Query psy12574
Match_columns 244
No_of_seqs 228 out of 687
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:50:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3913|consensus 100.0 4.5E-51 9.8E-56 372.0 9.7 128 93-244 103-230 (356)
2 smart00097 WNT1 found in Wnt-1 100.0 2.8E-46 6.2E-51 339.1 10.0 128 93-244 54-181 (305)
3 PF00110 wnt: wnt family; Int 100.0 1E-43 2.3E-48 323.6 7.0 126 95-244 60-185 (310)
4 KOG3913|consensus 100.0 1E-34 2.3E-39 264.8 8.0 109 1-133 111-220 (356)
5 smart00097 WNT1 found in Wnt-1 100.0 1.8E-31 3.9E-36 242.4 8.6 109 1-133 62-171 (305)
6 PF00110 wnt: wnt family; Int 99.9 6E-29 1.3E-33 226.7 1.9 109 1-133 66-175 (310)
7 PF13085 Fer2_3: 2Fe-2S iron-s 27.4 50 0.0011 25.8 2.2 16 220-236 49-64 (110)
8 PRK12385 fumarate reductase ir 13.1 1.5E+02 0.0032 26.3 2.2 14 222-236 57-70 (244)
9 PRK07570 succinate dehydrogena 13.0 1.4E+02 0.003 26.6 2.1 16 220-236 55-70 (250)
10 CHL00020 psbN photosystem II p 12.3 2.1E+02 0.0045 18.7 2.2 18 3-20 2-19 (43)
No 1
>KOG3913|consensus
Probab=100.00 E-value=4.5e-51 Score=372.00 Aligned_cols=128 Identities=58% Similarity=1.112 Sum_probs=118.7
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhcCCCCCccCCCCCCCCCCCCCCcccccccCCCCCccccCCCCchhhhHH
Q psy12574 93 LHNNEAGRCRETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWEWGGCSDNIGFGFK 172 (244)
Q Consensus 93 lhN~~ag~~rEtAfv~ai~sagv~~~v~raC~~G~~~~C~C~~~~~~~~~~~~~~~~~~~~~~~~~~w~gC~dnv~~g~~ 172 (244)
+...+..++||+||+|||++|||+|+|+++|+.|.+.+|+||..+.+.+ .+++|+||||||||+||++
T Consensus 103 ~g~~l~~g~REsAFv~AIssAgV~havtraCs~G~l~~CgCd~~~~~~~------------~~~~w~WGGCsDnv~fG~~ 170 (356)
T KOG3913|consen 103 FGPLLSRGTRETAFVYAISSAGVAHAVTRACSQGNLESCGCDPSPNGKS------------GPEGWEWGGCSDNVDFGIR 170 (356)
T ss_pred cchhhcccchHHHHHHHHHHhHHHHHHHHHhcCCCCCCcCCCCCCCCCC------------CCCCccccCCCCchHHHHH
Confidence 3344566899999999999999999999999999999999998766432 3466999999999999999
Q ss_pred hhhhhhccCcCCCchHHHHHhhhhhhchhhhhhHHHHHHHHHHHHhccccceeeccCCCcccceecccCCCC
Q psy12574 173 FSREFVDTGERGRSLREKMNLHNNEAGRAHFNMVLNVSLLQHVMAEMRQECKCHGMSGSCTVKTCWMRLPNF 244 (244)
Q Consensus 173 ~s~~f~d~~~~~~~~~~~m~~HNn~~Gr~~~~~~~~~~~~~~v~~~~~~~CkChG~SGSC~~ktCw~~lp~F 244 (244)
||++|||.+|+.+|++++||||||+|||+| |.++|+++||||||||||++||||++||+|
T Consensus 171 fsr~FlD~re~~~d~r~lmnlHNNeaGR~a------------v~~~m~~~CKCHGvSGSC~~KTCW~~lp~F 230 (356)
T KOG3913|consen 171 FSRKFLDAREKRKDARALMNLHNNEAGRKA------------VKKNMRRECKCHGVSGSCTVKTCWKQLPDF 230 (356)
T ss_pred HHHHhccccccccCHHHHHHHhhhHHHHHH------------HHHhhhhcccccCccccchhhhHHhhCccH
Confidence 999999999999999999999999999999 999999999999999999999999999998
No 2
>smart00097 WNT1 found in Wnt-1.
Probab=100.00 E-value=2.8e-46 Score=339.09 Aligned_cols=128 Identities=60% Similarity=1.182 Sum_probs=116.9
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhcCCCCCccCCCCCCCCCCCCCCcccccccCCCCCccccCCCCchhhhHH
Q psy12574 93 LHNNEAGRCRETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWEWGGCSDNIGFGFK 172 (244)
Q Consensus 93 lhN~~ag~~rEtAfv~ai~sagv~~~v~raC~~G~~~~C~C~~~~~~~~~~~~~~~~~~~~~~~~~~w~gC~dnv~~g~~ 172 (244)
+.+.+..++||+||||||++|||+|+|+++|+.|.+.+|+||....+.. ..++|+||||+|||.||++
T Consensus 54 ~~~~l~~~trEtAfv~Ai~sAgv~~~itraCs~G~l~~C~Cd~~~~~~~------------~~~~w~WgGCsdnv~~G~~ 121 (305)
T smart00097 54 FGKVLRQGTRETAFVYAISSAGVAHAVTRACSEGELDSCGCDYRKRGRA------------GGRGWKWGGCSDNIDFGIR 121 (305)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC------------CCCCcccCCCCccHHHHHH
Confidence 4455567999999999999999999999999999999999987654321 2347999999999999999
Q ss_pred hhhhhhccCcCCCchHHHHHhhhhhhchhhhhhHHHHHHHHHHHHhccccceeeccCCCcccceecccCCCC
Q psy12574 173 FSREFVDTGERGRSLREKMNLHNNEAGRAHFNMVLNVSLLQHVMAEMRQECKCHGMSGSCTVKTCWMRLPNF 244 (244)
Q Consensus 173 ~s~~f~d~~~~~~~~~~~m~~HNn~~Gr~~~~~~~~~~~~~~v~~~~~~~CkChG~SGSC~~ktCw~~lp~F 244 (244)
|+++|||++++.++++.+||||||+|||+| |.++|+++||||||||||++||||++||+|
T Consensus 122 ~s~~FlD~~~~~~d~r~lmnlHNn~aGR~~------------v~~~~~~~CkCHGvSGSC~~kTCw~~l~~F 181 (305)
T smart00097 122 FSREFVDARERGKDARALMNLHNNEAGRLA------------VKKTMKRECKCHGVSGSCTVKTCWLQLPDF 181 (305)
T ss_pred HHHHHHhcccccccHHHHHHHhhhHHHHHH------------HHHHHHHhccccCccCCccccchHhhCCCH
Confidence 999999998887899999999999999999 999999999999999999999999999998
No 3
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=100.00 E-value=1e-43 Score=323.57 Aligned_cols=126 Identities=55% Similarity=1.073 Sum_probs=95.1
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhcCCCCCccCCCCCCCCCCCCCCcccccccCCCCCccccCCCCchhhhHHhh
Q psy12574 95 NNEAGRCRETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWEWGGCSDNIGFGFKFS 174 (244)
Q Consensus 95 N~~ag~~rEtAfv~ai~sagv~~~v~raC~~G~~~~C~C~~~~~~~~~~~~~~~~~~~~~~~~~~w~gC~dnv~~g~~~s 174 (244)
+.+..++||+||||||++|||+|+|+++|+.|.+..|+|+....... .+..|+|+||+|||.||++|+
T Consensus 60 ~~~~~gtrE~Afv~Ai~sAgv~~~itraCs~G~l~~C~C~~~~~~~~------------~~~~~~wggCsdni~~G~~~s 127 (310)
T PF00110_consen 60 PILKKGTRETAFVYAISSAGVAHSITRACSRGKLKSCGCDRNPRGSS------------SQNTWQWGGCSDNIKFGIKFS 127 (310)
T ss_dssp TT--S--HHHHHHHHHHHHHHHHHHHHHHHTTT-SS-----TTTTSE------------EETTEEE-S----HHHHHHHH
T ss_pred cccccCcccceeeEhhhcCchHHHHHHHhhcccCCcCCCcccccccc------------cccccccCCcccccccchHHH
Confidence 35667999999999999999999999999999999999998765321 234599999999999999999
Q ss_pred hhhhccCcCCCchHHHHHhhhhhhchhhhhhHHHHHHHHHHHHhccccceeeccCCCcccceecccCCCC
Q psy12574 175 REFVDTGERGRSLREKMNLHNNEAGRAHFNMVLNVSLLQHVMAEMRQECKCHGMSGSCTVKTCWMRLPNF 244 (244)
Q Consensus 175 ~~f~d~~~~~~~~~~~m~~HNn~~Gr~~~~~~~~~~~~~~v~~~~~~~CkChG~SGSC~~ktCw~~lp~F 244 (244)
++|||+++...+.+.+||+|||+|||++ |.++|+++||||||||||++||||++||+|
T Consensus 128 r~Fld~~~~~~~~~~~mn~HNn~aGR~~------------v~~~~~~~CkCHGvSGSC~~ktCw~~l~~f 185 (310)
T PF00110_consen 128 RRFLDAREKGSDARSLMNLHNNEAGRKA------------VKKNMKKKCKCHGVSGSCTVKTCWRSLPPF 185 (310)
T ss_dssp HHHHHHH--SSSHHHHHHHHHHHHHHHH------------HHHT-EEEEEE-SGGG-TTSEEEEEE---H
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhh------------hcccccceEccccccCCCcceEEEEcCCcH
Confidence 9999999988899999999999999999 999999999999999999999999999998
No 4
>KOG3913|consensus
Probab=100.00 E-value=1e-34 Score=264.83 Aligned_cols=109 Identities=55% Similarity=1.042 Sum_probs=100.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCceecCCCCCcchhhHHHHhhhcc
Q psy12574 1 CRETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWEWGGCSDNIGFGFKFSREFVDT 80 (244)
Q Consensus 1 ~REtAfv~AissAgv~~~varaCs~G~l~~C~Cd~~~~~~~~~~~~~~~~~~~~~~~w~WgGCsdnv~fG~~fsr~Fld~ 80 (244)
+||+||||||+||||+|+|||||++|.|+.||||.++++.. ++++|+||||||||+||++|+|+|+|.
T Consensus 111 ~REsAFv~AIssAgV~havtraCs~G~l~~CgCd~~~~~~~------------~~~~w~WGGCsDnv~fG~~fsr~FlD~ 178 (356)
T KOG3913|consen 111 TRETAFVYAISSAGVAHAVTRACSQGNLESCGCDPSPNGKS------------GPEGWEWGGCSDNVDFGIRFSRKFLDA 178 (356)
T ss_pred chHHHHHHHHHHhHHHHHHHHHhcCCCCCCcCCCCCCCCCC------------CCCCccccCCCCchHHHHHHHHHhccc
Confidence 69999999999999999999999999999999997654311 235699999999999999999999999
Q ss_pred CcCccchhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhc-CCCCCccCC
Q psy12574 81 GERGRSLREKMNLHNNEAGRCRETAFIYAITSAAVTHTVARSCA-EGSIESCTC 133 (244)
Q Consensus 81 ~e~~~~~r~~m~lhN~~ag~~rEtAfv~ai~sagv~~~v~raC~-~G~~~~C~C 133 (244)
+|+.+|++++|++|||++|+ .+|...+.+.|+ ||++++|.-
T Consensus 179 re~~~d~r~lmnlHNNeaGR------------~av~~~m~~~CKCHGvSGSC~~ 220 (356)
T KOG3913|consen 179 REKRKDARALMNLHNNEAGR------------KAVKKNMRRECKCHGVSGSCTV 220 (356)
T ss_pred cccccCHHHHHHHhhhHHHH------------HHHHHhhhhcccccCccccchh
Confidence 99999999999999999999 788889999999 999999985
No 5
>smart00097 WNT1 found in Wnt-1.
Probab=99.97 E-value=1.8e-31 Score=242.42 Aligned_cols=109 Identities=61% Similarity=1.128 Sum_probs=97.8
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCceecCCCCCcchhhHHHHhhhcc
Q psy12574 1 CRETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWEWGGCSDNIGFGFKFSREFVDT 80 (244)
Q Consensus 1 ~REtAfv~AissAgv~~~varaCs~G~l~~C~Cd~~~~~~~~~~~~~~~~~~~~~~~w~WgGCsdnv~fG~~fsr~Fld~ 80 (244)
+||+||||||+||||+|+||+||++|.|..|+||...++ . +..++|+||||+|||.||++|+++|||+
T Consensus 62 trEtAfv~Ai~sAgv~~~itraCs~G~l~~C~Cd~~~~~--~----------~~~~~w~WgGCsdnv~~G~~~s~~FlD~ 129 (305)
T smart00097 62 TRETAFVYAISSAGVAHAVTRACSEGELDSCGCDYRKRG--R----------AGGRGWKWGGCSDNIDFGIRFSREFVDA 129 (305)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCC--C----------CCCCCcccCCCCccHHHHHHHHHHHHhc
Confidence 699999999999999999999999999999999975431 1 1124799999999999999999999999
Q ss_pred CcCccchhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhc-CCCCCccCC
Q psy12574 81 GERGRSLREKMNLHNNEAGRCRETAFIYAITSAAVTHTVARSCA-EGSIESCTC 133 (244)
Q Consensus 81 ~e~~~~~r~~m~lhN~~ag~~rEtAfv~ai~sagv~~~v~raC~-~G~~~~C~C 133 (244)
++..++++++|++|||++|+ ..|...+.+.|. ||.+++|.-
T Consensus 130 ~~~~~d~r~lmnlHNn~aGR------------~~v~~~~~~~CkCHGvSGSC~~ 171 (305)
T smart00097 130 RERGKDARALMNLHNNEAGR------------LAVKKTMKRECKCHGVSGSCTV 171 (305)
T ss_pred ccccccHHHHHHHhhhHHHH------------HHHHHHHHHhccccCccCCccc
Confidence 98878999999999999999 788888999999 999999874
No 6
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=99.95 E-value=6e-29 Score=226.72 Aligned_cols=109 Identities=51% Similarity=1.009 Sum_probs=82.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCceecCCCCCcchhhHHHHhhhcc
Q psy12574 1 CRETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWEWGGCSDNIGFGFKFSREFVDT 80 (244)
Q Consensus 1 ~REtAfv~AissAgv~~~varaCs~G~l~~C~Cd~~~~~~~~~~~~~~~~~~~~~~~w~WgGCsdnv~fG~~fsr~Fld~ 80 (244)
+||+||||||+||||+|+||+||++|.|..|+|+...... ...+.|+||||+|||.||++|+++|||+
T Consensus 66 trE~Afv~Ai~sAgv~~~itraCs~G~l~~C~C~~~~~~~------------~~~~~~~wggCsdni~~G~~~sr~Fld~ 133 (310)
T PF00110_consen 66 TRETAFVYAISSAGVAHSITRACSRGKLKSCGCDRNPRGS------------SSQNTWQWGGCSDNIKFGIKFSRRFLDA 133 (310)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHTTT-SS-----TTTTS------------EEETTEEE-S----HHHHHHHHHHHHHH
T ss_pred cccceeeEhhhcCchHHHHHHHhhcccCCcCCCccccccc------------ccccccccCCcccccccchHHHHHHHHh
Confidence 6999999999999999999999999999999999754321 1124599999999999999999999999
Q ss_pred CcCccchhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhc-CCCCCccCC
Q psy12574 81 GERGRSLREKMNLHNNEAGRCRETAFIYAITSAAVTHTVARSCA-EGSIESCTC 133 (244)
Q Consensus 81 ~e~~~~~r~~m~lhN~~ag~~rEtAfv~ai~sagv~~~v~raC~-~G~~~~C~C 133 (244)
++...+.+.+|++|||++|+ ..|...+...|. ||.+++|.-
T Consensus 134 ~~~~~~~~~~mn~HNn~aGR------------~~v~~~~~~~CkCHGvSGSC~~ 175 (310)
T PF00110_consen 134 REKGSDARSLMNLHNNEAGR------------KAVKKNMKKKCKCHGVSGSCTV 175 (310)
T ss_dssp H--SSSHHHHHHHHHHHHHH------------HHHHHT-EEEEEE-SGGG-TTS
T ss_pred hhhhhhhhhhhhhhhhhhhh------------hhhcccccceEccccccCCCcc
Confidence 99888999999999999999 778888999999 999999884
No 7
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=27.43 E-value=50 Score=25.83 Aligned_cols=16 Identities=38% Similarity=1.061 Sum_probs=11.9
Q ss_pred cccceeeccCCCcccce
Q psy12574 220 RQECKCHGMSGSCTVKT 236 (244)
Q Consensus 220 ~~~CkChG~SGSC~~kt 236 (244)
+-.|+ ||+=|||+++.
T Consensus 49 r~sCr-~giCGsCam~I 64 (110)
T PF13085_consen 49 RYSCR-SGICGSCAMRI 64 (110)
T ss_dssp --SSS-SSSSSTTEEEE
T ss_pred EecCC-CCCCCCCEEEE
Confidence 45666 89999999975
No 8
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=13.13 E-value=1.5e+02 Score=26.26 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=11.0
Q ss_pred cceeeccCCCcccce
Q psy12574 222 ECKCHGMSGSCTVKT 236 (244)
Q Consensus 222 ~CkChG~SGSC~~kt 236 (244)
.|+ +|+-|||+++.
T Consensus 57 ~C~-~giCGsC~v~I 70 (244)
T PRK12385 57 SCR-MAICGSCGMMV 70 (244)
T ss_pred CCC-CCcCCCCcceE
Confidence 454 79999999874
No 9
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=12.99 E-value=1.4e+02 Score=26.62 Aligned_cols=16 Identities=25% Similarity=0.885 Sum_probs=12.5
Q ss_pred cccceeeccCCCcccce
Q psy12574 220 RQECKCHGMSGSCTVKT 236 (244)
Q Consensus 220 ~~~CkChG~SGSC~~kt 236 (244)
+-.|+ ||+=|||+++.
T Consensus 55 r~sCr-~~iCGsCam~I 70 (250)
T PRK07570 55 DHDCR-EGICGMCGLVI 70 (250)
T ss_pred ecccc-CCcCCcceeEE
Confidence 45565 89999999874
No 10
>CHL00020 psbN photosystem II protein N
Probab=12.31 E-value=2.1e+02 Score=18.75 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy12574 3 ETAFIYAITSAAVTHTVA 20 (244)
Q Consensus 3 EtAfv~AissAgv~~~va 20 (244)
|+|++.+|.-+.++.+++
T Consensus 2 e~A~~~~i~i~~ll~~~T 19 (43)
T CHL00020 2 ETATLVAIFISGLLVSFT 19 (43)
T ss_pred CchhhHHHHHHHHHHHhh
Confidence 788899999888888775
Done!