RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12574
         (244 letters)



>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
           frizzled, fatty acylation, glycosylation, signaling
           protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
           laevis}
          Length = 316

 Score =  116 bits (291), Expect = 2e-31
 Identities = 62/145 (42%), Positives = 84/145 (57%), Gaps = 24/145 (16%)

Query: 100 RCRETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWE 159
             RET+F++AI+SA V +T+ R+C+ G  ++C CD S   +             G R W 
Sbjct: 60  ATRETSFVHAISSAGVMYTLTRNCSMGDFDNCGCDDSRNGR------------IGGRGWV 107

Query: 160 WGGCSDNIGFGFKFSREFVDTGERGRSLREKMNLHNNEAGRAHFNMVLNVSLLQHVMAEM 219
           WGGCSDN  FG + S+ FVD  E G+  R  MNLHNNEAGR              V   M
Sbjct: 108 WGGCSDNAEFGERISKLFVDGLETGQDARALMNLHNNEAGR------------LAVKETM 155

Query: 220 RQECKCHGMSGSCTVKTCWMRLPNF 244
           ++ CKCHG+SGSC+++TCW++L  F
Sbjct: 156 KRTCKCHGISGSCSIQTCWLQLAEF 180



 Score = 89.3 bits (220), Expect = 3e-21
 Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 12/100 (12%)

Query: 1   CRETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQRPTKTTLNNVAGVRDWEW 60
            RET+F++AI+SA V +T+ R+C+ G  ++C CD S   +             G R W W
Sbjct: 61  TRETSFVHAISSAGVMYTLTRNCSMGDFDNCGCDDSRNGR------------IGGRGWVW 108

Query: 61  GGCSDNIGFGFKFSREFVDTGERGRSLREKMNLHNNEAGR 100
           GGCSDN  FG + S+ FVD  E G+  R  MNLHNNEAGR
Sbjct: 109 GGCSDNAEFGERISKLFVDGLETGQDARALMNLHNNEAGR 148


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 39/227 (17%), Positives = 63/227 (27%), Gaps = 71/227 (31%)

Query: 38   QSKGQRPTKTTLNNVAGVRD-WEWGGCSDNIGFGF---KFSRE------FVDTGERGRSL 87
            Q +G              +D W          +GF                  GE+G+ +
Sbjct: 1627 QEQGM--GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684

Query: 88   RE---KMNLHNNEAGRCR-ETAFIYAITSAAVTHTVARSCAEGSIESCTCDYSHQSKGQ- 142
            RE    M       G+ + E  F                  E +  S +  +  + KG  
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIF-----------------KEINEHSTSYTFRSE-KGLL 1726

Query: 143  RPTKTT-----LNNVAGVRDW-EWGGCSDNIGF-G---------------FKFSREFVDT 180
              T+ T     L   A   D    G    +  F G                         
Sbjct: 1727 SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE----SL 1782

Query: 181  GE----RGRSLREKMNLHNNEAGRAHFNMV-LNVSLLQHVMAEMRQE 222
             E    RG +++  +    +E GR+++ M+ +N      V A   QE
Sbjct: 1783 VEVVFYRGMTMQVAV--PRDELGRSNYGMIAINPGR---VAASFSQE 1824


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.7 bits (71), Expect = 0.27
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 28/91 (30%)

Query: 164 SDNIGFGFKFSREFVDTGERGRSLREKM------NLHNNEAGRAHFNMVL---NVSLLQH 214
              I + F  S   + T +R  S+  +M       L+N+       N V    NVS LQ 
Sbjct: 86  VLRINYKFLMSP--IKTEQRQPSMMTRMYIEQRDRLYND-------NQVFAKYNVSRLQP 136

Query: 215 VMA------EMRQECK--CHGMSGSCTVKTC 237
            +       E+R        G+ GS   KT 
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSG--KTW 165


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.131    0.421 

Gapped
Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,617,890
Number of extensions: 202644
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 5
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)