BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12576
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 213 bits (541), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 101/130 (77%), Positives = 118/130 (90%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLLS+CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
M+FG+IL P
Sbjct: 388 MAFGSILEGP 397
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 210 bits (535), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
M+FG IL P
Sbjct: 388 MAFGCILEGP 397
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 210 bits (535), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 143 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 202
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 203 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 262
Query: 121 MSFGAILVRP 130
M+FG IL P
Sbjct: 263 MAFGCILEGP 272
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 88 SERHFIMQVVCEATQCPDTRVRVAALQNL 116
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 210 bits (535), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
M+FG IL P
Sbjct: 388 MAFGCILEGP 397
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 210 bits (534), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
M+FG IL P
Sbjct: 388 MAFGCILEGP 397
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 210 bits (534), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
M+FG IL P
Sbjct: 388 MAFGCILEGP 397
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 210 bits (534), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
M+FG IL P
Sbjct: 388 MAFGCILEGP 397
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/129 (75%), Positives = 114/129 (88%)
Query: 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQ 61
KSDIDEVALQGIEFWSNV DEE DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILTQ
Sbjct: 275 KSDIDEVALQGIEFWSNVCDEEXDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 334
Query: 62 KLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALM 121
LTKQ+E DD+DDWNPCKAAGVCL LLS+CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 335 TLTKQDENDDDDDWNPCKAAGVCLXLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVX 394
Query: 122 SFGAILVRP 130
+FG+IL P
Sbjct: 395 AFGSILEGP 403
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
SER+FI +VVCEATQ PDT++RVAALQ L
Sbjct: 219 SERHFIXQVVCEATQCPDTRVRVAALQNL 247
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKS D+VA +EFWS + +EE+D+A E A F + P ++ F A +++ +VP L
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIAYE---LAQFPQSPLQSYNF-ALSSIKDVVPNLL 330
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
LT+Q E ++DDWN +AG CL L + C ++ +L FV NI +WR+R+AA+
Sbjct: 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390
Query: 121 MSFGAILVRP 130
M+FG+I+ P
Sbjct: 391 MAFGSIMDGP 400
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
ERN++M+VVCEATQ+ D +++ AA CL
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFGCL 248
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKS D+VA +EFWS + +EE+D+A E A F + P ++ F A +++ +VP L
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIAYE---LAQFPQSPLQSYNF-ALSSIKDVVPNLL 330
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
LT+Q E ++DDWN +AG CL L + C ++ +L FV NI +WR+R+AA+
Sbjct: 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390
Query: 121 MSFGAILVRP 130
M+FG+I+ P
Sbjct: 391 MAFGSIMDGP 400
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
ERN++M+VVCEATQ+ D +++ AA CL
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFGCL 248
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQK 62
SDID + L+G D E D I DSE RP SR A+ + +
Sbjct: 311 SDIDIILLKG--------DVEEDETIPDSEQDI--RPRFHRSRTVAQQHDEDGIEEEDDD 360
Query: 63 LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMS 122
+ ++ D DWN K + L +L++ ++++PHILP + + H +W +++ ++
Sbjct: 361 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 420
Query: 123 FGAI 126
GAI
Sbjct: 421 LGAI 424
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQK 62
SDID + L+G D E D I DSE RP SR A+ + +
Sbjct: 311 SDIDIILLKG--------DVEEDETIPDSEQDI--RPRFHRSRTVAQQHDEDGIEEEDDD 360
Query: 63 LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMS 122
+ ++ D DWN K + L +L++ ++++PHILP + + H +W +++ ++
Sbjct: 361 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 420
Query: 123 FGAI 126
GAI
Sbjct: 421 LGAI 424
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 70 DDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAI 126
D DWN K + L +L++ ++++PHILP + + H +W +++ ++ GAI
Sbjct: 343 DTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAI 399
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 70 DDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAI 126
D DWN K + L +L++ ++++PHILP + + H +W +++ ++ GAI
Sbjct: 330 DTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAI 386
>pdb|2B4K|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B9V|A Chain A, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|B Chain B, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|C Chain C, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|D Chain D, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|E Chain E, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|F Chain F, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|G Chain G, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|H Chain H, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|I Chain I, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|J Chain J, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|K Chain K, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|L Chain L, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|M Chain M, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|N Chain N, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|O Chain O, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|P Chain P, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
Length = 652
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 28 IEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWN 76
I D++ AD+ T++ K A L+P++ QKL +++L E+D N
Sbjct: 595 IFDAKPADY-TVATQSIHHGGKEATSILLPVVKQKLGPEQKLISEEDLN 642
>pdb|1NX9|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
Length = 652
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 28 IEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWN 76
I D++ AD+ T++ K A L+P++ QKL +++L E+D N
Sbjct: 595 IFDAKPADY-TVATQSIHHGGKEATSILLPVVKQKLGPEQKLISEEDLN 642
>pdb|1RYY|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|E Chain E, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|F Chain F, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|G Chain G, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|H Chain H, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
Length = 652
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 28 IEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWN 76
I D++ AD+ T++ K A L+P++ QKL +++L E+D N
Sbjct: 595 IFDAKPADY-TVATQSIHHGGKEATSILLPVVKQKLGPEQKLISEEDLN 642
>pdb|3S44|A Chain A, Crystal Structure Of Pasteurella Multocida
Sialyltransferase M144d Mutant With Cmp Bound
Length = 399
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 5 IDEVALQGIEFWSNVSDEEVDLAIEDSE--AADFGRPPTRTSRFYAKGALQYLVPILTQ 61
+D V++Q + + + SDE VDL E+++ +A+ + + S + G +++ P + +
Sbjct: 104 LDRVSIQQLNLYDDGSDEYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIAR 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,610,075
Number of Sequences: 62578
Number of extensions: 171056
Number of successful extensions: 376
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 34
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)