Score=38.44 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=32.9
Q ss_pred cccccCCCCccccchHHHHHHHHHHhhhc-------CCCCeEEEEEcCCCccccch
Q psy12573 49 RHRLDAGTFGTMGVGLGFALAAALYCNHY-------APGKRVVCVQGDSAFGFSGM 97 (315)
Q Consensus 49 ~n~~~~~~~~~mg~~~~~~l~~~l~~~~~-------d~~~~vvvl~g~g~~~~aG~ 97 (315)
.|.+ ...+.||.++|.+++.++..--. .++..+|++.|||.. ..|.
T Consensus 187 ~~~~--g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~-~eG~ 239 (433)
T PLN02374 187 HNLL--GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTC-NNGQ 239 (433)
T ss_pred hCCC--CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCcc-ccCh
Confidence 4544 34588999999999999974222 246789999999964 3443
No 338
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=88.65 E-value=0.47 Score=35.64 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573 278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315 (315)
Q Consensus 278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l 315 (315)
.+.+.+..+.|.+.||.|+..+.++++++...+++++|
T Consensus 30 ~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l 67 (118)
T PF13766_consen 30 DEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECL 67 (118)
T ss_dssp -HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHH
T ss_pred cHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHH
Confidence 35677778899999999999999999999999999875
No 339
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=86.33 E-value=6.6 Score=38.26 Aligned_cols=45 Identities=29% Similarity=0.366 Sum_probs=34.4
Q ss_pred CCccccchHHHHHHHHHHhhhc-CCCCeEEEEEcCCCccccchhhhH
Q psy12573 56 TFGTMGVGLGFALAAALYCNHY-APGKRVVCVQGDSAFGFSGMELET 101 (315)
Q Consensus 56 ~~~~mg~~~~~~l~~~l~~~~~-d~~~~vvvl~g~g~~~~aG~Dl~~ 101 (315)
..+++|.++|.+++.+++.... +++.+++++.|||.. ..|.-.+.
T Consensus 115 ~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l-~eG~~~Ea 160 (580)
T PRK05444 115 GAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGAL-TGGMAFEA 160 (580)
T ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEccccc-ccCHHHHH
Confidence 4589999999999999986544 467899999999973 34554433
No 340
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=85.60 E-value=21 Score=30.19 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCCcEEEEEccccchhhhH-HHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhc
Q psy12573 174 TCSDLMLSILRHPVPILAIISGVAAAAGCQ-LVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTIT 252 (315)
Q Consensus 174 ~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~-l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~ 252 (315)
.....+...+...=|+|+.+.|.++.|||- ..+.+|.++|-+. +.+-.-+-....+.. ++......++..+
T Consensus 93 hla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-------a~i~vM~~~s~ARVT-k~~ve~Le~la~s 164 (234)
T PF06833_consen 93 HLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG-------AMIHVMGKPSAARVT-KRPVEELEELAKS 164 (234)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC-------CeeecCChHHhHHHh-hcCHHHHHHHhhc
Confidence 344566677788999999999999998864 7788898888665 332211111122333 2355555666555
Q ss_pred CCCC--CHHHHHHcCccccccCC
Q psy12573 253 GIPI--SAQDAYNAGLITRVVSS 273 (315)
Q Consensus 253 g~~~--~a~~a~~~Glv~~v~~~ 273 (315)
--.+ +.+.-.++|.++++++.
T Consensus 165 ~PvfA~gi~ny~~lG~l~~l~~~ 187 (234)
T PF06833_consen 165 VPVFAPGIENYAKLGALDELWDG 187 (234)
T ss_pred CCCcCCCHHHHHHhccHHHHhcc
Confidence 5443 45566899999999884
No 341
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=85.03 E-value=27 Score=30.91 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=47.1
Q ss_pred HHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccC-CCCccccchHHHHHHHHHHh-hhcCCCCeEEEEEcCC
Q psy12573 14 AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDA-GTFGTMGVGLGFALAAALYC-NHYAPGKRVVCVQGDS 90 (315)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~-~~~~~mg~~~~~~l~~~l~~-~~~d~~~~vvvl~g~g 90 (315)
++..+.+.+.++.|++.+ |-... .... + |.+.++- .....||-+.+.+.+.++.. ...++++.||++.|||
T Consensus 29 ~~~~l~~~lg~~~v~~~~iGC~~~-~~g~-~----p~~~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG 102 (300)
T PRK11864 29 GLRYLLKALGEKTVLVIPASCSTV-IQGD-T----PKSPLTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDG 102 (300)
T ss_pred HHHHHHHHhCCCeEEEeCCCccce-ecCC-C----CcccccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccC
Confidence 346777888888888888 55432 1111 1 3333322 23467788888888777763 2223457777799999
Q ss_pred Cccccc
Q psy12573 91 AFGFSG 96 (315)
Q Consensus 91 ~~~~aG 96 (315)
.++-.|
T Consensus 103 ~~~~~g 108 (300)
T PRK11864 103 GTADIG 108 (300)
T ss_pred cccccc
Confidence 755444
No 342
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=84.76 E-value=2.2 Score=37.56 Aligned_cols=92 Identities=17% Similarity=0.234 Sum_probs=55.8
Q ss_pred ccccchHHHHHHHHHHhhhcCC----CCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcE
Q psy12573 58 GTMGVGLGFALAAALYCNHYAP----GKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPI 133 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~d~----~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (315)
|++|-.-...+..+++.+.++. ...+|.|.-.|+... .+-. ... ..+..+...+..+... .|+
T Consensus 82 GS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRl-----qEg~------~~L-~~~a~i~~~~~~ls~~-VP~ 148 (301)
T PRK07189 82 GSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRL-----QEAN------AGL-AAIAEIMRAIVDLRAA-VPV 148 (301)
T ss_pred cCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCc-----cchH------HHH-HHHHHHHHHHHHHhCC-CCE
Confidence 7777777777777777665554 267777755554322 1110 000 0111112222233333 899
Q ss_pred EEEEeeE--EecccchhccccChhhhhhhcC
Q psy12573 134 LAIISGV--AAAAGCQLVATCDLAIATTASK 162 (315)
Q Consensus 134 i~~v~G~--~~g~G~~f~~g~D~~~~~~~~~ 162 (315)
|+++.|. |+|++......||+.++.+.+.
T Consensus 149 I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~ 179 (301)
T PRK07189 149 IGLIGGRVGCFGGMGIAAALCSYLIVSEEGR 179 (301)
T ss_pred EEEEcCCCCCcHHHHHHHhcCCEEEEECCcE
Confidence 9999999 8998887778899999887643
No 343
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=83.49 E-value=3.2 Score=36.05 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=53.6
Q ss_pred ccccchHHHHHHHHHHhhhc----CCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHH---HHHcCC
Q psy12573 58 GTMGVGLGFALAAALYCNHY----APGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLML---SILRHP 130 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~----d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 130 (315)
++||-.-...+..+++.+.. .....+|.|.-.|+... .+-. ..+..+.+.+. .+...
T Consensus 73 GS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRl-----qEg~----------~~L~~~a~i~~~~~~ls~~- 136 (274)
T TIGR03133 73 GSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRL-----QEAN----------AGLIAIAEIMRAILDARAA- 136 (274)
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcCh-----hhhH----------HHHHHHHHHHHHHHHHhCC-
Confidence 67776666777777766544 12345777755544322 2111 01111222232 23333
Q ss_pred CcEEEEEeeE--EecccchhccccChhhhhhhc
Q psy12573 131 VPILAIISGV--AAAAGCQLVATCDLAIATTAS 161 (315)
Q Consensus 131 ~~~i~~v~G~--~~g~G~~f~~g~D~~~~~~~~ 161 (315)
.|.|+++.|. |+|++..+...+|+.++.+.+
T Consensus 137 vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a 169 (274)
T TIGR03133 137 VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEG 169 (274)
T ss_pred CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCc
Confidence 8999999999 899988888889999887664
No 344
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=82.54 E-value=5.5 Score=34.28 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCCcccccCCCC-ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHH
Q psy12573 46 NLPRHRLDAGTF-GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLML 124 (315)
Q Consensus 46 ~~~~n~~~~~~~-~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (315)
|-..-+++..+. |+||.-+...+..+++.+-.+ ..++|+++..|+.-+-=+-+.-+ .+......+.
T Consensus 123 pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGGARMQEg~lSLM------------QMaktsaAl~ 189 (294)
T COG0777 123 PVVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGGARMQEGILSLM------------QMAKTSAALK 189 (294)
T ss_pred EEEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcchhHhHHHHHHH------------HHHHHHHHHH
Confidence 333445554443 889988888888888776654 57999999988755421111100 0111223445
Q ss_pred HHHcCCCcEEEEEeeEEeccc-chhccccChhhhhhhcCC
Q psy12573 125 SILRHPVPILAIISGVAAAAG-CQLVATCDLAIATTASKF 163 (315)
Q Consensus 125 ~~~~~~~~~i~~v~G~~~g~G-~~f~~g~D~~~~~~~~~~ 163 (315)
.+.+...|.|++++..++||= ..|....|+.++.+.+..
T Consensus 190 ~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlI 229 (294)
T COG0777 190 RLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALI 229 (294)
T ss_pred HHHhcCCceEEEecCCCccchhHhHHhccCeeecCccccc
Confidence 566678899999999998873 568888899887666443
No 345
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=82.15 E-value=3.3 Score=32.93 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHhhhcCCCCeEEEE--EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEee
Q psy12573 62 VGLGFALAAALYCNHYAPGKRVVCV--QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISG 139 (315)
Q Consensus 62 ~~~~~~l~~~l~~~~~d~~~~vvvl--~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G 139 (315)
-.....+...|..++.++..+.|+| -+.|+..++|. .+++.+...+.|+++++.|
T Consensus 11 ~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~-----------------------~i~~~i~~~~~~v~~~~~g 67 (162)
T cd07013 11 DISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGM-----------------------AIYDTIKFIKADVVTIIDG 67 (162)
T ss_pred cHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHH-----------------------HHHHHHHhcCCCceEEEEe
Confidence 3445888888888888766555554 45554322222 2233445567788888899
Q ss_pred EEecccchhccccC--hhhhhhh
Q psy12573 140 VAAAAGCQLVATCD--LAIATTA 160 (315)
Q Consensus 140 ~~~g~G~~f~~g~D--~~~~~~~ 160 (315)
.+.+.|..+.+++| .+...+.
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~ 90 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPN 90 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecC
Confidence 99988888877788 3444434
No 346
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=81.58 E-value=3.7 Score=36.65 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG 145 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G 145 (315)
..+.+.|+.+..|++++.|+|.=+.+ |+.... ...+.+.+.++.... |+++.+.++++.||
T Consensus 83 ~~~~~~l~~~~~~~~vk~vvL~inSP----GG~v~a--------------s~~i~~~l~~l~~~~-PV~v~v~~~AASGG 143 (317)
T COG0616 83 DDIEEILRAARADPSVKAVVLRINSP----GGSVVA--------------SELIARALKRLRAKK-PVVVSVGGYAASGG 143 (317)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEECc----CCchhH--------------HHHHHHHHHHHhhcC-CEEEEECCeecchh
Confidence 77888888888999999998853321 111110 112233444444444 99999999999999
Q ss_pred chhccccChhhhhhhcCCCCcch
Q psy12573 146 CQLVATCDLAIATTASKFSTPGY 168 (315)
Q Consensus 146 ~~f~~g~D~~~~~~~~~~~~~~~ 168 (315)
...++++|-.++.+.+..+.-.+
T Consensus 144 Y~IA~aAd~I~a~p~si~GSIGV 166 (317)
T COG0616 144 YYIALAADKIVADPSSITGSIGV 166 (317)
T ss_pred hhhhccCCEEEecCCceeeecee
Confidence 99999999888877655444333
No 347
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=81.13 E-value=0.49 Score=39.41 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcC--CCcEEEEEeeEEec
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRH--PVPILAIISGVAAA 143 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~G~~~g 143 (315)
.++.++|+++..|+++++|+|+++ |.|+++.... ++...+.+. ++|+++.++|.+.+
T Consensus 16 ~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~~-----------------~l~~~i~~~~~~kpvia~v~g~a~s 74 (207)
T TIGR00706 16 EDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVASE-----------------EIYEKLKKLKAKKPVVASMGGVAAS 74 (207)
T ss_pred HHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHHH-----------------HHHHHHHHhcCCCCEEEEECCccch
Confidence 789999999999999999999986 4566654321 222333444 49999999999999
Q ss_pred ccchhccccChhhhhhhcCCCCcc
Q psy12573 144 AGCQLVATCDLAIATTASKFSTPG 167 (315)
Q Consensus 144 ~G~~f~~g~D~~~~~~~~~~~~~~ 167 (315)
+|..+++.||..++.+.+.++...
T Consensus 75 ~g~~la~aaD~i~a~p~a~vg~iG 98 (207)
T TIGR00706 75 GGYYIAMAADEIVANPGTITGSIG 98 (207)
T ss_pred HHHHHHhcCCEEEECCCCeEEeee
Confidence 999999999999988876554433
No 348
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=79.66 E-value=0.44 Score=37.81 Aligned_cols=80 Identities=14% Similarity=0.259 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecc
Q psy12573 65 GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAA 144 (315)
Q Consensus 65 ~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~ 144 (315)
..++.+.|.+++.|++++.|+|..+ |.|+++.... .+...+...++|+++.++|.+.++
T Consensus 13 ~~~l~~~l~~a~~d~~~~~ivl~~~----s~Gg~~~~~~-----------------~i~~~l~~~~kpvva~~~g~~~s~ 71 (161)
T cd00394 13 ADQLAAQIRFAEADNSVKAIVLEVN----TPGGRVDAGM-----------------NIVDALQASRKPVIAYVGGQAASA 71 (161)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEE----CCCcCHHHHH-----------------HHHHHHHHhCCCEEEEECChhHHH
Confidence 3999999999999999999999764 4455554321 233345566799999999999999
Q ss_pred cchhccccChhhhhhhcCCCC
Q psy12573 145 GCQLVATCDLAIATTASKFST 165 (315)
Q Consensus 145 G~~f~~g~D~~~~~~~~~~~~ 165 (315)
|..++++||.+++.+.+.+..
T Consensus 72 g~~la~~~d~~~~~~~a~~~~ 92 (161)
T cd00394 72 GYYIATAANKIVMAPGTRVGS 92 (161)
T ss_pred HHHHHhCCCEEEECCCCEEEE
Confidence 999999999999888776544
No 349
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=78.95 E-value=3.7 Score=33.06 Aligned_cols=76 Identities=9% Similarity=0.119 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhcCCCCeEEEE--EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEe---e
Q psy12573 65 GFALAAALYCNHYAPGKRVVCV--QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIIS---G 139 (315)
Q Consensus 65 ~~~l~~~l~~~~~d~~~~vvvl--~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~---G 139 (315)
..-+...+++++.|+ .+.|+| -+-|+...++. .+.+.+...+.|+++.+. |
T Consensus 15 ~~~l~~~l~~A~~~~-~~~i~l~inSPGG~v~~~~-----------------------~I~~~i~~~~~pvv~~v~p~g~ 70 (172)
T cd07015 15 YDQFDRYITIAEQDN-AEAIIIELDTPGGRADAAG-----------------------NIVQRIQQSKIPVIIYVYPPGA 70 (172)
T ss_pred HHHHHHHHHHHhcCC-CCeEEEEEECCCCCHHHHH-----------------------HHHHHHHhcCcCEEEEEecCCC
Confidence 367788888777654 555555 34343222221 223445567899999999 9
Q ss_pred EEecccchhccccChhhhhhhcCCC
Q psy12573 140 VAAAAGCQLVATCDLAIATTASKFS 164 (315)
Q Consensus 140 ~~~g~G~~f~~g~D~~~~~~~~~~~ 164 (315)
.+..+|..++.++|...+.+.+.++
T Consensus 71 ~AaSag~~I~~a~~~i~m~p~s~iG 95 (172)
T cd07015 71 SAASAGTYIALGSHLIAMAPGTSIG 95 (172)
T ss_pred eehhHHHHHHHhcCceEECCCCEEE
Confidence 9999999999999998877765543
No 350
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=78.53 E-value=5.4 Score=31.69 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=44.0
Q ss_pred HHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573 13 AAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 89 (315)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~ 89 (315)
++.+...+..+++..|..| |.....+++. |...++.+.++.... +...| ...++.+++++-|.
T Consensus 8 ~IA~~A~~~I~~~~~Ifld~GtT~~~la~~-L~~~~~ltVvTnsl~----------ia~~l---~~~~~~~vi~~GG~ 71 (161)
T PF00455_consen 8 AIARKAASLIEDGDTIFLDSGTTTLELAKY-LPDKKNLTVVTNSLP----------IANEL---SENPNIEVILLGGE 71 (161)
T ss_pred HHHHHHHHhCCCCCEEEEECchHHHHHHHH-hhcCCceEEEECCHH----------HHHHH---HhcCceEEEEeCCE
Confidence 4566667778888888888 7777888887 777778888887642 22333 33467788877663
No 351
>KOG0840|consensus
Probab=77.52 E-value=7 Score=33.27 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=51.5
Q ss_pred HHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCC-CCch--HH---H---------------
Q psy12573 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTP--AV---A--------------- 236 (315)
Q Consensus 178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~-~~~~--~~---~--------------- 236 (315)
.+..+..+.-||-..+.|.|.+.|.-|+.++ +..-++.+|..++=+- |.++ +. .
T Consensus 142 IYDtMq~ik~~V~Tic~G~Aas~aalLLaaG-----~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~ 216 (275)
T KOG0840|consen 142 IYDTMQYIKPDVSTICVGLAASMAALLLAAG-----AKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLN 216 (275)
T ss_pred HHHHHHhhCCCceeeehhhHHhHHHHHHhcC-----CCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHH
Confidence 4445556666676667788877666665554 3445666666655433 2221 00 0
Q ss_pred --HhhhcCH--HHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573 237 --LTRKVPL--GVVRSMTITGIPISAQDAYNAGLITRVVSS 273 (315)
Q Consensus 237 --l~~~~g~--~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~ 273 (315)
+++.-|. ....+-+-..+.++++||+++|+||.|...
T Consensus 217 ~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 217 EIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 0111111 122233344556899999999999999874
No 352
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=76.79 E-value=63 Score=31.03 Aligned_cols=79 Identities=15% Similarity=0.024 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy12573 8 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV 86 (315)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl 86 (315)
.++-.+++..|.+.+|+++.++.. ...--++-.+ ...+++...+++.+.+.++--+..++|.+.+. ..+.|.|
T Consensus 372 ~~~e~~~a~~l~~~lp~~~~LFvgNSmpVRdvd~~-~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a~-----~~ptv~l 445 (566)
T COG1165 372 ALTEAHLAAALADLLPPQDQLFVGNSMPVRDVDAL-GQLPAGYRVYSNRGASGIDGTVSTALGIARAT-----QKPTVAL 445 (566)
T ss_pred CchhhHHHHHHHHhCCCCCeEEEecCchhhhHHHh-ccCccCceeecCCCccccchhHHHHhhhhhhc-----CCceEEE
Confidence 455567888999999977766654 3222233333 33446667777777788887788899988863 3468999
Q ss_pred EcCCCc
Q psy12573 87 QGDSAF 92 (315)
Q Consensus 87 ~g~g~~ 92 (315)
+||=.+
T Consensus 446 iGDLS~ 451 (566)
T COG1165 446 IGDLSF 451 (566)
T ss_pred Eechhh
Confidence 998543
No 353
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=76.07 E-value=31 Score=29.77 Aligned_cols=77 Identities=27% Similarity=0.244 Sum_probs=43.7
Q ss_pred CCceEEeCCChhhHhhhhhhc-cCCCcccc-----------------cCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 24 DNCIIVGEGANTMDIGRSLLL-NNLPRHRL-----------------DAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~l~-~~~~~n~~-----------------~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
+.+.|+-|.+||.++..+ |. |.+.-..+ |.-..|.=+.++.++++-+.+.--..++.+||.
T Consensus 60 p~DkivwDvGHQ~Y~HKi-LTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVa 138 (270)
T PF13292_consen 60 PKDKIVWDVGHQAYVHKI-LTGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVA 138 (270)
T ss_dssp TTSEEEESSSTT-HHHHH-CTTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEE
T ss_pred CCCeEEEecccccchhhh-ccCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEE
Confidence 444556797888888877 33 33322222 112225556677788888877655557889999
Q ss_pred EEcCCCccccchhhhHH
Q psy12573 86 VQGDSAFGFSGMELETL 102 (315)
Q Consensus 86 l~g~g~~~~aG~Dl~~~ 102 (315)
+.|||. +.+|+-++.+
T Consensus 139 VIGDGa-lt~Gma~EAL 154 (270)
T PF13292_consen 139 VIGDGA-LTGGMAFEAL 154 (270)
T ss_dssp EEETTG-GGSHHHHHHH
T ss_pred EECCcc-hhHHHHHHHH
Confidence 999995 5567655443
No 354
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=74.55 E-value=11 Score=33.23 Aligned_cols=89 Identities=13% Similarity=0.172 Sum_probs=54.3
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCcccc-chhhhHHhhhccCchhHHHHHHHHHHHHHHHH-cCCCcEEE
Q psy12573 58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETLAVDKEGRPKLDEIFSTCSDLMLSIL-RHPVPILA 135 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~a-G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 135 (315)
|+||......+..+++.+.. ....+|++...|+..+- |.. .+ .. +......+.... ....|.|+
T Consensus 147 GSmG~v~geKi~ra~e~A~~-~rlPlV~l~~SGGARmQEg~~--sL----------~q-mak~saa~~~~~~~~~vP~Is 212 (296)
T CHL00174 147 GSMGSVVGEKITRLIEYATN-ESLPLIIVCASGGARMQEGSL--SL----------MQ-MAKISSALYDYQSNKKLFYIS 212 (296)
T ss_pred cCcCHHHHHHHHHHHHHHHH-cCCCEEEEECCCCccccccch--hh----------hh-hHHHHHHHHHHHHcCCCCEEE
Confidence 88888888888888776555 45788888766654331 110 00 00 001111122222 45689999
Q ss_pred EEeeEEecccc-hhccccChhhhhhh
Q psy12573 136 IISGVAAAAGC-QLVATCDLAIATTA 160 (315)
Q Consensus 136 ~v~G~~~g~G~-~f~~g~D~~~~~~~ 160 (315)
++.|.++|++. .|...+|+.++.+.
T Consensus 213 vl~gPt~GG~aas~a~l~Diiiae~~ 238 (296)
T CHL00174 213 ILTSPTTGGVTASFGMLGDIIIAEPN 238 (296)
T ss_pred EEcCCCchHHHHHHHHcccEEEEeCC
Confidence 99999998874 45556899876544
No 355
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=73.03 E-value=7.2 Score=31.29 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhhhcCCCCeEEEE--EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeE
Q psy12573 63 GLGFALAAALYCNHYAPGKRVVCV--QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGV 140 (315)
Q Consensus 63 ~~~~~l~~~l~~~~~d~~~~vvvl--~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~ 140 (315)
.....+...|..++.++..+.|.| -+-|+...+|.- +...+...+.++.+.+.|.
T Consensus 21 ~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~-----------------------i~~~l~~~~~~v~t~~~g~ 77 (171)
T cd07017 21 EVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLA-----------------------IYDTMQYIKPPVSTICLGL 77 (171)
T ss_pred HHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHH-----------------------HHHHHHhcCCCEEEEEEeE
Confidence 333777788877776654333333 455543333322 2223344578888889999
Q ss_pred EecccchhccccC--hhhhhhhc
Q psy12573 141 AAAAGCQLVATCD--LAIATTAS 161 (315)
Q Consensus 141 ~~g~G~~f~~g~D--~~~~~~~~ 161 (315)
+.+.|..+.+++| -+.+.+.+
T Consensus 78 aaS~~~~i~~~g~~~~r~~~~~a 100 (171)
T cd07017 78 AASMGALLLAAGTKGKRYALPNS 100 (171)
T ss_pred ehhHHHHHHHcCCCCCEEEccch
Confidence 9999888788888 45555443
No 356
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=70.57 E-value=76 Score=28.04 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=62.6
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEE-
Q psy12573 58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAI- 136 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 136 (315)
+.+|..+|-+.|.++..-....+.-+|++.|||. ++=+++.+... +..+ ..-|+|.+
T Consensus 101 ~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga--~~qG~~~EalN------------------~A~~--~~lPvifvv 158 (300)
T PF00676_consen 101 SPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGA--TSQGDFHEALN------------------LAAL--WKLPVIFVV 158 (300)
T ss_dssp SSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGG--GGSHHHHHHHH------------------HHHH--TTTSEEEEE
T ss_pred ccccccCccccchhHhhhhcCCceeEEEEecCcc--cccCccHHHHH------------------HHhh--ccCCeEEEE
Confidence 6677788888898887665666666788899986 44334333221 1112 33455544
Q ss_pred -EeeEEecccchh-ccccChhhhhhhcCCCCcchh-------hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573 137 -ISGVAAAAGCQL-VATCDLAIATTASKFSTPGYN-------ILVSTCSDLMLSILRHPVPILAIISGVAAA 199 (315)
Q Consensus 137 -v~G~~~g~G~~f-~~g~D~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g 199 (315)
=|++.+.....- +..-++...+.. ++.|... ..+......+...++..+|++..+..+-+.
T Consensus 159 eNN~~aist~~~~~~~~~~~~~~a~~--~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~ 228 (300)
T PF00676_consen 159 ENNQYAISTPTEEQTASPDIADRAKG--YGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLR 228 (300)
T ss_dssp EEESEETTEEHHHHCSSSTSGGGGGG--TTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS
T ss_pred ecCCcccccCccccccccchhhhhhc--cCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCC
Confidence 344433332211 222233332222 4555432 334445566667788899998887776654
No 357
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=70.23 E-value=43 Score=29.13 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG 145 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G 145 (315)
..+..++.....+..+ .+++..-| +++.... +....+.+.+.++.+.|...++.+|
T Consensus 78 e~v~raI~~~~~~~~I-dLii~TpG------G~v~AA~-----------------~I~~~l~~~~~~v~v~VP~~A~SAG 133 (285)
T PF01972_consen 78 EFVLRAIREAPKDKPI-DLIIHTPG------GLVDAAE-----------------QIARALREHPAKVTVIVPHYAMSAG 133 (285)
T ss_pred HHHHHHHHhcCCCCce-EEEEECCC------CcHHHHH-----------------HHHHHHHhCCCCEEEEECcccccHH
Confidence 8888888877655443 33343333 3433321 2333455678889999999999999
Q ss_pred chhccccChhhhhhhcCCCCcchh
Q psy12573 146 CQLVATCDLAIATTASKFSTPGYN 169 (315)
Q Consensus 146 ~~f~~g~D~~~~~~~~~~~~~~~~ 169 (315)
.-++.++|--++.+.+..+..+-.
T Consensus 134 TlIALaADeIvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 134 TLIALAADEIVMGPGAVLGPIDPQ 157 (285)
T ss_pred HHHHHhCCeEEECCCCccCCCCcc
Confidence 999999999998888777644443
No 358
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=70.09 E-value=14 Score=32.31 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=56.9
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q psy12573 58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAII 137 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 137 (315)
|+||......+..+++.+.+ ..+.+|.|+-.|++.+. +-. .... .+......+..+.....|.|+++
T Consensus 134 GSmg~~~geKi~r~~e~A~~-~~lPlV~l~dSgGaRmq-----Eg~------~sL~-~~ak~~~~~~~~~~~~vP~IsVv 200 (285)
T TIGR00515 134 GSMGSVVGEKFVRAIEKALE-DNCPLIIFSASGGARMQ-----EAL------LSLM-QMAKTSAALAKMSERGLPYISVL 200 (285)
T ss_pred CCccHHHHHHHHHHHHHHHH-cCCCEEEEEcCCCcccc-----cch------hHHH-hHHHHHHHHHHHHcCCCCEEEEE
Confidence 88888887888777766554 56788888776665321 100 0000 01111223344555678999999
Q ss_pred eeEEeccc-chhccccChhhhhhhc
Q psy12573 138 SGVAAAAG-CQLVATCDLAIATTAS 161 (315)
Q Consensus 138 ~G~~~g~G-~~f~~g~D~~~~~~~~ 161 (315)
.|.++|++ ..|...+|+.++.+.+
T Consensus 201 ~gpt~GG~aas~a~~~D~iia~p~A 225 (285)
T TIGR00515 201 TDPTTGGVSASFAMLGDLNIAEPKA 225 (285)
T ss_pred eCCcchHHHHHHHhCCCEEEEECCe
Confidence 99999986 4466678987766553
No 359
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=69.23 E-value=12 Score=32.22 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=39.8
Q ss_pred HHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573 13 AAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 89 (315)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~ 89 (315)
++.+...+..+++..|+.| |.....+++. |....+.+.++.... +... +...++++++++-|.
T Consensus 81 ~IA~~Aa~lI~~g~tIflD~GtT~~~la~~-L~~~~~ltvvTnsl~----------i~~~---l~~~~~~~villGG~ 144 (252)
T PRK10681 81 RAAQLAATLVEPNQTLFFDCGTTTPWIIEA-IDNELPFTAVCYSLN----------TFLA---LQEKPHCRAILCGGE 144 (252)
T ss_pred HHHHHHHhhcCCCCEEEEECCccHHHHHHh-cCCCCCeEEEECCHH----------HHHH---HhhCCCCEEEEECcE
Confidence 3555566777787777778 7777888887 655456778876432 2223 333477887655543
No 360
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=68.70 E-value=20 Score=31.86 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=38.2
Q ss_pred cchHHHHHHHHHHhhhcCC---CCeEEEE-EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEE
Q psy12573 61 GVGLGFALAAALYCNHYAP---GKRVVCV-QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAI 136 (315)
Q Consensus 61 g~~~~~~l~~~l~~~~~d~---~~~vvvl-~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 136 (315)
|-+-+.++..+|..+.... +..|||| +|.|+. -||..|-. ..+...+..++.|+|.+
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~----eDL~~FN~---------------e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI----EDLWAFND---------------EEVARAIAASPIPVISA 113 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecCCCCh----HHhcccCh---------------HHHHHHHHhCCCCEEEe
Confidence 5566799999999997654 4566665 665542 24433321 24556788999999975
Q ss_pred E
Q psy12573 137 I 137 (315)
Q Consensus 137 v 137 (315)
|
T Consensus 114 I 114 (319)
T PF02601_consen 114 I 114 (319)
T ss_pred c
Confidence 4
No 361
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=67.89 E-value=46 Score=30.37 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=33.7
Q ss_pred CCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC
Q psy12573 46 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 91 (315)
Q Consensus 46 ~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~ 91 (315)
.+..|++... +.+|.++|-+++.+++.-.+..+..++++.|||.
T Consensus 128 ~~~~~~~~~~--~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa 171 (362)
T PLN02269 128 KKDANFYGGH--GIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGA 171 (362)
T ss_pred chhcCccccC--chhhccccHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 3445666443 7789999999999998665556778999999996
No 362
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=67.82 E-value=1.2e+02 Score=29.75 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=30.1
Q ss_pred CCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccch
Q psy12573 56 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGM 97 (315)
Q Consensus 56 ~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~ 97 (315)
..+..|.+++.++|-+++.-....+.++|++.|||. ++.|.
T Consensus 111 ~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~-~~eG~ 151 (581)
T PRK12315 111 TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGS-LSGGL 151 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchh-hhcch
Confidence 446677788999999887544455678999999996 33343
No 363
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=66.70 E-value=16 Score=29.54 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=29.5
Q ss_pred HHHHHcCCCcEEEEEeeEEecccchhccccCh--hhhhhhcCC
Q psy12573 123 MLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKF 163 (315)
Q Consensus 123 ~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~--~~~~~~~~~ 163 (315)
...+...+.|+.+.+.|.+.+.+..+.++++. |.+.+.+.|
T Consensus 67 ~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~ 109 (182)
T PF00574_consen 67 YDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRF 109 (182)
T ss_dssp HHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EE
T ss_pred HHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEE
Confidence 34456678899999999999988777777887 466666554
No 364
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=66.65 E-value=27 Score=29.79 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=50.8
Q ss_pred ccchHHHHHHHHHHhh-hcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEe
Q psy12573 60 MGVGLGFALAAALYCN-HYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIIS 138 (315)
Q Consensus 60 mg~~~~~~l~~~l~~~-~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 138 (315)
+|..-...+...+... +++.++.+|.|.=..+ |..|.+=+.. .....+..+-..+......+.|+|++|.
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~aE~~--------G~~~a~A~l~~a~a~a~~~~vP~IsvI~ 115 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRREELL--------GINQALAHLAKALALARLAGHPVIGLIY 115 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHHHHHH--------HHHHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 3433334444455443 4457888888876654 3333321111 1122223333444555566799999999
Q ss_pred eEEecccc-hhccccChhhhhhhc
Q psy12573 139 GVAAAAGC-QLVATCDLAIATTAS 161 (315)
Q Consensus 139 G~~~g~G~-~f~~g~D~~~~~~~~ 161 (315)
|...|+|. .++.+.|...+-+.+
T Consensus 116 g~a~ggg~lamg~~ad~v~Alp~A 139 (238)
T TIGR03134 116 GKAISGAFLAHGLQADRIIALPGA 139 (238)
T ss_pred CCccHHHHHHHccCcCeEEEcCCc
Confidence 98887763 344457776655543
No 365
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=66.08 E-value=77 Score=30.37 Aligned_cols=142 Identities=13% Similarity=0.192 Sum_probs=81.2
Q ss_pred cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHhh
Q psy12573 128 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVAT 207 (315)
Q Consensus 128 ~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~ 207 (315)
...-|.+..++- .+|..|.+.. ..+.+.....++.++.....|.|..+.|.+.|+|...+..
T Consensus 357 ~~~iPlv~L~d~------pGFm~G~~~E------------~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~ 418 (526)
T COG4799 357 AFNIPLVFLVDT------PGFMPGTDQE------------YGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGG 418 (526)
T ss_pred ccCCCeEEEeCC------CCCCCChhHH------------hChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecC
Confidence 345677766553 4555554432 1256666667888888999999999999999977554332
Q ss_pred cCeeeeeCCceeeCCCccCCCCCCchH--HHHhhhcCH---HHH-----HH-HH--hcCCCCCHHHHHHcCccccccCCc
Q psy12573 208 CDLAIATTASKFSTPGARHGIFCSTPA--VALTRKVPL---GVV-----RS-MT--ITGIPISAQDAYNAGLITRVVSSN 274 (315)
Q Consensus 208 ~d~~~a~~~a~~~~pe~~~Gl~~~~~~--~~l~~~~g~---~~a-----~~-~~--~~g~~~~a~~a~~~Glv~~v~~~~ 274 (315)
-.+ - .+-.|..|..+++..-..++ ....+.+.. ... ++ +. +.-+...+.-+.+.|+++.+++.
T Consensus 419 ~~~-~--~~~~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p- 494 (526)
T COG4799 419 KAL-G--PDFNYAWPTAEIAVMGPEGAVSILYRKELAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDP- 494 (526)
T ss_pred ccC-C--CceeEecCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCH-
Confidence 111 1 44556667777776532222 122122211 000 01 11 11122455667889999999998
Q ss_pred hHHHHHHHHHHHHHHhC
Q psy12573 275 EELESETKVLTSAILEN 291 (315)
Q Consensus 275 ~~~~~~~~~~~~~l~~~ 291 (315)
.+...........+..+
T Consensus 495 ~~tR~~L~~~l~~~~~k 511 (526)
T COG4799 495 ADTRAVLGRALSALANK 511 (526)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 66666555555554443
No 366
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=65.69 E-value=4.2 Score=34.21 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=31.9
Q ss_pred CCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh
Q psy12573 129 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN 169 (315)
Q Consensus 129 ~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~ 169 (315)
.++|+++.+++ +.++|..+++.||..++.+.+.++...+.
T Consensus 77 ~~kpVia~~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~ 116 (222)
T cd07018 77 SGKPVIAYADG-YSQGQYYLASAADEIYLNPSGSVELTGLS 116 (222)
T ss_pred hCCeEEEEeCC-CCchhhhhhhhCCEEEECCCceEEeeccc
Confidence 47899999997 67788889999999988887766655444
No 367
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=61.44 E-value=25 Score=30.94 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=55.7
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q psy12573 58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAII 137 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 137 (315)
|+||.....-+..+++.... ..+.+|.|.-.|++. +.+-. -... .+......+..+.....|.|+++
T Consensus 135 GS~g~~~~eKi~r~~e~A~~-~~lPlV~l~dsgGar-----mqEgi------~sL~-~~ak~~~a~~~~~~a~vP~IsVv 201 (292)
T PRK05654 135 GSMGSVVGEKIVRAVERAIE-EKCPLVIFSASGGAR-----MQEGL------LSLM-QMAKTSAALKRLSEAGLPYISVL 201 (292)
T ss_pred CCccHHHHHHHHHHHHHHHH-cCCCEEEEEcCCCcc-----hhhhh------hHHH-hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78888877888777776555 467888887655532 11100 0000 01112223334555678999999
Q ss_pred eeEEeccc-chhccccChhhhhhh
Q psy12573 138 SGVAAAAG-CQLVATCDLAIATTA 160 (315)
Q Consensus 138 ~G~~~g~G-~~f~~g~D~~~~~~~ 160 (315)
.|.++|++ ..|...+|+.++.+.
T Consensus 202 ~gpt~GG~aas~a~~~D~iia~p~ 225 (292)
T PRK05654 202 TDPTTGGVSASFAMLGDIIIAEPK 225 (292)
T ss_pred eCCCchHHHHHHHHcCCEEEEecC
Confidence 99999985 346667898776554
No 368
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=60.56 E-value=30 Score=28.51 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhhhc-CCCCeE-EEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeE
Q psy12573 63 GLGFALAAALYCNHY-APGKRV-VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGV 140 (315)
Q Consensus 63 ~~~~~l~~~l~~~~~-d~~~~v-vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~ 140 (315)
++...+...|..++. ++...+ +.|-+-|+...+|..+ ++.+...+.|+++++.|.
T Consensus 35 ~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI-----------------------~d~i~~~~~~V~t~v~G~ 91 (197)
T PRK14512 35 DLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAI-----------------------FNMIRFVKPKVFTIGVGL 91 (197)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHH-----------------------HHHHHhCCCCEEEEEEee
Confidence 334677777766665 333233 3345555544444332 233455677899999999
Q ss_pred EecccchhccccCh
Q psy12573 141 AAAAGCQLVATCDL 154 (315)
Q Consensus 141 ~~g~G~~f~~g~D~ 154 (315)
+.+.|..+.+++|-
T Consensus 92 AaSaaslIl~ag~~ 105 (197)
T PRK14512 92 VASAAALIFLAAKK 105 (197)
T ss_pred eHhHHHHHHhcCCc
Confidence 99888777777764
No 369
>smart00250 PLEC Plectin repeat.
Probab=58.88 E-value=8.5 Score=22.22 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=16.4
Q ss_pred cCCCCCHHHHHHcCcccc
Q psy12573 252 TGIPISAQDAYNAGLITR 269 (315)
Q Consensus 252 ~g~~~~a~~a~~~Glv~~ 269 (315)
++++++..||.+.|+++.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 789999999999999975
No 370
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=58.86 E-value=22 Score=35.13 Aligned_cols=32 Identities=41% Similarity=0.529 Sum_probs=24.3
Q ss_pred CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCc
Q psy12573 57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF 92 (315)
Q Consensus 57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~ 92 (315)
.++||++++.+++..+.. ++.+++++.|||..
T Consensus 122 ~gslg~a~G~A~a~~~~~----~~~~v~~v~GDG~~ 153 (641)
T PRK12571 122 STSISAALGFAKARALGQ----PDGDVVAVIGDGSL 153 (641)
T ss_pred cChHHHHHHHHHHHHHhC----CCCeEEEEEeCchh
Confidence 345777777777777653 67899999999974
No 371
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=58.41 E-value=9.9 Score=32.07 Aligned_cols=30 Identities=37% Similarity=0.618 Sum_probs=26.7
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC
Q psy12573 58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 91 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~ 91 (315)
+.+|++++-+++.+++ +++..++|+.|||.
T Consensus 62 G~LG~gLs~A~G~a~d----~~d~iv~~vvGDGE 91 (227)
T cd02011 62 GELGYSLSHAYGAVFD----NPDLIVACVVGDGE 91 (227)
T ss_pred cchhhHHHHHHHhhhc----CCCcEEEEEECcCH
Confidence 8899999999999875 47889999999996
No 372
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=58.06 E-value=28 Score=32.62 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHHHhhhcCCCCeEEEE-EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q psy12573 60 MGVGLGFALAAALYCNHYAPGKRVVCV-QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAII 137 (315)
Q Consensus 60 mg~~~~~~l~~~l~~~~~d~~~~vvvl-~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 137 (315)
=|-+-+.++..++..++..++..|||| +|.|.. -||..|-. ..+...+..++.|+|.+|
T Consensus 167 QG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~----eDL~~Fn~---------------e~~~rai~~~~~Pvis~i 226 (432)
T TIGR00237 167 QGEGAVQSIVESIELANTKNECDVLIVGRGGGSL----EDLWSFND---------------EKVARAIFLSKIPIISAV 226 (432)
T ss_pred cCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCH----HHhhhcCc---------------HHHHHHHHcCCCCEEEec
Confidence 466667999999998887666667666 565531 34443321 245567889999999754
No 373
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=57.59 E-value=40 Score=29.08 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=47.6
Q ss_pred CCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh
Q psy12573 79 PGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT 158 (315)
Q Consensus 79 ~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~ 158 (315)
-++.+|-|.=.++++ .|.+-. .......+...+..+.....|+|++|-|.+.|+|..-...+|+..+.
T Consensus 97 ~~lPvV~lvDtpGa~-~g~~aE-----------~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~ 164 (256)
T PRK12319 97 FGRPVVTFINTAGAY-PGVGAE-----------ERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWML 164 (256)
T ss_pred cCCCEEEEEECCCcC-CCHhHH-----------hccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEe
Confidence 567888886555433 333311 01112234455666778899999999999977776656688998887
Q ss_pred hhcCCC
Q psy12573 159 TASKFS 164 (315)
Q Consensus 159 ~~~~~~ 164 (315)
+.+.++
T Consensus 165 ~~a~~~ 170 (256)
T PRK12319 165 ENTMYA 170 (256)
T ss_pred cCceEE
Confidence 765443
No 374
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=57.35 E-value=32 Score=30.65 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=45.6
Q ss_pred CCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh
Q psy12573 79 PGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT 158 (315)
Q Consensus 79 ~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~ 158 (315)
-.+++|.|.=..+ ++.|.+-.+. .....+...+..+.....|+|++|.|.+.|+|..-...+|+..+.
T Consensus 150 f~iPvVtlvDTpG-a~~g~~aE~~-----------G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~ 217 (316)
T TIGR00513 150 FKMPIITFIDTPG-AYPGIGAEER-----------GQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNML 217 (316)
T ss_pred cCCCEEEEEECCC-CCCCHHHHHH-----------HHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEe
Confidence 5678887765554 3334332211 112234455666778899999999998866554333358998877
Q ss_pred hhcCCC
Q psy12573 159 TASKFS 164 (315)
Q Consensus 159 ~~~~~~ 164 (315)
+.+.++
T Consensus 218 ~~a~~s 223 (316)
T TIGR00513 218 EYSTYS 223 (316)
T ss_pred cCceEE
Confidence 775543
No 375
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=56.50 E-value=1.2e+02 Score=30.26 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=29.2
Q ss_pred CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC
Q psy12573 57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 91 (315)
Q Consensus 57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~ 91 (315)
-|+.|.+++.+++-+++.--+..+.+++++.|||.
T Consensus 143 ~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~ 177 (677)
T PLN02582 143 TGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGA 177 (677)
T ss_pred cchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 47788889999999887655567789999999996
No 376
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=56.19 E-value=1.5e+02 Score=26.91 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=69.4
Q ss_pred CCcccccCCCCccccchHHHHHHHHHHhhhcC-CCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHH
Q psy12573 47 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYA-PGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLS 125 (315)
Q Consensus 47 ~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d-~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (315)
+..|.+... +..|..+|.+.+.+++.--.+ .+.-++++.|||. .+=+|+.+.. | +..
T Consensus 127 ~~~~~~~~~--~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGa--t~qG~FhEal-------------N-----~A~ 184 (358)
T COG1071 127 KEKGFLGGS--GIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGA--TNQGDFHEAL-------------N-----FAA 184 (358)
T ss_pred cccccCCCC--ceecccccHHHHHHHHHHHhCCCCcEEEEEecCCc--cccchHHHHH-------------H-----HHH
Confidence 334555443 668888999999999765555 3335788899995 3333333221 0 112
Q ss_pred HHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-------hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-------ILVSTCSDLMLSILRHPVPILAIISGVAA 198 (315)
Q Consensus 126 ~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~kpvIa~v~G~~~ 198 (315)
+.+.|...++-=|+++++....+.+..++-. .....|+.|.+. .............++-..|++....=+..
T Consensus 185 v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~-~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~ 263 (358)
T COG1071 185 VWKLPVVFVIENNQYAISVPRSRQTAAEIIA-ARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRY 263 (358)
T ss_pred HhcCCEEEEEecCCceeecchhhcccchhHH-hhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeec
Confidence 2333333334445665654444333333211 133345666554 22333445555666677888776665555
Q ss_pred h
Q psy12573 199 A 199 (315)
Q Consensus 199 g 199 (315)
+
T Consensus 264 ~ 264 (358)
T COG1071 264 G 264 (358)
T ss_pred C
Confidence 4
No 377
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=54.92 E-value=22 Score=29.56 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=50.9
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCe-E-EEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEE
Q psy12573 58 GTMGVGLGFALAAALYCNHYAPGKR-V-VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILA 135 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~d~~~~-v-vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 135 (315)
+.++-.....+...|..++..+..+ + |.|-+-|+...+|.- +++.+...+.|+++
T Consensus 42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~-----------------------I~d~i~~~~~~v~t 98 (207)
T PRK12553 42 GQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDA-----------------------IYDTIQFIRPDVQT 98 (207)
T ss_pred ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHH-----------------------HHHHHHhcCCCcEE
Confidence 4555666688888888887644223 3 333455543333322 23334556678888
Q ss_pred EEeeEEecccchhccccCh--hhhhhhcCC
Q psy12573 136 IISGVAAAAGCQLVATCDL--AIATTASKF 163 (315)
Q Consensus 136 ~v~G~~~g~G~~f~~g~D~--~~~~~~~~~ 163 (315)
++.|.+.+.|..+.+++|- +.+.+.+.+
T Consensus 99 ~~~G~aaSaa~lI~~ag~~~~R~~~p~s~i 128 (207)
T PRK12553 99 VCTGQAASAGAVLLAAGTPGKRFALPNARI 128 (207)
T ss_pred EEEeehhhHHHHHHHcCCcCcEEECCCchh
Confidence 8999999888777777773 555555443
No 378
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=54.59 E-value=32 Score=29.55 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573 13 AAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 89 (315)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~ 89 (315)
++.+......+++..|+.| |.....+++. |....+.+.++.... +...|. ..++++++++-|.
T Consensus 80 ~IA~~Aa~~I~~g~tIflD~GtT~~~la~~-L~~~~~ltVvTNsl~----------ia~~l~---~~~~~~villGG~ 143 (252)
T PRK10906 80 RIARKVASQIPNGATLFIDIGTTPEAVAHA-LLNHSNLRIVTNNLN----------VANTLM---AKEDFRIILAGGE 143 (252)
T ss_pred HHHHHHHhhCCCCCEEEEcCcHHHHHHHHH-hcCCCCcEEEECcHH----------HHHHHh---hCCCCEEEEECCE
Confidence 3455556677788888888 6666777777 644445677776432 222332 3477787665443
No 379
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=54.36 E-value=13 Score=33.50 Aligned_cols=30 Identities=37% Similarity=0.625 Sum_probs=25.1
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC
Q psy12573 58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 91 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~ 91 (315)
|-+||++..+++++++. |+.-++++.|||.
T Consensus 140 GELGYaLshA~GA~~Dn----Pdliv~~vvGDGE 169 (379)
T PF09364_consen 140 GELGYALSHAFGAVFDN----PDLIVACVVGDGE 169 (379)
T ss_dssp SSTS-HHHHHHHHHTT-----TT-EEEEEEETTG
T ss_pred cchhhHHHHHhhcccCC----CCeEEEEEecCCc
Confidence 77999999999999985 9999999999997
No 380
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=52.79 E-value=52 Score=29.41 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=49.8
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG 145 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G 145 (315)
.-....+..+++ -.+++|-|.-..+++. |.+-.+ +.....+...+..+.....|+|++|.|.+.|+|
T Consensus 141 rKa~Rlm~lA~~-f~lPIItlvDTpGA~~-G~~AE~-----------~G~~~aiar~l~~~a~~~VP~IsVViGeggsGG 207 (322)
T CHL00198 141 RKALRLMKHANK-FGLPILTFIDTPGAWA-GVKAEK-----------LGQGEAIAVNLREMFSFEVPIICTIIGEGGSGG 207 (322)
T ss_pred HHHHHHHHHHHH-cCCCEEEEEeCCCcCc-CHHHHH-----------HhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHH
Confidence 333333433333 5678887765555433 432111 111223445556677889999999999987666
Q ss_pred chhccccChhhhhhhcCCC
Q psy12573 146 CQLVATCDLAIATTASKFS 164 (315)
Q Consensus 146 ~~f~~g~D~~~~~~~~~~~ 164 (315)
..-...+|+..+.+.+.++
T Consensus 208 Alal~~aD~V~m~e~a~~s 226 (322)
T CHL00198 208 ALGIGIGDSIMMLEYAVYT 226 (322)
T ss_pred HHhhhcCCeEEEeCCeEEE
Confidence 4333458998877765543
No 381
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=51.61 E-value=39 Score=29.37 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=38.1
Q ss_pred HHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573 14 AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD 89 (315)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~ 89 (315)
+.+...+...++..|+.| |.....+++. |....+.+.++.... +...|. ..++++++++-|.
T Consensus 96 IA~~Aa~~I~dgd~Ifld~GtT~~~la~~-L~~~~~ltVvTnsl~----------ia~~l~---~~~~~~v~llGG~ 158 (269)
T PRK09802 96 VAKAAVELIQPGHRVILDSGTTTFEIARL-MRKHTDVIAMTNGMN----------VANALL---EAEGVELLMTGGH 158 (269)
T ss_pred HHHHHHhhCCCCCEEEECCchHHHHHHHh-cCcCCCeEEEeCCHH----------HHHHHH---hCCCCEEEEECCE
Confidence 455556677777777888 7766777777 643345677776532 223332 2477787766554
No 382
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=51.21 E-value=38 Score=28.84 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy12573 14 AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 88 (315)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g 88 (315)
+.+...+...+++.|+.| |.....++++ |... +.+.++.... +...| ...++++++++-|
T Consensus 83 IA~~Aa~lI~~gd~Ifld~GtT~~~l~~~-L~~~-~ltVvTNs~~----------ia~~l---~~~~~~~vil~GG 143 (240)
T PRK10411 83 IAREALAWIEEGMVIALDASSTCWYLARQ-LPDI-NIQVFTNSHP----------ICQEL---GKRERIQLISSGG 143 (240)
T ss_pred HHHHHHHhCCCCCEEEEcCcHHHHHHHHh-hCCC-CeEEEeCCHH----------HHHHH---hcCCCCEEEEECC
Confidence 555666777888888888 6666677776 6533 5677776432 22233 3347788765555
No 383
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=50.66 E-value=1.8e+02 Score=25.71 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=24.2
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccc
Q psy12573 58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGF 94 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~ 94 (315)
..+|.+.+.+.+-.++. ++..||++.|||..+.
T Consensus 70 s~~gra~a~atGik~A~----~~l~Viv~gGDG~~~d 102 (294)
T COG1013 70 SLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYD 102 (294)
T ss_pred eccCcchhhHHHHHHhc----cCCeEEEEecchhHhh
Confidence 44566666777777664 7889999999997554
No 384
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=50.06 E-value=2.5e+02 Score=27.75 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=30.2
Q ss_pred CCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC
Q psy12573 56 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 91 (315)
Q Consensus 56 ~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~ 91 (315)
..|+.|.+++.+++.+++.-.+.++.+++++.|||.
T Consensus 109 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~ 144 (617)
T TIGR00204 109 SAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGA 144 (617)
T ss_pred CCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcc
Confidence 347788899999999997766667889999999996
No 385
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=49.81 E-value=34 Score=30.50 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=46.6
Q ss_pred CCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh
Q psy12573 79 PGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT 158 (315)
Q Consensus 79 ~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~ 158 (315)
-.+++|.|.=..+++ .|.+-.+ ......+...+..+.....|+|++|-|.+.|+|..-...+|+..+.
T Consensus 150 f~lPIVtlvDTpGa~-~G~~aE~-----------~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~ 217 (319)
T PRK05724 150 FGLPIITFIDTPGAY-PGIGAEE-----------RGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLML 217 (319)
T ss_pred cCCCEEEEEeCCCCC-CCHHHHh-----------ccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeee
Confidence 567888886655533 3433211 1112334566677788999999999998866654333458988877
Q ss_pred hhcCCC
Q psy12573 159 TASKFS 164 (315)
Q Consensus 159 ~~~~~~ 164 (315)
+.+.++
T Consensus 218 ~~A~~s 223 (319)
T PRK05724 218 EYSTYS 223 (319)
T ss_pred cCceEe
Confidence 765543
No 386
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=49.77 E-value=60 Score=26.79 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=46.7
Q ss_pred ccccchHHHHHHHHHHhhhcCCC-CeE-EEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEE
Q psy12573 58 GTMGVGLGFALAAALYCNHYAPG-KRV-VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILA 135 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~d~~-~~v-vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 135 (315)
+.++-.+...+...|..++.++. ..+ +.|-+.|+...+|.- +++.+...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~-----------------------I~d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLA-----------------------IYDTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHH-----------------------HHHHHHhcCCCEEE
Confidence 44455555777777777765432 233 333455543322222 22334455678888
Q ss_pred EEeeEEecccchhccccC--hhhhhhhcCC
Q psy12573 136 IISGVAAAAGCQLVATCD--LAIATTASKF 163 (315)
Q Consensus 136 ~v~G~~~g~G~~f~~g~D--~~~~~~~~~~ 163 (315)
++.|.+.+.|..+.++++ .+.+.+.+.+
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~i 124 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRI 124 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceE
Confidence 999999998876655433 4555544443
No 387
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=48.73 E-value=82 Score=31.46 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=46.4
Q ss_pred CCCceEEeCCChhhHhhhhhhccC-CCc-----cc-----------ccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573 23 PDNCIIVGEGANTMDIGRSLLLNN-LPR-----HR-----------LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC 85 (315)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~l~~~-~~~-----n~-----------~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv 85 (315)
|.|. |+-|.+||.++..+ |.-. +.- +- .|.-..|.=+.++..+++-+.+.--...+.+||.
T Consensus 139 p~Dk-iiwDvgHQ~Y~HKi-LTGR~~~f~~Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vva 216 (701)
T PLN02225 139 PVDN-ILWDAVEQTYAHKV-LTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVA 216 (701)
T ss_pred CCCc-eeeccccccchhhH-hcCChhhcCccccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 4455 55687788777776 4321 111 11 1112224445567788887776555556779999
Q ss_pred EEcCCCccccchhhhHH
Q psy12573 86 VQGDSAFGFSGMELETL 102 (315)
Q Consensus 86 l~g~g~~~~aG~Dl~~~ 102 (315)
+.|||. +.+|+-++.+
T Consensus 217 VIGDGa-ltgGma~EaL 232 (701)
T PLN02225 217 VIDNAT-ITAGQAYEAM 232 (701)
T ss_pred EEcCcc-hhhhhHHHHH
Confidence 999995 5667765544
No 388
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=47.59 E-value=25 Score=29.51 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=30.6
Q ss_pred CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC
Q psy12573 57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 91 (315)
Q Consensus 57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~ 91 (315)
-|++|.+++-+.+-++..--+..+.+|-|+.|||.
T Consensus 118 tGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGE 152 (243)
T COG3959 118 TGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGE 152 (243)
T ss_pred CCcccccchHHHHHHHHHhhcCCCceEEEEecCcc
Confidence 38899999999999988766778899999999996
No 389
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=45.62 E-value=7.5 Score=23.47 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=15.6
Q ss_pred hcCCCCCHHHHHHcCcccc
Q psy12573 251 ITGIPISAQDAYNAGLITR 269 (315)
Q Consensus 251 ~~g~~~~a~~a~~~Glv~~ 269 (315)
.+|++++.++|.+.|+++.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 3678899999999999985
No 390
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=45.27 E-value=54 Score=28.11 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=36.1
Q ss_pred HHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy12573 14 AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG 88 (315)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g 88 (315)
+.+......++++.|+.| |.....++.. |... +.+.++.... +...|. ..++++++++-|
T Consensus 83 IA~~Aa~~I~~g~~Ifld~GsT~~~la~~-L~~~-~ltVvTnsl~----------ia~~l~---~~~~~~v~l~GG 143 (251)
T PRK13509 83 IAKAASQLCNPGESVVINCGSTAFLLGRE-LCGK-PVQIITNYLP----------LANYLI---DQEHDSVIIMGG 143 (251)
T ss_pred HHHHHHHhCCCCCEEEECCcHHHHHHHHH-hCCC-CeEEEeCCHH----------HHHHHH---hCCCCEEEEECC
Confidence 445555667788888888 6666777777 5432 5677776532 223332 246777765543
No 391
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=45.14 E-value=81 Score=27.56 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccch
Q psy12573 68 LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQ 147 (315)
Q Consensus 68 l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~ 147 (315)
+.++|..+++||+.++|++.|.-+ ++-++. .. +.+.+ ....||+++.+.|...--|+.
T Consensus 188 fid~L~~fe~Dp~T~~ivmiGEiG-----G~aEe~---------AA-------~~i~~-~~~~KPVVa~iaG~tap~gkr 245 (293)
T COG0074 188 FIDALEMFEADPETEAIVMIGEIG-----GPAEEE---------AA-------EYIKA-NATRKPVVAYIAGRTAPEGKR 245 (293)
T ss_pred HHHHHHHHhcCccccEEEEEecCC-----CcHHHH---------HH-------HHHHH-hccCCCEEEEEeccCCCccch
Confidence 447778888888888888888721 111111 11 11222 224499999988876555554
Q ss_pred h
Q psy12573 148 L 148 (315)
Q Consensus 148 f 148 (315)
|
T Consensus 246 m 246 (293)
T COG0074 246 M 246 (293)
T ss_pred h
Confidence 4
No 392
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=44.31 E-value=56 Score=30.29 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=44.0
Q ss_pred CCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh
Q psy12573 79 PGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT 158 (315)
Q Consensus 79 ~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~ 158 (315)
-++.+|.|.=..++ +.|.+-.+ ......+...+..+.....|+|++|.|.+.++|..-...+|+..+.
T Consensus 220 f~lPIVtLVDTpGA-~pG~~AEe-----------~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMl 287 (431)
T PLN03230 220 FGFPILTFVDTPGA-YAGIKAEE-----------LGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMM 287 (431)
T ss_pred cCCCEEEEEeCCCc-CCCHHHHH-----------HhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEe
Confidence 56788888655543 34433221 1112234456667788899999999998744443222346888777
Q ss_pred hhcCC
Q psy12573 159 TASKF 163 (315)
Q Consensus 159 ~~~~~ 163 (315)
+.+.+
T Consensus 288 e~A~y 292 (431)
T PLN03230 288 ENAVY 292 (431)
T ss_pred cCCEE
Confidence 66443
No 393
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=42.88 E-value=59 Score=30.43 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHhhhcCCCCeEEEE-EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q psy12573 61 GVGLGFALAAALYCNHYAPGKRVVCV-QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAII 137 (315)
Q Consensus 61 g~~~~~~l~~~l~~~~~d~~~~vvvl-~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 137 (315)
|-+-+.++..+|..++... ..|||| +|.|+ --||..|-. ..+...+..++.|+|.+|
T Consensus 174 G~~A~~~i~~al~~~~~~~-~Dviii~RGGGS----~eDL~~Fn~---------------e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 174 GEGAAASIVAAIERANARG-EDVLIVARGGGS----LEDLWAFND---------------EAVARAIAASRIPVISAV 231 (438)
T ss_pred CccHHHHHHHHHHHhcCCC-CCEEEEecCCCC----HHHhhccCc---------------HHHHHHHHcCCCCEEEec
Confidence 5566799999998886633 455554 66553 234443321 245577889999999754
No 394
>PRK11778 putative inner membrane peptidase; Provisional
Probab=42.30 E-value=58 Score=29.27 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=30.3
Q ss_pred HHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCC
Q psy12573 124 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS 164 (315)
Q Consensus 124 ~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~ 164 (315)
.++.+..+|+++.+.+.+..+|-.+++.+|-.++.+.+..+
T Consensus 148 ~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vG 188 (330)
T PRK11778 148 QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVG 188 (330)
T ss_pred HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEE
Confidence 34555678999999998888888888888877766654433
No 395
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=41.83 E-value=40 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCC
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDS 90 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g 90 (315)
-.+.+.++.+..||+.++|++.-++
T Consensus 40 v~~~d~l~~~~~D~~t~~I~ly~E~ 64 (138)
T PF13607_consen 40 VDFADLLEYLAEDPDTRVIVLYLEG 64 (138)
T ss_dssp S-HHHHHHHHCT-SS--EEEEEES-
T ss_pred CCHHHHHHHHhcCCCCCEEEEEccC
Confidence 3566777777889999999998775
No 396
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=40.73 E-value=57 Score=32.50 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=45.9
Q ss_pred CCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh
Q psy12573 79 PGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT 158 (315)
Q Consensus 79 ~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~ 158 (315)
-.+++|.|.=..+++. |.+-... .....+...+..+.....|+|++|.|.+.|+|..-.+.+|+.++.
T Consensus 241 fgLPIVtLVDTpGA~p-G~~AEe~-----------Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMl 308 (762)
T PLN03229 241 HGFPIVTFIDTPGAYA-DLKSEEL-----------GQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLML 308 (762)
T ss_pred cCCCEEEEEECCCcCC-CchhHHH-----------hHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEe
Confidence 5677887755544333 3222111 112234456667778899999999999877765555568998877
Q ss_pred hhcCC
Q psy12573 159 TASKF 163 (315)
Q Consensus 159 ~~~~~ 163 (315)
+.+.+
T Consensus 309 e~A~~ 313 (762)
T PLN03229 309 ENAVF 313 (762)
T ss_pred cCCeE
Confidence 66443
No 397
>PLN02522 ATP citrate (pro-S)-lyase
Probab=40.62 E-value=2.5e+02 Score=27.72 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=15.0
Q ss_pred HHHHHHhhhcCCCCeEEEEEcC
Q psy12573 68 LAAALYCNHYAPGKRVVCVQGD 89 (315)
Q Consensus 68 l~~~l~~~~~d~~~~vvvl~g~ 89 (315)
+.+.|..+++||++++|++.|.
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygE 231 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGE 231 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEe
Confidence 4555666666777777777776
No 398
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=39.39 E-value=80 Score=25.82 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=24.1
Q ss_pred HHcCCCcEEEEEeeEEecccchhccccC--hhhhhhhcCC
Q psy12573 126 ILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKF 163 (315)
Q Consensus 126 ~~~~~~~~i~~v~G~~~g~G~~f~~g~D--~~~~~~~~~~ 163 (315)
+...+.++..++.|.+.+.|.-+.+++| .+.+.+.+.+
T Consensus 80 l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~i 119 (191)
T TIGR00493 80 MQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRI 119 (191)
T ss_pred HHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceE
Confidence 4445566777778999888776666555 3555555443
No 399
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=38.49 E-value=54 Score=25.81 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCCCc
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDSAF 92 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~ 92 (315)
....++|..+.+||++++|++-+-+++
T Consensus 59 ~~~~~~l~~~~~Dp~v~vIlvd~~~G~ 85 (153)
T PF00549_consen 59 STRNEALEIEAADPEVKVILVDIVGGI 85 (153)
T ss_dssp SHHHHHHHHHHTSTTESEEEEEEESSS
T ss_pred HHHHHHHHHHhcCCCccEEEEEecccc
Confidence 456777788888999999999887764
No 400
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=36.99 E-value=1e+02 Score=26.52 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=29.6
Q ss_pred HHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCC
Q psy12573 13 AAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGT 56 (315)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~ 56 (315)
++.+...+..+++..|+.| |..+..++.. |........++..+
T Consensus 80 ~IA~~Aa~lI~~g~~ifld~GTT~~~la~~-L~~~~~ltviTNsl 123 (253)
T COG1349 80 AIAKAAATLIEDGDTIFLDAGTTTLALARA-LPDDNNLTVITNSL 123 (253)
T ss_pred HHHHHHHhhCCCCCEEEECCCcHHHHHHHH-hCcCCCeEEEeCCH
Confidence 3445556667777777788 8888888887 66444477777654
No 401
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=35.87 E-value=1e+02 Score=27.57 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=13.5
Q ss_pred cCCCcEEEEEeeEEecccch
Q psy12573 128 RHPVPILAIISGVAAAAGCQ 147 (315)
Q Consensus 128 ~~~~~~i~~v~G~~~g~G~~ 147 (315)
...||+++.+.|...-.|+.
T Consensus 250 ~~~KPVVa~~aGrsap~G~r 269 (317)
T PTZ00187 250 PIKKPVVSFIAGITAPPGRR 269 (317)
T ss_pred cCCCcEEEEEecCCCCCCCc
Confidence 35799999988865433433
No 402
>PTZ00089 transketolase; Provisional
Probab=35.59 E-value=2.8e+02 Score=27.67 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=27.3
Q ss_pred CccccchHHHHHHHHHHhhhcCC----------CCeEEEEEcCCC
Q psy12573 57 FGTMGVGLGFALAAALYCNHYAP----------GKRVVCVQGDSA 91 (315)
Q Consensus 57 ~~~mg~~~~~~l~~~l~~~~~d~----------~~~vvvl~g~g~ 91 (315)
.|++|.+++.+++-+++.-.... +.+++++.|||.
T Consensus 115 tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~ 159 (661)
T PTZ00089 115 TGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGC 159 (661)
T ss_pred CcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccc
Confidence 58899999999998887543211 568999999996
No 403
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=35.56 E-value=52 Score=32.52 Aligned_cols=45 Identities=27% Similarity=0.255 Sum_probs=34.9
Q ss_pred CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573 57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102 (315)
Q Consensus 57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~ 102 (315)
-|+.|.+++.++|-++..--+..+.+|+++.|||. +..|.-.+.+
T Consensus 176 tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGe-l~eG~~wEAl 220 (641)
T PLN02234 176 TGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGA-MTAGQAYEAM 220 (641)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccch-hhhHHHHHHH
Confidence 47889999999999887755667789999999996 4456655543
No 404
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=34.90 E-value=95 Score=26.67 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=27.4
Q ss_pred HHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCC
Q psy12573 14 AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGT 56 (315)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~ 56 (315)
+.+.......++..|+.| |.....+++. |....+.+.++...
T Consensus 81 IA~~Aa~~I~~g~tIfld~GtT~~~la~~-L~~~~~ltVvTnsl 123 (256)
T PRK10434 81 IAEAAVSLIHDGDSIILDAGSTVLQMVPL-LSRFNNITVMTNSL 123 (256)
T ss_pred HHHHHHhhCCCCCEEEEcCcHHHHHHHHH-hccCCCeEEEECCH
Confidence 444555666777777778 6666777877 64434577777653
No 405
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=34.46 E-value=1.2e+02 Score=28.35 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=45.8
Q ss_pred hccCCC-cccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE-EcCCCccccchhhhHHhhhccCchhHHHHHHHHH
Q psy12573 43 LLNNLP-RHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV-QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCS 120 (315)
Q Consensus 43 l~~~~~-~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl-~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 120 (315)
+.+..| ...+--.. -.=|-+-+.++..++..++...++.++|+ +|.|+ ++.+.. .|. .
T Consensus 156 ~~rR~P~~~viv~pt-~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS-------iEDLW~--FNd----------E 215 (440)
T COG1570 156 LSRRFPSVEVIVYPT-LVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS-------IEDLWA--FND----------E 215 (440)
T ss_pred HHhhCCCCeEEEEec-cccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch-------HHHHhc--cCh----------H
Confidence 555555 34332221 23355666999999999998888877766 45442 343332 111 1
Q ss_pred HHHHHHHcCCCcEEEEE
Q psy12573 121 DLMLSILRHPVPILAII 137 (315)
Q Consensus 121 ~~~~~~~~~~~~~i~~v 137 (315)
.+...+..++.|+|.+|
T Consensus 216 ~vaRAi~~s~iPvISAV 232 (440)
T COG1570 216 IVARAIAASRIPVISAV 232 (440)
T ss_pred HHHHHHHhCCCCeEeec
Confidence 34567888999999865
No 406
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=31.60 E-value=59 Score=29.86 Aligned_cols=43 Identities=21% Similarity=0.150 Sum_probs=31.4
Q ss_pred ccccchHHHHHHHHHHhhh-------cCCCCeEEEEEcCCCccccchhhhH
Q psy12573 58 GTMGVGLGFALAAALYCNH-------YAPGKRVVCVQGDSAFGFSGMELET 101 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~-------~d~~~~vvvl~g~g~~~~aG~Dl~~ 101 (315)
+++|.+++.+++-++..-- .+.+.+++||.|||. ..-|.-.+.
T Consensus 118 GSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGE-l~EG~vwEA 167 (386)
T cd02017 118 VSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGE-MDEPESLGA 167 (386)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccc-cccHHHHHH
Confidence 8899999999888886532 335789999999996 334554443
No 407
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=31.43 E-value=1e+02 Score=25.42 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHHhhhcC-CCCeE-EEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEe
Q psy12573 61 GVGLGFALAAALYCNHYA-PGKRV-VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIIS 138 (315)
Q Consensus 61 g~~~~~~l~~~l~~~~~d-~~~~v-vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 138 (315)
.-.+...+-..|-.++.+ +...+ +-|-+-|+..++|.- .++.+...+.|+..++.
T Consensus 40 ~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~a-----------------------Iyd~m~~~~~~V~Tv~~ 96 (200)
T CHL00028 40 DDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLA-----------------------IYDTMQFVKPDVHTICL 96 (200)
T ss_pred cHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHH-----------------------HHHHHHhcCCCEEEEEE
Confidence 334447777777777643 33333 333555554444432 23345566778888889
Q ss_pred eEEecccchhccccCh--hhhhhhcC
Q psy12573 139 GVAAAAGCQLVATCDL--AIATTASK 162 (315)
Q Consensus 139 G~~~g~G~~f~~g~D~--~~~~~~~~ 162 (315)
|.+.+.+..+.+++|- |.+.++++
T Consensus 97 G~AaS~aslIl~aG~kg~R~~~p~s~ 122 (200)
T CHL00028 97 GLAASMASFILAGGEITKRLAFPHAR 122 (200)
T ss_pred EehHHHHHHHHhCCCCCCEEecCCCe
Confidence 9998887766666663 44544433
No 408
>PRK05261 putative phosphoketolase; Provisional
Probab=30.19 E-value=53 Score=33.18 Aligned_cols=30 Identities=40% Similarity=0.627 Sum_probs=26.7
Q ss_pred ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC
Q psy12573 58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 91 (315)
Q Consensus 58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~ 91 (315)
|.+|+++..+++.+++. ++..++|+.|||.
T Consensus 142 G~LG~gls~A~G~Al~~----~d~iv~~~vGDGE 171 (785)
T PRK05261 142 GELGYSLSHAYGAAFDN----PDLIVACVVGDGE 171 (785)
T ss_pred CchhhHHHHHHHHHHcC----CCCEEEEEECcCc
Confidence 78999999999999764 7889999999997
No 409
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=29.47 E-value=1.6e+02 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=26.8
Q ss_pred HHHHcCCCcEEEEEeeEEecccchhccccCh--hhhhhhc
Q psy12573 124 LSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTAS 161 (315)
Q Consensus 124 ~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~--~~~~~~~ 161 (315)
+.+...+.|+..++.|.+.+.|..+.+++|. +.+.+++
T Consensus 106 d~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna 145 (221)
T PRK14514 106 DTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHS 145 (221)
T ss_pred HHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCC
Confidence 3455567788888999999888777777775 4444443
No 410
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=28.59 E-value=2.4e+02 Score=23.16 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHHHhhhcCC-CCeE-EEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q psy12573 60 MGVGLGFALAAALYCNHYAP-GKRV-VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAII 137 (315)
Q Consensus 60 mg~~~~~~l~~~l~~~~~d~-~~~v-vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 137 (315)
+.-.....+...|..++.+. +..+ +-|-+.|+..++|.- .++.+...+.|+..++
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~a-----------------------Iyd~m~~~~~~V~t~~ 90 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLG-----------------------IFDTMQHVKPDVHTVC 90 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHH-----------------------HHHHHHhcCCCEEEEE
Confidence 34444577777777776433 3233 333555654444432 2233455667788888
Q ss_pred eeEEecccchhccccCh
Q psy12573 138 SGVAAAAGCQLVATCDL 154 (315)
Q Consensus 138 ~G~~~g~G~~f~~g~D~ 154 (315)
.|.+.+.+..+.+++|-
T Consensus 91 ~G~AaS~AslIl~aG~~ 107 (196)
T PRK12551 91 VGLAASMGAFLLCAGAK 107 (196)
T ss_pred EEEehhHHHHHHhCCCC
Confidence 89998888776666664
No 411
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=28.33 E-value=2.5e+02 Score=23.63 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHHhhhcCC-CCeE-EEEEcCCCccccch---hhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEE
Q psy12573 60 MGVGLGFALAAALYCNHYAP-GKRV-VCVQGDSAFGFSGM---ELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPIL 134 (315)
Q Consensus 60 mg~~~~~~l~~~l~~~~~d~-~~~v-vvl~g~g~~~~aG~---Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 134 (315)
.|..+...+-..|-.++.+. +..+ +-|-+.|+..++|. ++... ...++.+...+.++.
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~g-----------------laIyD~m~~ik~~V~ 111 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEA-----------------FAICDTMRYIKPPVH 111 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccH-----------------HHHHHHHHhcCCCeE
Confidence 34445577777776665533 3333 44467777666662 22111 123344555666788
Q ss_pred EEEeeEEecccchhccccCh
Q psy12573 135 AIISGVAAAAGCQLVATCDL 154 (315)
Q Consensus 135 ~~v~G~~~g~G~~f~~g~D~ 154 (315)
.+..|.+.+.+..+.+++|-
T Consensus 112 Tv~~G~AaS~AslIl~aG~k 131 (222)
T PRK12552 112 TICIGQAMGTAAMILSAGTK 131 (222)
T ss_pred EEEEeehhhHHHHHHhCCCC
Confidence 88889988888777777774
No 412
>KOG3220|consensus
Probab=26.93 E-value=77 Score=26.37 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=45.7
Q ss_pred HHHhhCCCCceEEeCC-ChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEE
Q psy12573 17 AVQVSIPDNCIIVGEG-ANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ 87 (315)
Q Consensus 17 ~~~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~ 87 (315)
.+.+.|. +.++..|| -+--..++..++.|+.+.+++.-+.-.+-++|..++...+. ..-+++|+-
T Consensus 48 ~ive~FG-~eiLl~~G~inR~~LG~~vF~~~~~r~~Ln~IthP~Ir~em~ke~~~~~l-----~G~r~ivlD 113 (225)
T KOG3220|consen 48 RIVEAFG-TEILLEDGEINRKVLGKRVFSDPKKRQALNKITHPAIRKEMFKEILKLLL-----RGYRVIVLD 113 (225)
T ss_pred HHHHHhC-ceeeccCCcccHHHHhHHHhCCHHHHHHHHhcccHHHHHHHHHHHHHHHh-----cCCeEEEEe
Confidence 4445563 44466664 23345677779999999888887777777788888888887 466787773
No 413
>PLN02790 transketolase
Probab=25.41 E-value=6.5e+02 Score=25.09 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=27.2
Q ss_pred CccccchHHHHHHHHHHhhh-----cCC-----CCeEEEEEcCCC
Q psy12573 57 FGTMGVGLGFALAAALYCNH-----YAP-----GKRVVCVQGDSA 91 (315)
Q Consensus 57 ~~~mg~~~~~~l~~~l~~~~-----~d~-----~~~vvvl~g~g~ 91 (315)
.+.+|.+++.++|-+++.-. +.+ +.+++++.|||.
T Consensus 104 tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~ 148 (654)
T PLN02790 104 TGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGC 148 (654)
T ss_pred CCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCc
Confidence 48889999999999887541 121 568999999996
No 414
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=24.32 E-value=2e+02 Score=23.77 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=45.8
Q ss_pred cccchHHHHHHHHHHhhhcCC-CCeE-EEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEE
Q psy12573 59 TMGVGLGFALAAALYCNHYAP-GKRV-VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAI 136 (315)
Q Consensus 59 ~mg~~~~~~l~~~l~~~~~d~-~~~v-vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 136 (315)
.+.-.+...+...|-.++.++ +..+ |-|-+.|+..++|.- .++.+...+.++..+
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~Gla-----------------------Iyd~m~~~~~~V~Ti 91 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLA-----------------------IYDTMRYIKAPVSTI 91 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHH-----------------------HHHHHHhcCCCEEEE
Confidence 334444466666666666533 2233 334555654444432 233455566788888
Q ss_pred EeeEEecccchhccccCh--hhhhhhc
Q psy12573 137 ISGVAAAAGCQLVATCDL--AIATTAS 161 (315)
Q Consensus 137 v~G~~~g~G~~f~~g~D~--~~~~~~~ 161 (315)
+.|.+.+.+..+.+++|- +.+.+++
T Consensus 92 ~~G~AaS~As~il~aG~kgkR~~~pna 118 (201)
T PRK14513 92 CVGIAMSMGSVLLMAGDKGKRMALPNS 118 (201)
T ss_pred EEeeehhhHHHHHhcCCCCcEEecCCe
Confidence 999998888777666674 4444443
No 415
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=23.81 E-value=1.5e+02 Score=26.67 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=25.1
Q ss_pred CccccchHHHHHHHHHHhhh----------cCCCCeEEEEEcCCC
Q psy12573 57 FGTMGVGLGFALAAALYCNH----------YAPGKRVVCVQGDSA 91 (315)
Q Consensus 57 ~~~mg~~~~~~l~~~l~~~~----------~d~~~~vvvl~g~g~ 91 (315)
.|++|.+++.+++-+++.-. ..-+.++.||.|||.
T Consensus 110 tGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGe 154 (332)
T PF00456_consen 110 TGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGE 154 (332)
T ss_dssp -SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHH
T ss_pred ccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCcc
Confidence 48999999999999987521 012468999999985
No 416
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=23.69 E-value=1.7e+02 Score=24.74 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccC-chhHHHHHHHHHHHHHHHHcCCCcEE
Q psy12573 66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEG-RPKLDEIFSTCSDLMLSILRHPVPIL 134 (315)
Q Consensus 66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i 134 (315)
...-+.|.++= .+..++++.|.+..+-.|.||-.-...... .....+++..+.+++..+.+..+..+
T Consensus 103 ~~~f~klK~iW--~~rdilIVEG~~sR~GvgnDLFdnaksI~rIicPsknAf~~~d~I~~~i~~~~~~~L 170 (225)
T PF08759_consen 103 ARYFEKLKQIW--KDRDILIVEGEKSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEILEAIKKYAKDKL 170 (225)
T ss_pred HHHHHHHHHHh--CCCcEEEEecCCeecCCCchhhhCccceEEEECCchhhHHHHHHHHHHHHHhCCCcE
Confidence 44444554443 455799999999888889998654331111 12346888899999988888776543
No 417
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=23.58 E-value=6.8e+02 Score=24.95 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=27.4
Q ss_pred CccccchHHHHHHHHHHhhhc----------CCCCeEEEEEcCCC
Q psy12573 57 FGTMGVGLGFALAAALYCNHY----------APGKRVVCVQGDSA 91 (315)
Q Consensus 57 ~~~mg~~~~~~l~~~l~~~~~----------d~~~~vvvl~g~g~ 91 (315)
.+++|.+++.+.+.++..-.. ..+.+++++.|||.
T Consensus 109 tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~ 153 (653)
T TIGR00232 109 TGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGC 153 (653)
T ss_pred CcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEcccc
Confidence 489999999999998865322 13568999999996
No 418
>PRK12754 transketolase; Reviewed
Probab=23.34 E-value=7.5e+02 Score=24.77 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=27.5
Q ss_pred CccccchHHHHHHHHHHhhhcC----------CCCeEEEEEcCCC
Q psy12573 57 FGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSA 91 (315)
Q Consensus 57 ~~~mg~~~~~~l~~~l~~~~~d----------~~~~vvvl~g~g~ 91 (315)
.+++|.+++.+++-+++.-... .+.+++|+.|||.
T Consensus 113 tG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGe 157 (663)
T PRK12754 113 TGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGC 157 (663)
T ss_pred CCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcch
Confidence 4789999999999998754322 2568999999995
No 419
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=23.03 E-value=1.9e+02 Score=27.55 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHhhC--------CCCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCC
Q psy12573 8 PLNYYAAIHAVQVSI--------PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAP 79 (315)
Q Consensus 8 ~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~ 79 (315)
--.|..++..+...+ ..-.++++-|++. ..=+|..+++...-|.||+++. .++.. .
T Consensus 232 m~e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~--------E~IDpVR~ItN~SSGkmG~alA----~aa~~----~ 295 (475)
T PRK13982 232 MAEPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTH--------EPIDPVRYIANRSSGKQGFAIA----AAAAA----A 295 (475)
T ss_pred CCCHHHHHHHHHHHHhhccccccCCCEEEEecCCcc--------ccCCcceeeCCCCchHHHHHHH----HHHHH----C
Confidence 355677777775444 3336777777632 2227888998888888885543 33333 5
Q ss_pred CCeEEEEEcCC
Q psy12573 80 GKRVVCVQGDS 90 (315)
Q Consensus 80 ~~~vvvl~g~g 90 (315)
...|.+++|..
T Consensus 296 GA~VtlI~Gp~ 306 (475)
T PRK13982 296 GAEVTLISGPV 306 (475)
T ss_pred CCcEEEEeCCc
Confidence 67899998864
No 420
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=22.76 E-value=1.9e+02 Score=18.47 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=25.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573 283 VLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314 (315)
Q Consensus 283 ~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~ 314 (315)
.+.+-+.++++.-+..+++...+....+|++.
T Consensus 19 ~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~ 50 (66)
T PF00191_consen 19 VLIEILCTRSPAQLRAIKQAYKKKYGKDLEED 50 (66)
T ss_dssp HHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHH
T ss_pred HhhhHHhhhcccccceeehhhhhhhHHHHHHH
Confidence 34667888999999999999998888888764
No 421
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=22.20 E-value=1.3e+02 Score=29.39 Aligned_cols=46 Identities=30% Similarity=0.346 Sum_probs=34.6
Q ss_pred CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573 57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103 (315)
Q Consensus 57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~ 103 (315)
.+.=+.++..+++-+.+.--+.++.+||.+.|||. .++|+-++.+-
T Consensus 114 ~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGA-lt~GmA~EALN 159 (627)
T COG1154 114 VGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGA-LTGGMAFEALN 159 (627)
T ss_pred cCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCcc-ccchHHHHHHh
Confidence 35566778888888877544557789999999995 77888776653
No 422
>KOG0523|consensus
Probab=21.93 E-value=1.3e+02 Score=29.18 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=41.4
Q ss_pred CCCcccccCCCCccccchHHHHHHHHHHhhhcCC-CCeEEEEEcCCCccccchhhhH
Q psy12573 46 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAP-GKRVVCVQGDSAFGFSGMELET 101 (315)
Q Consensus 46 ~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~-~~~vvvl~g~g~~~~aG~Dl~~ 101 (315)
|++++....-..|.+|.++..+++-++..--.+. +-+++++-|||. ...|.-.+.
T Consensus 106 p~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~-~~eG~~~EA 161 (632)
T KOG0523|consen 106 PEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGC-LTEGSVWEA 161 (632)
T ss_pred CcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCch-hccchHHHH
Confidence 5666666666669999999999999887665555 789999999985 345665443
No 423
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.41 E-value=2.2e+02 Score=25.26 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhHH-HhhcCeeeeeCC
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQL-VATCDLAIATTA 216 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l-~l~~d~~~a~~~ 216 (315)
.+.+.+..+|.|||.+| ||-.= ..+ =+.+|.+..++.
T Consensus 98 ~varai~~~~~PvisaI-GHe~D--~ti~D~vAd~ra~TPt 135 (319)
T PF02601_consen 98 EVARAIAASPIPVISAI-GHETD--FTIADFVADLRAPTPT 135 (319)
T ss_pred HHHHHHHhCCCCEEEec-CCCCC--chHHHHHHHhhCCCHH
Confidence 46678899999999877 44443 333 245777777654
No 424
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.04 E-value=7e+02 Score=23.27 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=25.0
Q ss_pred HHHHHHhcCCCcEEEEEccccchhhhH-HHhhcCeeeeeCC
Q psy12573 177 DLMLSILRHPVPILAIISGVAAAAGCQ-LVATCDLAIATTA 216 (315)
Q Consensus 177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~-l~l~~d~~~a~~~ 216 (315)
.+.+++..+|.|||++| ||-.= .. .=+.+|.+.+++.
T Consensus 215 ~v~~ai~~~~~Pvis~I-GHE~D--~tl~D~vAd~ra~TPt 252 (438)
T PRK00286 215 AVARAIAASRIPVISAV-GHETD--FTIADFVADLRAPTPT 252 (438)
T ss_pred HHHHHHHcCCCCEEEec-cCCCC--ccHHHHhhhccCCChH
Confidence 46678899999999877 44433 33 2356777777654
Done!