RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12573
(315 letters)
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 167 bits (426), Expect = 2e-50
Identities = 70/148 (47%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
+ + TCS +M+ I HPVP++A+++G+A AAGCQLVA+CD+A+A+ S F+TPG G
Sbjct: 108 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVG 167
Query: 228 IFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSA 287
+FCSTP VAL R VP V M TG PISAQ+A GL+++VV EL+ ET +
Sbjct: 168 LFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPE-AELQEETMRIARK 226
Query: 288 ILENSRSVLTLGKQFLYQQMSLNIEEAY 315
I SR V++LGK Y+Q+ ++ AY
Sbjct: 227 IASLSRPVVSLGKATFYKQLPQDLGTAY 254
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 165 bits (420), Expect = 1e-49
Identities = 65/148 (43%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
Y L + C+D+ML+I R P P++A + G+A AAGCQLVA CDLA+AT ++F+ G G
Sbjct: 101 YEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVG 160
Query: 228 IFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSA 287
+FCSTP VAL+R V M +TG +SA DA GL+ RVV+ + L+ E + + S
Sbjct: 161 LFCSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAP-KALDDEIEAMVSK 219
Query: 288 ILENSRSVLTLGKQFLYQQMSLNIEEAY 315
I+ R+ + +GK Y+Q+ +IE AY
Sbjct: 220 IVAKPRAAVAMGKALFYRQIETDIESAY 247
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 162 bits (411), Expect = 2e-48
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
Query: 153 DLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAI 212
++ L CS LML + P P +A++ G+A AAG QL+A CDLA
Sbjct: 71 EIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAY 130
Query: 213 ATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVS 272
A+ A++F PG ++G FC+TPAVA++R + V M +TG A A AGLI R++
Sbjct: 131 ASPAARFCLPGVQNGGFCTTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILP 190
Query: 273 SNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
L + L A+ +++ L G + L + + L +E+AY
Sbjct: 191 E-AALATHVADLAGALAARNQAPLRRGLETLNRHLELPLEQAY 232
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 131 bits (332), Expect = 1e-36
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Query: 175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA 234
+ LM +I+ +P++A I G A G LV CD+A+A S F+ AR G+ + +
Sbjct: 97 MAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIIS 156
Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
+ L K+ +TG A+ A GLIT E+L++ L + + S
Sbjct: 157 LTLLPKLSARAAARYYLTGEKFDARRAEEIGLITMAA---EDLDAAIDQLVTDVGRGSPQ 213
Query: 295 VLTLGKQFLYQQMSLNIEEAY 315
L K + +
Sbjct: 214 GLAASKALTTAAVLERFDRDA 234
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 129 bits (328), Expect = 4e-36
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 1/162 (0%)
Query: 153 DLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAI 212
DL + + F+ +LM SI + P P +A++ G A G L A CD+AI
Sbjct: 66 DLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAI 125
Query: 213 ATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVS 272
A+T+++F + G+ + + + R + + + ++ A AY+ L+ V
Sbjct: 126 ASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVP 185
Query: 273 SNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
+ L T S I N+ + KQ + I+E
Sbjct: 186 D-DTLLEFTLKYASQISNNAPEAVKNSKQLAQYVANKKIDEE 226
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 122 bits (309), Expect = 2e-33
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 4/141 (2%)
Query: 175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA 234
DL + + P ++ + G A G V+ D+AIA + FS G++ +
Sbjct: 89 LYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACVL 148
Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
L R++ MT+ PIS Q+A GLI E + + + ++
Sbjct: 149 PFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFD---AESDVLLRKHLLRLRRLNKK 205
Query: 295 VLTLGKQFLYQQMSLNIEEAY 315
+ KQ + + A
Sbjct: 206 GIAHYKQ-FMSSLDHQVSRAK 225
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 103 bits (258), Expect = 4e-26
Identities = 24/141 (17%), Positives = 39/141 (27%), Gaps = 3/141 (2%)
Query: 175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA 234
L+ + P LA+ G AG L A C T + F PG + G+ T
Sbjct: 87 IEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTR- 145
Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
V S+ + A +A G + + + + A +
Sbjct: 146 -RFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQ-AQWPALIDAAAEAATALDPA 203
Query: 295 VLTLGKQFLYQQMSLNIEEAY 315
+ L A
Sbjct: 204 TRATLHRVLRDDHDDADLAAL 224
Score = 53.7 bits (130), Expect = 1e-08
Identities = 14/57 (24%), Positives = 18/57 (31%)
Query: 114 EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNI 170
L+ + P LA+ G AG L A C T + F PG
Sbjct: 82 LRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKF 138
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 100 bits (251), Expect = 4e-25
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 1/142 (0%)
Query: 174 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP 233
+ L + +P P +A ++G A A G L CDL + ++ + G +
Sbjct: 82 SLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV 141
Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
+V L R V + + +TG + A++A GL+ R+ + E K L + +N+
Sbjct: 142 SVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPP-GKALEEAKALAEEVAKNAP 200
Query: 294 SVLTLGKQFLYQQMSLNIEEAY 315
+ L L K+ L + +E+ +
Sbjct: 201 TSLRLTKELLLALPGMGLEDGF 222
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 96.8 bits (241), Expect = 3e-23
Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 3/133 (2%)
Query: 175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA 234
S++ P + I G A G + D IA +K P R +
Sbjct: 146 FVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG- 204
Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
++ + + TG I+ A GL +L++ T+ L I +
Sbjct: 205 -LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAP-DPADLDARTERLVERIAAMPVN 262
Query: 295 VLTLGKQFLYQQM 307
L + K +
Sbjct: 263 QLIMAKLACNTAL 275
Score = 50.9 bits (122), Expect = 2e-07
Identities = 11/52 (21%), Positives = 17/52 (32%)
Query: 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNI 170
S++ P + I G A G + D IA +K P +
Sbjct: 146 FVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRV 197
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 92.3 bits (230), Expect = 5e-22
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
+ L P P +A + G + G L CDL IA + FS P I
Sbjct: 108 EYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHG 166
Query: 237 LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVL 296
T ++ + + TG ++A++ G++ RVV + L++ET+ L I + L
Sbjct: 167 HTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPR-DRLDAETRALAGEIAKMPPFAL 225
Query: 297 TLGKQFLYQQM 307
K+ + Q +
Sbjct: 226 RQAKRAVNQTL 236
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 94.5 bits (236), Expect = 9e-22
Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 7/102 (6%)
Query: 4 DESVPLNYYAAIHAVQVSI--PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMG 61
S +NY ++ V+ + + +V EGAN +D R ++ PR RLD+GT+G MG
Sbjct: 370 TPSGMMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMG 429
Query: 62 VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
+G+G+ +AAA GK V+ V+GDSAFGFSGMELET+
Sbjct: 430 IGMGYCVAAAA-----VTGKPVIAVEGDSAFGFSGMELETIC 466
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 93.8 bits (234), Expect = 2e-21
Identities = 45/102 (44%), Positives = 68/102 (66%), Gaps = 7/102 (6%)
Query: 4 DESVPLNYYAAIHAVQVSI--PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMG 61
++ PLNY+ A+ AV+ + + +V EGANT+D R+++ PR RLD GT+G MG
Sbjct: 365 TDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGTWGVMG 424
Query: 62 VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
+G+G+A+ A++ G VV ++GDSAFGFSGME+ET+
Sbjct: 425 IGMGYAIGASV-----TSGSPVVAIEGDSAFGFSGMEIETIC 461
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 91.4 bits (227), Expect = 3e-21
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 3/127 (2%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS-KFSTPGARHGIFCSTPAV 235
++ I P ++ +++G AA G L CDL +A+ +F A G F
Sbjct: 158 EVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGS 217
Query: 236 A-LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
A L R+V R + G +A+ + G + V ELE+ + I S
Sbjct: 218 AYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEH-AELETVGLQWAAEINAKSPQ 276
Query: 295 VLTLGKQ 301
+ K
Sbjct: 277 AQRMLKF 283
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 86.5 bits (215), Expect = 8e-20
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
+ P+L ++G+ AG V T D+ IA+ + F P G+ V
Sbjct: 101 EGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVAGRELVR 160
Query: 237 LTRKVPLGVVRSMTITG--IPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
++R +P + M + G +SAQ AY GLI+ +V + L + + N+
Sbjct: 161 VSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEH-DRLLERAHEIADIVNSNAPL 219
Query: 295 VLTLGKQFLYQQMSLNIEEAY 315
+ + + + +++ + EA
Sbjct: 220 AVRGTRLAILKGLNVPLHEAE 240
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 86.1 bits (214), Expect = 9e-20
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 7/142 (4%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
+L I P +A+I+G A G ++ CD IA +KF + GI +P +
Sbjct: 92 HCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGI---SPDLG 148
Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
L R + ++ + G ++++A GLI + + +EL+ K A+ E
Sbjct: 149 ASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGY 208
Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
+ K+ L + + +++
Sbjct: 209 VPAIAATKKLLKGKAAEELKQQ 230
Score = 47.2 bits (113), Expect = 3e-06
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK 162
+ +L E+ + +L I P +A+I+G A G ++ CD IA +K
Sbjct: 74 CASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAK 133
Query: 163 FSTP 166
F
Sbjct: 134 FLEN 137
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 85.7 bits (213), Expect = 1e-19
Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 9/143 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
++ ++ P P++A + GVAA AG L D +A +++F+ R G+ +
Sbjct: 104 QVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGL---SGGDM 160
Query: 237 -----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
L R V LG + + G + A +A GLI+ + + + L + +
Sbjct: 161 GAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEE-GRADEAARTLARRLADG 219
Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
K L ++ + + A
Sbjct: 220 PALAHAQTKALLTAELDMPLAAA 242
Score = 51.1 bits (123), Expect = 1e-07
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 67 ALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRP--KLDEIFSTCSDLM 123
L L R + + G F SG +++ + +L + ++
Sbjct: 48 DLRDLLAELSRRRAVRALVLAGEGRGFC-SGGDVDEIIGATLSMDTARLLDFNRMTGQVV 106
Query: 124 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
++ P P++A + GVAA AG L D +A +++F+
Sbjct: 107 RAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFL 149
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 84.5 bits (210), Expect = 2e-19
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 8/142 (5%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
DL IL +PI+A + G + G L D + + S ++T ++G TP A
Sbjct: 81 DLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGF---TPVGA 137
Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
L K+ + + M TG ++ G+ VVS +++ + + L I ++
Sbjct: 138 TSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSR-QDVLNYAQQLGQKIAKSP 196
Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
R L KQ L + EA
Sbjct: 197 RLSLVALKQHLSADIKAKFPEA 218
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 84.3 bits (209), Expect = 5e-19
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTP 233
+ + + ++ PI+ ++G A G ++ CDL A + F TP G CS+
Sbjct: 110 NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSS- 168
Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
+ + + M I G ++A++A GL+++V + E + + +
Sbjct: 169 -ITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLT-GTFTQEVMIQIKELASYNP 226
Query: 294 SVLTLGKQFLYQQMSLNIEEA 314
VL K + + L +E+A
Sbjct: 227 IVLEECKALVRCNIKLELEQA 247
Score = 46.1 bits (110), Expect = 5e-06
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+ + + ++ PI+ ++G A G ++ CDL A + F TP
Sbjct: 110 NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTP 155
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 83.4 bits (207), Expect = 6e-19
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTP 233
+ + + ++ PI+ ++G A G ++ CD+ A + F TP G CST
Sbjct: 92 NFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCST- 150
Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
V + + M ++G ++AQ+A GL+++V E V + +
Sbjct: 151 -VMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWP-GTFTQEVMVRIKELASCNP 208
Query: 294 SVLTLGKQFLYQQMSLNIEEA 314
VL K + M + +E+A
Sbjct: 209 VVLEESKALVRCNMKMELEQA 229
Score = 45.2 bits (108), Expect = 9e-06
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+ + + ++ PI+ ++G A G ++ CD+ A + F TP
Sbjct: 92 NFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTP 137
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 83.5 bits (207), Expect = 1e-18
Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 6/141 (4%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTP 233
+ + + P P++A+++G A L+ D A+ + F TP + G CS+
Sbjct: 112 EFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSS- 170
Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
+ + M I G ++A +A GL+T V + E A +
Sbjct: 171 -YTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPD-STFQKEVWTRLKAFAKLPP 228
Query: 294 SVLTLGKQFLYQQMSLNIEEA 314
+ L + K+ + ++ +
Sbjct: 229 NALRISKEVIRKREREKLHAV 249
Score = 48.8 bits (117), Expect = 7e-07
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+ + + P P++A+++G A L+ D A+ + F TP
Sbjct: 112 EFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTP 157
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 83.0 bits (206), Expect = 1e-18
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
+++L++ R P++A I+G A G L CD+ +A+ + F G +G+ T +
Sbjct: 114 EVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGL---TASEL 170
Query: 237 -----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
L R + + +TG + A +A GL++R V+S E L E + I
Sbjct: 171 GLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVAS-ESLLEECYAIGERIAGF 229
Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
SR + L K+ ++ + E+
Sbjct: 230 SRPGIELTKRTIWSGLDAASLES 252
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 81.4 bits (202), Expect = 3e-18
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 8/154 (5%)
Query: 165 TPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGA 224
P Y + + ++ ++ P++ ++GVAA AG L DL +A + F+T
Sbjct: 70 KPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFV 129
Query: 225 RHGIFCSTP----AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESE 280
R G+ P + L R V L + + + +SA++A GL+ RVV E+L E
Sbjct: 130 RIGL---VPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVV-PAEKLMEE 185
Query: 281 TKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
L + + L K+ L + L++ EA
Sbjct: 186 ALSLAKELAQGPTRAYALTKKLLLETYRLSLTEA 219
Score = 50.2 bits (121), Expect = 2e-07
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 67 ALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLS 125
AL AAL R + + G AF +G +L + +P + + ++ +
Sbjct: 31 ALYAALKEGEEDREVRALLLTGAGRAFS-AGQDLTEFG---DRKPDYEAHLRRYNRVVEA 86
Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+ P++ ++GVAA AG L DL +A + F+T
Sbjct: 87 LSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTA 127
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 81.1 bits (201), Expect = 6e-18
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--- 233
+++L + R +P++A ++G A GC LVA D+ + + P + G+
Sbjct: 113 EIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGL---VAADG 169
Query: 234 -AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
+ + L + + +TG ISAQ A GL V ++ +E ILE
Sbjct: 170 GPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA---DDPVAEAIACAKKILELP 226
Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
+ + K+ L + + +
Sbjct: 227 QQAVESTKRVLNIHLERAVLAS 248
Score = 45.3 bits (108), Expect = 1e-05
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+++L + R +P++A ++G A GC LVA D+ + + P
Sbjct: 113 EIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADP 158
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 80.7 bits (200), Expect = 7e-18
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA- 236
+M ++ P++A ++G AA AG L CD + + + F+ G+ P
Sbjct: 86 MMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGL---VPDAGH 142
Query: 237 ---LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
L R V + + G ++A++A GL T+V+ + E E K +
Sbjct: 143 LYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVI-PLSDWEEEVKQFAERLSAMPT 201
Query: 294 SVLTLGKQFLYQQMSLNIEEA 314
+ L K+ L + +
Sbjct: 202 KAIGLIKRLLRESEETTFDRY 222
Score = 46.4 bits (111), Expect = 4e-06
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+M ++ P++A ++G AA AG L CD + + + F+
Sbjct: 86 MMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPA 130
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 80.3 bits (199), Expect = 7e-18
Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 8/142 (5%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--- 233
D+ P++ I+G A G +L CD+ IA+ +KF+ AR G+ P
Sbjct: 83 DISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLM---PTWG 139
Query: 234 -AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
+V L +KV +G+ R M++TG +SAQDA AGL+T VV+ ++L + + + ++I+ N+
Sbjct: 140 LSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAH-DDLLTAARRVAASIVGNN 198
Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
+ + ++ +L A
Sbjct: 199 QKAVRALLDSYHRIDALQTGGA 220
Score = 39.9 bits (94), Expect = 5e-04
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
D+ P++ I+G A G +L CD+ IA+ +KF+
Sbjct: 83 DISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADT 128
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 80.3 bits (199), Expect = 1e-17
Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Query: 156 IATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT 215
+A ++ + P ++ L+ ++ P P++ ++G+ G ++ DLA ++
Sbjct: 69 LAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSS 128
Query: 216 ASKFSTPGARHGIFCSTPAVA----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVV 271
++ P G+ P A L + V + ++ I A++A GL+ R+
Sbjct: 129 TARLKCPFTSLGV---APEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRIC 185
Query: 272 SSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
S EEL E + + S L K + + I A
Sbjct: 186 SP-EELLPEARRHAEILAAKPISSLMAVKHTMVEPNRAQIAAA 227
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 79.9 bits (198), Expect = 1e-17
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
++ +I P P++A + G A GC L CDL +A AS F R G+ A A
Sbjct: 83 RVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASA 142
Query: 237 -LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSV 295
L + M +T ISA A+ G+I+ + S +E ES + ++
Sbjct: 143 LLPLLIGRARTSRMAMTAEKISAATAFEWGMISHIT-SADEYESVLTDVLRSVSGGPTLA 201
Query: 296 LTLGKQFLYQQMSLNIEEA 314
K+ L +E
Sbjct: 202 FGWTKRALAAATLAELEPV 220
Score = 47.2 bits (113), Expect = 2e-06
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
++ +I P P++A + G A GC L CDL +A AS F
Sbjct: 83 RVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLA 128
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 78.8 bits (195), Expect = 2e-17
Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 3/146 (2%)
Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT-ASKFSTPGARHGIF 229
LV+ S L +L HP PI+ G A A G L+ + D I + G+
Sbjct: 79 LVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMT 138
Query: 230 CSTPAVA-LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAI 288
+ ++ I + A AG + +VVS EEL+ + + +
Sbjct: 139 MHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSV-EELQGAALAVAAQL 197
Query: 289 LENSRSVLTLGKQFLYQQMSLNIEEA 314
+ + + K + + + ++ A
Sbjct: 198 KKINMNAHKKTKLKVRKGLLDTLDAA 223
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 79.5 bits (197), Expect = 2e-17
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
DL I P P++A++ G A G L CDL IA + F G + G F A
Sbjct: 98 DLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSF---DAGY 154
Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
L R V R + +AQ+A + GL+ VV E++E ET I+++S
Sbjct: 155 GSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL-EKVEDETVQWCKEIMKHS 213
Query: 293 RSVLTLGKQ 301
+ L K
Sbjct: 214 PTALRFLKA 222
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 79.1 bits (196), Expect = 3e-17
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 8/141 (5%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--- 233
DL+L L P P++A + VA AG L D+A+ ++ R G+
Sbjct: 95 DLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGV---AAGDH 151
Query: 234 -AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
+ V + + + P++ ++A GL+ V E++ + + + +
Sbjct: 152 AVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVED-EKVYEKALEVAERLAQGP 210
Query: 293 RSVLTLGKQFLYQQMSLNIEE 313
+ L K L +
Sbjct: 211 KEALHHTKHALNHWYRSFLPH 231
Score = 50.6 bits (122), Expect = 2e-07
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Query: 67 ALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLS 125
LA G R V ++G F +G + + L +F DL+L
Sbjct: 41 GLARVWRDLEAVEGVRAVLLRGEGGVFS-AGGSFGLIEEMRASHEALLRVFWEARDLVLG 99
Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
L P P++A + VA AG L D+A+ ++
Sbjct: 100 PLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDG 140
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 78.8 bits (195), Expect = 3e-17
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
Query: 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA--- 236
S LR P++A ISG A A G +L CDL + + R G+ P +
Sbjct: 95 PSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGV----PLIDGGT 150
Query: 237 --LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
L R + + +TG P+ A +A + GL+ RVV+ + E + L + I +
Sbjct: 151 IRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQARE-AAETLAAEIAAFPQQ 209
Query: 295 VLTLGKQFLYQQMSLNIEEAY 315
+ + Q + E A
Sbjct: 210 CVRADRDSAIAQWGMAEEAAL 230
Score = 38.0 bits (89), Expect = 0.002
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 95 SGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDL 154
+G +L+ + D+ + S LR P++A ISG A A G +L CDL
Sbjct: 70 AGADLKAMGTDRGNELHPHGPGP----MGPSRLRLSKPVIAAISGHAVAGGIELALWCDL 125
Query: 155 AIATTASKFSTP 166
+ +
Sbjct: 126 RVVEEDAVLGVF 137
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 79.2 bits (196), Expect = 3e-17
Identities = 36/129 (27%), Positives = 49/129 (37%), Gaps = 8/129 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
DL I P ++A+++G A G L CDL IA + F G + G F
Sbjct: 100 DLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSF---DGGF 156
Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
L R V R + SAQ+A G++ VV + LE E IL S
Sbjct: 157 GSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPV-DRLEEEGIQWAKEILSKS 215
Query: 293 RSVLTLGKQ 301
+ K
Sbjct: 216 PLAIRCLKA 224
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 77.6 bits (192), Expect = 5e-17
Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 8/142 (5%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
+L +L +P P++ +G A A G L+ + D +A A G+ T A
Sbjct: 86 ELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGM---TIPYA 142
Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
L ++ + + A AG I + E + S + +
Sbjct: 143 AMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLP-EVVLSRAEEAAREFAGLN 201
Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
+ K + I
Sbjct: 202 QQAHNATKLRARAEALKAIRAG 223
Score = 43.0 bits (102), Expect = 4e-05
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+L +L +P P++ +G A A G L+ + D +A A
Sbjct: 86 ELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQAN 131
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 78.0 bits (193), Expect = 6e-17
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 12/143 (8%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA- 236
++ I+R P+LA I+GVAA G + D+AI ++KF GI A
Sbjct: 92 MIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGI---GNDTAT 148
Query: 237 ---LTRKVPLGVVRSM--TITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
L R V G+ R+M +T + ++A + GL++RV +E + +
Sbjct: 149 SYSLARIV--GMRRAMELMLTNRTLYPEEAKDWGLVSRVYPK-DEFREVAWKVARELAAA 205
Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
+ + K+ + +EE
Sbjct: 206 PTHLQVMAKERFHAGWMQPVEEC 228
Score = 45.6 bits (109), Expect = 7e-06
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
++ I+R P+LA I+GVAA G + D+AI ++KF
Sbjct: 92 MIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCA 136
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 78.0 bits (193), Expect = 6e-17
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 7/141 (4%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTPA 234
+ + P++A ++G A G L D+ I +++ P R G+ +
Sbjct: 90 VQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAH-- 147
Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
L R V V + +TG SAQ A GL R + + ++ + I N
Sbjct: 148 WTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPA-GKVLGAALRMAHDIATNVAP 206
Query: 295 V-LTLGKQFLYQQMSLNIEEA 314
L K+ L+ + A
Sbjct: 207 ESAALTKRLLWDAQMTGMSAA 227
Score = 43.3 bits (103), Expect = 4e-05
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 95 SGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDL 154
SG ++ A D S + + P++A ++G A G L D+
Sbjct: 66 SGAQISAAAETFAAPRNPDFSASP---VQPAAFELRTPVIAAVNGHAIGIGMTLALHADI 122
Query: 155 AIATTASKFSTP 166
I +++ P
Sbjct: 123 RILAEEGRYAIP 134
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 78.0 bits (193), Expect = 8e-17
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
D I P P++A+++G + G L CDL IA + F G + G F
Sbjct: 114 DFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSF---DGGW 170
Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
+ R V R + A+ A + GL+ VV +LE ET +L+NS
Sbjct: 171 GASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPL-ADLEKETVRWCREMLQNS 229
Query: 293 RSVLTLGKQ 301
L K
Sbjct: 230 PMALRCLKA 238
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 78.5 bits (194), Expect = 8e-17
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 7/141 (4%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTPA 234
+ P++A I+G G CD+ A +KF+ AR G+ F +
Sbjct: 122 PPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGIS-- 179
Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
L R V + ++G A++A GL+ VV+ E+L I
Sbjct: 180 WILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTP-EQLMPRALEYAEDIARYCSP 238
Query: 295 V-LTLGKQFLYQQMSLNIEEA 314
+ + K+ +Y + ++ EA
Sbjct: 239 SSMAVIKRQVYGDATRDVVEA 259
Score = 44.2 bits (105), Expect = 2e-05
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+ P++A I+G G CD+ A +KF+
Sbjct: 122 PPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAV 166
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 77.6 bits (192), Expect = 1e-16
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 8/133 (6%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTPA 234
L+ S R P++ + GVA G ++ DL A + F P G+ ++
Sbjct: 91 LLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGAS-- 148
Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
L ++ + T +A+ A AGL+ +V E+ + + + +
Sbjct: 149 QLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIV---EDAYATAQATAQHLTALPLA 205
Query: 295 VLTLGKQFLYQQM 307
L K + +
Sbjct: 206 SLKQTKALMKHDL 218
Score = 51.4 bits (124), Expect = 9e-08
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Query: 67 ALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLS 125
+A AL RVV ++G + F +G +++ + L+ S
Sbjct: 36 WIAKALDEADQNKDVRVVVLRGAEHDFT-AGNDMKDFMGFVQNPNAGPAGQVPPFVLLKS 94
Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
R P++ + GVA G ++ DL A + F P
Sbjct: 95 AARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIP 135
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 77.2 bits (191), Expect = 1e-16
Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 8/144 (5%)
Query: 176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA- 234
L + P++A + G A A G +L DL +A S F P + G+
Sbjct: 92 RGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLV---AGG 148
Query: 235 ---VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
+ L ++P + + +TG +SA+ A+ G++ + L I N
Sbjct: 149 GGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEP-GAALDAAIALAEKITAN 207
Query: 292 SRSVLTLGKQFLYQQMSLNIEEAY 315
+ K+ + + +++ +
Sbjct: 208 GPLAVAATKRIITESRGWSLDTRF 231
Score = 36.4 bits (85), Expect = 0.008
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
L + P++A + G A A G +L DL +A S F P
Sbjct: 92 RGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIP 138
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 77.4 bits (191), Expect = 1e-16
Identities = 23/156 (14%), Positives = 44/156 (28%), Gaps = 11/156 (7%)
Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS-KFSTPGARH 226
+ V+ + + ++H ++ ++G A LVA CD+ + P A
Sbjct: 94 VSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANL 153
Query: 227 GI---FCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283
G+ +T V+L K + P G I++ +
Sbjct: 154 GLITEGGTT--VSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNA 211
Query: 284 LTSAIL-----ENSRSVLTLGKQFLYQQMSLNIEEA 314
L K+ L +A
Sbjct: 212 KVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKA 247
Score = 48.1 bits (115), Expect = 1e-06
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 105 DKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS-KF 163
E + + + + ++H ++ ++G A LVA CD+ +
Sbjct: 87 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYL 146
Query: 164 STP 166
P
Sbjct: 147 LYP 149
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 77.2 bits (191), Expect = 1e-16
Identities = 25/133 (18%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--- 233
DL+L+++ P+++ I G A AG + D+++A+ +K + G+
Sbjct: 98 DLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGV---AAGDH 154
Query: 234 -AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
A+ V + + +T +S ++A GL++ V ++E+ L + + +
Sbjct: 155 AAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCV-DDDEVLPTATRLAENLAQGA 213
Query: 293 RSVLTLGKQFLYQ 305
++ + K+ L
Sbjct: 214 QNAIRWTKRSLNH 226
Score = 47.9 bits (115), Expect = 1e-06
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 67 ALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLS 125
LA P RVV V+G AF SG E + I DL+L+
Sbjct: 44 DLADVWPVIDRDPDVRVVLVRGEGKAFS-SGGSFELIDETIGDYEGRIRIMREARDLVLN 102
Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
++ P+++ I G A AG + D+++A+ +K
Sbjct: 103 LVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDG 143
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 76.9 bits (190), Expect = 2e-16
Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 8/142 (5%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV- 235
+ + P +A+++G G + CDLAI + F GI P
Sbjct: 97 WQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIP---PGNL 153
Query: 236 ---ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
A+ V +TG Q A GL+ V +L T L +LE +
Sbjct: 154 VSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPL-AQLREVTIELARNLLEKN 212
Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
VL K + L E+
Sbjct: 213 PVVLRAAKHGFKRCRELTWEQN 234
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 76.4 bits (189), Expect = 2e-16
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPL 243
PI+A + G A A G +LV +CDL +A ++KF P + G+ L ++P
Sbjct: 95 PIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLV---AGAGGLLRLPNRIPY 151
Query: 244 GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFL 303
V + +TG +A+DA G I R+V + L + I N + K+ +
Sbjct: 152 QVAMELALTGESFTAEDAAKYGFINRLVDD-GQALDTALELAAKITANGPLAVAATKRII 210
Query: 304 YQQMSLNIEEAY 315
+ S EEA+
Sbjct: 211 IESASWAPEEAF 222
Score = 35.2 bits (82), Expect = 0.020
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 132 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
PI+A + G A A G +LV +CDL +A ++KF P
Sbjct: 95 PIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIP 129
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 75.6 bits (187), Expect = 3e-16
Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 1/159 (0%)
Query: 156 IATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT 215
+ + DL ++L P +A + G A G Q D + +
Sbjct: 64 FNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMAS 123
Query: 216 ASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275
+ F P +HGI CS A L ++ + + A + L+ +VV S
Sbjct: 124 TANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-S 182
Query: 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
L + S K+ + + +E+
Sbjct: 183 ALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQT 221
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 76.1 bits (188), Expect = 4e-16
Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 17/190 (8%)
Query: 133 ILAII---SGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPI 189
I I +G AG DL AT + + D +L R P+
Sbjct: 65 IRCCILTGAGGYFCAGM------DLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPL 118
Query: 190 LAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA----VALTRKVPLGV 245
+A + G A A G +++ D+ +A ++KF A+ ++ P V L R++P V
Sbjct: 119 IAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLY---PMGGSAVRLVRQIPYTV 175
Query: 246 VRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQ 305
+ +TG I+A +A GL+ VV + ++ + I N + + + +
Sbjct: 176 ACDLLLTGRHITAAEAKEMGLVGHVVPD-GQALTKALEIAEIIAANGPLAVQAILRTIRE 234
Query: 306 QMSLNIEEAY 315
++ EA+
Sbjct: 235 TEGMHENEAF 244
Score = 35.6 bits (83), Expect = 0.015
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
D +L R P++A + G A A G +++ D+ +A ++KF
Sbjct: 106 DALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGIS 151
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 75.2 bits (186), Expect = 7e-16
Identities = 51/245 (20%), Positives = 93/245 (37%), Gaps = 41/245 (16%)
Query: 95 SGMELETLAVDKEG--------RPK---------LDEIFSTCSDLMLSILRHPVPILAII 137
S L V+++G RP + + + + H I A I
Sbjct: 4 SMSAARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAA-----WDEIDHDDGIRAAI 58
Query: 138 ---SGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIIS 194
+G A G DL+ S P + +T +L P++A ++
Sbjct: 59 LTGAGSAYCVG----G--DLSDGWMVRDGSAPPLD--PATIGKGLLLSHTLTKPLIAAVN 110
Query: 195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA----VALTRKVPLGVVRSMT 250
G GC+++ D+ ++ + F P + G+ P V L R++P M
Sbjct: 111 GACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLV---PGAGSMVRLKRQIPYTKAMEMI 167
Query: 251 ITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLN 310
+TG P++A +AY+ GL+ VV + + + L I+ N + K+ + + L
Sbjct: 168 LTGEPLTAFEAYHFGLVGHVVPA-GTALDKARSLADRIVRNGPLAVRNAKEAIVRSGWLA 226
Query: 311 IEEAY 315
E+A
Sbjct: 227 EEDAR 231
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 74.5 bits (184), Expect = 1e-15
Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
+L ++ P+P++ I+G A AG QL CDL + + F P +++G+
Sbjct: 98 ELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGL---ALDNW 154
Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
L+ V G R+M ++ ++A+ A + G+ R+ ++ + + I +
Sbjct: 155 SIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIG-----TLADAQAWAAEIARLA 209
Query: 293 RSVLTLGKQFLYQQMSLN 310
+ K+ L ++
Sbjct: 210 PLAIQHAKRVLNDDGAIE 227
Score = 43.7 bits (104), Expect = 3e-05
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+L ++ P+P++ I+G A AG QL CDL + + F P
Sbjct: 98 ELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFP 143
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 73.3 bits (181), Expect = 2e-15
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 8/132 (6%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA----VALTRKVPL 243
P+L + G G +L D+ IA + F+ GI+ P + R
Sbjct: 104 PLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIY---PFGGATIRFPRTAGW 160
Query: 244 GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFL 303
G +T A +A+ G++ +V E + I + + +
Sbjct: 161 GNAMRWMLTADTFDAVEAHRIGIVQEIVPV-GEHVDTAIAIAQTIARQAPLGVQATLRNA 219
Query: 304 YQQMSLNIEEAY 315
+ A
Sbjct: 220 RLAVREGDAAAE 231
Score = 36.0 bits (84), Expect = 0.010
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 132 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
P+L + G G +L D+ IA + F+
Sbjct: 104 PLLVAVHGKVLTLGIELALAADIVIADETATFAQL 138
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 73.3 bits (181), Expect = 3e-15
Identities = 45/250 (18%), Positives = 79/250 (31%), Gaps = 52/250 (20%)
Query: 95 SGMELETLAVDKEG--------RPKLDEIFSTCSDLM------LSILRHPVPILAII--- 137
S L+ L+V E + + S +M + + I ++
Sbjct: 1 SNAMLKFLSVRVEDHIAVATLNHAPANAM---SSQVMHDVTELIDQVEKDDNIRVVVIHG 57
Query: 138 SGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197
G +AG + + A A++ + G + + P++A I G A
Sbjct: 58 EGRFFSAGADIKEFTSVTEAKQATELAQLG--------QVTFERVEKCSKPVIAAIHGAA 109
Query: 198 AAAGCQLVATCDLAIATTASKFS--------TPGA----RHGIFCSTPAVALTRKVPLGV 245
G + +C + AT ++K PG R L R V
Sbjct: 110 LGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQR-----------LPRYVGKAK 158
Query: 246 VRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQ 305
M +T PI+ +A GL+ V + E +T + I S + + L
Sbjct: 159 ACEMMLTSTPITGAEALKWGLVNGVFAE-ETFLDDTLKVAKQIAGKSPATARAVLELLQT 217
Query: 306 QMSLNIEEAY 315
S + E
Sbjct: 218 TKSSHYYEGV 227
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 73.4 bits (181), Expect = 3e-15
Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 8/149 (5%)
Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC 230
L+S I + P P++A I G G L++ CD+ T + F G+
Sbjct: 92 LISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGL-- 149
Query: 231 STPAVA----LTRKV-PLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLT 285
V L + + +V +T T + A +A ++GL++RV + + + L
Sbjct: 150 -AADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALA 208
Query: 286 SAILENSRSVLTLGKQFLYQQMSLNIEEA 314
+ I S + K L +++E+
Sbjct: 209 ADISSKSPVAVQGSKINLIYSRDHSVDES 237
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 73.0 bits (180), Expect = 4e-15
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 10/143 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS-TPGARHGIFCSTP-- 233
L+ ++L VP++A ++G ++ D+ +A ++ F P GI P
Sbjct: 99 RLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAESATFQDGPHFPSGI---VPGD 154
Query: 234 --AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
V + R +TG + A+ A + G + V+S +EL L I E
Sbjct: 155 GAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSE-QELLPRAWELARGIAEK 213
Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
++ L +Q+ +E
Sbjct: 214 PLLARRYARKVLTRQLRRVMEAD 236
Score = 39.1 bits (92), Expect = 8e-04
Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
L+ ++L VP++A ++G ++ D+ +A ++ F
Sbjct: 99 RLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAESATF 140
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 74.1 bits (182), Expect = 5e-15
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA---L 237
R P +A + G A G QL+ D +A++ + FS P A+ GI P A L
Sbjct: 279 HSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGI---IPGAANLRL 335
Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
R V R + + G I A++ L+ VV +EL++ + + + ++
Sbjct: 336 GRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEP-DELDAAIERSLTRLDGDA 389
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 72.6 bits (179), Expect = 5e-15
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPL 243
P +A ++G A G +L DL +A ++F P + G+ A + ++P
Sbjct: 103 PTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLI---AAAGGVFRIAEQLPR 159
Query: 244 GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFL 303
V + +TG P+SA A + GLI VV + + L SAI N+ + K+
Sbjct: 160 KVAMRLLLTGEPLSAAAARDWGLINEVVEA-GSVLDAALALASAITVNAPLSVQASKRIA 218
Query: 304 Y 304
Y
Sbjct: 219 Y 219
Score = 34.4 bits (80), Expect = 0.032
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 132 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
P +A ++G A G +L DL +A ++F P
Sbjct: 103 PTIAAVNGTALGGGTELALASDLVVADERAQFGLP 137
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 71.8 bits (177), Expect = 8e-15
Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 8/135 (5%)
Query: 184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA----VALTR 239
R P++ + G AG +L+ D+A+A ++F+ GI P V R
Sbjct: 103 RRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIP---PLGGSTVRFPR 159
Query: 240 KVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLG 299
+TG A +A L+T VV E + I + +
Sbjct: 160 AAGWTDAMRYILTGDEFDADEALRMRLLTEVVEP-GEELARALEYAERIARAAPLAVRAA 218
Query: 300 KQFLYQQMSLNIEEA 314
Q +Q + A
Sbjct: 219 LQSAFQGRDEGDDAA 233
Score = 35.2 bits (82), Expect = 0.017
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 128 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
R P++ + G AG +L+ D+A+A ++F+
Sbjct: 103 RRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHL 141
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 71.8 bits (177), Expect = 1e-14
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV 235
+ I + P PI++++ G +++ + DL IA + S FS G+ +
Sbjct: 86 RQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGV---PYNL 142
Query: 236 A----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
LTR +V+ + T PI+AQ A G++ VV EELE T + I E
Sbjct: 143 VGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEK 201
Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
+ + + K+ L + +
Sbjct: 202 APLAIAVIKEELRVLGEAHTMNS 224
Score = 35.6 bits (83), Expect = 0.012
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+ I + P PI++++ G +++ + DL IA + S FS
Sbjct: 86 RQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMT 132
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 70.3 bits (173), Expect = 3e-14
Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 10/143 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS-TPGARHGIFCSTP-- 233
++ ++L VP+++ ++G AA + + T D+ +A+ + F P GI P
Sbjct: 108 KVLQNLLDIEVPVISAVNG-AALLHSEYILTTDIILASENTVFQDMPHLNAGI---VPGD 163
Query: 234 --AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
+ + L R T ++AQ AY ++ V+ +L + + +
Sbjct: 164 GVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ-SKLMERAWEIARTLAKQ 222
Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
L + L Q++ + E
Sbjct: 223 PTLNLRYTRVALTQRLKRLVNEG 245
Score = 37.2 bits (87), Expect = 0.004
Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 113 DEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS 164
D+ + ++ ++L VP+++ ++G AA + + T D+ +A+ + F
Sbjct: 100 DKTYWEGKKVLQNLLDIEVPVISAVNG-AALLHSEYILTTDIILASENTVFQ 150
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 69.1 bits (170), Expect = 8e-14
Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 8/143 (5%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
+ I VP++A + G G +L + +A ++ ++ P GIF
Sbjct: 97 RVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIF---VGGG 153
Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
L R + + + M +TG SA + G ++ + + L + + +N+
Sbjct: 154 GSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIEN-GSAYDKALELGNRVAQNA 212
Query: 293 RSVLTLGKQFLYQQMSLNIEEAY 315
Q L N +
Sbjct: 213 PLTNFAVLQALPMIAEANPQTGL 235
Score = 34.8 bits (81), Expect = 0.024
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+ I VP++A + G G +L + +A ++ ++ P
Sbjct: 97 RVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALP 142
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 69.1 bits (170), Expect = 1e-13
Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 44/246 (17%)
Query: 93 GFSGMELETLAVDKEG--------RPK---------LDEIFSTCSDLMLSILRHPVPILA 135
G M ET+ V+++ RP+ ++E+ S + L I A
Sbjct: 18 GPGSMTYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSA-----ATELDDDPDIGA 72
Query: 136 II---SGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAI 192
II S A AAG + +A T A F+ + + P +A
Sbjct: 73 IIITGSAKAFAAGADIKE---MADLTFADAFTADFF--------ATWGKLAAVRTPTIAA 121
Query: 193 ISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPLGVVRS 248
++G A GC+L CD+ IA +KF P + G+ P + LTR +
Sbjct: 122 VAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGV---LPGMGGSQRLTRAIGKAKAMD 178
Query: 249 MTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS 308
+ +TG + A +A +GL++RVV + ++L +E + + I + S S + K+ + +
Sbjct: 179 LILTGRTMDAAEAERSGLVSRVVPA-DDLLTEARATATTISQMSASAARMAKEAVNRAFE 237
Query: 309 LNIEEA 314
++ E
Sbjct: 238 SSLSEG 243
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 68.3 bits (168), Expect = 2e-13
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----L 237
+ P++A ++G+A G +L +CDL +A++A++F P G+ P L
Sbjct: 91 LSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGV---MPGAGGTQRL 147
Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLT 297
T+ + TG +SA++A G++ RVVS E L ET L + E L
Sbjct: 148 TKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSP-ELLMEETMRLAGRLAEQPPLALR 206
Query: 298 LGKQFLYQQMSLNIEEA 314
L K+ + + + + E
Sbjct: 207 LIKEAVQKAVDYPLYEG 223
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 67.9 bits (167), Expect = 2e-13
Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 26/152 (17%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS----------TPGA-- 224
+L L + + + +++ I+G A GC + TCD I ++
Sbjct: 88 ELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWL 147
Query: 225 --RHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETK 282
L + G+ +A G++ +VV E+++S
Sbjct: 148 KDT-----------LENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPE-EQVQSTAL 195
Query: 283 VLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
+ + L K + + + +
Sbjct: 196 SAIAQWMAIPDHARQLTKAMMRKATASRLVTQ 227
Score = 36.4 bits (85), Expect = 0.008
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS 164
+L L + + + +++ I+G A GC + TCD I ++
Sbjct: 88 ELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYC 131
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 67.6 bits (166), Expect = 3e-13
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----L 237
I R P++A ++G A GC+L CD+ A ++F P G P L
Sbjct: 93 ITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGT---IPGAGGTQRL 149
Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLT 297
TR V + M +TG ISAQDA AGL++++ E L E I NS+ ++
Sbjct: 150 TRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIANNSKIIVA 208
Query: 298 LGKQFLYQQMSLNIEEA 314
+ K+ + + + E
Sbjct: 209 MAKESVNAAFEMTLTEG 225
Score = 34.0 bits (79), Expect = 0.041
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
I R P++A ++G A GC+L CD+ A ++F P
Sbjct: 93 ITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQP 133
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 66.4 bits (163), Expect = 7e-13
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----L 237
+ + PI+A ++G A GC+L CDL IA ++F P GI P + L
Sbjct: 96 LTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGI---LPGLGGTQRL 152
Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLT 297
TR V + +TG ++A++A GL++R+V + +L E + I SR
Sbjct: 153 TRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPA-ADLLDEALAVAQRIARMSRPAGR 211
Query: 298 LGKQFLYQQMSLNIEEA 314
K + + +
Sbjct: 212 AVKDAINEAFERPLSAG 228
Score = 34.4 bits (80), Expect = 0.033
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
+ + PI+A ++G A GC+L CDL IA ++F P
Sbjct: 96 LTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQP 136
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 66.4 bits (163), Expect = 8e-13
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 24/151 (15%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS--------TPGA---- 224
M + + P P++A I+G+A G +L CD IA ++ PGA
Sbjct: 93 TTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQ 152
Query: 225 RHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
R L R + +G + + TG ISAQ+A GL+ VV LE + +
Sbjct: 153 R-----------LPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPV-HLLEEKAIEI 200
Query: 285 TSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
I N + L K+ + + +++
Sbjct: 201 AEKIASNGPIAVRLAKEAISNGIQVDLHTGL 231
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 66.4 bits (163), Expect = 9e-13
Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 9/143 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA-TTASKFSTPGARHGIFCSTPAV 235
+ + I R P +A + G G ++ CDL A K P G+
Sbjct: 92 ETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGV---LAGT 148
Query: 236 A----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
L R + M ITG I+ Q+A GL+ RV E T+ + +
Sbjct: 149 GGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQ-AETRERTREYARKLANS 207
Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
+ ++ K + + + A
Sbjct: 208 ATYAVSNIKLAIMNGKEMPLNVA 230
Score = 33.6 bits (78), Expect = 0.051
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA-TTASKFSTP 166
+ + I R P +A + G G ++ CDL A K P
Sbjct: 92 ETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLP 138
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 66.6 bits (162), Expect = 2e-12
Identities = 25/148 (16%), Positives = 41/148 (27%), Gaps = 7/148 (4%)
Query: 174 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA--TTASKFSTPGARHGIFCS 231
T + L S + LA ++G A G +L CD +S S P
Sbjct: 117 TRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLP 176
Query: 232 ----TPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSA 287
V RKV + + A L+ VV + + +
Sbjct: 177 GTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVV-KPNQFDQAIQARALE 235
Query: 288 ILENSRSVLTLGKQFLYQQMSLNIEEAY 315
+ S L + + E+
Sbjct: 236 LAAQSDRPAHAQGVPLTRIERTDREDGL 263
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 64.5 bits (158), Expect = 4e-12
Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 24/150 (16%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS--------TPGA---- 224
+ + ++ P P +A ++G A AG L D ++ KF PG
Sbjct: 106 EAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMG 165
Query: 225 RHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
R LTR V + + +G A++A GLI +V+ +++
Sbjct: 166 R-----------LTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAP-DDVYDSAVAW 213
Query: 285 TSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
LE L K + L E
Sbjct: 214 ARRYLECPPRALAAAKAVINDVFELEATER 243
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 63.8 bits (156), Expect = 7e-12
Identities = 37/225 (16%), Positives = 65/225 (28%), Gaps = 30/225 (13%)
Query: 97 MELETLAVDKEG--------RPKL----DEIFSTCSDLMLSILRHPVPILAIISGV---A 141
ET+ +G P + E+ L+ + P + I
Sbjct: 5 ASYETIKARLDGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADF 64
Query: 142 AAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAG 201
D+ + + ++ L + + P +A + G A AG
Sbjct: 65 FFPH----V--DMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAG 118
Query: 202 CQLVATCDLAIATTAS-KFSTPGARHGIFCSTPAVA----LTRKVPLGVVRSMTITGIPI 256
+ + CD+ A+ + P G P LTR + G +T
Sbjct: 119 SEFLLACDMRFASRENAILGQPEVGIGA---PPGAGAIQHLTRLLGRGRALEAVLTSSDF 175
Query: 257 SAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQ 301
A A G + R V EL+ + + + R L K
Sbjct: 176 DADLAERYGWVNRAVPD-AELDEFVAGIAARMSGFPRDALIAAKS 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 7e-12
Identities = 44/322 (13%), Positives = 84/322 (26%), Gaps = 100/322 (31%)
Query: 10 NYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALA 69
NY A + S L + +A G G
Sbjct: 125 NYITARIMAKRPFDKK-------------SNSALFRAVGEG--NAQLVAIFG-G------ 162
Query: 70 AALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRH 129
QG++ F EL L + + ++ ++ + ++R
Sbjct: 163 -----------------QGNTDDYFE--ELRDLY--QTYHVLVGDLIKFSAETLSELIRT 201
Query: 130 PV----------PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNIL-----VST 174
+ IL + + + + S P ++ V T
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI---------PISCPLIGVIQLAHYVVT 252
Query: 175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP-----------G 223
L P + + + G + + A +A + F G
Sbjct: 253 AKLLGF----TPGELRSYLKGATGHSQGLVTAVA-IAETDSWESFFVSVRKAITVLFFIG 307
Query: 224 AR-HGIF--CSTPAVALTRKVPL--GVVRSM-TITGIPISAQDAYNAGLITRVVSSNEEL 277
R + + S P L + GV M +I+ + + V +N L
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-------VQDYVNKTNSHL 360
Query: 278 ESETKVLTSAILENSRS--VLT 297
+ +V S L N V++
Sbjct: 361 PAGKQVEIS--LVNGAKNLVVS 380
Score = 39.6 bits (92), Expect = 0.001
Identities = 22/159 (13%), Positives = 45/159 (28%), Gaps = 65/159 (40%)
Query: 1 MIQDESVPLN--YYA--AIHAVQVSI----------PDNCII----VGE------GANTM 36
+ E L+ + A+ ++ + P + +GE A+ M
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 37 DIG--------RSLLLNN-LPRHRLDAGTFGTMGV-----GLGFALAAALYC-------- 74
I R + + +PR L +G + + F+ A Y
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 75 -------NHYAPGKRVVCVQGDSAFGFSGMELETLAVDK 106
N+ ++ V +G + A+D
Sbjct: 1838 GWLVEIVNYNVENQQYVA---------AG---DLRALDT 1864
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 62.6 bits (153), Expect = 2e-11
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 9/130 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS-KFSTPGARHGIFCSTPAV 235
+ I P + ++G A G + VA D+A A + A GI P
Sbjct: 97 AVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGI---IPGG 153
Query: 236 A----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
L +V + +T A+ A + G I R + + +EL+ + I
Sbjct: 154 GGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPA-DELDEYVDRVARNIAAL 212
Query: 292 SRSVLTLGKQ 301
V+ K+
Sbjct: 213 PDGVIEAAKR 222
Score = 32.2 bits (74), Expect = 0.18
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS-KFSTP 166
+ I P + ++G A G + VA D+A A +
Sbjct: 97 AVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQI 143
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 61.7 bits (150), Expect = 4e-11
Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 14/210 (6%)
Query: 112 LDEIFSTCSDLMLSILRHPVPILAIISGVAA---AAGCQLVATCDLAIATTASKFSTPGY 168
+D+I ++L + V ++ + G L C L ++ Y
Sbjct: 65 VDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLD--Y 122
Query: 169 NILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI 228
L +A++ G A G + +C IA P +
Sbjct: 123 AQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDL 182
Query: 229 FCSTPAVA----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
F P + + +++ + + + + G SA+ GL+ RVV + + + +
Sbjct: 183 F---PGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPR-GQGVAAVEQV 238
Query: 285 TSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
+ + +Q ++ +EE
Sbjct: 239 I-RESKRTPHAWAAMQQVREMTTAVPLEEM 267
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 61.0 bits (149), Expect = 5e-11
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 26/140 (18%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS--------TPGA---- 224
++ I PVP +A I G+A G +L CD+ +A +++K PG
Sbjct: 96 AVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQ 155
Query: 225 RHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE---ELESET 281
R L R + + + + + + + ++A GLI+ V+ N+ +
Sbjct: 156 R-----------LPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKA 204
Query: 282 KVLTSAILENSRSVLTLGKQ 301
L L + + K
Sbjct: 205 LDLAREFLPQGPVAMRVAKL 224
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 51.8 bits (125), Expect = 1e-07
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
R + + TMGV L +A+ A L P ++VV V GD F S MELET
Sbjct: 410 ARQVMISNGQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQSSMELETAV 461
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 51.8 bits (125), Expect = 1e-07
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 3 QDESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMG 61
E L +Y +A+ ++ I + G +T R L + + F TMG
Sbjct: 358 TKEEGDLQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTP-KNMWRTSPLFATMG 416
Query: 62 VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
+ + L A P ++V + GD AF + ++ T
Sbjct: 417 IAIPGGLGAKNTY----PDRQVWNIIGDGAFSMTYPDVVTNV 454
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 48.5 bits (116), Expect = 1e-06
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 2/121 (1%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVAL 237
L ++ P +A+I G+ G L +AT F+ P G+F
Sbjct: 94 LNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYF 153
Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN--EELESETKVLTSAILENSRSV 295
++ + + +TG + +D Y AG+ T V S LE + L S EN SV
Sbjct: 154 LPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASV 213
Query: 296 L 296
L
Sbjct: 214 L 214
Score = 31.5 bits (72), Expect = 0.34
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 79 PGKRVVCVQGDSAFGF-SGMELETLA-VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAI 136
P ++ ++G F +G ++ ++ +K + F L ++ P +A+
Sbjct: 49 PETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVAL 108
Query: 137 ISGVAAAAGCQLVATCDLAIATTASKFSTP 166
I G+ G L +AT F+ P
Sbjct: 109 IHGITMGGGVGLSVHGQFRVATEKCLFAMP 138
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 48.2 bits (115), Expect = 2e-06
Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVAL 237
L + + P+L G+ G L+A + T S+ + P G++
Sbjct: 134 LDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYF 193
Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN--EELESE 280
++P + + +T ++A DA GL ++ + E +
Sbjct: 194 LNRMPGKMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDA 238
Score = 30.1 bits (68), Expect = 1.0
Identities = 12/65 (18%), Positives = 22/65 (33%)
Query: 102 LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS 161
+A + F L + + P+L G+ G L+A + T S
Sbjct: 114 VAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETS 173
Query: 162 KFSTP 166
+ + P
Sbjct: 174 RIAMP 178
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 44.9 bits (107), Expect = 2e-05
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 3 QDESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMG 61
+ PL Y + AV + I + G ++ R L L + + F TMG
Sbjct: 365 DKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTP-SNRHITSNLFATMG 423
Query: 62 VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGM---ELETLA 103
VG+ A+AA L P ++V + GD M +L T
Sbjct: 424 VGIPGAIAAKLNY----PERQVFNLAGDGGA---SMTMQDLATQV 461
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 44.8 bits (107), Expect = 2e-05
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 14 AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 72
+ D+ I + G T+ R L +N R L + G+M + AL A
Sbjct: 362 LAQQISHFAADDAIFTCDVGTPTVWAARYLKMNG-KRRLLGSFNHGSMANAMPQALGAQA 420
Query: 73 YCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
P ++VV + GD F + ++
Sbjct: 421 TE----PERQVVAMCGDGGFSMLMGDFLSVV 447
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 44.5 bits (106), Expect = 3e-05
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 47 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDK 106
+ + G + MG G+ + A GKR++ V GD AF +G EL
Sbjct: 411 IDAGLMAPGYYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQMTGWELGNCRRLG 466
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 43.8 bits (104), Expect = 5e-05
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC 230
+ + + P +A I G+A G +L C I+ A++ P + G+
Sbjct: 87 GYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVI- 145
Query: 231 STPAVALTRKVP--LGVVRSMTI--TGIPISAQDAYNAGLITRVVSSNEELE 278
P T+++P +G+ +++ + T P+ A++ ++ GLI VV E +
Sbjct: 146 --PGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVT 195
Score = 30.3 bits (69), Expect = 0.97
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 94 FSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCD 153
F M+ + K G +D I P +A I G+A G +L C
Sbjct: 73 FGEMQKGNVKEPKAGYISIDIITDLLEAA-------RKPSVAAIDGLALGGGLELAMACH 125
Query: 154 LAIATTASKFSTP 166
I+ A++ P
Sbjct: 126 ARISAPAAQLGLP 138
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 43.8 bits (104), Expect = 5e-05
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP--L 243
VP +A I+G+A G ++ D + ++K P + GI+ P T ++P +
Sbjct: 103 NVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIY---PGFGGTVRLPRLI 159
Query: 244 GVVRSMTI--TGIPISAQDAYNAGLITRVVSSNEELE 278
GV ++ +G A+DA + VV++++
Sbjct: 160 GVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGA 196
Score = 28.4 bits (64), Expect = 3.3
Identities = 13/67 (19%), Positives = 25/67 (37%)
Query: 100 ETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT 159
E + K +L + + VP +A I+G+A G ++ D +
Sbjct: 73 EFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMAD 132
Query: 160 ASKFSTP 166
++K P
Sbjct: 133 SAKIGLP 139
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 43.7 bits (104), Expect = 6e-05
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
RH ++ G G +G + AL P + VV + GD F F EL A
Sbjct: 432 DRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFLIEELAVGA 483
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 42.9 bits (102), Expect = 9e-05
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
P L G G+MGVG G AL A + G+R + V GD + G+S E +TL
Sbjct: 409 PGGFLCHGYLGSMGVGFGTALGAQVADLE--AGRRTILVTGDGSVGYSIGEFDTLV 462
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 42.5 bits (101), Expect = 1e-04
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
PR + + G +G G AL A L P RV GD A + E
Sbjct: 414 PRRLVTSMAEGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYHFNEFRVAV 465
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 42.5 bits (101), Expect = 1e-04
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 3 QDESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMG 61
S PL + + + + +++ E G + I N + + +G++G
Sbjct: 359 VPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGI-NQTTFPN-NTYGISQVLWGSIG 416
Query: 62 VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
G L AA P KRV+ GD + + E+ T+
Sbjct: 417 FTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMI 458
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 42.3 bits (100), Expect = 1e-04
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
P + +G GTMG GL A+ A + P V+ + GD++F + EL +
Sbjct: 503 PHTFITSGGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMTLTELSSAV 554
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 48/347 (13%), Positives = 98/347 (28%), Gaps = 76/347 (21%)
Query: 4 DESVPLNY---YAAIHAVQVSIPDNCIIVGEGANTM-DIGRSLLLNNLPRHRLDAGTFGT 59
+E + +NY + I Q + E + + + + N+ R +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL----- 138
Query: 60 MGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF--- 116
L AL P K V+ + G G + + L+ K +IF
Sbjct: 139 -------KLRQALL--ELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 117 -STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK----------FST 165
C+ P +L ++ + + D + +
Sbjct: 189 LKNCNS--------PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 166 PGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQ-LVATCDLAIATTASKFSTPGA 224
Y C L +L + V + A C+ L+ T + F +
Sbjct: 241 KPYE----NC----LLVLLN-VQNAKAWN--AFNLSCKILLTTRFKQVTD----FLSAAT 285
Query: 225 RHGIFCSTPAVALTRKVPLGVVRS---MTITGIPISAQDA--YNAGLITRVVSSNEE--- 276
I ++ LT ++ +P +I +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 277 --LESETKVLTSAILENSRSVLT--LGKQFLYQQMSL-----NIEEA 314
LT+ I E+S +VL ++ ++ ++S+ +I
Sbjct: 346 NWKHVNCDKLTTII-ESSLNVLEPAEYRK-MFDRLSVFPPSAHIPTI 390
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 41.8 bits (99), Expect = 2e-04
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
P L + + G G+ A+ A + P + + GD F + +LET+A
Sbjct: 426 PFGFLTSAGCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSNSSDLETIA 477
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 40.7 bits (96), Expect = 4e-04
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
L+ I R+ P+LA I GVA G +L C IA ++ P GI P
Sbjct: 97 SLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGIL---PGAR 153
Query: 237 LTRKVP--LGVVRSMTI--TGIPISAQDAYNAGLITRVVSSN 274
T+ +P +GV ++ + +G +SA +A G++ VV S+
Sbjct: 154 GTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSD 195
Score = 27.2 bits (61), Expect = 9.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
L+ I R+ P+LA I GVA G +L C IA ++ P
Sbjct: 97 SLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 142
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex,
alpha / beta motif, protease, membr protein stomatin,
hydrolase-protein binding complex; 2.25A {Pyrococcus
horikoshii} PDB: 3bpp_A 2deo_A
Length = 230
Score = 39.6 bits (92), Expect = 6e-04
Identities = 19/145 (13%), Positives = 44/145 (30%), Gaps = 20/145 (13%)
Query: 171 LVSTCSDLMLSILRHPVPILAIIS---GVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
+++ I + +P++ + AA+AG + L + G
Sbjct: 52 RADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILG 111
Query: 228 IFCSTP-----------------AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRV 270
+ ++A + + ++ ++A G+I V
Sbjct: 112 YSQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVV 171
Query: 271 VSSNEELESETKVLTSAILENSRSV 295
EL ++ + + I N R V
Sbjct: 172 ARDINELLKKSNGMKTKIPVNGRYV 196
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 40.2 bits (95), Expect = 6e-04
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
P G +G L A+ L P ++V+ V GD + +S L T A
Sbjct: 392 PGSYYFCAA-GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYSISALWTAA 442
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 40.2 bits (95), Expect = 7e-04
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 48 PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF 92
PR L +G G MG GL A+ A++ P VV + GD +F
Sbjct: 416 PRQWLSSGGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSF 456
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate
synthase; transferase, metal-binding; HET: TPP; 2.35A
{Bacillus subtilis}
Length = 604
Score = 39.5 bits (92), Expect = 0.001
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 6/97 (6%)
Query: 8 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV-GLGF 66
+Q +P+N + N+M I R + + R + G G+
Sbjct: 404 VSFEGNLYRILQHLVPENSSLFV--GNSMPI-RDVDTFFEKQDR-PFRIYSNRGANGIDG 459
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
+++A+ V V GD +F L
Sbjct: 460 VVSSAMGV-CEGTKAPVTLVIGDLSFYHDLNGLLAAK 495
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 38.3 bits (90), Expect = 0.002
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 4 DESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 62
S PL+ AV+ N IV E G + L + + +G++G
Sbjct: 372 PSSAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGASTIFLKS--NSRFIGQPLWGSIGY 429
Query: 63 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
AL + + R + GD + + EL
Sbjct: 430 TFPAALGSQIA----DKESRHLLFIGDGSLQLTVQELGLSI 466
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate
synthase; menaquinone biosynthesis, sephchc synthase,
structural genomics; 2.60A {Listeria monocytogenes}
Length = 578
Score = 36.7 bits (85), Expect = 0.009
Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 7/101 (6%)
Query: 4 DESVPLNYYAAIHAVQVSIPDNCII-VGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 62
+ L + ++ +PD + +G D+ + L +
Sbjct: 381 ANTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDG 440
Query: 63 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
+ AL A++ + + + GD +F L
Sbjct: 441 VVSSALGASV------VFQPMFLLIGDLSFYHDMNGLLMAK 475
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 36.4 bits (85), Expect = 0.010
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 21/97 (21%)
Query: 15 IHAVQVSIPDNCIIVGE------GANTMDIGRSLLLNNLPRHR--LDAGTFGTMGVGLGF 66
+Q I II+ + GA + LP + +G++G L
Sbjct: 366 WRTLQTFIRPGDIILADQGTSAFGAIDL---------RLPADVNFIVQPLWGSIGYTLAA 416
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
A A C P +RV+ + GD A + EL ++
Sbjct: 417 AFGAQTAC----PNRRVIVLTGDGAAQLTIQELGSML 449
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 36.4 bits (85), Expect = 0.012
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 21/97 (21%)
Query: 15 IHAVQVSIPDNCIIVGE------GANTMDIGRSLLLNNLPRHR--LDAGTFGTMGVGLGF 66
+ + + N +V E A M LPR +G +G +
Sbjct: 367 VRHINALLTSNTTLVAETGDSWFNAMRM---------TLPRGARVELEMQWGHIGWSVPS 417
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
A A+ + ++ V + GD +F + E+ +
Sbjct: 418 AFGNAMG----SQDRQHVVMVGDGSFQLTAQEVAQMV 450
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 36.0 bits (84), Expect = 0.013
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 47 LPRHR--LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
LP +G +G + A A+ AP +R + + GD +F + E+ +
Sbjct: 400 LPNGARVEYEMQWGHIGWSVPAAFGYAVG----APERRNILMVGDGSFQLTAQEVAQMV 454
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 32.1 bits (73), Expect = 0.22
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 8 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSL---LLNNLPRHRLDAGTFGTMGV-G 63
H + +P+ + +G SL L++ L + + G G
Sbjct: 366 AFGEAQLAHRICDYLPEQGQLF--------VGNSLVVRLIDALSQLPAGYPVYSNRGASG 417
Query: 64 LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
+ L+ A A GK + + GD + + L L
Sbjct: 418 IDGLLSTAAGV-QRASGKPTLAIVGDLSALYDLNALALLR 456
>3pt5_A NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid; SGNH hydrolase,
9-O-acetyl N-acetylneuraminic acid esterase, structural
genomics; 1.60A {Escherichia coli O157}
Length = 337
Score = 31.6 bits (70), Expect = 0.27
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 46 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF 92
+ P +GT+G L A + A V C +G SAF
Sbjct: 90 HHPLATNHQTQYGTVGQALHIARKLLPFIPDNAGILIVPCCRGGSAF 136
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.0
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 8/28 (28%)
Query: 215 TAS-KFSTPGARHGIFCSTPAVALTRKV 241
AS K S PA+A+ +
Sbjct: 26 QASLKLYADD-------SAPALAIKATM 46
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 27.2 bits (59), Expect = 8.2
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 130 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVS-TCSDLMLSILRHPVP 188
++ I+ V L I T KF P Y + + SDL+ +
Sbjct: 65 LTSVVFILICCFIILENIFVL---LTIWKT-KKFHRPMYYFIGNLALSDLLAGVAYTANL 120
Query: 189 ILAIISGVAAAAGCQLVATCDLAIATTASKFS 220
+L+ + + + +A +AS FS
Sbjct: 121 LLSGATTYKLTPAQWFLREGSMFVALSASVFS 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.387
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,747,638
Number of extensions: 294526
Number of successful extensions: 1076
Number of sequences better than 10.0: 1
Number of HSP's gapped: 961
Number of HSP's successfully gapped: 179
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)