BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12574
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
Cysteine-Rich Domain Of Frizzled 8
Length = 316
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 88/155 (56%), Gaps = 24/155 (15%)
Query: 90 KMNLHNNEAGRCRETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTL 149
++ HN RET+F++AI+SA V +T+ R+C+ G ++C CD S
Sbjct: 50 QLATHNGLRSATRETSFVHAISSAGVMYTLTRNCSMGDFDNCGCDDSR------------ 97
Query: 150 NNVAGVRDWEWGGCSDNIGFGFKFSREFVDTGERGRSLREKMNLHNNEAGRAHFNMVLNV 209
N G R W WGGCSDN FG + S+ FVD E G+ R MNLHNNEAGR
Sbjct: 98 NGRIGGRGWVWGGCSDNAEFGERISKLFVDGLETGQDARALMNLHNNEAGRL-------- 149
Query: 210 SLLQHVMAEMRQECKCHGMSGSCTVKTCWMRLPNF 244
V M++ CKCHG+SGSC+++TCW++L F
Sbjct: 150 ----AVKETMKRTCKCHGISGSCSIQTCWLQLAEF 180
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 72/130 (55%), Gaps = 18/130 (13%)
Query: 2 RETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWEWG 61
RET+F++AI+SA V +T+ R+C+ G ++C CD S N G R W WG
Sbjct: 62 RETSFVHAISSAGVMYTLTRNCSMGDFDNCGCDDSR------------NGRIGGRGWVWG 109
Query: 62 GCSDNIGFGFKFSREFVDTGERGRSLREKMNLHNNEAGRCRETAFIYAITSAAVTHTVAR 121
GCSDN FG + S+ FVD E G+ R MNLHNNEAGR A + H ++
Sbjct: 110 GCSDNAEFGERISKLFVDGLETGQDARALMNLHNNEAGR---LAVKETMKRTCKCHGISG 166
Query: 122 SCAEGSIESC 131
SC SI++C
Sbjct: 167 SC---SIQTC 173
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Antipain, And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 26 GSIESCTCDYSHQSKGQRPTKTTLN-NVAGVRDWEWGGCSDNI 67
GS + CT YS +R + L+ NV G ++ W CSD I
Sbjct: 2 GSYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTI 44
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 126 GSIESCTCDYSHQSKGQRPTKTTLN-NVAGVRDWEWGGCSDNI 167
GS + CT YS +R + L+ NV G ++ W CSD I
Sbjct: 2 GSYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTI 44
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 124 AEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWEWGGCSDNIGFGFKFSREFVDTGER 183
+G+I + +S GQ PT+ L ++ D + G D F +R+ DT +
Sbjct: 315 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMMARKMKDT-DS 373
Query: 184 GRSLREKMNLHNNEAGRAHFNMVLNVSLLQHVMAEMRQEC 223
+RE + + + N ++ + L+HVM + ++
Sbjct: 374 EEEIREAFRVFDKDG-----NGYISAAELRHVMTNLGEKL 408
>pdb|1KHJ|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic Of
The Transition States With Aluminium Fluoride
pdb|1KHJ|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic Of
The Transition States With Aluminium Fluoride
pdb|1KHK|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHK|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHL|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHL|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHN|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc Form
pdb|1KHN|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc Form
Length = 449
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 89/237 (37%), Gaps = 41/237 (17%)
Query: 18 TVARSCAEGS------IESC--TCDYSHQS---KGQRPTKTTLNNVAGVRDWEWGGCSDN 66
T AR+ AEG+ I++ T Y+H + K +P T ++ A W G + N
Sbjct: 59 TAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVT-DSAASATAWSTGVKTYN 117
Query: 67 IGFGFKFSREFVDTGERGR-SLREKMNLHNNEAGRCRETAFIYAITSAAVTHTVARSCAE 125
G VD E+ ++ E G +A +A V H +R C
Sbjct: 118 GALG-------VDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYG 170
Query: 126 GSIESCTCDYSHQSKGQRP--TKTTLNNVAGVRDWEWGGCSDNIGFGFKFSREFVDTGE- 182
S S C + KG + T+ LN A V +G G K E GE
Sbjct: 171 PSATSQKCPGNALEKGGKGSITEQLLNARADV----------TLGGGAKTFAETATAGEW 220
Query: 183 RGRSLREKMNLHNNEAGRAHFNMVLNVSLLQHVMAEMRQECKCHGMSGSCTVKTCWM 239
+G++LRE EA + +V + + L V E Q+ G+ + W+
Sbjct: 221 QGKTLRE-------EAEARGYQLVSDAASLNSVT-EANQQKPLLGLFADGNMPVRWL 269
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 27 SIESCTCDYSHQSKGQRPTKTTLN-NVAGVRDWEWGGCSDNI 67
S + CT YS +R + L+ NV G ++ W CSD I
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTI 42
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 127 SIESCTCDYSHQSKGQRPTKTTLN-NVAGVRDWEWGGCSDNI 167
S + CT YS +R + L+ NV G ++ W CSD I
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTI 42
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 27 SIESCTCDYSHQSKGQRPTKTTLN-NVAGVRDWEWGGCSDNI 67
S + CT YS +R + L+ NV G ++ W CSD I
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTI 42
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 127 SIESCTCDYSHQSKGQRPTKTTLN-NVAGVRDWEWGGCSDNI 167
S + CT YS +R + L+ NV G ++ W CSD I
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTI 42
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 27 SIESCTCDYSHQSKGQRPTKTTLN-NVAGVRDWEWGGCSDNI 67
S + CT YS +R + L+ NV G ++ W CSD I
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTI 42
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 127 SIESCTCDYSHQSKGQRPTKTTLN-NVAGVRDWEWGGCSDNI 167
S + CT YS +R + L+ NV G ++ W CSD I
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTI 42
>pdb|1Y7A|A Chain A, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
pdb|1Y7A|B Chain B, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
Length = 449
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 88/237 (37%), Gaps = 41/237 (17%)
Query: 18 TVARSCAEGS------IESC--TCDYSHQS---KGQRPTKTTLNNVAGVRDWEWGGCSDN 66
T AR+ AEG+ I++ T Y+H + K +P T ++ A W G + N
Sbjct: 59 TAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVT-DSAASATAWSTGVKTYN 117
Query: 67 IGFGFKFSREFVDTGERGR-SLREKMNLHNNEAGRCRETAFIYAITSAAVTHTVARSCAE 125
G VD E+ ++ E G +A +A V H +R C
Sbjct: 118 GALG-------VDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYG 170
Query: 126 GSIESCTCDYSHQSKGQRP--TKTTLNNVAGVRDWEWGGCSDNIGFGFKFSREFVDTGE- 182
S S C + KG + T+ LN A V +G G K E GE
Sbjct: 171 PSATSEKCPGNALEKGGKGSITEQLLNARADV----------TLGGGAKTFAETATAGEW 220
Query: 183 RGRSLREKMNLHNNEAGRAHFNMVLNVSLLQHVMAEMRQECKCHGMSGSCTVKTCWM 239
+G++LRE+ + +V + + L V E Q+ G+ + W+
Sbjct: 221 QGKTLREQAQARG-------YQLVSDAASLNSVT-EANQQKPLLGLFADGNMPVRWL 269
>pdb|3BDF|A Chain A, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDF|B Chain B, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDG|A Chain A, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI
ALKALINE Phosphatase
Length = 458
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 88/237 (37%), Gaps = 41/237 (17%)
Query: 18 TVARSCAEGS------IESC--TCDYSHQS---KGQRPTKTTLNNVAGVRDWEWGGCSDN 66
T AR+ AEG+ I++ T Y+H + K +P T ++ A W G + N
Sbjct: 60 TAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVT-DSAASATAWSTGVKTYN 118
Query: 67 IGFGFKFSREFVDTGERGR-SLREKMNLHNNEAGRCRETAFIYAITSAAVTHTVARSCAE 125
G VD E+ ++ E G A+ +A V H +R C
Sbjct: 119 GALG-------VDIHEKDHPTILEMAKAAGLATGNVSTAELQDAVPAALVAHVTSRKCYG 171
Query: 126 GSIESCTCDYSHQSKGQRP--TKTTLNNVAGVRDWEWGGCSDNIGFGFKFSREFVDTGE- 182
S S C + KG + T+ LN A V +G G K E GE
Sbjct: 172 PSATSEKCPGNALEKGGKGSITEQLLNARADV----------TLGGGAKTFAETATAGEW 221
Query: 183 RGRSLREKMNLHNNEAGRAHFNMVLNVSLLQHVMAEMRQECKCHGMSGSCTVKTCWM 239
+G++LRE+ + +V + + L V E Q+ G+ + W+
Sbjct: 222 QGKTLREQAQARG-------YQLVSDAASLNSVT-EANQQKPLLGLFADGNMPVRWL 270
>pdb|1ANI|A Chain A, Alkaline Phosphatase (D153h, K328h)
pdb|1ANI|B Chain B, Alkaline Phosphatase (D153h, K328h)
Length = 446
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 88/237 (37%), Gaps = 41/237 (17%)
Query: 18 TVARSCAEGS------IESC--TCDYSHQS---KGQRPTKTTLNNVAGVRDWEWGGCSDN 66
T AR+ AEG+ I++ T Y+H + K +P T ++ A W G + N
Sbjct: 56 TAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVT-DSAASATAWSTGVKTYN 114
Query: 67 IGFGFKFSREFVDTGERGR-SLREKMNLHNNEAGRCRETAFIYAITSAAVTHTVARSCAE 125
G VD E+ ++ E G +A +A V H +R C
Sbjct: 115 GALG-------VDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYG 167
Query: 126 GSIESCTCDYSHQSKGQRP--TKTTLNNVAGVRDWEWGGCSDNIGFGFKFSREFVDTGE- 182
S S C + KG + T+ LN A V +G G K E GE
Sbjct: 168 PSATSEKCPGNALEKGGKGSITEQLLNARADV----------TLGGGAKTFAETATAGEW 217
Query: 183 RGRSLREKMNLHNNEAGRAHFNMVLNVSLLQHVMAEMRQECKCHGMSGSCTVKTCWM 239
+G++LRE+ + +V + + L V E Q+ G+ + W+
Sbjct: 218 QGKTLREQAQARG-------YQLVSDAASLNSVT-EANQQKPLLGLFADGNMPVRWL 266
>pdb|2ANH|A Chain A, Alkaline Phosphatase (D153h)
pdb|2ANH|B Chain B, Alkaline Phosphatase (D153h)
Length = 446
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 88/237 (37%), Gaps = 41/237 (17%)
Query: 18 TVARSCAEGS------IESC--TCDYSHQS---KGQRPTKTTLNNVAGVRDWEWGGCSDN 66
T AR+ AEG+ I++ T Y+H + K +P T ++ A W G + N
Sbjct: 56 TAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVT-DSAASATAWSTGVKTYN 114
Query: 67 IGFGFKFSREFVDTGERGR-SLREKMNLHNNEAGRCRETAFIYAITSAAVTHTVARSCAE 125
G VD E+ ++ E G +A +A V H +R C
Sbjct: 115 GALG-------VDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYG 167
Query: 126 GSIESCTCDYSHQSKGQRP--TKTTLNNVAGVRDWEWGGCSDNIGFGFKFSREFVDTGE- 182
S S C + KG + T+ LN A V +G G K E GE
Sbjct: 168 PSATSEKCPGNALEKGGKGSITEQLLNARADV----------TLGGGAKTFAETATAGEW 217
Query: 183 RGRSLREKMNLHNNEAGRAHFNMVLNVSLLQHVMAEMRQECKCHGMSGSCTVKTCWM 239
+G++LRE+ + +V + + L V E Q+ G+ + W+
Sbjct: 218 QGKTLREQAQARG-------YQLVSDAASLNSVT-EANQQKPLLGLFADGNMPVRWL 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,969,142
Number of Sequences: 62578
Number of extensions: 263950
Number of successful extensions: 523
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 112
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)