Query psy12574
Match_columns 244
No_of_seqs 228 out of 687
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:50:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 100.0 3.1E-48 1.1E-52 352.1 9.4 124 97-244 57-180 (316)
2 4f0a_B Protein WNT-8, XWNT-8; 100.0 5.8E-33 2E-37 251.9 3.2 109 1-133 61-170 (316)
3 3tvj_I Protease inhibitor SGPI 29.7 14 0.00047 22.7 0.4 17 221-237 18-36 (38)
4 1hvw_A Omega-ACTX-HV1A, omega- 16.3 42 0.0014 18.7 0.6 9 229-237 16-24 (26)
5 1gl0_I Protease inhibitor LCMI 14.3 36 0.0012 20.4 -0.1 16 222-238 16-33 (35)
6 2jry_A R11.6, I-superfamily co 8.2 1.1E+02 0.0038 19.3 0.7 12 56-67 31-42 (46)
7 3hgf_A Rhoptry protein fragmen 6.2 1.7E+02 0.0058 21.3 0.9 15 166-180 57-71 (107)
8 1koz_A Voltage-dependent chann 6.1 1.6E+02 0.0055 17.6 0.6 9 58-66 4-12 (36)
9 1hgv_A PH75 inovirus major coa 6.0 1.7E+02 0.0058 18.0 0.7 11 6-16 15-25 (46)
10 3aub_A BPTI, bovine pancreatic 5.4 2.2E+02 0.0075 18.2 1.0 12 56-67 31-42 (58)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=100.00 E-value=3.1e-48 Score=352.13 Aligned_cols=124 Identities=50% Similarity=0.969 Sum_probs=115.7
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhcCCCCCccCCCCCCCCCCCCCCcccccccCCCCCccccCCCCchhhhHHhhhh
Q psy12574 97 EAGRCRETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWEWGGCSDNIGFGFKFSRE 176 (244)
Q Consensus 97 ~ag~~rEtAfv~ai~sagv~~~v~raC~~G~~~~C~C~~~~~~~~~~~~~~~~~~~~~~~~~~w~gC~dnv~~g~~~s~~ 176 (244)
+..++||+||||||++|||+|+|+++|+.|.+..|+||....+.+ ..++|+||||+|||.||++|++.
T Consensus 57 l~~g~REtAFv~AissAgv~~avtraCs~G~l~~C~Cd~~~~~~~------------~~~~w~WgGCsdnv~~G~~fsr~ 124 (316)
T 4f0a_B 57 LRSATRETSFVHAISSAGVMYTLTRNCSMGDFDNCGCDDSRNGRI------------GGRGWVWGGCSDNAEFGERISKL 124 (316)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCCTTTTSE------------EETTEEECSCCCCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC------------cccCceeCCccchhHHHHHHHHH
Confidence 456899999999999999999999999999999999987654321 24679999999999999999999
Q ss_pred hhccCcCCCchHHHHHhhhhhhchhhhhhHHHHHHHHHHHHhccccceeeccCCCcccceecccCCCC
Q psy12574 177 FVDTGERGRSLREKMNLHNNEAGRAHFNMVLNVSLLQHVMAEMRQECKCHGMSGSCTVKTCWMRLPNF 244 (244)
Q Consensus 177 f~d~~~~~~~~~~~m~~HNn~~Gr~~~~~~~~~~~~~~v~~~~~~~CkChG~SGSC~~ktCw~~lp~F 244 (244)
|+|++|++++++.+||||||+|||+| |.++|+++||||||||||++||||++||+|
T Consensus 125 F~D~~e~~~d~r~lmnlHNn~aGR~~------------v~~~m~~~CKCHGvSGSCt~KTCW~~lp~F 180 (316)
T 4f0a_B 125 FVDGLETGQDARALMNLHNNEAGRLA------------VKETMKRTCKCHGISGSCSIQTCWLQLAEF 180 (316)
T ss_dssp HHHHHCCSSSHHHHHHHHHHHHHHHH------------HHHTCEEEEEECSGGGCTTSEEEEEECCCH
T ss_pred HhccccccccHHHHHHhhchHHHHHH------------HHhcCeeeeecCCccccccceehcccCCCH
Confidence 99999998999999999999999999 999999999999999999999999999998
No 2
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=99.97 E-value=5.8e-33 Score=251.95 Aligned_cols=109 Identities=50% Similarity=0.880 Sum_probs=98.4
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCceecCCCCCcchhhHHHHhhhcc
Q psy12574 1 CRETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWEWGGCSDNIGFGFKFSREFVDT 80 (244)
Q Consensus 1 ~REtAfv~AissAgv~~~varaCs~G~l~~C~Cd~~~~~~~~~~~~~~~~~~~~~~~w~WgGCsdnv~fG~~fsr~Fld~ 80 (244)
+||+||||||+||||+|+||+|||+|.|..|+||...++. +..++|+||||||||.||++|+++|+|+
T Consensus 61 ~REtAFv~AissAgv~~avtraCs~G~l~~C~Cd~~~~~~------------~~~~~w~WgGCsdnv~~G~~fsr~F~D~ 128 (316)
T 4f0a_B 61 TRETSFVHAISSAGVMYTLTRNCSMGDFDNCGCDDSRNGR------------IGGRGWVWGGCSDNAEFGERISKLFVDG 128 (316)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCCTTTTS------------EEETTEEECSCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCC------------CcccCceeCCccchhHHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999754321 1136799999999999999999999999
Q ss_pred CcCccchhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhc-CCCCCccCC
Q psy12574 81 GERGRSLREKMNLHNNEAGRCRETAFIYAITSAAVTHTVARSCA-EGSIESCTC 133 (244)
Q Consensus 81 ~e~~~~~r~~m~lhN~~ag~~rEtAfv~ai~sagv~~~v~raC~-~G~~~~C~C 133 (244)
+|++++++.+|++|||++|+ ..|...+...|+ ||.+++|.-
T Consensus 129 ~e~~~d~r~lmnlHNn~aGR------------~~v~~~m~~~CKCHGvSGSCt~ 170 (316)
T 4f0a_B 129 LETGQDARALMNLHNNEAGR------------LAVKETMKRTCKCHGISGSCSI 170 (316)
T ss_dssp HCCSSSHHHHHHHHHHHHHH------------HHHHHTCEEEEEECSGGGCTTS
T ss_pred ccccccHHHHHHhhchHHHH------------HHHHhcCeeeeecCCccccccc
Confidence 99989999999999999999 678888899999 999999874
No 3
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=29.72 E-value=14 Score=22.72 Aligned_cols=17 Identities=41% Similarity=0.980 Sum_probs=14.2
Q ss_pred ccceee--ccCCCccccee
Q psy12574 221 QECKCH--GMSGSCTVKTC 237 (244)
Q Consensus 221 ~~CkCh--G~SGSC~~ktC 237 (244)
-.|+|- |.+.+|+.|.|
T Consensus 18 NtC~C~~dG~~a~CT~k~C 36 (38)
T 3tvj_I 18 NTCRCGSDGKSAVCTKLWC 36 (38)
T ss_dssp EEEEECTTSSCEEEECCEE
T ss_pred ceeECCCCCceeEeecccC
Confidence 368886 88889999988
No 4
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=16.29 E-value=42 Score=18.69 Aligned_cols=9 Identities=56% Similarity=0.899 Sum_probs=7.5
Q ss_pred CCCccccee
Q psy12574 229 SGSCTVKTC 237 (244)
Q Consensus 229 SGSC~~ktC 237 (244)
||||+-+.|
T Consensus 16 SGsCt~~~c 24 (26)
T 1hvw_A 16 SQSCTGGRC 24 (26)
T ss_dssp SCCEETTEE
T ss_pred ccccccccc
Confidence 889988777
No 5
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1
Probab=14.27 E-value=36 Score=20.45 Aligned_cols=16 Identities=38% Similarity=1.028 Sum_probs=11.1
Q ss_pred ccee--eccCCCcccceec
Q psy12574 222 ECKC--HGMSGSCTVKTCW 238 (244)
Q Consensus 222 ~CkC--hG~SGSC~~ktCw 238 (244)
.|.| +|+ ..|++|.|-
T Consensus 16 ~C~C~~~G~-~~CTlk~C~ 33 (35)
T 1gl0_I 16 TCTCTPTGV-WGCTLMGCQ 33 (35)
T ss_dssp EEEECTTSC-EEEECCCCC
T ss_pred ccCCCCCCe-EEEEeeccc
Confidence 4666 565 788888773
No 6
>2jry_A R11.6, I-superfamily conotoxin R11A; IOTA-conotoxin; HET: HYP DPN; NMR {Conus radiatus} PDB: 2p4l_A* 2jtu_A*
Probab=8.19 E-value=1.1e+02 Score=19.33 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=9.9
Q ss_pred CCceecCCCCCc
Q psy12574 56 RDWEWGGCSDNI 67 (244)
Q Consensus 56 ~~w~WgGCsdnv 67 (244)
..|.|.|||-+.
T Consensus 31 Ts~i~pgcst~~ 42 (46)
T 2jry_A 31 TNWILPGCSTSS 42 (46)
T ss_dssp CSSSSCSCCCCT
T ss_pred eeEEecCCcccc
Confidence 579999999664
No 7
>3hgf_A Rhoptry protein fragment; helix-turn-helix, nucleotide binding protein; 4.00A {Plasmodium yoelii yoelii}
Probab=6.17 E-value=1.7e+02 Score=21.30 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=13.7
Q ss_pred chhhhHHhhhhhhcc
Q psy12574 166 NIGFGFKFSREFVDT 180 (244)
Q Consensus 166 nv~~g~~~s~~f~d~ 180 (244)
|+.||..+.+.||+.
T Consensus 57 NlSYg~SL~~LFL~q 71 (107)
T 3hgf_A 57 NMSYGKSLNKLFLEK 71 (107)
T ss_dssp HHHHTHHHHHHHHHH
T ss_pred chHHHHhHHHHHHHH
Confidence 789999999999985
No 8
>1koz_A Voltage-dependent channel inhibitor; toxin, cystine knot; NMR {Synthetic} SCOP: g.3.6.2
Probab=6.08 E-value=1.6e+02 Score=17.61 Aligned_cols=9 Identities=44% Similarity=1.084 Sum_probs=5.9
Q ss_pred ceecCCCCC
Q psy12574 58 WEWGGCSDN 66 (244)
Q Consensus 58 w~WgGCsdn 66 (244)
|-||||+.|
T Consensus 4 ~~~g~C~~~ 12 (36)
T 1koz_A 4 RFWGKCSQT 12 (36)
T ss_dssp CSSCBCCSS
T ss_pred ccccCCCCc
Confidence 557777654
No 9
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=5.99 E-value=1.7e+02 Score=18.00 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q psy12574 6 FIYAITSAAVT 16 (244)
Q Consensus 6 fv~AissAgv~ 16 (244)
|+.+|++|||-
T Consensus 15 yi~~iaaagvg 25 (46)
T 1hgv_A 15 YIQAIAAAGVG 25 (46)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHccch
Confidence 56788888874
No 10
>3aub_A BPTI, bovine pancreatic trypsin inhibitor; serine protease inhibitor, hydrolase inhibitor; 1.00A {Bos taurus} PDB: 3aui_A 3auh_A 3ci7_A
Probab=5.37 E-value=2.2e+02 Score=18.15 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=9.0
Q ss_pred CCceecCCCCCc
Q psy12574 56 RDWEWGGCSDNI 67 (244)
Q Consensus 56 ~~w~WgGCsdnv 67 (244)
+.|.|+||+.|-
T Consensus 31 ~~F~ygGC~gN~ 42 (58)
T 3aub_A 31 QAFVYGGVRAKR 42 (58)
T ss_dssp EEEEECSSSCCS
T ss_pred eEEecCCcCCCC
Confidence 358899998663
Done!