RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12574
         (244 letters)



>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 85

 Score = 24.1 bits (52), Expect = 6.7
 Identities = 6/45 (13%), Positives = 15/45 (33%)

Query: 85  RSLREKMNLHNNEAGRCRETAFIYAITSAAVTHTVARSCAEGSIE 129
           + ++E     N       + A +  I+  + +  +      G I 
Sbjct: 8   KKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYIT 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.131    0.421 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 895,578
Number of extensions: 38945
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 7
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)