RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12573
(315 letters)
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 77.9 bits (191), Expect = 3e-17
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 2/140 (1%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
I R P++A ++G A GC+L CD+ A ++F P G
Sbjct: 88 SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQ 147
Query: 237 -LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSV 295
LTR V + M +TG ISAQDA AGL++++ E I NS+ +
Sbjct: 148 RLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETL-VEEAIQCAEKIANNSKII 206
Query: 296 LTLGKQFLYQQMSLNIEEAY 315
+ + K+ + + + E
Sbjct: 207 VAMAKESVNAAFEMTLTEGN 226
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter
formigenes [TaxId: 847]}
Length = 183
Score = 67.6 bits (164), Expect = 3e-14
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 8 PLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLG 65
+NY ++ V+ + N +V EGAN +D R ++ PR RLD+GT+G MG+G+G
Sbjct: 5 MMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMG 64
Query: 66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELE 100
GK V+ V+GDSAFGFSGMELE
Sbjct: 65 -----YCVAAAAVTGKPVIAVEGDSAFGFSGMELE 94
>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 57.2 bits (137), Expect = 2e-10
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGL 64
S PL + + + + +++ E G + I ++ N + + +G++G
Sbjct: 2 STPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPN--NTYGISQVLWGSIGFTT 59
Query: 65 GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 98
G L AA P KRV+ GD + + E
Sbjct: 60 GATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQE 93
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 204
Score = 54.5 bits (130), Expect = 2e-09
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 8 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
PL V+ + N ++ E ++ + + L N +G +G + A
Sbjct: 2 PLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPN-GARVEYEMQWGHIGWSVPAA 60
Query: 68 LAAALYCNHYAPGKRVVCVQGDSAFGFSGME 98
A+ P +R + + GD +F + E
Sbjct: 61 FGYAVGA----PERRNILMVGDGSFQLTAQE 87
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 52.4 bits (124), Expect = 1e-08
Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 1/176 (0%)
Query: 140 VAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA 199
V G A DLA ++ + L + +P P +A ++G A A
Sbjct: 48 VLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVA 107
Query: 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQ 259
G L CDL + ++ + G + +V L R V + + +TG + A+
Sbjct: 108 GGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAR 167
Query: 260 DAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
+A GL+ R+ + LE + +N+ + L L K+ L + +E+ +
Sbjct: 168 EAKALGLVNRIAPPGKALEEAKALAEEVA-KNAPTSLRLTKELLLALPGMGLEDGF 222
Score = 38.1 bits (87), Expect = 8e-04
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA-VDKEGRPKLDEIFSTCSDLMLS 125
+L AL PG R V + G +G +L L V + G + + L
Sbjct: 30 SLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHR 89
Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN 169
+ +P P +A ++G A A G L CDL + ++
Sbjct: 90 VYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVK 133
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus
viridans [TaxId: 1377]}
Length = 229
Score = 50.3 bits (119), Expect = 6e-08
Identities = 12/70 (17%), Positives = 22/70 (31%)
Query: 8 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
L +Y +A+ ++ I + N+ L + F TMG+ +
Sbjct: 2 DLQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGG 61
Query: 68 LAAALYCNHY 77
L A
Sbjct: 62 LGAKNTYPDR 71
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 196
Score = 46.1 bits (108), Expect = 1e-06
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 8 PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
L +Q I II+ + + L L + + +G++G L A
Sbjct: 4 SLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPA-DVNFIVQPLWGSIGYTLAAA 62
Query: 68 LAAALYCNHY 77
A C +
Sbjct: 63 FGAQTACPNR 72
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 44.7 bits (104), Expect = 6e-06
Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 2/143 (1%)
Query: 175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA 234
I + P P++A I G G L++ CD+ T + F G+
Sbjct: 96 YQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGT 155
Query: 235 VALTRKVPLGVVRS--MTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
+ KV +T T + A +A ++GL++RV + + + L + I S
Sbjct: 156 LQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS 215
Query: 293 RSVLTLGKQFLYQQMSLNIEEAY 315
+ K L +++E+
Sbjct: 216 PVAVQGSKINLIYSRDHSVDESL 238
Score = 37.4 bits (85), Expect = 0.001
Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFST-------- 118
L R V V G SG++L +A D P D
Sbjct: 35 ELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLIS 94
Query: 119 -CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA 157
I + P P++A I G G L++ CD+
Sbjct: 95 RYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYC 134
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 198
Score = 41.1 bits (95), Expect = 5e-05
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 8 PLNYYAAIHAV-----QVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 62
+ + I ++ + + P IV + G + P L + + G
Sbjct: 7 GMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGY 66
Query: 63 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 98
G+ AA+ P + + GD F + +
Sbjct: 67 GIP----AAIGAQMARPDQPTFLIAGDGGFHSNSSD 98
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 40.0 bits (92), Expect = 2e-04
Identities = 25/244 (10%), Positives = 65/244 (26%), Gaps = 26/244 (10%)
Query: 97 MELETLAVDKEG--------RPK---------LDEIFSTCSDLMLSILRHPVPILAIISG 139
+ E ++ EG P + + + I +
Sbjct: 2 RQNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRF 61
Query: 140 VAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA 199
++ A + +A ++ + V+ + + ++H ++ ++G A
Sbjct: 62 FSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIG 121
Query: 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTI--TGIPIS 257
LVA CD+ + + + + ++ + G + P
Sbjct: 122 LSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFK 181
Query: 258 AQDAYNAGLITRVVSSNEELESET------KVLTSAILENSRSVLTLGKQFLYQQMSLNI 311
G I++ + +E + L + K+ L
Sbjct: 182 YDIMCENGFISKNFNM-PSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAF 240
Query: 312 EEAY 315
+A
Sbjct: 241 NKAN 244
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 228
Score = 37.6 bits (86), Expect = 0.001
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 63
+ PL Y + AV + I + G ++ R L L RH +
Sbjct: 2 QEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHI-----TSNLFAT 56
Query: 64 LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 98
+G + A+ P ++V + GD + +
Sbjct: 57 MGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQD 91
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana), chloroplast
[TaxId: 3702]}
Length = 208
Score = 34.8 bits (79), Expect = 0.006
Identities = 34/188 (18%), Positives = 56/188 (29%), Gaps = 17/188 (9%)
Query: 8 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 66
+ AI + II G + M + + G +GF
Sbjct: 2 AIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQFYNYKKPRQWLSSGGL-----GAMGF 56
Query: 67 ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSI 126
L AA+ + P VV + GD +F + EL T+ L ++ L +
Sbjct: 57 GLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIR-----VENLPVKVLLLNNQHLGM 111
Query: 127 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDL---MLSI 182
+ A A D + G V+ +DL + ++
Sbjct: 112 VMQWED--RFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTM 169
Query: 183 LRHPVPIL 190
L P P L
Sbjct: 170 LDTPGPYL 177
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 183
Score = 34.2 bits (77), Expect = 0.011
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 2 IQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMG 61
+ ++ L+ + P+N I + E +T L P G
Sbjct: 5 VDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLG- 63
Query: 62 VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDK 106
FAL AA+ P ++V+ V GD + +S L T A
Sbjct: 64 ----FALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYN 104
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 192
Score = 32.2 bits (72), Expect = 0.043
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGL 64
L+ + A+Q + + + + G+ + I R L + + G
Sbjct: 2 QFALHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTM----- 56
Query: 65 GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDK 106
G AL A+ P ++VV V GD F S MELET K
Sbjct: 57 GVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLK 98
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB
{Pectobacterium carotovorum [TaxId: 554]}
Length = 230
Score = 29.8 bits (65), Expect = 0.34
Identities = 4/41 (9%), Positives = 10/41 (24%)
Query: 275 EELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
L + S K+ + + +E+
Sbjct: 182 SALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQTR 222
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 404
Score = 28.0 bits (62), Expect = 1.7
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
+N ++ S ++ +++ + PI+ I G V A ++ AR G
Sbjct: 150 FNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAG 209
Query: 228 IFCSTPAVAL 237
+ V +
Sbjct: 210 VLEPQGMVGI 219
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 26.5 bits (57), Expect = 4.3
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 65 GFALAAALYCNHYAPGKRVVCVQGDSA 91
G A+A AL P VV + D
Sbjct: 256 GGAVAGALRVAKANPDAVVVAIICDRG 282
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 26.4 bits (57), Expect = 4.8
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 65 GFALAAAL-YCNHYAPGKRVVCVQGDSA 91
G +A A+ G+R V + DS
Sbjct: 309 GSTVAVAVKAAQELQEGQRCVVILPDSV 336
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 192
Score = 25.8 bits (56), Expect = 5.6
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 256 ISAQDAYNAGLITRVVSSN 274
+SAQ+ G I ++++N
Sbjct: 174 MSAQETLEYGFIDEIMANN 192
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 26.0 bits (56), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 65 GFALAAAL-YCNHYAPGKRVVCVQGDSA 91
G + AAL PGKRV C+ D
Sbjct: 265 GGIVWAALQVARELGPGKRVACISPDGG 292
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 25.8 bits (56), Expect = 7.5
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 65 GFALAAAL-YCNHYAPGKRVVCVQGDSA 91
G +AAAL P RVV V D A
Sbjct: 259 GANVAAALKVAQKLGPDARVVTVAPDHA 286
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 25.6 bits (55), Expect = 9.7
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 65 GFALAAALYCNHYAPGKRVVCV 86
+ AAA KR+ +
Sbjct: 280 CLSFAAARAMKEKLKNKRIGII 301
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.387
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,083,616
Number of extensions: 47421
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 27
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)