RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12573
(315 letters)
>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family,
BZL_OCoD_HPCL subfamily, TPP-binding module; composed of
proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA
decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase
(2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves
the acyloin linkage of benzoin producing 2 molecules of
benzaldehyde and enabling the Pseudomonas to grow on
benzoin as the sole carbon and energy source. OCoD has a
role in the detoxification of oxalate, catalyzing the
decarboxylation of oxalyl-CoA to formate. 2-HPCL is a
peroxisomal enzyme which plays a role in the
alpha-oxidation of 3-methyl-branched fatty acids,
catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA
into formyl-CoA and a 2-methyl-branched fatty aldehyde.
All these enzymes depend on Mg2+ and TPP for activity.
Length = 172
Score = 156 bits (396), Expect = 3e-47
Identities = 59/127 (46%), Positives = 75/127 (59%), Gaps = 28/127 (22%)
Query: 11 YYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAA 70
Y +H +Q ++PD+ IIV +G NTMD R +L PRHRLDAGTFGT+GVGLG+A+AA
Sbjct: 1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAA 60
Query: 71 ALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHP 130
AL P KRVV V+GD AFGFSGMELET R+
Sbjct: 61 ALAR----PDKRVVLVEGDGAFGFSGMELETAV------------------------RYN 92
Query: 131 VPILAII 137
+PI+ ++
Sbjct: 93 LPIVVVV 99
>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated.
Length = 266
Score = 155 bits (395), Expect = 7e-46
Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 1/148 (0%)
Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
+ L + CS +M +I+ P P++A + G+A AAGCQLVA+CDLA+A ++F+ PG G
Sbjct: 86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIG 145
Query: 228 IFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSA 287
+FCSTP VAL+R VP M +TG I A A GL+ RVV + + L++ L +
Sbjct: 146 LFCSTPMVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPA-DALDAAVARLAAV 204
Query: 288 ILENSRSVLTLGKQFLYQQMSLNIEEAY 315
I S + + +GK+ Y+Q + + +AY
Sbjct: 205 IAAKSPAAVRIGKEAFYRQAEMPLADAY 232
Score = 89.2 bits (222), Expect = 1e-20
Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 114 EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNI 170
+F+ CS +M +I+ P P++A + G+A AAGCQLVA+CDLA+A ++F+ PG NI
Sbjct: 88 ALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNI 144
>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 119 bits (300), Expect = 4e-30
Identities = 48/103 (46%), Positives = 74/103 (71%), Gaps = 7/103 (6%)
Query: 2 IQDESVPLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGT 59
+ ++ P+N+Y A+ A++ + +N +V EGANT+D+ R+++ PRHRLD GT+G
Sbjct: 366 LSTDTQPMNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGV 425
Query: 60 MGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
MG+G+G+A+AAA+ GK VV ++GDSAFGFSGME+ET+
Sbjct: 426 MGIGMGYAIAAAV-----ETGKPVVAIEGDSAFGFSGMEVETI 463
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase [Cellular processes, Detoxification].
Length = 554
Score = 109 bits (274), Expect = 1e-26
Identities = 49/103 (47%), Positives = 72/103 (69%), Gaps = 7/103 (6%)
Query: 2 IQDESVPLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGT 59
+ P+NY+ A+ A++ + DN +V EGANT+D+ R+++ PRHRLD GT+G
Sbjct: 359 LSASESPMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYKPRHRLDVGTWGV 418
Query: 60 MGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
MG+G+G+A+AAA+ GK VV ++GDSAFGFSGME+ET+
Sbjct: 419 MGIGMGYAIAAAV-----ETGKPVVALEGDSAFGFSGMEVETI 456
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 93.4 bits (233), Expect = 7e-23
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
+L+ ++LR P P++A ++G A G +L CD+ IA +KF P + G+
Sbjct: 84 ELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQ 143
Query: 237 -LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAI 288
L R V R + +TG ISA++A GL+ VV EEL + L +
Sbjct: 144 RLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPD-EELLAAALELARRL 195
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 93.6 bits (233), Expect = 2e-22
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 2/157 (1%)
Query: 160 ASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 219
S L+ DL+ ++ P P++A ++G A G +L CD+ IA +KF
Sbjct: 72 LSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKF 131
Query: 220 STPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
P G+ L R + G + + +TG PISA +A GL+ VV EEL
Sbjct: 132 GLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191
Query: 279 SETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
L + L K+ + + ++ EA
Sbjct: 192 ERALELARRLAA-PPLALAATKRLVRAALEADLAEAL 227
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 83.1 bits (206), Expect = 1e-17
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 3 QDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 62
+ + I ++ +PD+ I+V + PR L +G GTMG
Sbjct: 353 ELADDGIKPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGTMGF 412
Query: 63 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
GL A+ A L P ++VV + GD F +G ELET
Sbjct: 413 GLPAAIGAKLAA----PDRKVVAIAGDGGFMMNGQELETAV 449
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 76.6 bits (189), Expect = 3e-16
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 6/141 (4%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTP 233
DL + P P++A ++G A G +L CD IA +KF P + GI T
Sbjct: 81 DLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEVKLGIIPGAGGTQ 140
Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
L R + + M +TG I AQ+A GL+ +VV E+L E L + +
Sbjct: 141 --RLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPE-EQLVEEAIELAQRLADKPP 197
Query: 294 SVLTLGKQFLYQQMSLNIEEA 314
L K + + + E
Sbjct: 198 LALAALKAAMRAALEDALPEV 218
Score = 45.7 bits (109), Expect = 1e-05
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 80 GKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISG 139
G D M E LA + + +++S DL P P++A ++G
Sbjct: 51 GPGAFSAGAD----IKEMAAEPLAQQAQFSLEAQDLWSRLEDL-------PKPVIAAVNG 99
Query: 140 VAAAAGCQLVATCDLAIATTASKFSTPGYNI 170
A G +L CD IA +KF P +
Sbjct: 100 YALGGGLELALACDYRIAADNAKFGLPEVKL 130
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 75.9 bits (187), Expect = 5e-16
Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 45/244 (18%)
Query: 97 MELETLAVDKEG--------RPK---------LDEIFSTCSDLMLSILRHPVPILAIISG 139
MEL+ + ++KEG RPK L E+ D +L + + + A+I
Sbjct: 1 MELKNVILEKEGHIAVVTINRPKALNALNSETLKEL-----DTVLDDIENDDNVYAVI-- 53
Query: 140 VAAAAGCQLVATCDLA-----IATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIIS 194
+ A VA D++ KF G + L L PV +A I+
Sbjct: 54 LTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVF------RKLENLDKPV--IAAIN 105
Query: 195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPLGVVRSMT 250
G A GC+L CD+ IA+ +KF P GI TP L R V G + +
Sbjct: 106 GFALGGGCELSMACDIRIASEKAKFGQPEVGLGI---TPGFGGTQRLARIVGPGKAKELI 162
Query: 251 ITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLN 310
TG I+A++A GL+ +VV E+L E K L + I N+ + L K + + M ++
Sbjct: 163 YTGDMINAEEALRIGLVNKVVEP-EKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVD 221
Query: 311 IEEA 314
I+ A
Sbjct: 222 IDTA 225
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 75.7 bits (187), Expect = 7e-16
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 1/138 (0%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
D++ +I R P P++A + G A A G LVA CD+A+A + F R G+ +T +
Sbjct: 90 DMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY 149
Query: 237 LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVL 296
+ R + R +T A +A GL+ VV + E L+++ L +A++ NS +
Sbjct: 150 VIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPA-EALDAKVDELLAALVANSPQAV 208
Query: 297 TLGKQFLYQQMSLNIEEA 314
GK+ + I+ A
Sbjct: 209 RAGKRLVRDVAGRPIDAA 226
Score = 40.3 bits (95), Expect = 7e-04
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
D++ +I R P P++A + G A A G LVA CD+A+A + F
Sbjct: 90 DMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLS 135
>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional.
Length = 261
Score = 72.0 bits (177), Expect = 2e-14
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI-FCSTPAVALTR 239
I + P P++A++ G +L+ +CDL IA + S F+ A G+ + + + T
Sbjct: 91 MIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTN 150
Query: 240 KVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
+V+ M T PI+AQ A G++ VV EELE T + I E +
Sbjct: 151 DAGFHIVKEMFFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA 202
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 68.1 bits (167), Expect = 8e-14
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 13 AAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 72
+ A++ ++P++ I+V + N+ L R L + FG MG GL A+ AAL
Sbjct: 1 RVLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAAL 60
Query: 73 YCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
AP + VVC+ GD F +G EL T
Sbjct: 61 ----AAPDRPVVCIAGDGGFMMTGQELATAV 87
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 66.5 bits (163), Expect = 2e-13
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 32 GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 91
G + M R PR L +G GTMG GL A+ A L P + VV + GD
Sbjct: 3 GCHQMWAAR-YYRFRPPRRYLTSGGLGTMGYGLPAAIGAKLAR----PDRPVVAIAGDGG 57
Query: 92 FGFSGMELETLA 103
F + EL T
Sbjct: 58 FQMNLQELATAV 69
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 64.7 bits (158), Expect = 4e-12
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV-ALTRKVPLGVV 246
PI+A ++GVA G +L CDL +A + F+ P R G+ + L R++ L
Sbjct: 96 PIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRA 155
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ 306
M +TG ++A++ G + VV + EL + + IL S + KQ +Y+
Sbjct: 156 MGMILTGRRVTAREGLELGFVNEVVPA-GELLAAAERWADDILACSPLSIRASKQAVYRG 214
Query: 307 MSLNIEEAY 315
+ +++EEA
Sbjct: 215 LEVSLEEAI 223
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 64.5 bits (158), Expect = 4e-12
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLG 244
P P++A ++G A G L CDL A+ ++KFS P A+ G+ A L R +
Sbjct: 96 PKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRA 155
Query: 245 VVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLY 304
M + G P+SA++A GL+ RVV + EL++E + + S L K+ +
Sbjct: 156 RAAEMLLLGEPLSAEEALRIGLVNRVVPA-AELDAEADAQAAKLAAGPASALRYTKRAIN 214
Query: 305 QQMSLNIEEA 314
+EEA
Sbjct: 215 AATLTELEEA 224
Score = 44.1 bits (105), Expect = 4e-05
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELET-LAVDKEGRPKLDEIFSTCSDLML 124
ALA AL P RVV + G FS G +++ + +L + +
Sbjct: 36 ALADALEAAATDPAVRVVVLTGAGR-AFSAGGDIKDFPKAPPKPPDELAPVN----RFLR 90
Query: 125 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+I P P++A ++G A G L CDL A+ ++KFS P
Sbjct: 91 AIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLP 132
>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 64.0 bits (156), Expect = 8e-12
Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Query: 187 VPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPLGV 245
PI+ I+G A AG ++ CD+ +A+ +KF A+ GIF + L+R +
Sbjct: 100 KPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANR 159
Query: 246 VRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQ 305
R +++T +P++A+ A GL+ VV +E L+ +V AI++N++ ++ K +
Sbjct: 160 AREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREV-AEAIIKNNQGMVLRYKSVIND 218
Query: 306 QMSLNIEEA 314
+ L++ A
Sbjct: 219 GLKLDLGHA 227
Score = 32.0 bits (73), Expect = 0.33
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 131 VPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
PI+ I+G A AG ++ CD+ +A+ +KF
Sbjct: 100 KPIIGAINGFAITAGFEIALACDILVASRGAKF 132
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 60.0 bits (146), Expect = 1e-10
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV- 235
+++ +I PVP++A I+G A AG QL CDL + + F P A++GI A+
Sbjct: 77 EMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGI-----ALD 131
Query: 236 --ALTRKVPL---GVVRSMTITGIPISAQDAYNAGLITRV 270
+ R L G R+M + ++A+ A G+ R+
Sbjct: 132 NWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRI 171
Score = 41.9 bits (99), Expect = 2e-04
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 105 DKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS 164
D G D+ +++ +I PVP++A I+G A AG QL CDL + + F
Sbjct: 61 DLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQ 120
Query: 165 TP 166
P
Sbjct: 121 FP 122
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 60.9 bits (148), Expect = 2e-10
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 8 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
P+ Y + + + + I++G+G + + + P LD G FG +G G G+A
Sbjct: 360 PMRVYGELAPL---LDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYA 416
Query: 68 LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
LAA L P ++VV +QGD AFGFS M+++TL
Sbjct: 417 LAARLA----RPSRQVVLLQGDGAFGFSLMDVDTLV 448
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 57.8 bits (140), Expect = 1e-09
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Query: 179 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-L 237
++ + P +A I G G + CD+ IA S+F P AR G+ V L
Sbjct: 99 QAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNL 158
Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLT 297
V + + T A +A GL+ RV + ++LE+ + I N+ L
Sbjct: 159 VDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVT-AADDLETALADYAATIAGNAPLTLR 217
Query: 298 LGKQFLYQ 305
K+ + +
Sbjct: 218 AAKRAIAE 225
Score = 35.8 bits (83), Expect = 0.019
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 123 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
++ + P +A I G G + CD+ IA S+F P
Sbjct: 99 QAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIP 142
>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the
condensation of two molecules of pyruvate to give the
acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the
precursor of the branched chain amino acids, valine and
leucine. AHAS also catalyzes the condensation of
pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In
addition to requiring TPP and a divalent metal ion as
cofactors, AHAS requires FAD.
Length = 186
Score = 55.6 bits (135), Expect = 2e-09
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 14 AIHAVQVSIPDNCIIV-GEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 72
I + P + I+ G + M + PR L +G GTMG GL A+ A +
Sbjct: 6 VIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKK-PRSWLTSGGLGTMGFGLPAAIGAKV 64
Query: 73 YCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
P K V+C+ GD +F + EL T A
Sbjct: 65 AR----PDKTVICIDGDGSFQMNIQELATAA 91
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 56.3 bits (136), Expect = 3e-09
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPL 243
P++A ++G A AGC+L CD+ IA ++F P GI P L R V
Sbjct: 94 PLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIM---PGAGGTQRLIRSVGK 150
Query: 244 GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFL 303
+ M +TG I+AQ A AGL++ V LE ++ S I +S L KQ L
Sbjct: 151 SLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQL-ASKIARHSPLALRAAKQAL 209
Query: 304 YQQM 307
Q
Sbjct: 210 RQSQ 213
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 56.2 bits (136), Expect = 3e-09
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 183 LRH-PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKV 241
+RH PVP++A I G G +L A CDL IA ++F P R GI A L R +
Sbjct: 96 VRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLI 155
Query: 242 PLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQ 301
R + +TG I A A GL+ RVV EL++ + L +++ L K+
Sbjct: 156 GWARTRWLLLTGETIDAAQALAWGLVDRVV-PLAELDAAVERLAASLAGCGPQALRQQKR 214
Query: 302 FLYQQMSLNIEEA 314
L + + ++ A
Sbjct: 215 LLREWEDMPLDVA 227
Score = 36.9 bits (86), Expect = 0.009
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 79 PGKRVVCVQGDSAFGFSG----MELETLAVDKEGRPKLDEIFSTCSDLMLSILRH-PVPI 133
P RV+ ++G F G E+ TL E F + + +RH PVP+
Sbjct: 50 PDVRVLVLRGAGEKAFIGGADIKEMATLD------QASAEAFISRLRDLCDAVRHFPVPV 103
Query: 134 LAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+A I G G +L A CDL IA ++F P
Sbjct: 104 IARIPGWCLGGGLELAAACDLRIAAHDAQFGMP 136
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 55.7 bits (135), Expect = 5e-09
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 187 VPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP----AVALTRKVP 242
VP++A ++G A AGC L CD+ IA+ ++F+ + G+ P A L R +
Sbjct: 104 VPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGL---IPGDGGAWLLPRIIG 160
Query: 243 LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQF 302
+ M TG I A A GL++RVV + ++L + L I N L L K+
Sbjct: 161 MARAAEMAFTGDAIDAATALEWGLVSRVVPA-DQLLPAARALAERIAANPPHALRLTKRL 219
Query: 303 LY--QQMSL 309
L Q SL
Sbjct: 220 LREGQHASL 228
Score = 36.5 bits (85), Expect = 0.012
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 131 VPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
VP++A ++G A AGC L CD+ IA+ ++F
Sbjct: 104 VPVIAAVNGPAIGAGCDLACMCDIRIASETARF 136
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 55.4 bits (134), Expect = 7e-09
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA----VALTRKV 241
P++ I+G A G +L CD+ IA+ ++F+ AR GI P V L +KV
Sbjct: 94 RKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGI---LPGWGLSVRLPQKV 150
Query: 242 PLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
+G R M++TG + A DA AGL+T VV +E L ++ S I N
Sbjct: 151 GIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAAS-IAGN 199
Score = 28.4 bits (64), Expect = 4.5
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 63 GLGFALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRPKLDEIFSTCSD 121
L AL AAL VV + G D AF +G++L+ L D D + +
Sbjct: 31 ALRRALFAALAEADADDDVDVVVLTGADPAFC-AGLDLKELGGDGSAYGAQDAL----PN 85
Query: 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
+ P++ I+G A G +L CD+ IA+ ++F
Sbjct: 86 PSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARF 127
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 55.4 bits (134), Expect = 7e-09
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA---- 236
+I + P P++A ++G A GC+L D+ +A ++ F P + G+ P
Sbjct: 93 AIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLM---PGAGGTQR 149
Query: 237 LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
L R V M +TG + A +A GL++ VV + L
Sbjct: 150 LVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLP 191
Score = 34.3 bits (79), Expect = 0.055
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 125 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+I + P P++A ++G A GC+L D+ +A ++ F P
Sbjct: 93 AIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQP 134
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 55.0 bits (133), Expect = 8e-09
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVR 247
P++A ++G A GC+L CD+ IA +KF P + G+ P + ++++ V +
Sbjct: 96 PVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGV---LPGMGGSQRLTRAVGK 152
Query: 248 S----MTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQ 301
+ + +TG + A +A AGL++RVV + ++L E + I S + + K+
Sbjct: 153 AKAMDLCLTGRMMDAAEAERAGLVSRVVPA-DKLLDEALAAATTIASFSLPAVMMAKE 209
Score = 37.3 bits (87), Expect = 0.005
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 132 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
P++A ++G A GC+L CD+ IA +KF P
Sbjct: 96 PVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQP 130
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 55.6 bits (135), Expect = 1e-08
Identities = 31/57 (54%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAV 104
PRH L + T+GV L +A+AAAL PGK+VV V GD F FS MELET AV
Sbjct: 404 PRHLLFSNGMQTLGVALPWAIAAALV----RPGKKVVSVSGDGGFLFSAMELET-AV 455
>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate
synthase (ALS) subfamily, TPP-binding module; composed
of proteins similar to Klebsiella pneumoniae ALS, a
catabolic enzyme required for butanediol fermentation.
ALS catalyzes the conversion of 2 molecules of pyruvate
to acetolactate and carbon dioxide. ALS does not contain
FAD, and requires TPP and a divalent metal cation for
activity.
Length = 177
Score = 53.4 bits (129), Expect = 1e-08
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 15 IHAVQVSIPDNCI-IVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALY 73
+H ++ + D+ I ++ GA+ + + R P L + TMGV L A+ A L
Sbjct: 5 VHDLRAVMGDDDIVLLDVGAHKIWMAR-YYRTYAPNTCLISNGLATMGVALPGAIGAKLV 63
Query: 74 CNHYAPGKRVVCVQGDSAFGFSGMELET 101
P ++VV V GD F + ELET
Sbjct: 64 Y----PDRKVVAVSGDGGFMMNSQELET 87
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 54.6 bits (132), Expect = 1e-08
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
+ + P++A I G A G +L +C + AT ++K P G+ P A
Sbjct: 85 VTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLI---PGFA 141
Query: 237 LTRKVPLGVVRS----MTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
T+++P V ++ M +T PI+ +A GL+ V E L + K L I S
Sbjct: 142 GTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPE-ETLLDDAKKLAKKIAGKS 200
Query: 293 ----RSVLTL 298
R+VL L
Sbjct: 201 PATTRAVLEL 210
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 54.4 bits (131), Expect = 2e-08
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGV 245
P P++A ++G+A GC++ LAIA+ + F+ P R G+ P T+++P
Sbjct: 100 PKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGM---PPTFGGTQRLPRLA 156
Query: 246 VR----SMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLT 297
R + +TG SA+ A GL+ VV E L + + L I+ +S +
Sbjct: 157 GRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPA-ARALARRIIRHSPVAVA 211
Score = 35.1 bits (81), Expect = 0.033
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 130 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNI 170
P P++A ++G+A GC++ LAIA+ + F+ P +
Sbjct: 100 PKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRL 140
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 55.0 bits (133), Expect = 2e-08
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 28/124 (22%)
Query: 14 AIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALY 73
A+ +Q ++P++ I+ + N I S L R L G+FG G + A +
Sbjct: 391 ALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIA 450
Query: 74 CNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPI 133
C P + VV GD A+G S E +++ +RH P+
Sbjct: 451 C----PDRPVVGFAGDGAWGISMNE------------------------VMTAVRHNWPV 482
Query: 134 LAII 137
A++
Sbjct: 483 TAVV 486
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 54.7 bits (132), Expect = 2e-08
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 8 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 66
PL++Y I+AV + DN II + G + M ++ LN PR L +G GTMG GL
Sbjct: 369 PLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNR-PRQWLTSGGLGTMGFGLPA 427
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
A+ AAL P ++V+C GD + + E+ T A
Sbjct: 428 AIGAALAN----PERKVLCFSGDGSLMMNIQEMATAA 460
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 53.6 bits (129), Expect = 3e-08
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPLGVV 246
P++A + G A A G +++ D+ +A ++KF A+ +F AV L R++P V
Sbjct: 102 PLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVA 161
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
+ +TG I+A +A GLI VV + L+
Sbjct: 162 CDLLLTGRHITAAEAKEIGLIGHVVPDGQALD 193
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 53.3 bits (129), Expect = 3e-08
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRK----V 241
PVP++A + GV G Q+ D+ IA +K S A+ G+ P +A T V
Sbjct: 102 PVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGL---VPDMAGTVSLRGLV 158
Query: 242 PLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQ 301
V R +T T SA++A GL+T V ++ + L I + S + K
Sbjct: 159 RKDVARELTYTARVFSAEEALELGLVTHVS---DDPLAAALALAREIAQRSPDAIAAAK- 214
Query: 302 FLYQQMS 308
L +
Sbjct: 215 RLINRSW 221
Score = 35.2 bits (82), Expect = 0.029
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 130 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFS 164
PVP++A + GV G Q+ D+ IA +K S
Sbjct: 102 PVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLS 136
>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
Length = 327
Score = 53.6 bits (129), Expect = 3e-08
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-----CS 231
DL + I R P P++A+++G A G L CDL IA + F G + G F S
Sbjct: 152 DLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSS 211
Query: 232 TPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
+ R V R M +A +A GL+ VV +ELE ET IL N
Sbjct: 212 I----MARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPL-DELEGETVKWCREILRN 266
Query: 292 SRSVLTLGKQFL 303
S + + + K L
Sbjct: 267 SPTAIRVLKSAL 278
Score = 36.7 bits (85), Expect = 0.011
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
V + +L+ + DL + I R P P++A+++G A G L CDL IA + F
Sbjct: 140 VGPDDAGRLNVL-----DLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVF 194
Query: 164 STPG 167
G
Sbjct: 195 GQTG 198
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 54.1 bits (131), Expect = 4e-08
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP--L 243
PVP +A I+G A GC+ V D +A+ ++ P + GI P T ++P +
Sbjct: 102 PVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIM---PGFGGTVRLPRLI 158
Query: 244 GVVRSMTI--TGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAI 288
G ++ G + A+DA G + VV+ + E+ +L AI
Sbjct: 159 GADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAI 205
Score = 38.3 bits (90), Expect = 0.005
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
IF+ DL PVP +A I+G A GC+ V D +A+ ++ P
Sbjct: 94 IFNRLEDL-------PVPTVAAINGYALGGGCECVLATDYRVASPDARIGLP 138
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 53.0 bits (128), Expect = 4e-08
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAV 235
DL+ ++ P PI+A + GV A AG L DL + T ++K + R G+ A
Sbjct: 104 DLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGAC 163
Query: 236 A-LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
A L R + G + TG +SA++ G R+V EEL +E + L +
Sbjct: 164 ALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEP-EELLAEAQALARRLAAGPTF 222
Query: 295 VLTLGKQFLYQQMSLNIEEA 314
+ K L+Q+ + +EEA
Sbjct: 223 AHGMTKTMLHQEWDMGLEEA 242
Score = 39.6 bits (93), Expect = 0.001
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
DL+ ++ P PI+A + GV A AG L DL + T ++K
Sbjct: 104 DLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKT 146
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 52.8 bits (127), Expect = 6e-08
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLGVV 246
P++A ++G A G +L D + + F+ P A+ GI + V L +++P +
Sbjct: 96 PVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELES 279
M +TG + A++A G++ RVV E ++
Sbjct: 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDR 188
>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate
oxidase (POX) subfamily, TPP-binding module; composed of
proteins similar to Lactobacillus plantarum POX, which
plays a key role in controlling acetate production under
aerobic conditions. POX decarboxylates pyruvate,
producing hydrogen peroxide and the energy-storage
metabolite acetylphosphate. It requires FAD in addition
to TPP and a divalent cation as cofactors.
Length = 178
Score = 51.0 bits (123), Expect = 8e-08
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 8 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 66
P++ + PD+ I + G T+ R L +N R L +G TMG GL
Sbjct: 1 PIHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFIL-SGLLATMGNGLPG 59
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
A+AA L P ++V+ + GD F +L T
Sbjct: 60 AIAAKLAY----PDRQVIALSGDGGFAMLMGDLITAV 92
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 51.5 bits (124), Expect = 1e-07
Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLGVV 246
P++A + G A A G +L CDL +A +KF P + G+ + + L R++P +
Sbjct: 93 PLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ 306
+ +TG ++A+ A+ GL+ R+ + L++ + L I N + K+ + +
Sbjct: 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALE-LAERIAANGPLAVAASKRIVVES 211
Query: 307 MSLNIEEAY 315
+ +E +
Sbjct: 212 GDWSEDEMF 220
>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
Acetolactate synthase (EC 2.2.1.6) combines two
molecules of pyruvate to yield 2-acetolactate with the
release of CO2. This reaction may be involved in either
valine biosynthesis (biosynthetic) or conversion of
pyruvate to acetoin and possibly to 2,3-butanediol
(catabolic). The biosynthetic type, described by
TIGR00118, is also capable of forming
acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
isoleucine biosynthesis. The family described here, part
of the same larger family of thiamine
pyrophosphate-dependent enzymes (pfam00205, pfam02776)
is the catabolic form, generally found associated with
in species with acetolactate decarboxylase and usually
found in the same operon. The model may not encompass
all catabolic acetolactate synthases, but rather one
particular clade in the larger TPP-dependent enzyme
family [Energy metabolism, Fermentation].
Length = 539
Score = 52.4 bits (126), Expect = 1e-07
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
RH L + T+GV L +A+ AAL P +VV V GD F FS MELET
Sbjct: 398 ARHLLISNGMQTLGVALPWAIGAALV----RPNTKVVSVSGDGGFLFSSMELET 447
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 51.1 bits (123), Expect = 2e-07
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV---ALTRKVP 242
P P +A + G A G L CDL +A+ + FS P R GI P V A ++
Sbjct: 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI----PGVEYFAHPWELG 173
Query: 243 LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQ 301
+ + TG ++A +A+ G++ RVV +ELE+ET L I L L K+
Sbjct: 174 PRKAKELLFTGDRLTADEAHRLGMVNRVV-PRDELEAETLELARRIAAMPPFGLRLTKR 231
Score = 27.6 bits (62), Expect = 7.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 130 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
P P +A + G A G L CDL +A+ + FS P
Sbjct: 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDP 154
>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 255
Score = 50.8 bits (122), Expect = 2e-07
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF--CSTPA 234
DL + P +A + G A G VA D+ IA + FS G+ C P
Sbjct: 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLP- 145
Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277
L R++ MT+ P++AQ A++ GL+ ++++ L
Sbjct: 146 -FLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDTL 187
Score = 34.3 bits (79), Expect = 0.053
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
DL + P +A + G A G VA D+ IA + FS
Sbjct: 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLS 132
>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 50.4 bits (121), Expect = 3e-07
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 14/146 (9%)
Query: 165 TPGYNILVST---CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST 221
TPG+ L+ C ++ VP++A + G G LV D+ +A+ + F
Sbjct: 70 TPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGL 129
Query: 222 P----GARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277
P GA A L R VP ++R++ T I+A + ++ G + VV ++L
Sbjct: 130 PEVDRGALGA------ATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVV-PRDQL 182
Query: 278 ESETKVLTSAILENSRSVLTLGKQFL 303
+ + I V+ K+ L
Sbjct: 183 DEAALEVARKIAAKDTRVIRAAKEAL 208
>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid
synthetase). This model represents an enzyme,
naphthoate synthase (dihydroxynaphthoic acid
synthetase), which is involved in the fifth step of the
menaquinone biosynthesis pathway. Together with
o-succinylbenzoate-CoA ligase (menE: TIGR01923), this
enzyme takes 2-succinylbenzoate and converts it into
1,4-di-hydroxy-2-naphthoate. Included above the trusted
cutoff are two enzymes from Arabadopsis thaliana and one
from Staphylococcus aureus which are identified as
putative enoyl-CoA hydratase/isomerases. These enzymes
group with the naphthoate synthases when building a tree
and when doing BLAST searches [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 259
Score = 50.2 bits (120), Expect = 3e-07
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
D+ I P P++A+++G A G L CDL IA ++F G + G F +
Sbjct: 88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMCDLTIAAENARFGQTGPKVGSFDGGYGSS 147
Query: 237 -LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
+ R V R + A+ A + GL+ VV +LE ET IL+ S
Sbjct: 148 YMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPL-ADLEKETVRWCREILQKS 203
Score = 37.1 bits (86), Expect = 0.007
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 80 GKRVVCVQGDSAF-GFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIIS 138
G + C GD G G +D G +L+ + D+ I P P++A+++
Sbjct: 57 GDKAFCSGGDQKVRGDYGY------IDDSGVHRLNVL-----DVQRQIRTCPKPVIAMVN 105
Query: 139 GVAAAAGCQLVATCDLAIATTASKFSTPG 167
G A G L CDL IA ++F G
Sbjct: 106 GYAIGGGHVLHMMCDLTIAAENARFGQTG 134
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 49.8 bits (119), Expect = 4e-07
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV-ALTRKVPLG 244
P+P++ ++GVAA AG L CD+ +A +++F A+ G+ + +L R V G
Sbjct: 93 PLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLV--G 150
Query: 245 VVRSM--TITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
R+M + G + A+ A + GLI +VV + L E + L
Sbjct: 151 RARAMGLAMLGEKLDARTAASWGLIWQVV-DDAALMDEAQAL 191
Score = 42.5 bits (100), Expect = 1e-04
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 93 GFS-GMELETLAVDKEGRPKLDEIFSTCSDLMLSILRH-PVPILAIISGVAAAAGCQLVA 150
GF G +L G P L T + ++ LR P+P++ ++GVAA AG L
Sbjct: 54 GFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLAL 113
Query: 151 TCDLAIATTASKF 163
CD+ +A +++F
Sbjct: 114 ACDIVLAAESARF 126
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 51.0 bits (122), Expect = 4e-07
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP--L 243
PVP +A I+G+A GC+ V D IA +K P + GI P T ++P +
Sbjct: 102 PVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIM---PGFGGTVRLPRVI 158
Query: 244 GVVRSMTI--TGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILE 290
G ++ +G A+DA G + VV++++ + ++L AI
Sbjct: 159 GADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAING 207
Score = 35.6 bits (82), Expect = 0.029
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 113 DEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+ IF+ DL PVP +A I+G+A GC+ V D IA +K P
Sbjct: 92 NSIFNKLEDL-------PVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLP 138
>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 50.6 bits (121), Expect = 6e-07
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 5 ESVPLNYYAAIHAVQVSI-PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 63
+S P+N Y + +Q ++ II + + D + + P L G +G G
Sbjct: 377 DSTPINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYG 436
Query: 64 LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
LG A+ A L P V+ + GD+AFG +GM+ ET
Sbjct: 437 LGLAMGAKLA----RPDALVINLWGDAAFGMTGMDFET 470
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 49.2 bits (118), Expect = 6e-07
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-----V 235
++ + VP +A I+G G + A CDL IAT +++F P AR C + + V
Sbjct: 97 ALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLV 156
Query: 236 ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
AL + V+ M T + A++A AGL+ VV L++ L
Sbjct: 157 AL---LGAARVKDMLFTARLLEAEEALAAGLVNEVVED-AALDARADAL 201
Score = 39.6 bits (93), Expect = 0.001
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK 162
AV E R +D + ++ + VP +A I+G G + A CDL IAT +++
Sbjct: 84 AVAYERR--IDRVLG-------ALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSAR 134
Query: 163 FSTP 166
F P
Sbjct: 135 FGFP 138
>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 48.9 bits (117), Expect = 8e-07
Identities = 27/92 (29%), Positives = 44/92 (47%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
L+ +I+ P P++A I G A G LV CD+ +A S F+ AR G+ + ++
Sbjct: 92 ALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLT 151
Query: 237 LTRKVPLGVVRSMTITGIPISAQDAYNAGLIT 268
L ++ +TG A +A GL+T
Sbjct: 152 LLPRLSPRAAARYYLTGEKFGAAEAARIGLVT 183
Score = 38.1 bits (89), Expect = 0.003
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
L+ +I+ P P++A I G A G LV CD+ +A S F
Sbjct: 92 ALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTF 134
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 47.6 bits (113), Expect = 3e-06
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP----L 243
P++A I G G +V CD+ + + FS I T + +++P
Sbjct: 113 PVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAI---TADLGTLQRLPSIVGY 169
Query: 244 GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFL 303
G + +TG S +A GL++RV S E+L+ +++ I S +T K L
Sbjct: 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVL 229
Query: 304 YQQMSLNIEE 313
+ L++E+
Sbjct: 230 LRSRELSVEQ 239
>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 46.9 bits (112), Expect = 4e-06
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--- 233
D + +I P P++A + G AA AG L CDL +A +KF + G+ TP
Sbjct: 89 DWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGL---TPDGG 145
Query: 234 -AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
+ L R +P + + + G PISA+ + G++ R+ + L
Sbjct: 146 GSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALA 191
Score = 36.9 bits (86), Expect = 0.009
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRP-----KLDEIFSTCSD 121
A AL P R V + G F +G L L ++ P +D + D
Sbjct: 34 AGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGL----HD 89
Query: 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS 164
+ +I P P++A + G AA AG L CDL +A +KF
Sbjct: 90 WIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFV 132
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 47.0 bits (112), Expect = 4e-06
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 19/136 (13%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTP--------GARHGIFCSTPAVALTR 239
P++A ++G A AG LVA+CD+ +A+ + F P G +H R
Sbjct: 99 PVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKH----------AMR 148
Query: 240 KVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLG 299
+ R M +TG + A + Y G+I + EEL E + I S L
Sbjct: 149 LFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPP-EELMPEAMEIAREIASKSPLATRLA 207
Query: 300 KQFLYQQMSLNIEEAY 315
K L ++++ + Y
Sbjct: 208 KDALNTIENMSLRDGY 223
Score = 33.9 bits (78), Expect = 0.085
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 132 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNI 170
P++A ++G A AG LVA+CD+ +A+ + F P ++
Sbjct: 99 PVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDV 137
>gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family,
Xsc-like subfamily, TPP-binding module; composed of
proteins similar to Alcaligenes defragrans
sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a
key role in the degradation of taurine, catalyzing the
desulfonation of 2-sulfoacetaldehyde into sulfite and
acetyl phosphate. This enzyme requires TPP and divalent
metal ions for activity.
Length = 196
Score = 46.3 bits (110), Expect = 5e-06
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 8 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
P++ + ++ ++P++ I+ + N + S L PR + +FG G+A
Sbjct: 3 PMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGN----CGYA 58
Query: 68 LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
L A + AP + VV + GD A+G S ME+ T
Sbjct: 59 LPAIIGAKAAAPDRPVVAIAGDGAWGMSMMEIMT 92
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 46.5 bits (111), Expect = 6e-06
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Query: 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA--- 236
L I P++A ++G A G + D+ +A+TA++F R GI P A
Sbjct: 107 LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGI---VPEAASSW 163
Query: 237 -LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSV 295
L R V L +G AQ+A + GL+ V +EL + L I +N+ V
Sbjct: 164 FLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPP-DELLPAARALAREIADNTSPV 222
Query: 296 -LTLGKQFLYQQMSL 309
+ L +Q +++
Sbjct: 223 SVALTRQMMWRMAGA 237
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 46.3 bits (110), Expect = 7e-06
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP--- 242
P P++A I+G+A G +L CD IA ++ I P T+++P
Sbjct: 97 PQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAII---PGAGGTQRLPRLI 153
Query: 243 -LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
+G + + TG ISAQ+A GL+ VV + LE + + I N
Sbjct: 154 GVGRAKELIYTGRRISAQEAKEIGLVEFVVPA-HLLEEKAIEIAEKIASN 202
>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 46.1 bits (110), Expect = 9e-06
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
YN LV L P+P++A ++GVAA AG L CD+ +A ++ F + G
Sbjct: 88 YNPLVRRLRAL-------PLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIG 140
Query: 228 IFCSTPAV-ALTRKVPLGVVRSM--TITGIPISAQDAYNAGLITRVV 271
+ + L R V G+ R++ + G +SA+ A GLI RVV
Sbjct: 141 LVPDSGGTWFLPRLV--GMARALGLALLGEKLSAEQAEQWGLIWRVV 185
Score = 39.5 bits (93), Expect = 0.001
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 23/109 (21%)
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETLAVDKEGRPKLDEIFSTCSDLMLS 125
L AL G R + + G + GF G +L V G DL S
Sbjct: 35 ELREALDQVE-DDGARALLLTG-AGRGFCAGQDLADRDVTPGGAM---------PDLGES 83
Query: 126 ILRH-----------PVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
I P+P++A ++GVAA AG L CD+ +A ++ F
Sbjct: 84 IETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASF 132
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 46.1 bits (109), Expect = 9e-06
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLG 244
P P++A + G A G LV CDL IA+ ++F G + G A L R V
Sbjct: 94 PKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEK 153
Query: 245 VVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLY 304
R + +AQ+A GL+ VV +++L++E + I+E S + + + K+
Sbjct: 154 KAREIWYLCRRYTAQEALAMGLVNAVV-PHDQLDAEVQKWCDEIVEKSPTAIAIAKR--- 209
Query: 305 QQMSLNIEEAY 315
S N++ A+
Sbjct: 210 ---SFNMDTAH 217
Score = 32.2 bits (73), Expect = 0.27
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 130 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPG 167
P P++A + G A G LV CDL IA+ ++F G
Sbjct: 94 PKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVG 131
>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 45.7 bits (109), Expect = 9e-06
Identities = 44/150 (29%), Positives = 57/150 (38%), Gaps = 46/150 (30%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRK--VPL-- 243
P++A +SG A A G +L CDL +A A G+FC R+ VPL
Sbjct: 95 PVIAAVSGYAVAGGLELALWCDLRVAE-------EDAVFGVFC--------RRWGVPLID 139
Query: 244 -GVVR-----------SMTITGIPISAQDAYNAGLITRVVSSN------EELESETKVLT 285
G VR + +TG P+ A +A GL RVV EEL +E
Sbjct: 140 GGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFP 199
Query: 286 SAILENSR-SVLTLGKQFLYQQMSLNIEEA 314
L R S +Q L E A
Sbjct: 200 QTCLRADRLSA--------LEQWGLPEEAA 221
Score = 27.6 bits (62), Expect = 7.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 132 PILAIISGVAAAAGCQLVATCDLAIA 157
P++A +SG A A G +L CDL +A
Sbjct: 95 PVIAAVSGYAVAGGLELALWCDLRVA 120
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 45.6 bits (108), Expect = 1e-05
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Query: 176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV 235
++LM ++ R +P LA++ G A L++ CD+AI ++F R G+ + +
Sbjct: 91 AELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP 150
Query: 236 ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSV 295
+ + + R +T + A GL+ + ELE++ + + +L NS
Sbjct: 151 FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAA-ELEAQVEAWIANLLLNSPQA 209
Query: 296 LTLGKQFL 303
L K L
Sbjct: 210 LRASKDLL 217
Score = 38.3 bits (89), Expect = 0.003
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
++LM ++ R +P LA++ G A L++ CD+AI ++F
Sbjct: 91 AELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQF 134
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 45.3 bits (107), Expect = 1e-05
Identities = 23/99 (23%), Positives = 39/99 (39%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVAL 237
L++++L PVPIL + G G ++ A +L A +K P G+F + L
Sbjct: 81 LVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLL 140
Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276
++ + +G I + GL V E
Sbjct: 141 PERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPEN 179
Score = 31.5 bits (71), Expect = 0.41
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLS 125
AL+AAL + R V + + F F +V + + + ++ L+++
Sbjct: 31 ALSAALGEHLEDSALRAVLLDAEGPHFSFGA------SVAEHMPDQCAAMLASLHKLVIA 84
Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+L PVPIL + G G ++ A +L A +K P
Sbjct: 85 MLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQP 125
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 45.1 bits (107), Expect = 2e-05
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVAL 237
+ + P PI+ ++G AA G DL + ++ F R G+ P
Sbjct: 95 FLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGL---VPDGGS 151
Query: 238 TRKVP--LGVVRSMTIT--GIPISAQDAYNAGLITRVVSSNEELESETKV 283
T +P +G R+M ++ G + A+ A GL+ RVV E + K+
Sbjct: 152 TWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKL 201
Score = 37.0 bits (86), Expect = 0.009
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
+ + P PI+ ++G AA G DL + ++ F
Sbjct: 95 FLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYF 136
>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme
metabolism].
Length = 282
Score = 45.1 bits (107), Expect = 2e-05
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 165 TPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGA 224
P N+L DL I P P++A+++G A G L CDL IA + F G
Sbjct: 100 IPRLNVL-----DLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGP 154
Query: 225 RHGIFCSTPAVA-LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283
+ G F + L R V R + A++A + GL+ VV + +LE ET
Sbjct: 155 KVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVV-PHADLEKETVQ 213
Query: 284 LTSAILENS 292
+L S
Sbjct: 214 WAREMLAKS 222
Score = 33.5 bits (77), Expect = 0.099
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 80 GKRVVCVQGD-SAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIIS 138
G + C GD G SG VD +G P+L+ + DL I P P++A+++
Sbjct: 75 GDKAFCSGGDQKVRGDSGG-----YVDDDGIPRLNVL-----DLQRLIRTMPKPVIAMVA 124
Query: 139 GVAAAAGCQLVATCDLAIATTASKFSTPG 167
G A G L CDL IA + F G
Sbjct: 125 GYAIGGGHVLHVVCDLTIAADNAIFGQTG 153
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 44.7 bits (106), Expect = 2e-05
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS--------TPGARHGI 228
++ +I + P P++ + G A A + D IA+T +KF P A G+
Sbjct: 89 EISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDA-GGL 147
Query: 229 FCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAI 288
F T A+ L R L +TG ++A+ A G + RV S E+LE + L +
Sbjct: 148 FLLTRAIGLNRATHL------AMTGEALTAEKALEYGFVYRVAES-EKLEKTCEQLLKKL 200
Query: 289 LENS 292
S
Sbjct: 201 RRGS 204
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 44.7 bits (106), Expect = 2e-05
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 15/100 (15%)
Query: 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST--------PGARHGIFCS 231
L++ P+P +A ++G A AG L D+ IA + F PG
Sbjct: 89 LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWM-- 146
Query: 232 TPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVV 271
L R V V R+ + G+ A+ A GL V
Sbjct: 147 -----LQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA 181
Score = 35.1 bits (81), Expect = 0.032
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEG--RPKLDEIFSTCSDLML 124
L AA+ P + V G +G +L L L I+ D L
Sbjct: 34 QLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIY----DGFL 89
Query: 125 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST 165
++ P+P +A ++G A AG L D+ IA + F
Sbjct: 90 AVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDA 130
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 43.9 bits (104), Expect = 7e-05
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 44 LNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
L N PR + + GTMG G+ A+ + P + V+C+ GD++F + EL TLA
Sbjct: 420 LRNGPRRWISSAGLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMNIQELGTLA 475
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 44.1 bits (105), Expect = 7e-05
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 8 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
L A + +P+N I+V E + T G H T G +G GL A
Sbjct: 336 ALTPEAIAQVIAALLPENAIVVDE-SITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLA 394
Query: 68 LAAALYCNHYAPGKRVVCVQGD 89
AA+ C P ++V+ +QGD
Sbjct: 395 TGAAVAC----PDRKVLALQGD 412
>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 570
Score = 43.4 bits (102), Expect = 9e-05
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
PR L +G GTMG G A+ A L + V+C+ GD++F + EL+T+A
Sbjct: 412 PRTFLTSGGLGTMGFGFPAAIGAQLA----KEEELVICIAGDASFQMNIQELQTIA 463
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 42.5 bits (100), Expect = 1e-04
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
D++L++ R P++A ++G A G L D+ +A++++ F G +G+ S ++
Sbjct: 100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLS 159
Query: 237 LTRKVPLGVVRSMTI--TGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
+G R+ I TG + A++A GL++R V E+L + + + SR
Sbjct: 160 YLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-EQLLDTCYAIAARMAGFSRP 218
Query: 295 VLTLGKQFLY 304
+ L K+ L+
Sbjct: 219 GIELTKRTLW 228
Score = 32.1 bits (73), Expect = 0.28
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML 180
D++L++ R P++A ++G A G L D+ +A++++ F G N + T S+L L
Sbjct: 100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGL-TASELGL 158
Query: 181 SIL 183
S L
Sbjct: 159 SYL 161
>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated.
Length = 302
Score = 41.9 bits (99), Expect = 2e-04
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 21/106 (19%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVA-------- 236
P ++A++ G AA G L CDL +A+ H F T V
Sbjct: 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLAS---------REHARFKQTDADVGSFDGGYGS 185
Query: 237 --LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESE 280
L R+V R + G SA++A++ G + VV + ELE+E
Sbjct: 186 AYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVV-PHAELETE 230
Score = 29.6 bits (67), Expect = 1.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 130 PVPILAIISGVAAAAGCQLVATCDLAIAT 158
P ++A++ G AA G L CDL +A+
Sbjct: 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLAS 163
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 42.5 bits (100), Expect = 2e-04
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 21/137 (15%)
Query: 142 AAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML-SILRHPVPILAIISGVAAAA 200
A A Q++A C A T +S M I + PI+A ISG
Sbjct: 74 AGADIQMIAACKTAQEVT-----------QLSQEGQEMFERIEKSQKPIVAAISGSCLGG 122
Query: 201 GCQLVATCDLAIATTASK--FSTPGARHGIFCSTPAVALTRKVP----LGVVRSMTITGI 254
G +L C IAT K P G+ P T+++P + M +TG
Sbjct: 123 GLELALACHYRIATKDRKTLLGLPEVMLGLL---PGAGGTQRLPKLTGVPAALDMMLTGK 179
Query: 255 PISAQDAYNAGLITRVV 271
I A A G++ ++V
Sbjct: 180 KIRADRAKKMGIVDQLV 196
Score = 29.8 bits (67), Expect = 2.0
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK--FSTP 166
I + PI+A ISG G +L C IAT K P
Sbjct: 104 IEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLP 146
>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase.
Members of this protein family are sulfoacetaldehyde
acetyltransferase, an enzyme of taurine utilization.
Taurine, or 2-aminoethanesulfonate, can be used by
bacteria as a source of carbon, nitrogen, and sulfur
[Central intermediary metabolism, Other].
Length = 579
Score = 42.2 bits (99), Expect = 2e-04
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 28/135 (20%)
Query: 3 QDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 62
Q+E L+ + ++ ++P++ I+ + N + S L PR L +FG G
Sbjct: 375 QEEGNWLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGY 434
Query: 63 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDL 122
+ A + P + VV GD A+G S E
Sbjct: 435 AFPTIIGAKIAA----PDRPVVAYAGDGAWGMSMNE------------------------ 466
Query: 123 MLSILRHPVPILAII 137
+++ +RH +P+ A++
Sbjct: 467 IMTAVRHDIPVTAVV 481
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 41.8 bits (98), Expect = 4e-04
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 30 GEGANTMDIGRSLLLNNL------PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83
G+ T D+G+ + L PR +++G GTMG F L AAL P + V
Sbjct: 387 GDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMG----FGLPAALGVKMALPEETV 442
Query: 84 VCVQGDSAFGFSGMELET 101
VCV GD + + EL T
Sbjct: 443 VCVTGDGSIQMNIQELST 460
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 41.7 bits (99), Expect = 4e-04
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 23/111 (20%)
Query: 3 QDESVPLNYYAAIHAV-QVSIPDNCIIVGEGANTMDIGR--------SLLLNNLPRHRLD 53
D+ P+ + + +V D+ +I+ GA + R + LL+N
Sbjct: 351 DDDRFPMKPQRIVADLRKVMPDDDIVILDNGAYKIWFARNYRAYEPNTCLLDN------- 403
Query: 54 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAV 104
TMG GL A+AA L P ++V+ V GD F + ELET AV
Sbjct: 404 --ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMNSQELET-AV 447
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 39.9 bits (94), Expect = 5e-04
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 13 AAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 72
AA+ A +P++ IIV E A T + L G +G GL A+ AAL
Sbjct: 8 AALAAA---LPEDAIIVDE-AVTNGLPLRDQLPLTRPGSYFTLRGGGLGWGLPAAVGAAL 63
Query: 73 YCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
P ++VV + GD +F ++ L T A
Sbjct: 64 AN----PDRKVVAIIGDGSFMYTIQALWTAA 90
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 41.3 bits (97), Expect = 5e-04
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
PR + +G GTMG G A+ A + P V+ + GD F + EL T+A
Sbjct: 409 PRSFISSGGLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMNSQELATIA 460
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 41.3 bits (97), Expect = 5e-04
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 46 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
N P +++G GTMG GL A+ L P + V CV G+ + + EL T
Sbjct: 411 NKPNRWINSGGLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMNIQELST 462
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 41.3 bits (97), Expect = 5e-04
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDK 106
PR L +G G MG GL A+ AA P VV + GD +F + EL T+ V+
Sbjct: 416 PRRWLTSGGLGAMGFGLPAAIGAAAA----NPDAIVVDIDGDGSFIMNIQELATIHVEN 470
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 40.6 bits (95), Expect = 5e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGV 245
+P +A++ G A G +L +CDL I + F P I P T+++P V
Sbjct: 88 SIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAII---PGAGGTQRLPRLV 144
Query: 246 VRS----MTITGIPISAQDAYNAGLITRVVSSNE 275
RS + TG I A++A + GL+ V + E
Sbjct: 145 GRSRAKELIFTGRRIGAREAASMGLVNYCVPAGE 178
Score = 32.5 bits (74), Expect = 0.23
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 130 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+P +A++ G A G +L +CDL I + F P
Sbjct: 88 SIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLP 124
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 40.5 bits (95), Expect = 6e-04
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR------HGIFCSTPAVALTR 239
P++A I+G A G CD+ A +KF+T AR HGI + L R
Sbjct: 108 RKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGI-----SWILPR 162
Query: 240 KVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
V + ++ A++A GL+ RVV +E +E
Sbjct: 163 LVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELME 201
Score = 28.1 bits (63), Expect = 5.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 130 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFST 165
P++A I+G A G CD+ A +KF+T
Sbjct: 108 RKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTT 143
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 41.1 bits (96), Expect = 6e-04
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 46 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
+ PR +++G GTMG F L AA+ P VVCV GD + + EL T
Sbjct: 409 DKPRRWINSGGAGTMG----FGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELST 460
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 40.3 bits (95), Expect = 7e-04
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLGVV 246
P++A + G G L++ CD+ A+ +KFS G+ ++ L R + G +
Sbjct: 111 PVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHL 170
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ 306
R + +TG I A +A GL+ RV + L + I S + K+ L
Sbjct: 171 RELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYM 230
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 39.8 bits (93), Expect = 8e-04
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP--LGV 245
PI++ + G+A G + CDL A+ S F TP + P + P +G
Sbjct: 99 PIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLAL---VPEAGSSLLAPRLMGH 155
Query: 246 VRSMTI--TGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAI 288
R+ + G SA+ A AGLI ++V E +E+ET +
Sbjct: 156 QRAFALLALGEGFSAEAAQEAGLIWKIVDE-EAVEAETLKAAEEL 199
Score = 31.7 bits (72), Expect = 0.35
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMEL-ETLAVDKEGRPKLDEIFSTCSDLMLS 125
+A AL R G +G ++ + LA G EI D +++
Sbjct: 37 TMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEIL----DFLIA 92
Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+ PI++ + G+A G + CDL A+ S F TP
Sbjct: 93 LAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTP 133
>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA
hydrolase. Members of this protein family are
6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a
ring-hydrolyzing enzyme in the anaerobic metabolism of
aromatic enzymes by way of benzoyl-CoA, as seen in
Thauera aromatica, Geobacter metallireducens, and
Azoarcus sp. Note that Rhodopseudomonas palustris uses a
different pathway to perform a similar degradation of
benzoyl-CoA to 3-hydroxpimelyl-CoA.
Length = 360
Score = 40.3 bits (94), Expect = 0.001
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV 235
+D++ +IL P++ ++G+ G ++ D IA + F G +HG S P
Sbjct: 114 NDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHG---SAPIG 170
Query: 236 ALTRKVPL--GVVRSMTITGI---PISAQDAYNAGLITRVV 271
T +PL G ++M ++G P SA A G+I VV
Sbjct: 171 GATDFLPLMIGCEQAM-VSGTLCEPWSAHKAKRLGIIMDVV 210
>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.
Length = 273
Score = 39.9 bits (94), Expect = 0.001
Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 165 TPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGA 224
P N+L DL I P P++A+++G A G L CDL IA + F G
Sbjct: 91 VPRLNVL-----DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGP 145
Query: 225 RHGIF-CSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283
+ G F A L R V R + AQ+A + GL+ VV +LE ET
Sbjct: 146 KVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLEKETVR 204
Query: 284 LTSAILENS 292
+L+NS
Sbjct: 205 WCREMLQNS 213
Score = 30.6 bits (70), Expect = 0.98
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
VD +G P+L+ + DL I P P++A+++G A G L CDL IA + F
Sbjct: 86 VDDDGVPRLNVL-----DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIF 140
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 40.1 bits (94), Expect = 0.001
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 16/109 (14%)
Query: 1 MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRS------LLLNNLPRHRLDA 54
+ + I + D I+ T D+G+ PR + +
Sbjct: 355 KMDYTEEGIKPQQVIEELSRVTKDEAIV------TTDVGQHQMWAAQFYPFRKPRRFITS 408
Query: 55 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
G GTMG GL A+ A + P V+C+ GD +F + EL T
Sbjct: 409 GGLGTMGFGLPAAIGAKV----AKPESTVICITGDGSFQMNLQELSTAV 453
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 40.0 bits (94), Expect = 0.001
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
PR + G GT+G G AL A + P + VV + GD F F EL T
Sbjct: 392 PRTFVTCGYQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFGVQELAT 441
>gnl|CDD|238966 cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TPP) family,
IOR-alpha subfamily, TPP-binding module; composed of
proteins similar to indolepyruvate ferredoxin
oxidoreductase (IOR) alpha subunit. IOR catalyzes the
oxidative decarboxylation of arylpyruvates, such as
indolepyruvate or phenylpyruvate, which are generated
by the transamination of aromatic amino acids, to the
corresponding aryl acetyl-CoA.
Length = 178
Score = 38.8 bits (91), Expect = 0.001
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 37 DIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG 96
DIG L P + +D T MG +G A+ A + K+VV V GDS F SG
Sbjct: 32 DIGCYTLGALPPLNAID--TCTCMGASIGVAIGMA----KASEDKKVVAVIGDSTFFHSG 85
Query: 97 M 97
+
Sbjct: 86 I 86
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 39.7 bits (93), Expect = 0.001
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
PR L + GTMG GL A+ A + P + V+C+ GD++F + EL T+A
Sbjct: 420 PRKWLSSAGLGTMGYGLPAAIGAQIA----HPNELVICISGDASFQMNLQELGTIA 471
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 39.2 bits (92), Expect = 0.002
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRK 240
I VP++A + G G +L + + +A ++ F+ P + GIF V + R
Sbjct: 88 IQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRL 147
Query: 241 VPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
+ + + M +TG AQ+ GL +V + E L+
Sbjct: 148 IGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALD 185
>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 39.3 bits (92), Expect = 0.002
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 178 LMLSILRH-PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
+ML L P P++ I G A G L++ CD+AIA + ++F R G+ +T +
Sbjct: 91 MMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPY 150
Query: 237 LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVV 271
+ ++ R + ++ A++A GL++RVV
Sbjct: 151 VVARMGEANARRVFMSARLFDAEEAVRLGLLSRVV 185
Score = 30.0 bits (68), Expect = 1.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 122 LMLSILRH-PVPILAIISGVAAAAGCQLVATCDLAIATTASKFS 164
+ML L P P++ I G A G L++ CD+AIA + ++F
Sbjct: 91 MMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFG 134
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 39.8 bits (93), Expect = 0.002
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 8 PLNYYAAIHAV-QVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 66
PL Y A+ +++ D + G ++ R L + + + F TMGVG+
Sbjct: 358 PLQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWI-TSNLFATMGVGVPG 416
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCS 120
A+AA L +Y P ++V + GD AF + +L L + P ++ +FS C+
Sbjct: 417 AIAAKL---NY-PDRQVFNLAGDGAFSMTMQDL--LTQVQYHLPVINIVFSNCT 464
>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit;
Reviewed.
Length = 572
Score = 39.1 bits (91), Expect = 0.003
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 4 DESVPLNYYAAIHAVQVSIPDNCIIV-GEGANTMDIGRSLLLNNL-PRHRLDAGTFGTMG 61
+E+ L + + ++ ++P + I+ G G + M + L PR L + GTMG
Sbjct: 367 EENGKLKPWKIMKTIRQALPRDAIVTTGVGQHQMWAE--VFWEVLEPRTFLTSSGMGTMG 424
Query: 62 VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF 116
GL A+ A L P K VV + GD +F +G L T AVD E P + IF
Sbjct: 425 FGLPAAMGAKLA----RPDKVVVDLDGDGSFLMTGTNLAT-AVD-EHIPVISVIF 473
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 38.6 bits (90), Expect = 0.003
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 46 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
+ PR +++G GTMG F L AA+ P + VVCV GD + + EL T
Sbjct: 409 DKPRRWINSGGLGTMG----FGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELST 460
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 38.3 bits (90), Expect = 0.004
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
P + + + GTMG GL A+ A + P V+CV GD +F + EL T+
Sbjct: 391 PENFITSSGLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMNVQELGTIK 442
>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 38.4 bits (90), Expect = 0.004
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 25 NCIIVGEGANTMDIGRSLLLNNLPRHRLDAGT-FGTMGVGLGFALAAALYCNHYAPGKRV 83
+ I VG+ + G + PR +A T +GT+G GL A+ AAL AP + V
Sbjct: 373 DAIFVGDSTQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALG----APERPV 428
Query: 84 VCVQGDSAFGFSGMELETLAVDKEGRP 110
VC+ GD F+ EL + AV+ P
Sbjct: 429 VCLVGDGGLQFTLPELAS-AVE-ADLP 453
>gnl|CDD|132340 TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This
family consists of examples of phosphonopyruvate an
decarboxylase enzyme that produces phosphonoacetaldehyde
(Pald), the second step in the biosynthesis
phosphonate-containing compounds. Since the preceding
enzymate step, PEP phosphomutase (AepX, TIGR02320)
favors the substrate PEP energetically, the
decarboxylase is required to drive the reaction in the
direction of phosphonate production. Pald is a precursor
of natural products including antibiotics like bialaphos
and phosphonothricin in Streptomyces species,
phosphonate-modified molecules such as the
polysaccharide B of Bacteroides fragilis, the
phosphonolipids of Tetrahymena pyroformis, the
glycosylinositolphospholipids of Trypanosoma cruzi. This
gene generally occurs in prokaryotic organisms adjacent
to the gene for AepX. Most often an aminotansferase
(aepZ) is also present which leads to the production of
the most common phosphonate compound,
2-aminoethylphosphonate (AEP).
Length = 361
Score = 37.7 bits (88), Expect = 0.005
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 24/91 (26%)
Query: 12 YAAIHAVQVSIPDNCIIVGEGANTMDIGRSL------LLNNLPRHRLDAGTFGTMG---- 61
AI A+ +PDN +IV + T R L + R L T G+MG
Sbjct: 175 EEAIAAILDHLPDNTVIV---STTGKTSRELYELRDRIGQGHARDFL---TVGSMGHASQ 228
Query: 62 VGLGFALAAALYCNHYAPGKRVVCVQGDSAF 92
+ LG ALA P +RVVC+ GD A
Sbjct: 229 IALGLALAR--------PDQRVVCLDGDGAA 251
>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
Length = 248
Score = 37.5 bits (87), Expect = 0.006
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 190 LAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRS 248
++ I+GV A A + + D A+ KF T R G+ T A L + L R
Sbjct: 93 ISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLK---LTGQRF 149
Query: 249 --MTITGIPISAQDAYNAGLI 267
+ + G +A++A GL+
Sbjct: 150 YEILVLGGEFTAEEAERWGLL 170
Score = 33.2 bits (76), Expect = 0.14
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 79 PGKRVVCVQGDSAFGFS-GMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPI-LAI 136
P RVV V G F G +L E P ++ +R I ++
Sbjct: 43 PKIRVVIVTG-EGRAFCVGADL------SEFAPDFAIDLRETFYPIIREIRFSDKIYISA 95
Query: 137 ISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILR 184
I+GV A A + + D A+ KF T + +++ + + +L+
Sbjct: 96 INGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLK 143
>gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional.
Length = 518
Score = 37.5 bits (87), Expect = 0.007
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 9 LNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFAL 68
LN + PD I E A T + + + H T G++G GL A
Sbjct: 341 LNSLGVAQLIAHRTPDQAIYADE-ALTSGLFFDMSYDRARPHTHLPLTGGSIGQGLPLAA 399
Query: 69 AAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLD 113
AA+ P ++VVC QGD ++ L T+A R LD
Sbjct: 400 GAAVAA----PDRKVVCPQGDGGAAYTMQALWTMA-----RENLD 435
>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit;
Validated.
Length = 578
Score = 37.4 bits (87), Expect = 0.008
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 63 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
GLG+ + A+ PG V+C+ GD F ELET
Sbjct: 438 GLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETAR 478
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 36.9 bits (86), Expect = 0.008
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPLGVV 246
P++ + G G +L+ D+ +A ++F+ + GI + + G
Sbjct: 94 PLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNA 153
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
+TG AQ+A GL+ VV E+LE
Sbjct: 154 MRYLLTGDEFDAQEALRLGLVQEVVPPGEQLE 185
>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 587
Score = 37.1 bits (86), Expect = 0.011
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 46 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
N PR +++G GTMGVGL +A+ + P VVC+ G+ + EL T
Sbjct: 425 NEPRRWINSGGLGTMGVGLPYAMGIKM----AHPDDDVVCITGEGSIQMCIQELST 476
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 37.2 bits (87), Expect = 0.011
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 54 AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
A T G+MG GL A+AA L P + VV GD F +G EL T
Sbjct: 411 APTSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMNGQELAT 454
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 36.5 bits (85), Expect = 0.013
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 183 LRH-PVPILAIISGVAAAAG-CQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRK 240
LR P +A+++G G LVA CDLAIA ++F GI P +++
Sbjct: 100 LRWYQKPTIAMVNGWCFGGGFSPLVA-CDLAIAADEAQFGLSEINWGIP---PGGGVSKA 155
Query: 241 VP--LGVVRSM--TITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVL 296
+ +G ++ +TG + + A GL+ V +L + T+ L + +LE + VL
Sbjct: 156 MADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPL-AQLRARTRELAAKLLEKNPVVL 214
Query: 297 TLGKQ 301
K
Sbjct: 215 RAAKD 219
>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 379
Score = 36.3 bits (84), Expect = 0.018
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVR 247
+A++ G+ G L+ + T + F+TP A G + ++P +
Sbjct: 107 TQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGE 166
Query: 248 SMTITGIPISAQDAYNAGLITRVVSSN--EELE 278
+ +TG ++ ++ GL T V S ELE
Sbjct: 167 YLALTGARLNGKEMVACGLATHFVPSEKLPELE 199
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 35.7 bits (83), Expect = 0.026
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 4 DESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 63
PL+ + + P + I+V E +T R + +LP R G+F TM G
Sbjct: 354 APGEPLSVAFVLQTLAALRPADAIVVEEAPST----RPAMQEHLPMRR--QGSFYTMASG 407
Query: 64 -LGFALAAALYCNHYAPGKRVVCVQGD 89
LG+ L AA+ PG+RV+ + GD
Sbjct: 408 GLGYGLPAAVGVALAQPGRRVIGLIGD 434
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 35.5 bits (82), Expect = 0.037
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 46 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVD 105
N PR +G GTMG GL AL A L P K V+ GD + + EL T
Sbjct: 402 NYPRQLATSGGLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMNIQELMTAVEY 457
Query: 106 K 106
K
Sbjct: 458 K 458
>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 34.9 bits (81), Expect = 0.040
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 185 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPL 243
V I A I+G A G + CD+ IA ++ + P A G+ C+ L V
Sbjct: 95 RGVSI-AAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGE 153
Query: 244 GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
G + M + G + A A GL+ VV E E
Sbjct: 154 GWAKRMILCGERVDAATALRIGLVEEVVEKGEARE 188
>gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional.
Length = 597
Score = 34.9 bits (81), Expect = 0.060
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 8 PLNYYAAIHAVQVSIPDNCII---VGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGL 64
P+N + +PDN I+ G AN R L + L +GT TMG +
Sbjct: 365 PVNPQRVFWELSPRLPDNAILTADSGSCANWY--ARDLRMRRGMMASL-SGTLATMGPAV 421
Query: 65 GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGM-ELETLA 103
+A+AA H P + V+ + GD A +GM EL T+A
Sbjct: 422 PYAIAAKF--AH--PDRPVIALVGDGAMQMNGMAELITVA 457
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family,
PDC_IPDC subfamily, TPP-binding module; composed of
proteins similar to pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC, a key enzyme
in alcoholic fermentation, catalyzes the conversion of
pyruvate to acetaldehyde and CO2. It is able to utilize
other 2-oxo acids as substrates. In plants and various
plant-associated bacteria, IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway, a
tryptophan-dependent biosynthetic route to
indole-3-acetaldehyde (IAA). IPDC catalyzes the
decarboxylation of IPA to IAA. Both PDC and IPDC depend
on TPP and Mg2+ as cofactors.
Length = 183
Score = 33.7 bits (78), Expect = 0.060
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 65 GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
G+++ AAL AP +RV+ + GD +F + EL T
Sbjct: 53 GYSVPAALGAALAAPDRRVILLVGDGSFQMTVQELST 89
>gnl|CDD|239468 cd03371, TPP_PpyrDC, Thiamine pyrophosphate (TPP) family, PpyrDC
subfamily, TPP-binding module; composed of proteins
similar to phosphonopyruvate decarboxylase (PpyrDC)
proteins. PpyrDC is a homotrimeric enzyme which
functions in the biosynthesis of C-P compounds such as
bialaphos tripeptide in Streptomyces hygroscopicus.
These proteins require TPP and divalent metal cation
cofactors.
Length = 188
Score = 33.4 bits (77), Expect = 0.077
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 18/88 (20%)
Query: 12 YAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLL---NNLPRHRLDAGTFGTMG----VGL 64
AI V P +V + T R L H D T G+MG + L
Sbjct: 2 EDAIEIVLSRAPATAAVV---STTGMTSRELFELRDRPGGGHAQDFLTVGSMGHASQIAL 58
Query: 65 GFALAAALYCNHYAPGKRVVCVQGDSAF 92
G ALA P ++VVC+ GD A
Sbjct: 59 GIALAR--------PDRKVVCIDGDGAA 78
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 33.8 bits (77), Expect = 0.086
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARH-GIFCSTPAVALT 238
++I R P++A + G D+ IA+ + TP +R G + + + L
Sbjct: 106 MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT--GMWLY 163
Query: 239 RKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESE 280
R + L V+ ++TG P++ A A LI V E LE+
Sbjct: 164 R-LSLAKVKWHSLTGRPLTGVQAAEAELINEAVPF-ERLEAR 203
>gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit;
Validated.
Length = 612
Score = 34.2 bits (79), Expect = 0.099
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVD 105
PR L++G GTM G+A+ AA+ P K V + GD F + EL T A++
Sbjct: 437 PRTWLNSGGLGTM----GYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIE 490
>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional.
Length = 229
Score = 33.4 bits (77), Expect = 0.11
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA 213
L++ S L +L HP P++ +G A A G L+ + D I
Sbjct: 76 LLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIG 118
Score = 31.5 bits (72), Expect = 0.37
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA 157
S L +L HP P++ +G A A G L+ + D I
Sbjct: 81 STLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIG 118
>gnl|CDD|206520 pfam14352, DUF4402, Domain of unknown function (DUF4402). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 155 and 182 amino
acids in length.
Length = 129
Score = 31.6 bits (72), Expect = 0.18
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 18 VQVSIPDNCIIVGEGANTMDIGRSLLLNNLPR-HRLDAGTFGTMGVG 63
V V++P + G G NTM + +L LD+G T VG
Sbjct: 59 VTVTLPATITLTGSGGNTMTVTTFTGSTSLTLSTILDSGGSATFNVG 105
>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein.
Length = 239
Score = 32.8 bits (75), Expect = 0.18
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 133 ILAIISGVAAAA--GCQLVATC---------DLAIATTASKFSTPGYNILVSTCSDLMLS 181
I + + V + A G L+ T DLA A A +++V+ L+
Sbjct: 31 IRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSA-PSRLHLMVAKLRPLVAD 89
Query: 182 ILRHPVPILAIISGVAAAAGCQL 204
++ P+P +A ++G A+AAG L
Sbjct: 90 LISLPMPTIAAVTGHASAAGFIL 112
>gnl|CDD|234881 PRK00972, PRK00972, tetrahydromethanopterin S-methyltransferase
subunit E; Provisional.
Length = 292
Score = 32.6 bits (75), Expect = 0.19
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 22/91 (24%)
Query: 132 PILAIISGVAAAAGCQLV--ATCDLAIATTASKFSTPGY-NILVS--------------- 173
P+LAII G AA V T L + SKF P Y ++L S
Sbjct: 86 PVLAIIVGAGVAALVHGVYATTAYLGRIASQSKFGQPVYLDVLRSHTGPIMGHAFIATFC 145
Query: 174 --TCSDLMLSILRHP--VPILAIISGVAAAA 200
T S LM + L HP +P+LA+I G+ A
Sbjct: 146 IVTLSYLMTTALGHPFPLPLLALIWGITVGA 176
>gnl|CDD|226684 COG4231, COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha
and beta subunits [Energy production and conversion].
Length = 640
Score = 33.1 bits (76), Expect = 0.21
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 37 DIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG 96
DIG L P T MG +G A + A K++V V GDS F SG
Sbjct: 409 DIGCYTLGILPPL-NTVDTTTM-MGSSIGIAGGLSF-----ASTKKIVAVIGDSTFFHSG 461
Query: 97 M 97
+
Sbjct: 462 I 462
>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional.
Length = 302
Score = 32.3 bits (74), Expect = 0.24
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 9/131 (6%)
Query: 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVAL-T 238
+S+ P +A + G A G + CD IA +K P R PA +
Sbjct: 121 MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTR---VWGVPATGMWA 177
Query: 239 RKVPLGVVRS--MTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVL 296
+ LG R+ + TG I+ A GL V EEL+ T+ L I + L
Sbjct: 178 YR--LGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPP-EELDERTERLVERIAAVPVNQL 234
Query: 297 TLGKQFLYQQM 307
+ K + +
Sbjct: 235 AMVKLAVNSAL 245
>gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 67K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
contain an amino-terminal domain in addition to the
carboxyl-terminal protease domain that is conserved in
all the S49 family members (sometimes referred to as 67K
type), similar to E. coli and Arabidopsis thaliana SppA
peptidases. Unlike the eukaryotic functional homologs
that are proposed to be aspartic proteases,
site-directed mutagenesis and sequence analysis have
shown that members in this subfamily, mostly bacterial,
are serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad (both residues
absolutely conserved within bacteria, chloroplast and
mitochondrial signal peptidase family members) and not
the usual Ser-His-Asp catalytic triad found in the
majority of serine proteases. Interestingly, the single
membrane spanning E. coli SppA carries out catalysis
using a Ser-Lys dyad with the serine located in the
conserved carboxy-terminal protease domain and the
lysine in the non-conserved amino-terminal domain.
Length = 222
Score = 32.1 bits (74), Expect = 0.27
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275
VA +R + + ++ G SA++A AGL+ + +E
Sbjct: 175 DVAASRGLSPDALEALIDLG-GDSAEEALEAGLVDGLAYRDE 215
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 32.4 bits (74), Expect = 0.28
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 30 GEGANTMDIGRSLL-------LNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR 82
GE T D+G+ + P + +G GTMG GL A+ A L P +
Sbjct: 390 GEAIVTTDVGQHQMWAAQYYPFKT-PDKWVTSGGLGTMGFGLPAAIGAQLA----KPDET 444
Query: 83 VVCVQGDSAFGFSGMELETLAVDKE 107
VV + GD F M L+ L+V KE
Sbjct: 445 VVAIVGDGGF---QMTLQELSVIKE 466
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 32.4 bits (74), Expect = 0.30
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
PR + +G GTMG G A+ A + P K V+ + GD +F + EL T
Sbjct: 404 PRTFITSGGLGTMGYGFPAAIGAKV----GKPDKTVIDIAGDGSFQMNSQELATA 454
>gnl|CDD|171497 PRK12436, PRK12436, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 305
Score = 31.9 bits (72), Expect = 0.38
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 15 IHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYC 74
IH V++ I+ GA +D+ R L +NL G G++G ALY
Sbjct: 87 IHITGVTVTGTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGSVG--------GALYM 138
Query: 75 NHYAPGKRVVCVQGDSAFGFSGMELETLAVD 105
N A G + V ++ EL TL +
Sbjct: 139 NAGAYGGEISFVLTEAVVMTGDGELRTLTKE 169
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 31.7 bits (72), Expect = 0.46
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 49 RHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
R + +G GTMG G+ A+ A + P K V+ GD F + EL L
Sbjct: 409 RQLVTSGGLGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQMTNQELAIL 458
>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional.
Length = 268
Score = 31.1 bits (71), Expect = 0.54
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 79 PGKRVVCVQGDSAFGFSG---MEL-ETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPIL 134
P RVV ++G+ FS + L E +A D E R + ++ DL+ +++ PI+
Sbjct: 55 PDVRVVLIRGEGK-AFSAGGDLALVEEMADDFEVRAR---VWREARDLVYNVINCDKPIV 110
Query: 135 AIISGVAAAAGCQLVATCDLAIATTASKFS 164
+ I G A AG D++IA ++
Sbjct: 111 SAIHGPAVGAGLVAALLADISIAAKDARII 140
>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function
prediction only].
Length = 592
Score = 31.8 bits (72), Expect = 0.58
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 39 GRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 98
L PRH ++ G G LG+ + AAL P + VV + GD F F
Sbjct: 400 AAQFLHVFKPRHWINCGQAGP----LGWTIPAALGVCAADPKRNVVAISGDYDFQFL--- 452
Query: 99 LETLAV 104
+E LAV
Sbjct: 453 IEELAV 458
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 31.3 bits (71), Expect = 0.61
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRP 110
G+MG+G+ ++ A+ + ++V+ GD F + MEL T K P
Sbjct: 396 GSMGIGVPGSVGASFAVEN---KRQVISFVGDGGFTMTMMELIT--AKKYDLP 443
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 31.3 bits (71), Expect = 0.75
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK--FSTPGARHGIFCSTPAV 235
L + P+P++A I G G +L C + + K P + G+ P
Sbjct: 88 LFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLL---PGS 144
Query: 236 ALTRKVP--LGVVRS--MTITGIPISAQDAYNAGLITRVV 271
T+++P +GV + M +TG + A+ A GL+ VV
Sbjct: 145 GGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVV 184
>gnl|CDD|238964 cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) family, Gcl
subfamily, TPP-binding module; composed of proteins
similar to Escherichia coli glyoxylate carboligase
(Gcl). E. coli glyoxylate carboligase, plays a key role
in glyoxylate metabolism where it catalyzes the
condensation of two molecules of glyoxylate to give
tartronic semialdehyde and carbon dioxide. This enzyme
requires TPP, magnesium ion and FAD as cofactors.
Length = 202
Score = 30.7 bits (69), Expect = 0.78
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKE 107
PRH ++ G G LG+ + AAL P ++VV + GD F F +E LAV +
Sbjct: 47 PRHWINCGQAGP----LGWTVPAALGVAAADPDRQVVALSGDYDFQFM---IEELAVGAQ 99
Query: 108 GR 109
R
Sbjct: 100 HR 101
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 31.1 bits (71), Expect = 0.79
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 16/97 (16%)
Query: 3 QDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLL-----LNNLPRHR-LDAGT 56
+ S P+ + A+Q D+ ++ ++D+G + LN + + +
Sbjct: 353 NNASTPIKPERVMAAIQKIADDDAVL------SVDVGTVTVWSARYLNLGTNQKFIISSW 406
Query: 57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG 93
GTMG GL A+AA + P ++ + + GD F
Sbjct: 407 LGTMGCGLPGAIAAKI----AFPDRQAIAICGDGGFS 439
>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 401
Score = 30.8 bits (69), Expect = 0.87
Identities = 22/88 (25%), Positives = 37/88 (42%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVR 247
P +AI++GV G + +AT + F+TP G A +P +
Sbjct: 135 PHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGE 194
Query: 248 SMTITGIPISAQDAYNAGLITRVVSSNE 275
+ +TG+ +S + GL T + S E
Sbjct: 195 YLGLTGLKLSGAEMLACGLATHYIRSEE 222
>gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase. Glyoxylate
carboligase, also called tartronate-semialdehyde
synthase, releases CO2 while synthesizing a single
molecule of tartronate semialdehyde from two molecules
of glyoxylate. It is a thiamine pyrophosphate-dependent
enzyme, closely related in sequence to the large subunit
of acetolactate synthase. In the D-glycerate pathway,
part of allantoin degradation in the Enterobacteriaceae,
tartronate semialdehyde is converted to D-glycerate and
then 3-phosphoglycerate, a product of glycolysis and
entry point in the general metabolism.
Length = 588
Score = 29.9 bits (67), Expect = 2.0
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAV 104
PRH ++ G G LG+ + AAL P + VV + GD F F +E LAV
Sbjct: 408 PRHWINCGQAGP----LGWTIPAALGVCAADPKRNVVALSGDYDFQFM---IEELAV 457
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 29.2 bits (66), Expect = 2.2
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 93 GFS-GMELET-LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVA 150
GFS G +++ L+ + E K D + +T S++++++ P ++ I G AA G +
Sbjct: 61 GFSAGGDIKMMLSSNDES--KFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIAL 118
Query: 151 TCDLAIATTASK 162
T D IA ++K
Sbjct: 119 TADYVIADISAK 130
>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle.
Length = 265
Score = 29.0 bits (66), Expect = 2.8
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 62 VGLGFALAAALYCNHYAPGKRVVCVQ--GDSAFGFSGMELETL 102
V +G A Y +V+ + GD+AF G+ ETL
Sbjct: 121 VVMGKTRAKQDYRGDG-ERDKVLPILIHGDAAFAGQGVVYETL 162
>gnl|CDD|188611 TIGR04096, dnd_rel_methyl, DNA phosphorothioation-associated
putative methyltransferase. Members of this protein
family show distant local sequence similarity to a
number of S-adenosyl-methionine-dependent
methyltransferases. The family is identified by Partial
Phylogenetic Profiling as closely tied to the DNA
phosphorothioation system (dnd), and members are found
adjacent to dnd genes in at least 13 species
(Streptomyces lividans TK24, Shewanella frigidimarina
NCIMB 400, Mycobacterium abscessus ATCC 19977, Nostoc
punctiforme PCC 73102, Vibrio fischeri MJ11, etc.). The
DNA phosphorothioation enables a novel form of
restriction enzyme activity. Most members of this family
appear in species with the DNA phosphorothioation system
[DNA metabolism, Restriction/modification].
Length = 478
Score = 29.2 bits (66), Expect = 2.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITR 269
A LT+KV L V M I IS Y G+ITR
Sbjct: 95 AWELTQKV-LIVSAQMLIDDRDISGFTPYGDGVITR 129
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 29.2 bits (66), Expect = 3.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 47 LPRHRLDAGTFGTM-----GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS 95
+PR G+ GLG+AL AAL P + V+ GD +F F
Sbjct: 411 VPRQ-ARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFG 463
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 29.2 bits (66), Expect = 3.2
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
G +G GL A+ AAL PG++ V + GD + EL T
Sbjct: 405 GGIGQGLAMAIGAALA----GPGRKTVGLVGDGGLMLNLGELATAV 446
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 29.1 bits (66), Expect = 3.5
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK--FSTPGARHGIFCSTPAV 235
L I P+P++A I G G +L C + T K P + G+ P
Sbjct: 93 LFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLL---PGS 149
Query: 236 ALTRKVP--LGVVRS--MTITGIPISAQDAYNAGLITRVV 271
T+++P +GV + M +TG + A+ A GL+ VV
Sbjct: 150 GGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVV 189
>gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 595
Score = 28.9 bits (65), Expect = 3.7
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
P + +G GTMG GL AL + H P V+ + GD++ E+ T
Sbjct: 420 PNRWMTSGGLGTMGYGLPAALGVQI--AH--PDALVIDIAGDASIQMCIQEMST 469
>gnl|CDD|226545 COG4059, MtrE, Tetrahydromethanopterin S-methyltransferase, subunit
E [Coenzyme metabolism].
Length = 304
Score = 28.7 bits (64), Expect = 4.6
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 22/91 (24%)
Query: 132 PILAIISGVAAAAGCQLV--ATCDLAIATTASKFSTP--------------GYNILVSTC 175
P+ A+ G AA T + + S+F P G+ + + C
Sbjct: 86 PLFALALGAGIAACVHGTFAVTSHMGRIASQSRFGQPVYLDMVRSHLGPIAGHGFIATFC 145
Query: 176 ----SDLMLSILRH--PVPILAIISGVAAAA 200
S LM +L H P+P+LA I G+ A
Sbjct: 146 IVVLSYLMTVVLGHPFPLPLLAFIWGITVGA 176
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 28.6 bits (64), Expect = 4.8
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 102 LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILA--IISGVAAAAGCQLVATCD 153
+ +E R LD+I+ S L H +P +I +AA G L+
Sbjct: 555 HVLSEESRTSLDDIYDKLLQCWESNLPHDLPGTKEKLIRKIAAEIGLSLIKVSK 608
>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase;
Provisional.
Length = 278
Score = 28.3 bits (63), Expect = 5.1
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 160 ASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 219
A K S Y T + ++ +LR + + I G A GC + CD + TT
Sbjct: 81 APKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTM 140
Query: 220 STPGARHGIFCSTP----AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275
GI P + + R + V S+ + G + +A GLI VV +
Sbjct: 141 GLNEVALGI--PVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAA 198
Query: 276 ELESETKVLTSAI 288
+E+ + A+
Sbjct: 199 LMEAAASAMERAL 211
>gnl|CDD|131388 TIGR02335, hydr_PhnA, phosphonoacetate hydrolase. This family
consists of examples of phosphonoacetate hydrolase, an
enzyme specific for the cleavage of the C-P bond in
phosphonoacetate. Phosphonates are organic compounds
with a direct C-P bond that is far less labile that the
C-O-P bonds of phosphate attachment sites. Phosphonates
may be degraded for phosphorus and energy by broad
spectrum C-P lyase encoded by large operon or by
specific enzymes for some of the more common
phosphonates in nature. This family represents an enzyme
from the latter category. It may be found encoded near
genes for phosphonate transport and for pther specific
phosphonatases.
Length = 408
Score = 28.3 bits (63), Expect = 5.3
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF 229
LR PV I A++ A AG + V L + +F P R G F
Sbjct: 293 LRDPVDIRAMMDFAAGIAGVEAV----LTRSQACQRFELPEDREGDF 335
>gnl|CDD|237697 PRK14379, PRK14379, hypothetical protein; Provisional.
Length = 95
Score = 26.7 bits (59), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 116 FSTCSDLMLSILRHPVPILAIISGVAAAAGC 146
+ TCS M+ L+ PIL +I G+A C
Sbjct: 27 YPTCSSYMIDALKKHGPILGLIMGLARILRC 57
>gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate
decarboxylase, Azospirillum family. A family of closely
related, thiamine pyrophosphate-dependent enzymes
includes indolepyruvate decarboxylase (EC 4.1.1.74),
phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate
decarboxylase (EC 4.1.1.1), branched-chain
alpha-ketoacid decarboxylase, etc.. Members of this
group of homologs may overlap in specificity. This model
represents a clade that includes a Azospirillum
brasilense member active as both phenylpyruvate
decarboxylase and indolepyruvate decarboxylase.
Length = 535
Score = 28.3 bits (63), Expect = 5.7
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 55 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDE 114
G + MG G+ + A GKR++ + GD AF +G EL R +D
Sbjct: 400 GYYAGMGFGVPAGIGAQC-----TSGKRILTLVGDGAFQMTGWELGNCR-----RLGIDP 449
Query: 115 I---FSTCSDLMLSILR 128
I F+ S ML + +
Sbjct: 450 IVILFNNASWEMLRVFQ 466
>gnl|CDD|240437 PTZ00487, PTZ00487, ceramidase; Provisional.
Length = 715
Score = 28.4 bits (63), Expect = 6.3
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF 116
G+ F A + +PG R V V DS F +++ + PKL EIF
Sbjct: 65 DQRTKGIHFRQRARAFVFADSPGNRAVYVSTDSCMIFQEVKIGVV-------PKLQEIF 116
>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28. These
serine proteases include several eukaryotic enzymes such
as lysosomal Pro-X carboxypeptidase,
dipeptidyl-peptidase II, and thymus-specific serine
peptidase.
Length = 433
Score = 28.1 bits (63), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 93 GFSGMELETLAVDKEGRPKLDEIFSTCSDL 122
GF+ E+E L + KEGR L ++ C L
Sbjct: 179 GFA--EVEELLLTKEGRQALSKLLQLCPPL 206
>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase; Provisional.
Length = 958
Score = 27.7 bits (62), Expect = 9.3
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 70 AALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRH 129
AL A R+VCV FG G DK RP++ I + +D ++ +
Sbjct: 373 TALRPVAQARNGRLVCV-----FGCGGDR------DKGKRPEMGRIAAELADRVVVTSDN 421
Query: 130 P---VP---ILAIISGVAAAAGCQLVATCDLAIATT 159
P P I I++G+ A A +++ AI
Sbjct: 422 PRSEAPEAIIDQILAGIPAGARVFVISDRAEAIRQA 457
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.387
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,810,786
Number of extensions: 1539492
Number of successful extensions: 2110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1993
Number of HSP's successfully gapped: 235
Length of query: 315
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 218
Effective length of database: 6,635,264
Effective search space: 1446487552
Effective search space used: 1446487552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)