BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12576
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P70168|IMB1_MOUSE Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2
Length = 876
Score = 213 bits (541), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 101/130 (77%), Positives = 118/130 (90%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLLS+CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
M+FG+IL P
Sbjct: 388 MAFGSILEGP 397
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241
>sp|P52296|IMB1_RAT Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1
Length = 875
Score = 212 bits (540), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 101/130 (77%), Positives = 118/130 (90%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 267 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 326
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLLS+CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 327 QTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 386
Query: 121 MSFGAILVRP 130
M+FG+IL P
Sbjct: 387 MAFGSILEGP 396
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 212 SERHFIMQVVCEATQCPDTRVRVAALQNL 240
>sp|Q14974|IMB1_HUMAN Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2
Length = 876
Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
M+FG IL P
Sbjct: 388 MAFGCILEGP 397
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241
>sp|O18388|IMB_DROME Importin subunit beta OS=Drosophila melanogaster GN=Fs(2)Ket PE=2
SV=2
Length = 884
Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 105/127 (82%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSD D VALQGIEFWSNV DEE+DLAIE EA D GR P R S+ YA+GALQ+L P+L
Sbjct: 274 MKSDNDAVALQGIEFWSNVCDEEIDLAIESQEATDQGRAPQRVSKHYARGALQFLTPVLV 333
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
+KLTKQ+E DDED W+P KAA VCLM+L++CCE+++VPH+LPF+ NIE +WR RDAA+
Sbjct: 334 EKLTKQDECDDEDTWSPAKAASVCLMVLATCCEDEIVPHVLPFIKENIESPNWRFRDAAV 393
Query: 121 MSFGAIL 127
M+FG++L
Sbjct: 394 MTFGSVL 400
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 25/28 (89%)
Query: 138 ERNFIMEVVCEATQSPDTQIRVAALQCL 165
ERNFIMEVVCEATQ D+QI VAALQCL
Sbjct: 220 ERNFIMEVVCEATQCQDSQICVAALQCL 247
>sp|O13864|IMB1_SCHPO Importin subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=kap95 PE=3 SV=1
Length = 863
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 81/131 (61%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
M + ++VALQ +EFWS V +EE+++ +E EA D P R + +A+ A ++P+L
Sbjct: 268 MYNTNEQVALQAVEFWSTVCEEEIEVNLEIQEAQDLNEVPARQNHGFARAAAADILPVLL 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
+ L Q+E DEDDWN AA CL L + + +V +L FV NI++ DW R+AA+
Sbjct: 328 KLLCNQDEDADEDDWNISMAAATCLQLFAQVVGDLIVNPVLAFVEQNIQNPDWHQREAAV 387
Query: 121 MSFGAILVRPS 131
M+FG++L P+
Sbjct: 388 MAFGSVLEGPN 398
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 138 ERNFIMEVVCEATQSPDTQIRVAALQCL 165
ERN+IM+VVCEATQSP+ I+ AA CL
Sbjct: 214 ERNYIMQVVCEATQSPEASIQTAAFGCL 241
>sp|Q06142|IMB1_YEAST Importin subunit beta-1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=KAP95 PE=1 SV=1
Length = 861
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKS D+VA +EFWS + +EE+D+A E A F + P ++ F A +++ +VP L
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIAYE---LAQFPQSPLQSYNF-ALSSIKDVVPNLL 330
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
LT+Q E ++DDWN +AG CL L + C ++ +L FV NI +WR+R+AA+
Sbjct: 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390
Query: 121 MSFGAILVRP 130
M+FG+I+ P
Sbjct: 391 MAFGSIMDGP 400
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
ERN++M+VVCEATQ+ D +++ AA CL
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFGCL 248
>sp|Q8BFY9|TNPO1_MOUSE Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2
Length = 898
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQK 62
SDID + L+G D E D I DSE RP SR A+ + +
Sbjct: 319 SDIDIILLKG--------DVEEDETIPDSEQDI--RPRFHRSRTVAQQHEEDGIEEEDDD 368
Query: 63 LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMS 122
+ ++ D DWN K + L +L++ ++++PHILP + + H +W +++ ++
Sbjct: 369 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 428
Query: 123 FGAI 126
GAI
Sbjct: 429 LGAI 432
>sp|Q92973|TNPO1_HUMAN Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2
Length = 898
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQK 62
SDID + L+G D E D I DSE RP SR A+ + +
Sbjct: 319 SDIDIILLKG--------DVEEDETIPDSEQDI--RPRFHRSRTVAQQHDEDGIEEEDDD 368
Query: 63 LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMS 122
+ ++ D DWN K + L +L++ ++++PHILP + + H +W +++ ++
Sbjct: 369 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 428
Query: 123 FGAI 126
GAI
Sbjct: 429 LGAI 432
>sp|Q3SYU7|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2
Length = 898
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQK 62
SDID + L+G D E D I DSE RP SR A+ + +
Sbjct: 319 SDIDIILLKG--------DVEEDETIPDSEQDI--RPRFHRSRTVAQQHDEDGIEEEEDD 368
Query: 63 LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMS 122
+ ++ D DWN K + L +L++ ++++PHILP + + H +W +++ ++
Sbjct: 369 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 428
Query: 123 FGAI 126
GAI
Sbjct: 429 LGAI 432
>sp|B8ARW2|TNPO1_ORYSI Transportin-1 OS=Oryza sativa subsp. indica GN=OsI_18044 PE=2 SV=1
Length = 890
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 61/168 (36%), Gaps = 62/168 (36%)
Query: 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQ 61
K DEVAL+ EFWS D + PP F L L+P L
Sbjct: 270 KDSDDEVALEACEFWSAYCDVSM--------------PPEGLREF-----LPRLIPTLLS 310
Query: 62 KLT------------KQEELDDEDD----------------------------WNPCKAA 81
++ ++E D D WN K +
Sbjct: 311 NMSYSDDDESLADAEEEESFPDRDQDLKPRFHASRLHGSETGEDDDDDDAVNVWNLRKCS 370
Query: 82 GVCLMLLSSCCEEDMVPHILPFVNANIEHAD---WRHRDAALMSFGAI 126
L +LS+ +D++P ++P + N+ D W+ R+AA++S GAI
Sbjct: 371 AAGLDVLSNVFGDDILPTLMPLIQQNLARTDDDAWKEREAAVLSIGAI 418
>sp|B9FDR3|TNPO1_ORYSJ Transportin-1 OS=Oryza sativa subsp. japonica GN=TRN1 PE=3 SV=2
Length = 891
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHAD---WRHRDAALMSFGAI 126
WN K + L +LS+ +D++P ++P + N+ D W+ R+AA++S GAI
Sbjct: 365 WNLRKCSAAGLDVLSNVFGDDILPTLMPLIQQNLARTDDDAWKEREAAVLSIGAI 419
>sp|Q8H0U4|TNPO1_ARATH Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1
Length = 891
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 61/163 (37%)
Query: 6 DEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTK 65
+EV+L+ EFWS D ++ PP F L L+P+L + +
Sbjct: 277 EEVSLEACEFWSAYCDAQL--------------PPENLKEF-----LPRLIPVLLENMAY 317
Query: 66 QEE----LDDEDD-----------------------------------WNPCKAAGVCLM 86
++ LD E+D WN K + +
Sbjct: 318 ADDDESLLDAEEDESQPDRDQDLKPRFHTSRLHGSEDFDDDDDDSFNVWNLRKCSAAAID 377
Query: 87 LLSSCCEEDMVPHILPFVNANIEHAD---WRHRDAALMSFGAI 126
+LS+ ++++P ++P + N+ + W+ R+AA+++ GAI
Sbjct: 378 VLSNVFGDEILPALMPLIQKNLSASGDEAWKQREAAVLALGAI 420
>sp|O14089|IMB2_SCHPO Importin subunit beta-2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=kap104 PE=3 SV=1
Length = 910
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAI 126
DWN K + L +LSS ++ ++ ILP + ++ DW+ ++A +++ GAI
Sbjct: 389 DWNLRKCSAAALDVLSSFWKQRLLEIILPHLKQSLTSEDWKVQEAGVLAVGAI 441
>sp|Q9YDD7|RL14E_AERPE 50S ribosomal protein L14e OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpl14e PE=3 SV=2
Length = 100
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 2 KSDIDEVAL--QGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRF 46
+ +ID + + + ++ SDEEV A+E++ ADF R P R +R
Sbjct: 49 RVNIDHIEILDKKVDIQKGASDEEVLKALEEAGLADFMREPVRIARI 95
>sp|P52297|IMB_XENLA Importin subunit beta (Fragments) OS=Xenopus laevis GN=kpnb1 PE=1
SV=2
Length = 260
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 25 DLAIEDSEAADFGRPPTRTSRFYAK 49
DLAIE SEAA+ G PP T +FY K
Sbjct: 108 DLAIEASEAAEQGXPPEXT-KFYEK 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,965,600
Number of Sequences: 539616
Number of extensions: 2235965
Number of successful extensions: 5377
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5342
Number of HSP's gapped (non-prelim): 35
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)