Query psy12576
Match_columns 165
No_of_seqs 151 out of 658
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 22:52:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1241|consensus 100.0 2.9E-42 6.2E-47 307.8 15.1 162 1-164 268-429 (859)
2 COG5215 KAP95 Karyopherin (imp 100.0 1.2E-33 2.6E-38 247.5 13.4 161 1-165 272-432 (858)
3 KOG2171|consensus 100.0 2.5E-28 5.4E-33 225.9 12.5 142 3-165 260-413 (1075)
4 KOG2023|consensus 100.0 2.2E-28 4.8E-33 217.0 8.9 141 2-162 266-455 (885)
5 PF12755 Vac14_Fab1_bd: Vacuol 99.1 4E-10 8.6E-15 79.8 7.6 86 76-162 1-89 (97)
6 PF13513 HEAT_EZ: HEAT-like re 99.0 7E-10 1.5E-14 69.8 4.7 52 113-165 1-52 (55)
7 PF12755 Vac14_Fab1_bd: Vacuol 98.9 1.5E-09 3.3E-14 76.8 4.2 50 115-165 2-51 (97)
8 PF12348 CLASP_N: CLASP N term 98.9 2.7E-08 5.8E-13 79.0 11.5 132 4-165 65-201 (228)
9 KOG2171|consensus 98.8 2.5E-08 5.4E-13 94.0 8.0 108 51-165 345-456 (1075)
10 cd00020 ARM Armadillo/beta-cat 98.5 3.1E-07 6.7E-12 64.5 6.6 105 54-165 7-115 (120)
11 PF13646 HEAT_2: HEAT repeats; 98.3 4.8E-06 1E-10 56.2 8.1 86 56-165 1-87 (88)
12 PF08506 Cse1: Cse1; InterPro 98.2 4.8E-06 1E-10 71.8 7.8 110 4-130 154-286 (370)
13 KOG1241|consensus 98.2 5.7E-06 1.2E-10 75.9 8.4 110 50-165 125-241 (859)
14 PF02985 HEAT: HEAT repeat; I 98.1 5.6E-06 1.2E-10 46.3 3.5 31 100-130 1-31 (31)
15 cd00020 ARM Armadillo/beta-cat 98.0 7.9E-06 1.7E-10 57.2 4.6 65 100-165 8-73 (120)
16 PF02985 HEAT: HEAT repeat; I 98.0 4.6E-06 9.9E-11 46.7 2.1 24 142-165 1-24 (31)
17 KOG1242|consensus 98.0 3.1E-05 6.8E-10 69.5 8.4 104 54-165 216-319 (569)
18 PF13646 HEAT_2: HEAT repeats; 98.0 1.7E-05 3.8E-10 53.4 5.3 53 102-165 2-55 (88)
19 PF12717 Cnd1: non-SMC mitotic 97.9 8.5E-05 1.8E-09 57.5 7.9 84 76-165 3-87 (178)
20 PF01602 Adaptin_N: Adaptin N 97.8 7.5E-05 1.6E-09 65.7 7.4 79 82-165 97-176 (526)
21 PRK09687 putative lyase; Provi 97.8 0.00016 3.5E-09 60.0 8.7 65 55-126 91-155 (280)
22 KOG2023|consensus 97.5 0.00016 3.5E-09 66.1 5.8 107 51-164 390-499 (885)
23 PRK09687 putative lyase; Provi 97.5 0.0006 1.3E-08 56.6 8.5 76 74-165 141-216 (280)
24 PF13513 HEAT_EZ: HEAT-like re 97.4 7.2E-05 1.6E-09 46.6 1.7 52 75-126 1-55 (55)
25 PF01602 Adaptin_N: Adaptin N 97.4 0.0034 7.3E-08 55.2 12.2 103 52-164 112-215 (526)
26 PRK13800 putative oxidoreducta 97.3 0.0023 5.1E-08 60.9 11.5 75 74-165 820-894 (897)
27 PRK13800 putative oxidoreducta 97.3 0.0023 4.9E-08 60.9 10.9 46 106-165 721-766 (897)
28 KOG1991|consensus 96.9 0.0054 1.2E-07 58.2 9.2 107 57-163 351-484 (1010)
29 KOG0212|consensus 96.9 0.00097 2.1E-08 60.0 4.2 88 77-165 16-108 (675)
30 KOG0915|consensus 96.9 0.0029 6.3E-08 62.3 7.4 56 107-162 1047-1102(1702)
31 KOG0166|consensus 96.9 0.011 2.3E-07 53.1 10.1 114 44-165 186-303 (514)
32 KOG2956|consensus 96.8 0.01 2.2E-07 52.5 9.7 87 75-165 386-472 (516)
33 PF12348 CLASP_N: CLASP N term 96.8 0.0031 6.7E-08 49.9 6.1 92 73-165 19-118 (228)
34 PTZ00429 beta-adaptin; Provisi 96.8 0.01 2.2E-07 55.7 10.2 80 83-165 124-203 (746)
35 KOG0213|consensus 96.7 0.0053 1.1E-07 57.2 7.1 84 76-165 491-577 (1172)
36 KOG1242|consensus 96.6 0.0098 2.1E-07 53.8 8.2 97 53-160 253-352 (569)
37 PTZ00429 beta-adaptin; Provisi 96.6 0.012 2.7E-07 55.1 8.8 83 75-165 82-164 (746)
38 PF12460 MMS19_C: RNAPII trans 96.4 0.0079 1.7E-07 52.4 6.1 70 96-165 320-389 (415)
39 PF12765 Cohesin_HEAT: HEAT re 96.4 0.0076 1.7E-07 36.0 4.0 41 122-165 2-42 (42)
40 COG5096 Vesicle coat complex, 96.3 0.023 5E-07 53.2 8.8 75 85-164 113-189 (757)
41 COG5215 KAP95 Karyopherin (imp 96.3 0.021 4.5E-07 52.1 8.2 83 83-165 153-245 (858)
42 PF10508 Proteasom_PSMB: Prote 96.3 0.021 4.5E-07 51.1 8.3 102 57-165 41-143 (503)
43 PF10508 Proteasom_PSMB: Prote 96.1 0.1 2.2E-06 46.7 11.7 141 2-165 212-361 (503)
44 KOG1820|consensus 95.9 0.13 2.9E-06 48.7 11.9 102 54-165 336-438 (815)
45 COG5181 HSH155 U2 snRNP splice 95.5 0.019 4.1E-07 52.7 4.6 86 76-165 296-382 (975)
46 KOG1240|consensus 95.4 0.07 1.5E-06 52.0 7.9 116 46-163 592-718 (1431)
47 KOG0211|consensus 95.3 0.21 4.6E-06 47.0 11.0 85 75-162 532-617 (759)
48 KOG1967|consensus 95.3 0.11 2.3E-06 49.6 8.7 110 48-164 903-1018(1030)
49 KOG0213|consensus 95.2 0.066 1.4E-06 50.2 6.9 125 2-164 893-1018(1172)
50 KOG4413|consensus 94.9 0.24 5.3E-06 42.7 9.3 118 47-164 25-151 (524)
51 PF05004 IFRD: Interferon-rela 94.9 0.5 1.1E-05 39.8 11.2 54 112-165 199-252 (309)
52 KOG2259|consensus 94.9 0.32 6.9E-06 45.1 10.4 81 76-163 388-468 (823)
53 KOG0166|consensus 94.8 0.073 1.6E-06 47.8 6.2 105 54-165 279-388 (514)
54 KOG1943|consensus 94.8 0.14 3E-06 49.4 8.2 81 78-164 358-451 (1133)
55 KOG0212|consensus 94.8 0.039 8.5E-07 50.0 4.3 86 75-161 57-145 (675)
56 KOG2081|consensus 94.7 0.81 1.8E-05 41.5 12.4 142 3-162 302-449 (559)
57 cd08050 TAF6 TATA Binding Prot 94.7 0.13 2.9E-06 43.9 7.3 81 47-127 251-339 (343)
58 KOG1967|consensus 94.7 0.24 5.2E-06 47.3 9.2 110 48-165 861-977 (1030)
59 PF12460 MMS19_C: RNAPII trans 94.6 0.33 7.2E-06 42.3 9.6 95 47-149 316-414 (415)
60 KOG1824|consensus 94.6 0.71 1.5E-05 44.5 12.0 94 54-154 212-312 (1233)
61 COG5181 HSH155 U2 snRNP splice 94.5 0.13 2.9E-06 47.4 7.1 121 2-163 698-822 (975)
62 PLN03200 cellulose synthase-in 94.5 0.21 4.5E-06 51.6 9.0 104 54-165 446-554 (2102)
63 TIGR02270 conserved hypothetic 94.4 0.27 5.8E-06 43.1 8.5 52 103-165 151-202 (410)
64 KOG1248|consensus 94.0 1.1 2.3E-05 44.0 12.2 107 50-163 734-849 (1176)
65 KOG1248|consensus 94.0 1.5 3.3E-05 43.0 13.2 81 83-163 807-891 (1176)
66 PF10274 ParcG: Parkin co-regu 93.8 0.51 1.1E-05 37.1 8.2 87 53-147 37-130 (183)
67 PF12717 Cnd1: non-SMC mitotic 93.8 1.6 3.4E-05 33.5 11.0 70 53-129 24-93 (178)
68 COG1413 FOG: HEAT repeat [Ener 93.8 0.3 6.5E-06 40.7 7.4 86 55-165 44-130 (335)
69 KOG0211|consensus 93.7 0.35 7.6E-06 45.6 8.4 88 74-164 570-658 (759)
70 PF08389 Xpo1: Exportin 1-like 93.5 0.3 6.6E-06 35.3 6.3 65 97-165 80-148 (148)
71 KOG1517|consensus 93.5 0.24 5.2E-06 48.1 6.8 86 80-165 576-666 (1387)
72 TIGR02270 conserved hypothetic 93.1 0.23 4.9E-06 43.6 5.8 57 97-165 115-171 (410)
73 COG1413 FOG: HEAT repeat [Ener 93.0 0.29 6.2E-06 40.8 6.2 59 98-165 179-237 (335)
74 PLN03200 cellulose synthase-in 93.0 0.85 1.8E-05 47.4 10.3 105 53-165 650-759 (2102)
75 PF05004 IFRD: Interferon-rela 93.0 1.6 3.5E-05 36.8 10.6 114 44-164 76-209 (309)
76 COG5096 Vesicle coat complex, 92.9 0.3 6.5E-06 45.9 6.5 99 52-165 53-151 (757)
77 PF14668 RICTOR_V: Rapamycin-i 92.8 0.14 3E-06 34.3 3.2 50 115-165 3-53 (73)
78 KOG1240|consensus 92.7 0.59 1.3E-05 46.0 8.3 87 76-165 593-680 (1431)
79 KOG1992|consensus 92.7 1.1 2.3E-05 42.7 9.7 88 75-162 376-481 (960)
80 KOG2933|consensus 92.5 0.3 6.5E-06 41.4 5.4 93 72-165 99-194 (334)
81 PF10274 ParcG: Parkin co-regu 92.5 0.37 8E-06 37.9 5.6 68 97-165 36-104 (183)
82 PF08167 RIX1: rRNA processing 92.4 0.44 9.5E-06 36.4 6.0 71 95-165 21-92 (165)
83 PF08713 DNA_alkylation: DNA a 92.4 0.4 8.6E-06 37.3 5.8 60 98-164 119-178 (213)
84 KOG4653|consensus 92.1 2.4 5.1E-05 40.6 11.2 158 2-165 778-959 (982)
85 PF07571 DUF1546: Protein of u 92.0 0.57 1.2E-05 32.5 5.6 56 72-127 17-77 (92)
86 smart00638 LPD_N Lipoprotein N 91.7 0.32 7E-06 43.8 5.2 74 85-165 467-540 (574)
87 PF10521 DUF2454: Protein of u 91.6 0.42 9E-06 39.6 5.4 54 112-165 88-143 (282)
88 PF12397 U3snoRNP10: U3 small 91.4 0.83 1.8E-05 32.8 6.2 59 95-155 2-61 (121)
89 KOG1060|consensus 90.9 2.1 4.5E-05 40.7 9.5 75 85-164 129-203 (968)
90 KOG2025|consensus 90.7 2.1 4.5E-05 40.3 9.2 79 82-165 103-188 (892)
91 KOG0567|consensus 90.4 0.64 1.4E-05 38.7 5.3 64 91-165 210-275 (289)
92 KOG2549|consensus 90.1 1.5 3.3E-05 39.8 7.7 102 47-148 281-390 (576)
93 PF11919 DUF3437: Domain of un 90.1 0.41 8.8E-06 33.3 3.3 46 114-161 4-49 (90)
94 smart00802 UME Domain in UVSB 89.8 0.66 1.4E-05 33.2 4.3 61 101-164 13-77 (107)
95 PF10363 DUF2435: Protein of u 89.8 1.3 2.8E-05 30.8 5.7 63 101-165 5-67 (92)
96 PF00514 Arm: Armadillo/beta-c 89.0 0.4 8.7E-06 27.7 2.3 26 140-165 11-36 (41)
97 PF08064 UME: UME (NUC010) dom 88.9 1.6 3.5E-05 31.0 5.8 60 102-164 14-77 (107)
98 smart00567 EZ_HEAT E-Z type HE 88.8 0.73 1.6E-05 24.8 3.1 15 113-127 1-15 (30)
99 KOG4500|consensus 88.5 0.87 1.9E-05 40.6 4.9 68 98-165 314-385 (604)
100 PF04826 Arm_2: Armadillo-like 88.3 1.1 2.3E-05 36.9 5.2 67 98-165 11-78 (254)
101 COG5064 SRP1 Karyopherin (impo 88.2 3.7 7.9E-05 35.8 8.4 68 96-163 240-307 (526)
102 KOG0915|consensus 88.1 0.69 1.5E-05 46.4 4.4 75 83-161 943-1018(1702)
103 KOG1991|consensus 88.1 5.2 0.00011 38.7 10.0 112 51-165 407-527 (1010)
104 KOG0414|consensus 87.6 1.6 3.4E-05 42.9 6.5 97 53-162 959-1056(1251)
105 KOG1824|consensus 87.6 2.3 5E-05 41.2 7.4 102 54-162 568-672 (1233)
106 PF13251 DUF4042: Domain of un 87.2 1.4 3E-05 34.6 4.9 56 78-133 3-74 (182)
107 COG5656 SXM1 Importin, protein 87.2 8.3 0.00018 36.7 10.5 89 75-163 384-482 (970)
108 PF00514 Arm: Armadillo/beta-c 87.0 1.3 2.7E-05 25.5 3.6 28 100-127 13-40 (41)
109 KOG1851|consensus 86.9 3.5 7.5E-05 41.8 8.4 88 78-165 1504-1593(1710)
110 KOG2933|consensus 86.9 14 0.00031 31.5 11.0 83 75-164 143-228 (334)
111 KOG1293|consensus 86.8 5.7 0.00012 36.9 9.2 90 75-164 433-527 (678)
112 KOG0392|consensus 86.8 1.6 3.4E-05 43.4 5.9 88 76-164 144-231 (1549)
113 PF03130 HEAT_PBS: PBS lyase H 86.4 0.66 1.4E-05 24.7 2.0 14 115-128 1-14 (27)
114 PF01347 Vitellogenin_N: Lipop 86.1 0.74 1.6E-05 41.7 3.3 72 85-164 511-583 (618)
115 PF14500 MMS19_N: Dos2-interac 86.0 1.6 3.5E-05 36.0 5.0 56 104-160 4-60 (262)
116 KOG2032|consensus 85.0 6.8 0.00015 35.4 8.6 78 85-163 238-322 (533)
117 KOG2259|consensus 84.7 2.9 6.3E-05 39.0 6.4 90 74-165 211-305 (823)
118 KOG1059|consensus 84.7 1.4 2.9E-05 41.5 4.3 77 82-163 127-203 (877)
119 PF01347 Vitellogenin_N: Lipop 84.5 2.6 5.6E-05 38.2 6.0 62 96-165 487-548 (618)
120 cd06561 AlkD_like A new struct 84.4 1.9 4.2E-05 32.9 4.6 58 102-165 108-165 (197)
121 PF12830 Nipped-B_C: Sister ch 84.4 3 6.4E-05 32.4 5.6 64 96-164 5-68 (187)
122 PF12719 Cnd3: Nuclear condens 84.3 5.2 0.00011 33.2 7.3 65 96-165 23-88 (298)
123 PF11698 V-ATPase_H_C: V-ATPas 83.7 5.9 0.00013 29.0 6.5 24 142-165 87-110 (119)
124 KOG1822|consensus 83.7 3.2 7E-05 42.7 6.6 87 79-165 894-983 (2067)
125 PF03224 V-ATPase_H_N: V-ATPas 82.9 1.7 3.7E-05 36.3 3.9 66 99-165 106-174 (312)
126 PF03224 V-ATPase_H_N: V-ATPas 82.7 14 0.00029 30.8 9.3 103 55-165 106-222 (312)
127 cd00197 VHS_ENTH_ANTH VHS, ENT 82.2 15 0.00032 25.8 8.5 80 85-164 21-109 (115)
128 smart00185 ARM Armadillo/beta- 81.9 2.3 4.9E-05 23.7 3.1 28 96-127 13-40 (41)
129 PHA02836 putative transmembran 81.8 1.1 2.4E-05 33.5 2.0 67 86-153 74-141 (153)
130 KOG4224|consensus 81.3 2 4.4E-05 37.7 3.8 88 78-165 184-275 (550)
131 KOG2022|consensus 81.1 54 0.0012 31.9 13.2 130 5-145 369-512 (982)
132 PF12765 Cohesin_HEAT: HEAT re 80.5 3.7 7.9E-05 24.2 3.7 38 84-121 2-40 (42)
133 PF10521 DUF2454: Protein of u 80.3 25 0.00055 29.0 10.0 111 47-164 112-247 (282)
134 KOG2274|consensus 79.8 27 0.00058 33.9 10.8 124 6-151 313-459 (1005)
135 KOG2062|consensus 79.5 2.2 4.7E-05 40.3 3.6 49 109-164 599-647 (929)
136 smart00185 ARM Armadillo/beta- 79.4 1.6 3.4E-05 24.4 1.8 24 142-165 13-36 (41)
137 KOG1943|consensus 79.4 14 0.0003 36.4 8.9 70 96-165 417-495 (1133)
138 COG5101 CRM1 Importin beta-rel 78.6 54 0.0012 31.1 12.1 89 45-133 412-517 (1053)
139 PF11701 UNC45-central: Myosin 78.6 3.4 7.5E-05 31.2 4.0 90 76-165 20-112 (157)
140 COG5218 YCG1 Chromosome conden 78.4 28 0.00061 32.6 10.2 84 75-163 105-192 (885)
141 PF08767 CRM1_C: CRM1 C termin 77.7 15 0.00033 30.9 8.1 113 52-165 65-189 (319)
142 smart00638 LPD_N Lipoprotein N 77.7 13 0.00028 33.5 8.1 51 82-132 377-431 (574)
143 COG5098 Chromosome condensatio 76.8 18 0.00038 34.6 8.5 64 97-162 344-407 (1128)
144 KOG2032|consensus 76.7 14 0.0003 33.5 7.6 58 104-161 347-407 (533)
145 KOG2160|consensus 76.6 7.6 0.00016 33.4 5.9 81 83-165 102-191 (342)
146 PF12719 Cnd3: Nuclear condens 76.6 34 0.00074 28.3 9.7 90 75-165 41-138 (298)
147 COG5064 SRP1 Karyopherin (impo 76.4 4.8 0.0001 35.1 4.6 108 55-164 158-266 (526)
148 KOG1820|consensus 75.7 10 0.00022 36.3 7.0 79 75-160 309-390 (815)
149 PF04826 Arm_2: Armadillo-like 75.4 7.9 0.00017 31.8 5.5 63 100-165 55-119 (254)
150 PF08623 TIP120: TATA-binding 74.9 8.7 0.00019 29.8 5.3 101 48-150 3-115 (169)
151 cd08050 TAF6 TATA Binding Prot 74.9 13 0.00028 31.7 6.9 79 84-163 198-290 (343)
152 COG5218 YCG1 Chromosome conden 74.1 8.5 0.00018 35.8 5.8 70 95-165 87-156 (885)
153 PF10363 DUF2435: Protein of u 73.9 8.8 0.00019 26.6 4.7 45 53-104 42-86 (92)
154 PF13251 DUF4042: Domain of un 73.9 41 0.00088 26.3 10.9 117 2-128 50-174 (182)
155 KOG4653|consensus 73.8 19 0.00041 34.8 8.1 101 54-164 768-870 (982)
156 PF11865 DUF3385: Domain of un 72.8 33 0.0007 26.0 8.0 47 113-162 101-149 (160)
157 PF09268 Clathrin-link: Clathr 72.5 1.8 3.8E-05 22.8 0.7 22 140-161 2-23 (24)
158 KOG1020|consensus 71.1 17 0.00036 37.1 7.4 66 95-163 812-877 (1692)
159 KOG2025|consensus 70.6 21 0.00046 33.9 7.5 71 94-165 80-150 (892)
160 KOG1061|consensus 70.3 12 0.00026 35.3 5.9 103 53-165 81-184 (734)
161 KOG2137|consensus 70.1 10 0.00022 35.6 5.4 80 83-165 372-453 (700)
162 COG5110 RPN1 26S proteasome re 70.0 11 0.00024 34.9 5.5 37 96-132 447-483 (881)
163 KOG1078|consensus 70.0 36 0.00078 32.6 8.9 83 78-165 444-527 (865)
164 KOG1060|consensus 69.9 17 0.00038 34.8 6.9 97 53-164 70-166 (968)
165 KOG1837|consensus 69.9 14 0.0003 37.7 6.5 82 78-161 1521-1602(1621)
166 PF12397 U3snoRNP10: U3 small 69.6 25 0.00055 24.9 6.5 72 51-130 3-76 (121)
167 KOG0392|consensus 69.4 9.4 0.0002 38.3 5.2 102 55-164 817-919 (1549)
168 PF07571 DUF1546: Protein of u 69.1 14 0.00029 25.5 4.8 55 109-164 16-72 (92)
169 cd03561 VHS VHS domain family; 68.9 24 0.00052 25.7 6.4 67 97-163 35-105 (133)
170 PF12074 DUF3554: Domain of un 68.7 40 0.00087 28.3 8.5 74 85-158 44-124 (339)
171 PF04118 Dopey_N: Dopey, N-ter 68.4 59 0.0013 27.5 9.4 82 77-163 154-247 (307)
172 PF12530 DUF3730: Protein of u 68.4 60 0.0013 26.0 10.7 105 51-165 118-234 (234)
173 KOG2062|consensus 68.3 8.5 0.00018 36.5 4.5 20 146-165 593-613 (929)
174 PF08623 TIP120: TATA-binding 68.2 10 0.00022 29.4 4.4 48 112-163 40-87 (169)
175 PF11698 V-ATPase_H_C: V-ATPas 67.6 22 0.00048 26.0 5.8 68 54-127 43-114 (119)
176 KOG1061|consensus 67.4 22 0.00047 33.6 7.0 97 53-164 48-144 (734)
177 KOG1058|consensus 67.2 5 0.00011 38.1 2.8 57 102-165 102-158 (948)
178 COG5098 Chromosome condensatio 67.1 54 0.0012 31.4 9.4 88 76-164 277-369 (1128)
179 KOG2081|consensus 67.0 20 0.00044 32.8 6.5 77 74-154 402-481 (559)
180 KOG1062|consensus 67.0 9.6 0.00021 36.3 4.6 64 95-165 103-166 (866)
181 KOG1058|consensus 66.4 5.6 0.00012 37.8 3.0 47 83-129 118-164 (948)
182 PF08167 RIX1: rRNA processing 66.0 55 0.0012 24.7 8.7 105 50-163 21-136 (165)
183 cd00872 PI3Ka_I Phosphoinositi 65.3 62 0.0013 25.0 8.6 85 44-146 30-114 (171)
184 PF09759 Atx10homo_assoc: Spin 63.5 9.8 0.00021 27.0 3.2 35 97-133 30-64 (102)
185 KOG0414|consensus 62.6 82 0.0018 31.6 10.0 88 75-163 289-381 (1251)
186 KOG1243|consensus 60.8 45 0.00098 31.4 7.7 64 98-164 329-392 (690)
187 COG5095 TAF6 Transcription ini 60.1 33 0.00072 29.6 6.2 101 47-147 270-378 (450)
188 cd03568 VHS_STAM VHS domain fa 60.1 38 0.00083 25.3 6.1 66 98-163 36-103 (144)
189 PF09759 Atx10homo_assoc: Spin 60.0 13 0.00029 26.3 3.4 49 116-165 3-54 (102)
190 COG5116 RPN2 26S proteasome re 59.0 16 0.00034 34.1 4.4 49 109-164 596-644 (926)
191 PF12333 Ipi1_N: Rix1 complex 58.5 31 0.00066 24.1 5.1 55 97-151 9-63 (102)
192 COG5240 SEC21 Vesicle coat com 58.4 62 0.0013 30.4 8.0 21 145-165 491-511 (898)
193 KOG1062|consensus 58.4 21 0.00045 34.1 5.2 72 80-157 123-195 (866)
194 KOG2137|consensus 56.5 60 0.0013 30.7 7.8 80 75-158 403-484 (700)
195 KOG1517|consensus 56.1 74 0.0016 31.8 8.5 102 54-161 599-723 (1387)
196 PF06685 DUF1186: Protein of u 55.9 42 0.0009 27.6 6.1 54 48-104 25-82 (249)
197 KOG1243|consensus 54.9 34 0.00074 32.1 5.9 75 81-158 350-425 (690)
198 PF08389 Xpo1: Exportin 1-like 54.3 32 0.00068 24.5 4.7 28 138-165 79-110 (148)
199 smart00145 PI3Ka Phosphoinosit 54.1 88 0.0019 24.4 7.4 65 75-146 55-119 (184)
200 KOG1059|consensus 53.4 70 0.0015 30.6 7.6 63 96-163 296-358 (877)
201 cd07064 AlkD_like_1 A new stru 52.6 45 0.00098 26.2 5.7 55 100-161 116-170 (208)
202 KOG4224|consensus 52.5 36 0.00078 30.1 5.4 59 98-157 250-308 (550)
203 PF01603 B56: Protein phosphat 52.5 1.4E+02 0.003 26.1 9.2 69 95-163 251-319 (409)
204 KOG2759|consensus 51.6 21 0.00046 31.6 3.9 89 74-165 342-433 (442)
205 KOG1949|consensus 51.4 18 0.0004 34.4 3.6 70 91-163 254-324 (1005)
206 cd03572 ENTH_epsin_related ENT 51.1 95 0.0021 22.7 7.0 71 95-165 34-114 (122)
207 KOG0567|consensus 51.0 26 0.00057 29.3 4.1 62 89-161 57-120 (289)
208 COG5240 SEC21 Vesicle coat com 50.3 1.4E+02 0.003 28.2 8.9 84 79-165 466-550 (898)
209 PF08713 DNA_alkylation: DNA a 50.3 1.1E+02 0.0024 23.4 7.5 67 53-129 119-185 (213)
210 PHA02641 hypothetical protein; 50.0 11 0.00025 28.9 1.8 32 120-151 145-177 (188)
211 KOG4524|consensus 49.7 30 0.00066 33.7 4.8 70 96-165 800-871 (1014)
212 KOG2956|consensus 49.6 24 0.00053 31.8 4.0 63 80-142 425-491 (516)
213 PF05918 API5: Apoptosis inhib 49.5 60 0.0013 29.9 6.6 54 73-127 71-124 (556)
214 KOG2021|consensus 49.5 1.5E+02 0.0033 28.7 9.2 104 54-157 382-509 (980)
215 PF09324 DUF1981: Domain of un 48.2 56 0.0012 22.1 4.9 63 102-165 21-83 (86)
216 KOG4413|consensus 47.5 1.9E+02 0.004 25.5 8.8 96 4-128 226-333 (524)
217 cd03569 VHS_Hrs_Vps27p VHS dom 47.4 83 0.0018 23.3 6.1 66 98-163 40-107 (142)
218 PF12054 DUF3535: Domain of un 46.9 95 0.002 27.5 7.3 79 75-153 101-180 (441)
219 KOG2005|consensus 46.2 30 0.00064 32.8 4.1 37 96-132 449-485 (878)
220 COG5116 RPN2 26S proteasome re 46.0 28 0.00061 32.5 3.9 30 102-131 519-548 (926)
221 smart00288 VHS Domain present 45.3 96 0.0021 22.6 6.1 67 97-163 35-104 (133)
222 PF13001 Ecm29: Proteasome sta 45.0 38 0.00081 30.4 4.6 54 110-165 385-438 (501)
223 KOG2759|consensus 45.0 97 0.0021 27.6 6.9 114 9-128 308-438 (442)
224 KOG1525|consensus 44.8 2E+02 0.0044 29.3 9.8 67 97-164 257-323 (1266)
225 PF08569 Mo25: Mo25-like; Int 44.3 1.1E+02 0.0025 26.1 7.2 85 79-163 179-276 (335)
226 PF11865 DUF3385: Domain of un 44.1 26 0.00056 26.6 2.9 31 97-127 8-39 (160)
227 cd03567 VHS_GGA VHS domain fam 43.9 1E+02 0.0022 22.9 6.0 66 98-163 37-109 (139)
228 PF04510 DUF577: Family of unk 43.1 56 0.0012 25.5 4.6 40 44-84 74-113 (174)
229 PLN03076 ARF guanine nucleotid 42.2 2.2E+02 0.0048 30.1 9.8 56 95-150 1456-1511(1780)
230 PF11701 UNC45-central: Myosin 41.7 1.3E+02 0.0028 22.5 6.5 49 75-123 99-154 (157)
231 PF12231 Rif1_N: Rap1-interact 41.5 2.3E+02 0.0049 24.3 11.5 36 129-164 262-297 (372)
232 KOG2149|consensus 40.5 2.6E+02 0.0056 24.7 8.9 75 73-148 111-189 (393)
233 KOG2022|consensus 40.1 1.5E+02 0.0032 29.0 7.7 84 73-158 479-566 (982)
234 KOG0889|consensus 40.0 38 0.00082 37.5 4.2 90 54-150 984-1084(3550)
235 PF11864 DUF3384: Domain of un 39.4 1.7E+02 0.0036 25.9 7.8 84 79-162 233-322 (464)
236 KOG2199|consensus 39.0 90 0.0019 27.7 5.7 67 95-161 41-109 (462)
237 COG5657 CSE1 CAS/CSE protein i 38.3 1.4E+02 0.0031 29.2 7.3 106 51-159 120-246 (947)
238 PF06371 Drf_GBD: Diaphanous G 37.9 56 0.0012 24.5 4.0 51 111-164 128-181 (187)
239 PF09155 DUF1940: Domain of un 37.5 64 0.0014 23.8 4.0 41 117-158 23-64 (143)
240 PF09685 Tic20: Tic20-like pro 37.2 85 0.0019 21.4 4.6 43 115-165 2-45 (109)
241 PF08506 Cse1: Cse1; InterPro 37.2 2.8E+02 0.006 24.0 10.7 104 47-150 75-197 (370)
242 KOG4535|consensus 36.8 12 0.00025 34.2 0.1 59 106-164 3-70 (728)
243 COG5656 SXM1 Importin, protein 36.4 2.5E+02 0.0055 27.2 8.5 109 51-164 405-522 (970)
244 PF13001 Ecm29: Proteasome sta 35.6 3.3E+02 0.0071 24.4 9.1 90 74-163 387-481 (501)
245 PF00790 VHS: VHS domain; Int 35.6 48 0.001 24.3 3.2 67 97-163 40-111 (140)
246 KOG2973|consensus 35.5 1.9E+02 0.004 25.0 7.0 67 53-128 43-111 (353)
247 KOG0803|consensus 35.1 1.6E+02 0.0036 30.0 7.5 103 53-163 40-146 (1312)
248 KOG1822|consensus 34.2 1E+02 0.0022 32.6 6.0 88 78-165 110-201 (2067)
249 PF08767 CRM1_C: CRM1 C termin 34.0 2.8E+02 0.0062 23.3 9.9 103 48-154 111-227 (319)
250 PF00613 PI3Ka: Phosphoinositi 34.0 93 0.002 24.1 4.7 76 53-145 44-119 (184)
251 PF04388 Hamartin: Hamartin pr 33.7 1.8E+02 0.004 27.3 7.3 81 81-165 53-135 (668)
252 COG4912 Predicted DNA alkylati 32.2 2.1E+02 0.0045 23.2 6.5 72 84-162 102-175 (222)
253 KOG2005|consensus 32.2 22 0.00047 33.6 1.0 62 97-163 413-474 (878)
254 PF14868 DUF4487: Domain of un 32.1 57 0.0012 30.0 3.7 38 95-132 519-556 (559)
255 cd03562 CID CID (CTD-Interacti 32.0 1.2E+02 0.0026 21.0 4.7 65 97-161 35-99 (114)
256 cd00870 PI3Ka_III Phosphoinosi 31.5 2.4E+02 0.0051 21.6 7.1 78 53-147 45-122 (166)
257 PF01851 PC_rep: Proteasome/cy 30.9 1E+02 0.0022 17.1 4.5 34 118-158 1-34 (35)
258 PF12830 Nipped-B_C: Sister ch 30.9 2.5E+02 0.0053 21.6 7.6 54 79-132 23-78 (187)
259 KOG0891|consensus 30.0 1.7E+02 0.0038 31.7 7.0 90 75-165 107-199 (2341)
260 cd00256 VATPase_H VATPase_H, r 30.0 1.5E+02 0.0032 26.4 5.8 63 100-164 103-167 (429)
261 PF07539 DRIM: Down-regulated 29.7 2.4E+02 0.0051 21.0 7.5 82 53-150 16-97 (141)
262 COG5095 TAF6 Transcription ini 29.2 3.8E+02 0.0083 23.3 8.4 69 78-150 215-286 (450)
263 COG5330 Uncharacterized protei 28.7 1.4E+02 0.0029 26.1 5.2 46 116-165 26-71 (364)
264 KOG1020|consensus 28.6 6.1E+02 0.013 26.7 10.1 83 75-162 830-913 (1692)
265 cd03567 VHS_GGA VHS domain fam 28.3 95 0.0021 23.1 3.7 50 105-163 11-60 (139)
266 PF14850 Pro_dh-DNA_bdg: DNA-b 28.3 2.1E+02 0.0046 20.7 5.4 86 74-164 9-106 (114)
267 PF05804 KAP: Kinesin-associat 28.1 1.6E+02 0.0036 27.9 6.0 106 54-165 533-644 (708)
268 PHA00657 crystallin beta/gamma 27.5 1.3E+02 0.0028 30.9 5.3 83 50-132 1906-2021(2052)
269 KOG1851|consensus 27.4 6.6E+02 0.014 26.5 10.1 80 44-127 1184-1266(1710)
270 PF09450 DUF2019: Domain of un 26.8 48 0.001 23.8 1.8 19 145-163 51-69 (106)
271 KOG2021|consensus 26.7 4.3E+02 0.0093 25.8 8.3 52 76-127 712-763 (980)
272 cd00197 VHS_ENTH_ANTH VHS, ENT 26.6 1.7E+02 0.0038 20.2 4.8 27 138-164 34-60 (115)
273 KOG4535|consensus 25.7 89 0.0019 28.7 3.6 33 96-128 147-179 (728)
274 KOG4412|consensus 25.6 63 0.0014 25.9 2.4 29 54-82 52-80 (226)
275 COG5231 VMA13 Vacuolar H+-ATPa 25.5 45 0.00097 29.0 1.7 22 144-165 402-423 (432)
276 PLN03060 inositol phosphatase- 25.2 79 0.0017 25.3 2.9 53 105-161 34-93 (206)
277 KOG1293|consensus 25.0 2.9E+02 0.0062 26.1 6.8 84 76-164 392-484 (678)
278 PF05918 API5: Apoptosis inhib 24.7 5.6E+02 0.012 23.7 9.2 131 7-152 55-189 (556)
279 KOG4199|consensus 24.3 5E+02 0.011 23.0 8.1 50 76-127 299-358 (461)
280 KOG2463|consensus 24.1 53 0.0012 28.4 1.9 29 66-94 174-203 (376)
281 PF10304 DUF2411: Domain of un 24.0 91 0.002 17.7 2.3 15 151-165 16-30 (36)
282 KOG2549|consensus 23.9 2.2E+02 0.0047 26.4 5.8 68 83-151 226-298 (576)
283 cd00256 VATPase_H VATPase_H, r 23.7 5.3E+02 0.011 23.0 9.1 68 54-127 353-424 (429)
284 PF08324 PUL: PUL domain; Int 23.4 2.1E+02 0.0047 22.8 5.3 63 97-163 198-267 (268)
285 PF05804 KAP: Kinesin-associat 23.3 1.5E+02 0.0033 28.1 4.9 73 77-155 306-386 (708)
286 cd06561 AlkD_like A new struct 23.1 2.1E+02 0.0047 21.4 5.0 54 73-129 118-171 (197)
287 TIGR03060 PS_II_psb29 photosys 23.1 90 0.0019 25.2 2.9 53 105-161 36-95 (214)
288 cd03572 ENTH_epsin_related ENT 22.9 78 0.0017 23.1 2.3 26 138-163 35-60 (122)
289 cd00864 PI3Ka Phosphoinositide 22.3 3.4E+02 0.0074 20.3 8.2 77 53-146 38-114 (152)
290 PF12331 DUF3636: Protein of u 22.3 1.2E+02 0.0025 23.1 3.2 74 77-152 74-147 (149)
291 cd03571 ENTH_epsin ENTH domain 22.2 1.8E+02 0.004 21.1 4.2 58 73-133 13-74 (123)
292 PRK13266 Thf1-like protein; Re 22.1 95 0.0021 25.2 2.9 53 105-161 36-95 (225)
293 PF01603 B56: Protein phosphat 21.4 59 0.0013 28.4 1.7 68 95-165 293-365 (409)
294 COG5110 RPN1 26S proteasome re 21.3 59 0.0013 30.3 1.7 62 97-163 411-472 (881)
295 KOG1048|consensus 21.3 1.7E+02 0.0037 27.8 4.7 63 102-165 236-299 (717)
296 KOG3961|consensus 20.2 5E+02 0.011 21.4 7.5 91 53-151 113-208 (262)
297 PF01417 ENTH: ENTH domain; I 20.2 3.2E+02 0.007 19.3 5.6 58 73-133 15-77 (125)
298 KOG1993|consensus 20.1 3.3E+02 0.0071 26.6 6.3 52 76-127 412-472 (978)
299 KOG2973|consensus 20.1 1.8E+02 0.0039 25.1 4.2 51 104-155 8-58 (353)
No 1
>KOG1241|consensus
Probab=100.00 E-value=2.9e-42 Score=307.78 Aligned_cols=162 Identities=50% Similarity=0.843 Sum_probs=155.6
Q ss_pred CCCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhH
Q psy12576 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKA 80 (165)
Q Consensus 1 ~~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~ 80 (165)
|+|++|+|++||||||+|+||+|+++..++.++.+.|.+| .|++|++++++.++|+||++|++||||+|||+|||++|
T Consensus 268 mks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p--~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA 345 (859)
T KOG1241|consen 268 MKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPP--SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA 345 (859)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence 6899999999999999999999999999999998888876 68899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576 81 AGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVA 160 (165)
Q Consensus 81 a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~a 160 (165)
|+.||..+|+++||+|+|+|+|||+++++++||++|+||+||||+|++|+.+..+++..++.+|.+++.+.||.-.||.+
T Consensus 346 Ag~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdT 425 (859)
T KOG1241|consen 346 AGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDT 425 (859)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhc
Q psy12576 161 ALQC 164 (165)
Q Consensus 161 A~~a 164 (165)
|.-+
T Consensus 426 aAwt 429 (859)
T KOG1241|consen 426 AAWT 429 (859)
T ss_pred HHHH
Confidence 7544
No 2
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-33 Score=247.51 Aligned_cols=161 Identities=31% Similarity=0.503 Sum_probs=147.0
Q ss_pred CCCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhH
Q psy12576 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKA 80 (165)
Q Consensus 1 ~~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~ 80 (165)
|+|++|+|++||+|||+||||+|.+........- ..|. .+.+|++.+...++|.||++|++|+||.++|+||++++
T Consensus 272 mks~nd~va~qavEfWsticeEeid~~~e~~~~p---e~p~-qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma 347 (858)
T COG5215 272 MKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP---EVPA-QNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA 347 (858)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc---cCch-hhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence 6899999999999999999999988766544321 2444 46779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576 81 AGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVA 160 (165)
Q Consensus 81 a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~a 160 (165)
|+.||...++.+|++|+.+|+.||++++++++|+.|+||+||||++++|+.+..++++.++.+|.|.+...||-.-|+..
T Consensus 348 A~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~t 427 (858)
T COG5215 348 ASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKST 427 (858)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhcC
Q psy12576 161 ALQCL 165 (165)
Q Consensus 161 A~~al 165 (165)
+..|+
T Consensus 428 tAwc~ 432 (858)
T COG5215 428 TAWCF 432 (858)
T ss_pred HHHHH
Confidence 87663
No 3
>KOG2171|consensus
Probab=99.95 E-value=2.5e-28 Score=225.93 Aligned_cols=142 Identities=23% Similarity=0.384 Sum_probs=122.4
Q ss_pred CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCC--CcccHHHHHHHHhHHHHHHHHHhhccCCCC---------C
Q psy12576 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPP--TRTSRFYAKGALQYLVPILTQKLTKQEELD---------D 71 (165)
Q Consensus 3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~---------d 71 (165)
+-++.++..|+||..+++|. .| .|++.. +.+.|+|.+|.+|++.++|+ |
T Consensus 260 ~l~~~~R~~ALe~ivs~~e~----------------Ap~~~k~~~~----~~~~lv~~~l~~mte~~~D~ew~~~d~~de 319 (1075)
T KOG2171|consen 260 ELENSIRHLALEFLVSLSEY----------------APAMCKKLAL----LGHTLVPVLLAMMTEEEDDDEWSNEDDLDE 319 (1075)
T ss_pred cccHHHHHHHHHHHHHHHHh----------------hHHHhhhchh----hhccHHHHHHHhcCCcccchhhcccccccc
Confidence 45788999999999999986 12 122222 45679999999999765441 2
Q ss_pred cCCCchhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576 72 EDDWNPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT 150 (165)
Q Consensus 72 ddew~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l 150 (165)
||+.+++.+|.++||++|.++| ++++|++++++..+++|++|++|+||+||||+|+|||++.+.+ +++.||++|++++
T Consensus 320 d~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~Vl~~l 398 (1075)
T KOG2171|consen 320 DDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIVLNGL 398 (1075)
T ss_pred ccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHhhc
Confidence 3336889999999999999999 7899999999999999999999999999999999999997665 8999999999999
Q ss_pred CCCCHHHHHHHHhcC
Q psy12576 151 QSPDTQIRVAALQCL 165 (165)
Q Consensus 151 ~D~~p~VR~aA~~al 165 (165)
+|||||||+|||+|+
T Consensus 399 ~DphprVr~AA~nai 413 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAI 413 (1075)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999986
No 4
>KOG2023|consensus
Probab=99.95 E-value=2.2e-28 Score=216.96 Aligned_cols=141 Identities=22% Similarity=0.446 Sum_probs=123.9
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccC--------------
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQE-------------- 67 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~-------------- 67 (165)
|..+|+||++|+|||.++||. | .++..+..++++|+|+|++.|.+.|
T Consensus 266 qd~dE~VALEACEFwla~aeq-----------------p--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~ 326 (885)
T KOG2023|consen 266 QDVDENVALEACEFWLALAEQ-----------------P--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES 326 (885)
T ss_pred cCcchhHHHHHHHHHHHHhcC-----------------c--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence 567889999999999999984 2 4566788889999999999998631
Q ss_pred --------------------------CC--C---CcC----CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCc
Q psy12576 68 --------------------------EL--D---DED----DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHAD 112 (165)
Q Consensus 68 --------------------------ed--~---ddd----ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~d 112 (165)
|| | ||| +||.+|+++.+||.||..+|++++|.+||++++++.+++
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~ 406 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEE 406 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcch
Confidence 11 1 111 499999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576 113 WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL 162 (165)
Q Consensus 113 w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~ 162 (165)
|..|+||++|||+|+|||.+.+. +||+.++|++++.|.|..|.||.-.|
T Consensus 407 W~vrEagvLAlGAIAEGcM~g~~-p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 407 WKVREAGVLALGAIAEGCMQGFV-PHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred hhhhhhhHHHHHHHHHHHhhhcc-cchHHHHHHHHHHhccCccceeeeee
Confidence 99999999999999999999755 59999999999999999999998665
No 5
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.10 E-value=4e-10 Score=79.76 Aligned_cols=86 Identities=24% Similarity=0.191 Sum_probs=76.7
Q ss_pred chhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC
Q psy12576 76 NPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS 152 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D 152 (165)
|.++.|..+|..+|..+|. .-++.++|.|-..+.++|||.|++|+=||+.|+..+...++. +.+.|...+++.+.|
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSAD 79 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC
Confidence 4578889999999999995 356778888889999999999999999999999988876654 899999999999999
Q ss_pred CCHHHHHHHH
Q psy12576 153 PDTQIRVAAL 162 (165)
Q Consensus 153 ~~p~VR~aA~ 162 (165)
|+++||++|.
T Consensus 80 ~d~~Vr~~a~ 89 (97)
T PF12755_consen 80 PDENVRSAAE 89 (97)
T ss_pred CchhHHHHHH
Confidence 9999999995
No 6
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.99 E-value=7e-10 Score=69.84 Aligned_cols=52 Identities=21% Similarity=0.129 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 113 WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 113 w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
|+.|++|+++||.+++++... ...+++.+++.++..|+|+++.||.+|+.||
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~-~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aL 52 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL-LQPYLPELLPALIPLLQDDDDSVRAAAAWAL 52 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH-HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 899999999999999999885 4458999999999999999999999999875
No 7
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.90 E-value=1.5e-09 Score=76.77 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 115 HRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 115 ~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+|++|++++++++.|.... ...+++.|++.|++.+.|+++|||++||++|
T Consensus 2 ~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL 51 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEAL 51 (97)
T ss_pred chhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6999999999999999986 5569999999999999999999999999985
No 8
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.89 E-value=2.7e-08 Score=78.99 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=91.3
Q ss_pred chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHH
Q psy12576 4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGV 83 (165)
Q Consensus 4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~ 83 (165)
....++..|++++..++..-. ..+....+.++|.|+..+.+.. -..+.+|..
T Consensus 65 ~Rs~v~~~A~~~l~~l~~~l~---------------------~~~~~~~~~~l~~Ll~~~~~~~-------~~i~~~a~~ 116 (228)
T PF12348_consen 65 LRSKVSKTACQLLSDLARQLG---------------------SHFEPYADILLPPLLKKLGDSK-------KFIREAANN 116 (228)
T ss_dssp H---HHHHHHHHHHHHHHHHG---------------------GGGHHHHHHHHHHHHHGGG----------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHh---------------------HhHHHHHHHHHHHHHHHHcccc-------HHHHHHHHH
Confidence 344577888888888886410 1244445678899999888532 256889999
Q ss_pred HHHHHHHHcCCcchhhH-HHHHhhhcccCchHHHHHHHHHHHHhhcCCc--chhchH--hHHHHHHHHHhhcCCCCHHHH
Q psy12576 84 CLMLLSSCCEEDMVPHI-LPFVNANIEHADWRHRDAALMSFGAILVRPS--FIITIS--ERNFIMEVVCEATQSPDTQIR 158 (165)
Q Consensus 84 ~Ld~la~~~~~~i~~~v-l~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~--~~~~~~--~l~~il~~v~~~l~D~~p~VR 158 (165)
||+.+...++ ..+.+ ++++...+.+.+|..|..++..+..+++..+ ...... .++.+++.+.+++.|++|.||
T Consensus 117 ~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR 194 (228)
T PF12348_consen 117 ALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVR 194 (228)
T ss_dssp HHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHH
T ss_pred HHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHH
Confidence 9999999988 22334 6778889999999999999999999998777 222222 368999999999999999999
Q ss_pred HHHHhcC
Q psy12576 159 VAALQCL 165 (165)
Q Consensus 159 ~aA~~al 165 (165)
.+|..|+
T Consensus 195 ~~Ar~~~ 201 (228)
T PF12348_consen 195 EAARECL 201 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9997763
No 9
>KOG2171|consensus
Probab=98.75 E-value=2.5e-08 Score=94.04 Aligned_cols=108 Identities=22% Similarity=0.301 Sum_probs=90.6
Q ss_pred HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---chhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MVPHILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
.+|.+++.+-.++... +|.-++||..+|..++.-+++. .+|.+++.|-+.+++++++.|.||+.|+|+++
T Consensus 345 v~p~~~~~l~~~l~S~-------~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 345 VLPPLFEALEAMLQST-------EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMS 417 (1075)
T ss_pred ehHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhh
Confidence 3445555555555543 4999999999999999988864 68999999999999999999999999999999
Q ss_pred cCCcchhchHhHHHHHHHHHhhcCC-CCHHHHHHHHhcC
Q psy12576 128 VRPSFIITISERNFIMEVVCEATQS-PDTQIRVAALQCL 165 (165)
Q Consensus 128 EG~~~~~~~~~l~~il~~v~~~l~D-~~p~VR~aA~~al 165 (165)
....+.+.+++...+.|.++..+.| .++||+.+|..||
T Consensus 418 tdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al 456 (1075)
T KOG2171|consen 418 TDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAAL 456 (1075)
T ss_pred hhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHH
Confidence 9998888877888888899988875 5689999998764
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.52 E-value=3.1e-07 Score=64.49 Aligned_cols=105 Identities=21% Similarity=0.115 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchh-hHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVP-HILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~-~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
.++|.++++|.+. +|.....|..+|..++...+. .++. .++|.+.+.+.+++++.|+.++.+|+.++.+
T Consensus 7 ~~i~~l~~~l~~~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 7 GGLPALVSLLSSS-------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred CChHHHHHHHHcC-------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 3677788877643 278888899999988876432 3343 6677777778889999999999999999998
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......-....+++.+.+.+.+++..||..|+.+|
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l 115 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHH
Confidence 765333223356899999999999999999998764
No 11
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.31 E-value=4.8e-06 Score=56.17 Aligned_cols=86 Identities=24% Similarity=0.202 Sum_probs=60.2
Q ss_pred HHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc
Q psy12576 56 VPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT 135 (165)
Q Consensus 56 ~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~ 135 (165)
+|.|++.|.+.+ +|..+..+..+|. .++ -+.++|.+.+.+++++|..|.+|+.++|.+.
T Consensus 1 i~~L~~~l~~~~------~~~vr~~a~~~L~----~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDP------DPQVRAEAARALG----ELG---DPEAIPALIELLKDEDPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSS------SHHHHHHHHHHHH----CCT---HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCC------CHHHHHHHHHHHH----HcC---CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence 467777775422 3677666665555 223 2345555666668999999999999999884
Q ss_pred hHhHHHHHHHHHhhcC-CCCHHHHHHHHhcC
Q psy12576 136 ISERNFIMEVVCEATQ-SPDTQIRVAALQCL 165 (165)
Q Consensus 136 ~~~l~~il~~v~~~l~-D~~p~VR~aA~~al 165 (165)
-+..++.+.+.+. |++..||.+|..+|
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 2446778888876 56788999998875
No 12
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=98.22 E-value=4.8e-06 Score=71.79 Aligned_cols=110 Identities=21% Similarity=0.341 Sum_probs=72.3
Q ss_pred chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHH-HHHHHhhccCCC------C------
Q psy12576 4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVP-ILTQKLTKQEEL------D------ 70 (165)
Q Consensus 4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p-~ll~~l~~~~ed------~------ 70 (165)
..+..+..|+.|.+++++.-.- . . .-..+ ..+..|+. +++..|+-.++| |
T Consensus 154 ~~D~lv~~al~FL~~v~~~~~~-----~-------~-lf~~~----~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIr 216 (370)
T PF08506_consen 154 KYDILVSKALQFLSSVAESPHH-----K-------N-LFENK----PHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIR 216 (370)
T ss_dssp GGHHHHHHHHHHHHHHHTSHHH-----H-------T-TT-SH----HHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHH
T ss_pred cccHHHHHHHHHHHHHHcchhH-----H-------H-HhCCH----HHHHHHHHHhccCccCCCHHHHHHHccCHHHHHH
Confidence 4566788999999998864210 0 0 00011 22333333 445555533322 1
Q ss_pred ---C-cCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc------cCchHHHHHHHHHHHHhhcCC
Q psy12576 71 ---D-EDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE------HADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 71 ---d-ddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~------~~dw~~R~Aa~~Alg~i~EG~ 130 (165)
| .|--++++||...|-.|+...++.+.+.++.+|+..++ +.+|+.+++|+.-+|+++.-.
T Consensus 217 rd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~ 286 (370)
T PF08506_consen 217 RDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKG 286 (370)
T ss_dssp HHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS
T ss_pred hhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhh
Confidence 1 12358999999999999999998899999999999887 678999999999999998533
No 13
>KOG1241|consensus
Probab=98.21 E-value=5.7e-06 Score=75.92 Aligned_cols=110 Identities=29% Similarity=0.334 Sum_probs=82.4
Q ss_pred HHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcch----hhHHHHHhhhccc--CchHHHHHHHHHH
Q psy12576 50 GALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMV----PHILPFVNANIEH--ADWRHRDAALMSF 123 (165)
Q Consensus 50 ~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~----~~vl~~i~~~l~~--~dw~~R~Aa~~Al 123 (165)
+.||.|++.|..+..... .-....++..+|.++.+.+...++ ..++.-|-.+... ++-+.|-||+-||
T Consensus 125 n~wp~li~~lv~nv~~~~------~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL 198 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQ------ASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNAL 198 (859)
T ss_pred hhCHHHHHHHHHhccccc------chHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHH
Confidence 468888888888877422 124456666666666666553333 2355555555543 5678999999999
Q ss_pred HHhhcCCcch-hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 124 GAILVRPSFI-ITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 124 g~i~EG~~~~-~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
..-+|+...+ ..+.+++.||++||+.++.|+.+||.||++||
T Consensus 199 ~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Cl 241 (859)
T KOG1241|consen 199 YNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCL 241 (859)
T ss_pred HHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHH
Confidence 9999999864 46668999999999999999999999999996
No 14
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=98.06 E-value=5.6e-06 Score=46.29 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=27.5
Q ss_pred HHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576 100 ILPFVNANIEHADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~ 130 (165)
++|.+.+.++|++|+.|.+|+.+||.|++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5788889999999999999999999999876
No 15
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.03 E-value=7.9e-06 Score=57.24 Aligned_cols=65 Identities=17% Similarity=0.086 Sum_probs=51.6
Q ss_pred HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhH-HHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 100 ILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISER-NFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l-~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+++.+.+.+.+.+|..|+.|+.+++.++.+..+... ..+ ..++|.+++.+.|++++||..|+.+|
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L 73 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQ-AVVEAGGLPALVQLLKSEDEEVVKAALWAL 73 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCChHHHHHHHhCCCHHHHHHHHHHH
Confidence 445555566778899999999999999998544322 233 38999999999999999999998764
No 16
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.98 E-value=4.6e-06 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.638 Sum_probs=21.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 142 IMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 142 il~~v~~~l~D~~p~VR~aA~~al 165 (165)
|+|.+++.++||+++||.+|++||
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l 24 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECL 24 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHH
Confidence 689999999999999999999885
No 17
>KOG1242|consensus
Probab=97.98 E-value=3.1e-05 Score=69.54 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI 133 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~ 133 (165)
.++|.+|...-+. .-..+.+|..+...+-.+++.+=++.++|-.-.++....||-+.|++-.+|++++ |.+.
T Consensus 216 ~~lp~il~~~~d~-------~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~ 287 (569)
T KOG1242|consen 216 PILPSILTNFGDK-------INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPK 287 (569)
T ss_pred hhHHHHHHHhhcc-------chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchH
Confidence 4555555544422 2467889999999999998876666666555555555599999999999997666 5555
Q ss_pred hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 134 ITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 134 ~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.+...++.++|.+.+-|.|-+|.||.|+..||
T Consensus 288 qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l 319 (569)
T KOG1242|consen 288 QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETL 319 (569)
T ss_pred HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence 77778999999999999999999999998875
No 18
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.97 E-value=1.7e-05 Score=53.37 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=43.4
Q ss_pred HHHhhhc-ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 102 PFVNANI-EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 102 ~~i~~~l-~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
|++-+.+ .+++|..|..++.+||.+ .-+..++.+.+.++|++|.||.+|+.+|
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~-----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL 55 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL-----------GDPEAIPALIELLKDEDPMVRRAAARAL 55 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC-----------THHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc-----------CCHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5555666 799999999999999932 2346688899999999999999998764
No 19
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.85 E-value=8.5e-05 Score=57.47 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=68.6
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc-CCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILV-RPSFIITISERNFIMEVVCEATQSPD 154 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E-G~~~~~~~~~l~~il~~v~~~l~D~~ 154 (165)
..+..+..+|.-|+..+| .++.+.+|.+...+.|+++..|+.|+++|..+.. |.-+ -..+++..++..+.|++
T Consensus 3 ~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILKLLVDEN 76 (178)
T ss_pred HHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHHHHcCCC
Confidence 345667788888888888 5899999999999999999999999999999664 3322 34566677788889999
Q ss_pred HHHHHHHHhcC
Q psy12576 155 TQIRVAALQCL 165 (165)
Q Consensus 155 p~VR~aA~~al 165 (165)
|.||..|..++
T Consensus 77 ~~Ir~~A~~~~ 87 (178)
T PF12717_consen 77 PEIRSLARSFF 87 (178)
T ss_pred HHHHHHHHHHH
Confidence 99999997653
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.78 E-value=7.5e-05 Score=65.68 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHH-HHHHHHhhcCCCCHHHHHH
Q psy12576 82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNF-IMEVVCEATQSPDTQIRVA 160 (165)
Q Consensus 82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~-il~~v~~~l~D~~p~VR~a 160 (165)
+-+|..|+......+.+.+++.|.+.+.|++|..|++|++|+..+.....+. .+. +++.+.+.+.|++|.|+.+
T Consensus 97 ~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~~~~~l~~lL~d~~~~V~~~ 171 (526)
T PF01602_consen 97 GLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDELIPKLKQLLSDKDPSVVSA 171 (526)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGGHHHHHHHHTTHSSHHHHHH
T ss_pred HHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHHHHHHHhhhccCCcchhHHH
Confidence 4458888887777899999999999999999999999999999999765442 222 7899999999999999999
Q ss_pred HHhcC
Q psy12576 161 ALQCL 165 (165)
Q Consensus 161 A~~al 165 (165)
|+.++
T Consensus 172 a~~~l 176 (526)
T PF01602_consen 172 ALSLL 176 (526)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 21
>PRK09687 putative lyase; Provisional
Probab=97.76 E-value=0.00016 Score=60.03 Aligned_cols=65 Identities=12% Similarity=-0.055 Sum_probs=29.2
Q ss_pred HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHh
Q psy12576 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAI 126 (165)
Q Consensus 55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i 126 (165)
.+|.|..++.+. .++.++.+|..+|..+...- ..-.+.+++.....+.+++|+.|.+++.|||.+
T Consensus 91 a~~~L~~l~~~D------~d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~ 155 (280)
T PRK09687 91 VFNILNNLALED------KSACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI 155 (280)
T ss_pred HHHHHHHHHhcC------CCHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc
Confidence 456665554421 12455555554444331100 011233444444455555555665555555533
No 22
>KOG2023|consensus
Probab=97.53 E-value=0.00016 Score=66.11 Aligned_cols=107 Identities=16% Similarity=0.251 Sum_probs=86.3
Q ss_pred HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcch---hhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMV---PHILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~---~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
.++.++|.|=+.|.. ++|-.+.++--+|..+|.-+-+-++ |.+.||+-+.+.+.-+-.|.-..++|+--+
T Consensus 390 lL~~l~PlLk~~L~~-------~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys 462 (885)
T KOG2023|consen 390 LLPILLPLLKEHLSS-------EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYS 462 (885)
T ss_pred HHHHHHHHHHHHcCc-------chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhh
Confidence 666677776666665 3699999999999999998776554 557899999999999999999999999666
Q ss_pred cCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 128 VRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 128 EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
--....-..+++..+|.-+++.+-|.+.+|+.|||-|
T Consensus 463 ~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsA 499 (885)
T KOG2023|consen 463 KWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSA 499 (885)
T ss_pred hhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4333333556788889989999999999999999976
No 23
>PRK09687 putative lyase; Provisional
Probab=97.50 E-value=0.0006 Score=56.62 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=53.7
Q ss_pred CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576 74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP 153 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~ 153 (165)
+|.++.++..+|. .+++ +..++.+...+.+++|..|.+|+.+||.+..+ -+.+.+.+...+.|+
T Consensus 141 ~~~VR~~a~~aLg----~~~~---~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~ 204 (280)
T PRK09687 141 STNVRFAVAFALS----VIND---EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDK 204 (280)
T ss_pred CHHHHHHHHHHHh----ccCC---HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCC
Confidence 5788888777773 2332 33445555566689999999999999998322 224566777888899
Q ss_pred CHHHHHHHHhcC
Q psy12576 154 DTQIRVAALQCL 165 (165)
Q Consensus 154 ~p~VR~aA~~al 165 (165)
++.||.+|..+|
T Consensus 205 ~~~VR~~A~~aL 216 (280)
T PRK09687 205 NEEIRIEAIIGL 216 (280)
T ss_pred ChHHHHHHHHHH
Confidence 999998887654
No 24
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.44 E-value=7.2e-05 Score=46.63 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=43.9
Q ss_pred CchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHh
Q psy12576 75 WNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAI 126 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i 126 (165)
|..+.+|..+|..++...++ ..++.++|.+...+.+++...|.+|+.|||.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 56678888888887777774 46788999999999999999999999999976
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.37 E-value=0.0034 Score=55.21 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=79.5
Q ss_pred HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhh-HHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576 52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPH-ILPFVNANIEHADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~-vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~ 130 (165)
.+.++|.+.+.+... .+.+++.|..|+-.+....|+ .++. +++.+.+.+.++++..+.+|+.++..+ -+
T Consensus 112 ~~~l~~~v~~ll~~~-------~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~ 181 (526)
T PF01602_consen 112 AEPLIPDVIKLLSDP-------SPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KC 181 (526)
T ss_dssp HHHHHHHHHHHHHSS-------SHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HC
T ss_pred hhHHHHHHHHHhcCC-------chHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--cc
Confidence 355666666666632 379999999999999999886 5555 789999999999999999999999999 22
Q ss_pred cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.+......++.+.+.+++.+.+++|-++..++..
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~ 215 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRL 215 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHH
Confidence 2221114578888888888899999998877654
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.35 E-value=0.0023 Score=60.87 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=43.9
Q ss_pred CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576 74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP 153 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~ 153 (165)
+|..+.+|..+|..+ |. +..++.+...+.+++|..|++|+.+||.+ .|. +...+.+...++|+
T Consensus 820 d~~VR~~Aa~aL~~l----~~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~~~---------~~a~~~L~~al~D~ 882 (897)
T PRK13800 820 AWQVRQGAARALAGA----AA---DVAVPALVEALTDPHLDVRKAAVLALTRW-PGD---------PAARDALTTALTDS 882 (897)
T ss_pred ChHHHHHHHHHHHhc----cc---cchHHHHHHHhcCCCHHHHHHHHHHHhcc-CCC---------HHHHHHHHHHHhCC
Confidence 466666666666533 21 12223444455677777777777777775 111 12345555667777
Q ss_pred CHHHHHHHHhcC
Q psy12576 154 DTQIRVAALQCL 165 (165)
Q Consensus 154 ~p~VR~aA~~al 165 (165)
++.||.+|..+|
T Consensus 883 d~~Vr~~A~~aL 894 (897)
T PRK13800 883 DADVRAYARRAL 894 (897)
T ss_pred CHHHHHHHHHHH
Confidence 777777777654
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.31 E-value=0.0023 Score=60.94 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=30.1
Q ss_pred hhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 106 ANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 106 ~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
..+.++|+..|.+|+.+||.+.. .+.++..+.|+++.||.+|..+|
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL 766 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGL 766 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHH
Confidence 45667777777777777776421 12345667788888888777654
No 28
>KOG1991|consensus
Probab=96.93 E-value=0.0054 Score=58.19 Aligned_cols=107 Identities=24% Similarity=0.257 Sum_probs=82.8
Q ss_pred HHHHHHhhccCCCCC-----------------cCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc--------cC
Q psy12576 57 PILTQKLTKQEELDD-----------------EDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE--------HA 111 (165)
Q Consensus 57 p~ll~~l~~~~ed~d-----------------ddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~--------~~ 111 (165)
.++|.+|+-.|+|.+ +|-.+|..||..+|-.++..=|+..+|.+++|+..-+. ..
T Consensus 351 ~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~ 430 (1010)
T KOG1991|consen 351 DVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNK 430 (1010)
T ss_pred HhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCcc
Confidence 456777776665521 23358888999999999999988999999999988766 35
Q ss_pred chHHHHHHHHHHHHhhcCCcchh-chHhH-HHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 112 DWRHRDAALMSFGAILVRPSFII-TISER-NFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 112 dw~~R~Aa~~Alg~i~EG~~~~~-~~~~l-~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
++|..++|+.++|++++-..++. .++.+ ..+++.|.+.+++|-=..|.-||.
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~ 484 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACW 484 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence 68899999999999998776642 23345 455678889999999888888874
No 29
>KOG0212|consensus
Probab=96.93 E-value=0.00097 Score=60.03 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHHHcC-C---cchhhHHH-HHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576 77 PCKAAGVCLMLLSSCCE-E---DMVPHILP-FVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 77 ~~~~a~~~Ld~la~~~~-~---~i~~~vl~-~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
.+|+|+.-|..+...+- + .-+.-++. .+..+..+++-..|++|++++++++-|-+.+... |+..|++-|+..+.
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~~iv~Pv~~cf~ 94 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLEKIVPPVLNCFS 94 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHHHhhHHHHHhcc
Confidence 45555555555543322 1 12233333 5567788888888999999999998877775554 99999999999999
Q ss_pred CCCHHHHHHHHhcC
Q psy12576 152 SPDTQIRVAALQCL 165 (165)
Q Consensus 152 D~~p~VR~aA~~al 165 (165)
|++.+|||.||+.|
T Consensus 95 D~d~~vRyyACEsL 108 (675)
T KOG0212|consen 95 DQDSQVRYYACESL 108 (675)
T ss_pred CccceeeeHhHHHH
Confidence 99999999999864
No 30
>KOG0915|consensus
Probab=96.90 E-value=0.0029 Score=62.26 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=51.8
Q ss_pred hcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576 107 NIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL 162 (165)
Q Consensus 107 ~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~ 162 (165)
++.+..||.|+|+++|+.-+.-|....+...+++.+...+.+...|=+..||.||=
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~ 1102 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAAD 1102 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999887777778999999999999999999999983
No 31
>KOG0166|consensus
Probab=96.86 E-value=0.011 Score=53.11 Aligned_cols=114 Identities=16% Similarity=0.099 Sum_probs=87.5
Q ss_pred cHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHc-CC---cchhhHHHHHhhhcccCchHHHHHH
Q psy12576 44 SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCC-EE---DMVPHILPFVNANIEHADWRHRDAA 119 (165)
Q Consensus 44 ~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~-~~---~i~~~vl~~i~~~l~~~dw~~R~Aa 119 (165)
++.|+.+ ..+++.|+.++...+. -+..+.+.=+|..|-..- |. ..+.++||-+...+.+.|.....=|
T Consensus 186 ~Rd~vl~--~g~l~pLl~~l~~~~~------~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da 257 (514)
T KOG0166|consen 186 CRDYVLS--CGALDPLLRLLNKSDK------LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA 257 (514)
T ss_pred HHHHHHh--hcchHHHHHHhccccc------hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4556554 4567778888875431 245566666666665444 21 4678899999999999999999999
Q ss_pred HHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 120 LMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 120 ~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
++|++.+.+|..+.+....--.++|.++..|..+.+.|+..|+.++
T Consensus 258 ~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 258 CWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred HHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 9999999999999765444567899999999999999999988764
No 32
>KOG2956|consensus
Probab=96.84 E-value=0.01 Score=52.50 Aligned_cols=87 Identities=23% Similarity=0.176 Sum_probs=70.5
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD 154 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~ 154 (165)
-+...|+.-|+-.+|++.|-.-+-.+-|.|.. .|-..--|++..+-=+.|+.+...+-..++.|+|.++++..++.
T Consensus 386 ~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~S 461 (516)
T KOG2956|consen 386 EVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTS 461 (516)
T ss_pred hHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCch
Confidence 45667788889999999996655555565544 55444456666888899999987777789999999999999999
Q ss_pred HHHHHHHHhcC
Q psy12576 155 TQIRVAALQCL 165 (165)
Q Consensus 155 p~VR~aA~~al 165 (165)
..||.+|.+||
T Consensus 462 S~VRKtaVfCL 472 (516)
T KOG2956|consen 462 STVRKTAVFCL 472 (516)
T ss_pred HHhhhhHHHhH
Confidence 99999999997
No 33
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.84 E-value=0.0031 Score=49.86 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=64.4
Q ss_pred CCCchhhHHHHHHHHHHHHc-CCc----chh---hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHH
Q psy12576 73 DDWNPCKAAGVCLMLLSSCC-EED----MVP---HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIME 144 (165)
Q Consensus 73 dew~~~~~a~~~Ld~la~~~-~~~----i~~---~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~ 144 (165)
.+|+.+..|..-|..+...- +.. +++ .++..+...+.|..-..-..|+.+++.++.+.+.. ..++.+.++|
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~ 97 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-FEPYADILLP 97 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-GHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHH
Confidence 36999998888888886665 222 222 23355667777877788899999999999988886 5678999999
Q ss_pred HHHhhcCCCCHHHHHHHHhcC
Q psy12576 145 VVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 145 ~v~~~l~D~~p~VR~aA~~al 165 (165)
.+++.+.|+...||.+|..||
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L 118 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNAL 118 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHH
Confidence 999999999999999998874
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=96.84 E-value=0.01 Score=55.70 Aligned_cols=80 Identities=10% Similarity=0.086 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576 83 VCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL 162 (165)
Q Consensus 83 ~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~ 162 (165)
-+|-.|+..-...+++.+++.+.+.+.+.++..|++|++|++-+..-..+.. .-..+++.+.+.+.|++|.|..+|+
T Consensus 124 LALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv---~~~~~~~~L~~LL~D~dp~Vv~nAl 200 (746)
T PTZ00429 124 LAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF---YQQDFKKDLVELLNDNNPVVASNAA 200 (746)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc---cccchHHHHHHHhcCCCccHHHHHH
Confidence 4577888776678999999999999999999999999999999986444321 1123455566678899999999998
Q ss_pred hcC
Q psy12576 163 QCL 165 (165)
Q Consensus 163 ~al 165 (165)
.+|
T Consensus 201 ~aL 203 (746)
T PTZ00429 201 AIV 203 (746)
T ss_pred HHH
Confidence 653
No 35
>KOG0213|consensus
Probab=96.69 E-value=0.0053 Score=57.23 Aligned_cols=84 Identities=14% Similarity=0.306 Sum_probs=68.9
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccC-chHHHHHHHHHHHHhhc--CCcchhchHhHHHHHHHHHhhcCC
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHA-DWRHRDAALMSFGAILV--RPSFIITISERNFIMEVVCEATQS 152 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~-dw~~R~Aa~~Alg~i~E--G~~~~~~~~~l~~il~~v~~~l~D 152 (165)
.++..-+.+....|.++| +|.++||++.--.|- .|+-|+.++...-.|++ ||+ ++ +|+..++.+|-.++.|
T Consensus 491 YVRnttarafavvasalg---ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcs--vl-phl~~lv~ii~~gl~D 564 (1172)
T KOG0213|consen 491 YVRNTTARAFAVVASALG---IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCS--VL-PHLKPLVKIIEHGLKD 564 (1172)
T ss_pred HHHHHHHHHHHHHHHHhC---cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcch--hh-hhhHHHHHHHHHhhcc
Confidence 344444455667888888 889999999888876 89999999999998887 665 34 5899999999999999
Q ss_pred CCHHHHHHHHhcC
Q psy12576 153 PDTQIRVAALQCL 165 (165)
Q Consensus 153 ~~p~VR~aA~~al 165 (165)
.+..||.-+..||
T Consensus 565 e~qkVR~itAlal 577 (1172)
T KOG0213|consen 565 EQQKVRTITALAL 577 (1172)
T ss_pred cchhhhhHHHHHH
Confidence 9999998877653
No 36
>KOG1242|consensus
Probab=96.62 E-value=0.0098 Score=53.82 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
..++|.++..|.+ +-|....++.+.|+.|+.+-|+ ..+|.++|-+.+-+.+..+..|+||+-++-.+.+-
T Consensus 253 K~llpsll~~l~~-------~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 253 KLLLPSLLGSLLE-------AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred hHhhhhhHHHHHH-------HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 3455555555543 2599899999999999999996 36899999999999999999999999888877765
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVA 160 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~a 160 (165)
... +.+..++|.++.++.||.-+|..+
T Consensus 326 idN----~dI~~~ip~Lld~l~dp~~~~~e~ 352 (569)
T KOG1242|consen 326 IDN----PDIQKIIPTLLDALADPSCYTPEC 352 (569)
T ss_pred hcc----HHHHHHHHHHHHHhcCcccchHHH
Confidence 543 358889999999999999776654
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=96.57 E-value=0.012 Score=55.09 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=63.2
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD 154 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~ 154 (165)
-...+-..-.|..+|..-++ +.-.+.+.+.+-+.|+|+..|--|+-++|+|.. ...++.+++.|.+++.|++
T Consensus 82 ~elKKLvYLYL~~ya~~~pe-lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-------~~i~e~l~~~lkk~L~D~~ 153 (746)
T PTZ00429 82 LELKKLVYLYVLSTARLQPE-KALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-------SSVLEYTLEPLRRAVADPD 153 (746)
T ss_pred HHHHHHHHHHHHHHcccChH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHhcCCC
Confidence 34455555555555443333 445567888889999999999999999998763 2357888999999999999
Q ss_pred HHHHHHHHhcC
Q psy12576 155 TQIRVAALQCL 165 (165)
Q Consensus 155 p~VR~aA~~al 165 (165)
|-||.+|..|+
T Consensus 154 pYVRKtAalai 164 (746)
T PTZ00429 154 PYVRKTAAMGL 164 (746)
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 38
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.39 E-value=0.0079 Score=52.36 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=61.2
Q ss_pred chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
++..++|.+.+.+.+.+-..|..-+.||+.|.......+..++++.++|.++++|.-+++.||.+++++|
T Consensus 320 ~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL 389 (415)
T PF12460_consen 320 FFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETL 389 (415)
T ss_pred HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5667777777777776666888999999999999998888889999999999999999999999998764
No 39
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=96.35 E-value=0.0076 Score=36.01 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=30.7
Q ss_pred HHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 122 SFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 122 Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+++.+.+--.. .+ ..+.+...|.+++.|+.|.||.||.+.|
T Consensus 2 ~l~~iv~~dp~-ll--~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPT-LL--DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCcc-cc--chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45666653333 23 2568899999999999999999998764
No 40
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.30 E-value=0.023 Score=53.19 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHH--HHHHHhhcCCCCHHHHHHHH
Q psy12576 85 LMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFI--MEVVCEATQSPDTQIRVAAL 162 (165)
Q Consensus 85 Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~i--l~~v~~~l~D~~p~VR~aA~ 162 (165)
|-.|+..=-+++++.+++-|.+.+.+++.+.|+.|++|++.+-.- -....+.. .......+.|++|.|-.+|+
T Consensus 113 lR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-----d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl 187 (757)
T COG5096 113 LRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-----DKDLYHELGLIDILKELVADSDPIVIANAL 187 (757)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-----CHhhhhcccHHHHHHHHhhCCCchHHHHHH
Confidence 444443333567777777777777777777777777777766531 11122333 23333334477777777776
Q ss_pred hc
Q psy12576 163 QC 164 (165)
Q Consensus 163 ~a 164 (165)
.+
T Consensus 188 ~s 189 (757)
T COG5096 188 AS 189 (757)
T ss_pred HH
Confidence 54
No 41
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.30 E-value=0.021 Score=52.11 Aligned_cols=83 Identities=33% Similarity=0.418 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCc----ch---hhHH-HHHhhhc-ccCchHHHHHHHHHHHHhhcCCcch-hchHhHHHHHHHHHhhcCC
Q psy12576 83 VCLMLLSSCCEED----MV---PHIL-PFVNANI-EHADWRHRDAALMSFGAILVRPSFI-ITISERNFIMEVVCEATQS 152 (165)
Q Consensus 83 ~~Ld~la~~~~~~----i~---~~vl-~~i~~~l-~~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l~~il~~v~~~l~D 152 (165)
..|..+++++... ++ ..++ ..+..-. ..++-+.|-||+-||.--+++.... -.+.+++.+|+++|+.++.
T Consensus 153 ~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~ 232 (858)
T COG5215 153 ESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQG 232 (858)
T ss_pred HHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccC
Confidence 3477778877731 11 1222 3332222 3467889999999999877766664 3555799999999999999
Q ss_pred CCHHHHHHHHhcC
Q psy12576 153 PDTQIRVAALQCL 165 (165)
Q Consensus 153 ~~p~VR~aA~~al 165 (165)
|+..|+.||+-||
T Consensus 233 ~d~e~q~aafgCl 245 (858)
T COG5215 233 NDEELQHAAFGCL 245 (858)
T ss_pred CcHHHHHHHHHHH
Confidence 9999999999885
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.29 E-value=0.021 Score=51.12 Aligned_cols=102 Identities=21% Similarity=0.322 Sum_probs=75.2
Q ss_pred HHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc
Q psy12576 57 PILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT 135 (165)
Q Consensus 57 p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~ 135 (165)
++++..+...+. ..-..+..+|+.+-.... +.+.+...+++...+.+++...|.-++.+++.+++.......
T Consensus 41 ~~lf~~L~~~~~-------e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~ 113 (503)
T PF10508_consen 41 PVLFDCLNTSNR-------EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQ 113 (503)
T ss_pred HHHHHHHhhcCh-------HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 347777764321 112334455777655554 567899999999999999999999999999999876654222
Q ss_pred hHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 136 ISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 136 ~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.-.=+.+++.|+..+.|++..|..+|..+|
T Consensus 114 ~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L 143 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPDLSVAKAAIKAL 143 (503)
T ss_pred HhcCccHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 112377899999999999999999998764
No 43
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.09 E-value=0.1 Score=46.72 Aligned_cols=141 Identities=19% Similarity=0.181 Sum_probs=93.6
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA 81 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a 81 (165)
+++|--+.+.++|....+|+... ...|+.+ ..+++.|.+++...++|++- -+..-.+
T Consensus 212 ~~dDiLvqlnalell~~La~~~~-------------------g~~yL~~--~gi~~~L~~~l~~~~~dp~~--~~~~l~g 268 (503)
T PF10508_consen 212 DSDDILVQLNALELLSELAETPH-------------------GLQYLEQ--QGIFDKLSNLLQDSEEDPRL--SSLLLPG 268 (503)
T ss_pred cCccHHHHHHHHHHHHHHHcChh-------------------HHHHHHh--CCHHHHHHHHHhccccCCcc--cchhhhh
Confidence 34555577788898888887421 1234443 36888889988877655411 1222122
Q ss_pred H-HHHHHHHHHcCCc---chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch-hc----hHhHHHHHHHHHhhcCC
Q psy12576 82 G-VCLMLLSSCCEED---MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI-IT----ISERNFIMEVVCEATQS 152 (165)
Q Consensus 82 ~-~~Ld~la~~~~~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~-~~----~~~l~~il~~v~~~l~D 152 (165)
. .....++..-|.. .+|.++..+...+.+.|...|.+|+=+||.|+--..-+ .+ ...++.++..+......
T Consensus 269 ~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~ 348 (503)
T PF10508_consen 269 RMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS 348 (503)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC
Confidence 1 2344556654433 45888888888999999999999999999998322221 11 22456778887888888
Q ss_pred CCHHHHHHHHhcC
Q psy12576 153 PDTQIRVAALQCL 165 (165)
Q Consensus 153 ~~p~VR~aA~~al 165 (165)
....+|..+++||
T Consensus 349 ~~~~lk~r~l~al 361 (503)
T PF10508_consen 349 GSTELKLRALHAL 361 (503)
T ss_pred CchHHHHHHHHHH
Confidence 8888999998875
No 44
>KOG1820|consensus
Probab=95.91 E-value=0.13 Score=48.70 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc-
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF- 132 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~- 132 (165)
.++|.+|..+.+.. -++..+...|+|.+...++ +..++++|...+.+.+++.|.--.+.|+.-..+...
T Consensus 336 ~v~p~lld~lkekk-------~~l~d~l~~~~d~~~ns~~---l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKK-------SELRDALLKALDAILNSTP---LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred hhcchHHHHhhhcc-------HHHHHHHHHHHHHHHhccc---HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 46777777777543 5788899999999988665 555667777788899999997778888877765552
Q ss_pred hhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 133 IITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 133 ~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
...+..++.++|.++...+|-+.-||.||++|+
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~ 438 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAV 438 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHH
Confidence 233346899999999999999999999999874
No 45
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.53 E-value=0.019 Score=52.75 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=68.4
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccC-chHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHA-DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD 154 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~-dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~ 154 (165)
.++..-+.+....|.++| ++.++||++..-.|- .|.-|+.++-..-.|++..+...+ +|+..+|..|-..+.|.+
T Consensus 296 YVRnvt~ra~~vva~alg---v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l-~hl~~l~~ci~~~l~D~~ 371 (975)
T COG5181 296 YVRNVTGRAVGVVADALG---VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRL-SHLGPLLKCISKLLKDRS 371 (975)
T ss_pred HHHHHHHHHHHHHHHhhC---cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHH-hhhhhHHHHHHHHhhccc
Confidence 344555555667788888 788899998888776 899999999999999984333233 589999999999999999
Q ss_pred HHHHHHHHhcC
Q psy12576 155 TQIRVAALQCL 165 (165)
Q Consensus 155 p~VR~aA~~al 165 (165)
..||--+.++|
T Consensus 372 ~~vRi~tA~al 382 (975)
T COG5181 372 RFVRIDTANAL 382 (975)
T ss_pred eeeeehhHhHH
Confidence 99998776653
No 46
>KOG1240|consensus
Probab=95.36 E-value=0.07 Score=52.05 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=83.4
Q ss_pred HHHHH-HHhHHHHHHHHHhhccCCCC---------CcCCCchhhHHHHHHHHHHHHcCCc-chhhHHHHHhhhcccCchH
Q psy12576 46 FYAKG-ALQYLVPILTQKLTKQEELD---------DEDDWNPCKAAGVCLMLLSSCCEED-MVPHILPFVNANIEHADWR 114 (165)
Q Consensus 46 ~~~~~-~~~~l~p~ll~~l~~~~ed~---------dddew~~~~~a~~~Ld~la~~~~~~-i~~~vl~~i~~~l~~~dw~ 114 (165)
.++|+ .++.|.|++.=.-..+..|- .|-||..+-|=-..|--++-.+|.. +-..++|++.+.|++++-.
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~ 671 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA 671 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh
Confidence 46666 44566666555444433221 2337998655555555556778854 6788999999999999988
Q ss_pred HHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 115 HRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 115 ~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
.-.-|+-+|..+.+- ....+..+-.|++.+...|..|+.=||++++-
T Consensus 672 Viv~aL~~ls~Lik~--~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~ 718 (1431)
T KOG1240|consen 672 VIVSALGSLSILIKL--GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLG 718 (1431)
T ss_pred hHHHHHHHHHHHHHh--cccchHHHHHHHHhhhhheeCchHHHHHHHHH
Confidence 888888888877761 23566788999999999999999999999874
No 47
>KOG0211|consensus
Probab=95.35 E-value=0.21 Score=47.01 Aligned_cols=85 Identities=16% Similarity=0.092 Sum_probs=53.1
Q ss_pred CchhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576 75 WNPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP 153 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~ 153 (165)
...+++|+.+|-.++..+| +.-...+.|-+-....+++|.+|.+-+-++..+++-++..+ ....++|.+.....||
T Consensus 532 ~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei---~~~~Llp~~~~l~~D~ 608 (759)
T KOG0211|consen 532 YSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI---TCEDLLPVFLDLVKDP 608 (759)
T ss_pred HHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH---HHHHHhHHHHHhccCC
Confidence 3566777777878888777 22222222222222233377788888887777777666532 3566777777777788
Q ss_pred CHHHHHHHH
Q psy12576 154 DTQIRVAAL 162 (165)
Q Consensus 154 ~p~VR~aA~ 162 (165)
.|.||-.++
T Consensus 609 vanVR~nva 617 (759)
T KOG0211|consen 609 VANVRINVA 617 (759)
T ss_pred chhhhhhHH
Confidence 888777664
No 48
>KOG1967|consensus
Probab=95.28 E-value=0.11 Score=49.58 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=74.5
Q ss_pred HHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcc---hhhHHHHHhhhcccCc---hHHHHHHHH
Q psy12576 48 AKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDM---VPHILPFVNANIEHAD---WRHRDAALM 121 (165)
Q Consensus 48 ~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i---~~~vl~~i~~~l~~~d---w~~R~Aa~~ 121 (165)
+.+-+|.|+|+||+.|.-.| -.++-....||..+-...+.-+ +..++|..-.--.+.+ -..|.+|+-
T Consensus 903 llp~~~~LlPLLLq~Ls~~D-------~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALq 975 (1030)
T KOG1967|consen 903 LLPQFPMLLPLLLQALSMPD-------VIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQ 975 (1030)
T ss_pred hccchhhHHHHHHHhcCCCc-------cchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 44456788999999887432 3344444555555443333211 2233333333333333 578999999
Q ss_pred HHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 122 SFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 122 Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
+++++.+.-....+..+++.++..+.+-|.||.-.||.-|..|
T Consensus 976 cL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 976 CLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 9999999666656778999999999999999999999988654
No 49
>KOG0213|consensus
Probab=95.16 E-value=0.066 Score=50.22 Aligned_cols=125 Identities=12% Similarity=0.179 Sum_probs=93.0
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA 81 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a 81 (165)
|+.++.|.-.+|.+.-+||+. .|+..+ ..=|-.+.--|+++|..-. =..+++|
T Consensus 893 knrheKVqen~IdLvg~Iadr----------------gpE~v~----aREWMRIcfeLlelLkahk-------K~iRRaa 945 (1172)
T KOG0213|consen 893 KNRHEKVQENCIDLVGTIADR----------------GPEYVS----AREWMRICFELLELLKAHK-------KEIRRAA 945 (1172)
T ss_pred hhhHHHHHHHHHHHHHHHHhc----------------CcccCC----HHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 567888999999999999984 333111 1134456667777777421 1568899
Q ss_pred HHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576 82 GVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVA 160 (165)
Q Consensus 82 ~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~a 160 (165)
...+..+|.++|. +|+-.+ -+|+..++-+.|-...+|++.++|-|+.+. ++|.+.+--.-|+.-|++.
T Consensus 946 ~nTfG~IakaIGPqdVLatL----lnnLkvqeRq~RvcTtvaIaIVaE~c~pFt-------VLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen 946 VNTFGYIAKAIGPQDVLATL----LNNLKVQERQNRVCTTVAIAIVAETCGPFT-------VLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred HhhhhHHHHhcCHHHHHHHH----HhcchHHHHHhchhhhhhhhhhhhhcCchh-------hhHHHHhhccCchhHHHHh
Confidence 9999999999994 455544 468999999999999999999999999863 3677777777888888876
Q ss_pred HHhc
Q psy12576 161 ALQC 164 (165)
Q Consensus 161 A~~a 164 (165)
-+-+
T Consensus 1015 VLka 1018 (1172)
T KOG0213|consen 1015 VLKA 1018 (1172)
T ss_pred HHHH
Confidence 5543
No 50
>KOG4413|consensus
Probab=94.95 E-value=0.24 Score=42.73 Aligned_cols=118 Identities=18% Similarity=0.241 Sum_probs=84.8
Q ss_pred HHHHHHh-HHHHHHHHHhhccCCCCC-cCC--CchhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHH
Q psy12576 47 YAKGALQ-YLVPILTQKLTKQEELDD-EDD--WNPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALM 121 (165)
Q Consensus 47 ~~~~~~~-~l~p~ll~~l~~~~ed~d-dde--w~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~ 121 (165)
-++++++ +=+|.+..-|.-.++-.- +.| -....---.||.+|=+... -++.|.++|-++..+.+++-..+--++.
T Consensus 25 SVkealdlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLack 104 (524)
T KOG4413|consen 25 SVKEALDLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACK 104 (524)
T ss_pred HHHHhcccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHh
Confidence 3555555 336777777765332211 011 1122335678999988765 6899999999999999999999999999
Q ss_pred HHHHhhcCCcchhchHh----HHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 122 SFGAILVRPSFIITISE----RNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 122 Alg~i~EG~~~~~~~~~----l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.+|+|.|.|+.+-.... -..|++.++..+...+-.|-.||...
T Consensus 105 qigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAies 151 (524)
T KOG4413|consen 105 QIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIES 151 (524)
T ss_pred hhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999996422222 25788888888889999999998753
No 51
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.94 E-value=0.5 Score=39.83 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 112 DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 112 dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+....-||+-+-|-++--+........+...+|.+...|..++..||-||-++|
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEai 252 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAI 252 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 467889999999999987777545567899999999999999999999998764
No 52
>KOG2259|consensus
Probab=94.89 E-value=0.32 Score=45.13 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=67.8
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT 155 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p 155 (165)
.++++|-..+-.||+.-|+ .-...+.|+...|+++.--.|.=|+.++-.|+.-. ...+..|+.++..|.|..+
T Consensus 388 EVR~AAV~Sl~~La~ssP~-FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~s~ 460 (823)
T KOG2259|consen 388 EVRRAAVASLCSLATSSPG-FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL------AIREEQLRQILESLEDRSV 460 (823)
T ss_pred HHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhcCH
Confidence 6688999999999998885 44568889999999999999999999999998541 2456778888999999999
Q ss_pred HHHHHHHh
Q psy12576 156 QIRVAALQ 163 (165)
Q Consensus 156 ~VR~aA~~ 163 (165)
.||.++-+
T Consensus 461 dvRe~l~e 468 (823)
T KOG2259|consen 461 DVREALRE 468 (823)
T ss_pred HHHHHHHH
Confidence 99998754
No 53
>KOG0166|consensus
Probab=94.84 E-value=0.073 Score=47.85 Aligned_cols=105 Identities=15% Similarity=0.111 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc----chhhHHHHHhhhcc-cCchHHHHHHHHHHHHhhc
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED----MVPHILPFVNANIE-HADWRHRDAALMSFGAILV 128 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~----i~~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~E 128 (165)
.++|.|..+|...+ -+....|..++..++..-... +-..++|.+...+. ++.-..|+.|+++++.|.-
T Consensus 279 gvv~~LV~lL~~~~-------~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 279 GVVPRLVDLLGHSS-------PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred cchHHHHHHHcCCC-------cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 56777778777543 333334444433332222211 33557788888887 6667799999999999999
Q ss_pred CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
|..+.+..-.-..++|.+++.++..+-+.|.-|+-|+
T Consensus 352 G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaI 388 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAI 388 (514)
T ss_pred CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHH
Confidence 9998666555678999999999999999999887653
No 54
>KOG1943|consensus
Probab=94.82 E-value=0.14 Score=49.45 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHcCCcchhhHHHHHhhhc----ccCchHHHHHHHHHHHHhh-cCCcchhchHhHHHHHHHHHhhcCC
Q psy12576 78 CKAAGVCLMLLSSCCEEDMVPHILPFVNANI----EHADWRHRDAALMSFGAIL-VRPSFIITISERNFIMEVVCEATQS 152 (165)
Q Consensus 78 ~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l----~~~dw~~R~Aa~~Alg~i~-EG~~~~~~~~~l~~il~~v~~~l~D 152 (165)
+-+|++.+.+++..+|..+...++.-+-..+ .+..|+ .|++||+=++ .|.- ....++.++|.|.++|.-
T Consensus 358 rWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~rGlL---lps~l~dVvplI~kaL~Y 431 (1133)
T KOG1943|consen 358 RWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALRGLL---LPSLLEDVVPLILKALHY 431 (1133)
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhcCCc---chHHHHHHHHHHHHHhhh
Confidence 4456677779999999545555444443322 345677 9999999887 4553 445689999999999963
Q ss_pred CC--------HHHHHHHHhc
Q psy12576 153 PD--------TQIRVAALQC 164 (165)
Q Consensus 153 ~~--------p~VR~aA~~a 164 (165)
.+ ..||.|||+.
T Consensus 432 d~~~G~~s~G~~VRDaAcY~ 451 (1133)
T KOG1943|consen 432 DVRRGQHSVGQHVRDAACYV 451 (1133)
T ss_pred hhhhcccccccchHHHHHHH
Confidence 33 5699999874
No 55
>KOG0212|consensus
Probab=94.78 E-value=0.039 Score=50.02 Aligned_cols=86 Identities=21% Similarity=0.117 Sum_probs=71.4
Q ss_pred CchhhHHHHHHHHHHHHcCCcc---hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDM---VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i---~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
-|.++.+...|-..+.++|.+. +..++|-|-..+.++|-+.|.=|+-++..|+-++...+. .+-+.|..++|+...
T Consensus 57 ~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~-~~Fn~iFdvL~klsa 135 (675)
T KOG0212|consen 57 ANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL-VYFNEIFDVLCKLSA 135 (675)
T ss_pred cccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc-cchHHHHHHHHHHhc
Confidence 4677788888888888899433 344445556689999999999999999999999988655 489999999999999
Q ss_pred CCCHHHHHHH
Q psy12576 152 SPDTQIRVAA 161 (165)
Q Consensus 152 D~~p~VR~aA 161 (165)
|+++.||.+|
T Consensus 136 Dsd~~V~~~a 145 (675)
T KOG0212|consen 136 DSDQNVRGGA 145 (675)
T ss_pred CCccccccHH
Confidence 9999999987
No 56
>KOG2081|consensus
Probab=94.74 E-value=0.81 Score=41.49 Aligned_cols=142 Identities=16% Similarity=0.259 Sum_probs=86.8
Q ss_pred CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccC-CCC---CcCCC-ch
Q psy12576 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQE-ELD---DEDDW-NP 77 (165)
Q Consensus 3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~-ed~---dddew-~~ 77 (165)
+.+.+++.-.+-||-.+.|.-.-. ... ......+.+..+++..+..-..... .++ +.++. ..
T Consensus 302 h~~~evie~SF~fW~~lse~l~~~--~~~-----------~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~f 368 (559)
T KOG2081|consen 302 HNDTEVIEASFNFWYSLSEELTLT--DDD-----------EALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEF 368 (559)
T ss_pred CCchhhhhhhHHhhhhhHHHHhcc--ccH-----------HHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHH
Confidence 455678888889999999742110 000 1112345566678888888777544 111 11222 22
Q ss_pred hhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576 78 CKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQ 156 (165)
Q Consensus 78 ~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~ 156 (165)
+...+..|--++-.+| ++.+..+.--+.+ .++.|..-+|++..+.+++--.+....+ .++.+|..+|+.=. ...
T Consensus 369 R~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~-i~pevl~~i~nlp~--Q~~ 443 (559)
T KOG2081|consen 369 RLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENT-IMPEVLKLICNLPE--QAP 443 (559)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccc-hHHHHHHHHhCCcc--chh
Confidence 3333444555566677 5666666655555 6788999999999999999877764443 46666666665432 223
Q ss_pred HHHHHH
Q psy12576 157 IRVAAL 162 (165)
Q Consensus 157 VR~aA~ 162 (165)
+|++++
T Consensus 444 ~~~ts~ 449 (559)
T KOG2081|consen 444 LRYTSI 449 (559)
T ss_pred HHHHHH
Confidence 998876
No 57
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.72 E-value=0.13 Score=43.94 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=61.5
Q ss_pred HHHHHHhHHHHHHHHHhhccCCC---CCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCc--hHHHHH
Q psy12576 47 YAKGALQYLVPILTQKLTKQEEL---DDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHAD--WRHRDA 118 (165)
Q Consensus 47 ~~~~~~~~l~p~ll~~l~~~~ed---~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~d--w~~R~A 118 (165)
++..++..|+|.+++++....=. +.++.|..+..|+..|..+...++. .+.|.++..+.+.+.++. ....++
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 46667778999999988854311 1456799999999999999999994 477888866666666543 344899
Q ss_pred HHHHHHHhh
Q psy12576 119 ALMSFGAIL 127 (165)
Q Consensus 119 a~~Alg~i~ 127 (165)
|+.+|++++
T Consensus 331 Ai~GL~~lG 339 (343)
T cd08050 331 AIVGLSALG 339 (343)
T ss_pred HHHHHHHhC
Confidence 999999885
No 58
>KOG1967|consensus
Probab=94.66 E-value=0.24 Score=47.27 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=79.6
Q ss_pred HHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcc----hhhHHHHHhhhcccCchHHHHHHHHHH
Q psy12576 48 AKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDM----VPHILPFVNANIEHADWRHRDAALMSF 123 (165)
Q Consensus 48 ~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i----~~~vl~~i~~~l~~~dw~~R~Aa~~Al 123 (165)
-.+.+..++|.+.+....++.+ ....=..+|..+-.++|..+ +|-++|.+-+.++=+|.-.|-..+-.|
T Consensus 861 kQRfF~~ivP~l~~~~~t~~~~-------~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i 933 (1030)
T KOG1967|consen 861 KQRFFCDIVPILVSKFETAPGS-------QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTI 933 (1030)
T ss_pred HHHHHHhhHHHHHHHhccCCcc-------chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhh
Confidence 3336778999999988854421 11111233444444666443 466889999999999999998888888
Q ss_pred HHhhcCCcchhchHhHHHHHHHHHhhcCCCC---HHHHHHHHhcC
Q psy12576 124 GAILVRPSFIITISERNFIMEVVCEATQSPD---TQIRVAALQCL 165 (165)
Q Consensus 124 g~i~EG~~~~~~~~~l~~il~~v~~~l~D~~---p~VR~aA~~al 165 (165)
--...--.. ....|++.++|..+..-.|++ ..||..|++||
T Consensus 934 ~~~l~~~~t-L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL 977 (1030)
T KOG1967|consen 934 PMLLTESET-LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCL 977 (1030)
T ss_pred hHHHHhccc-cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHH
Confidence 877654444 455689999999999988877 89999999996
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.59 E-value=0.33 Score=42.27 Aligned_cols=95 Identities=13% Similarity=0.176 Sum_probs=71.0
Q ss_pred HHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcc----hhhHHHHHhhhcccCchHHHHHHHHH
Q psy12576 47 YAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDM----VPHILPFVNANIEHADWRHRDAALMS 122 (165)
Q Consensus 47 ~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i----~~~vl~~i~~~l~~~dw~~R~Aa~~A 122 (165)
|-.+.+..++|.+++.....++ + ....-..+|..+-.++|..+ ++.++|.+-+.+..+|+..|.+++-+
T Consensus 316 ykQR~F~~~~p~L~~~~~~~~~-----~--~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~t 388 (415)
T PF12460_consen 316 YKQRFFTQVLPKLLEGFKEADD-----E--IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLET 388 (415)
T ss_pred HhHHHHHHHHHHHHHHHhhcCh-----h--hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4444777888888877665431 1 23334556666677777554 46799999999999999999999999
Q ss_pred HHHhhcCCcchhchHhHHHHHHHHHhh
Q psy12576 123 FGAILVRPSFIITISERNFIMEVVCEA 149 (165)
Q Consensus 123 lg~i~EG~~~~~~~~~l~~il~~v~~~ 149 (165)
|-.+.+.-.+ ....|++.++|.+++.
T Consensus 389 L~~~l~~~~~-~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 389 LKMILEEAPE-LISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHcCHH-HHHHHHHHHHHHHHhc
Confidence 9999987755 4556999999988763
No 60
>KOG1824|consensus
Probab=94.56 E-value=0.71 Score=44.53 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhc---ccCchHHHHHHHHHHHHhh
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANI---EHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l---~~~dw~~R~Aa~~Alg~i~ 127 (165)
.++..|+..|.... ..+.-+-.-+||..++...|. .=++.++|++.++. +..+=..|+..+-||++.+
T Consensus 212 ~li~~Ll~~L~~~~------q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 212 ELIEHLLKGLSNRT------QMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFL 285 (1233)
T ss_pred HHHHHHHhccCCCC------chHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 45555555554321 223345567899999888884 34566667776666 6677789999999999999
Q ss_pred cCCcchhchHhHHHHHHHHHhhcC-CCC
Q psy12576 128 VRPSFIITISERNFIMEVVCEATQ-SPD 154 (165)
Q Consensus 128 EG~~~~~~~~~l~~il~~v~~~l~-D~~ 154 (165)
+-|...+. ++.+.|++.+++.+. |||
T Consensus 286 ~rcp~ei~-p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 286 RRCPKEIL-PHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred HhChhhhc-ccchHHHHHHHHHhccCCC
Confidence 99998766 589999999999987 887
No 61
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.53 E-value=0.13 Score=47.38 Aligned_cols=121 Identities=12% Similarity=0.226 Sum_probs=90.0
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHH-HHHhHHHHHHHHHhhccCCCCCcCCC--chh
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAK-GALQYLVPILTQKLTKQEELDDEDDW--NPC 78 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~l~p~ll~~l~~~~ed~dddew--~~~ 78 (165)
++.++.|....|.|.-+||.. .|+ |+. +-|-.+.--|+.+|.. | ..+
T Consensus 698 rnkh~Kv~~nti~lvg~I~~~----------------~pe-----yi~~rEWMRIcfeLvd~Lks---------~nKeiR 747 (975)
T COG5181 698 RNKHQKVVANTIALVGTICMN----------------SPE-----YIGVREWMRICFELVDSLKS---------WNKEIR 747 (975)
T ss_pred hhhhHHHhhhHHHHHHHHHhc----------------Ccc-----cCCHHHHHHHHHHHHHHHHH---------hhHHHH
Confidence 567788888899999999974 232 111 1344456666677663 6 457
Q ss_pred hHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576 79 KAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI 157 (165)
Q Consensus 79 ~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~V 157 (165)
++|...+..+|.++|. +++..+| +|+..++-+.|-...+|+|.++|-|+.+. ++|.+..--..|+.-|
T Consensus 748 R~A~~tfG~Is~aiGPqdvL~~Ll----nnLkvqeRq~RvctsvaI~iVae~cgpfs-------VlP~lm~dY~TPe~nV 816 (975)
T COG5181 748 RNATETFGCISRAIGPQDVLDILL----NNLKVQERQQRVCTSVAISIVAEYCGPFS-------VLPTLMSDYETPEANV 816 (975)
T ss_pred HhhhhhhhhHHhhcCHHHHHHHHH----hcchHHHHHhhhhhhhhhhhhHhhcCchh-------hHHHHHhcccCchhHH
Confidence 8999999999999994 5555444 68999999999999999999999999852 3677777777888888
Q ss_pred HHHHHh
Q psy12576 158 RVAALQ 163 (165)
Q Consensus 158 R~aA~~ 163 (165)
++.-+-
T Consensus 817 QnGvLk 822 (975)
T COG5181 817 QNGVLK 822 (975)
T ss_pred HHhHHH
Confidence 876543
No 62
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.50 E-value=0.21 Score=51.62 Aligned_cols=104 Identities=13% Similarity=0.038 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---ch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MV-PHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
..+|.|+++|...+ -+..+.|...|..|+..-.+. |+ .-.+|.+.+.+.+++.+.|+.|++|+|.++-+
T Consensus 446 ggIp~LV~LL~s~s-------~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~ 518 (2102)
T PLN03200 446 EGVQLLISLLGLSS-------EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH 518 (2102)
T ss_pred CcHHHHHHHHcCCC-------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 35788888888532 355677777777776533321 22 23556666677788999999999999999975
Q ss_pred CcchhchH-hHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITIS-ERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~-~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
... .... ....++|.+++.|.+.++++|..|..+|
T Consensus 519 ~~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL 554 (2102)
T PLN03200 519 SED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTL 554 (2102)
T ss_pred cHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 332 2211 1246888899999999999999887654
No 63
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.38 E-value=0.27 Score=43.15 Aligned_cols=52 Identities=29% Similarity=0.305 Sum_probs=37.4
Q ss_pred HHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 103 FVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 103 ~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.+.+.++++++..|.+|+-++|.+...-. ++.+...+.|++|.||.+|..+|
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~~a-----------~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRRLS-----------ESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccccc-----------hHHHHHHHcCCCHHHHHHHHHHH
Confidence 44445568889999999999988774321 23344668899999999998653
No 64
>KOG1248|consensus
Probab=94.03 E-value=1.1 Score=43.96 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=79.0
Q ss_pred HHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHH-----HHcC-Cc---chhhHHHHHhhhcccCchHHHHHHH
Q psy12576 50 GALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLS-----SCCE-ED---MVPHILPFVNANIEHADWRHRDAAL 120 (165)
Q Consensus 50 ~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la-----~~~~-~~---i~~~vl~~i~~~l~~~dw~~R~Aa~ 120 (165)
...+.++|.++=.+...+ -..++.|.+||-.|. ...| +. ++..+++.|..++.....+.+-..+
T Consensus 734 ~~i~k~I~EvIL~~Ke~n-------~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~I 806 (1176)
T KOG1248|consen 734 DLIPKLIPEVILSLKEVN-------VKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDI 806 (1176)
T ss_pred HHHHHHHHHHHHhccccc-------HHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 344556665544442211 244677888888876 3345 23 7778888888898888888887779
Q ss_pred HHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 121 ~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
+|++.|+---...+....++.++.+||-.+....+.||.||..
T Consensus 807 vai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~ 849 (1176)
T KOG1248|consen 807 VAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIG 849 (1176)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999544555556689999999999999999999999974
No 65
>KOG1248|consensus
Probab=94.01 E-value=1.5 Score=42.96 Aligned_cols=81 Identities=6% Similarity=0.058 Sum_probs=67.5
Q ss_pred HHHHHHHHH----cCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHH
Q psy12576 83 VCLMLLSSC----CEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIR 158 (165)
Q Consensus 83 ~~Ld~la~~----~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR 158 (165)
.++..+.+- +++..++.++.+|.-+|.+.....|+||+-.+....-+..+....++++.+||.++..+.|..-.||
T Consensus 807 vai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r 886 (1176)
T KOG1248|consen 807 VAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVR 886 (1176)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHH
Confidence 344444443 3346789999999999999999999999999999998888877888999999999999999999888
Q ss_pred HHHHh
Q psy12576 159 VAALQ 163 (165)
Q Consensus 159 ~aA~~ 163 (165)
.+..+
T Consensus 887 ~Kvr~ 891 (1176)
T KOG1248|consen 887 KKVRL 891 (1176)
T ss_pred HHHHH
Confidence 87643
No 66
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=93.81 E-value=0.51 Score=37.07 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=64.0
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHH-cCCc---chhhHHHHHhhhcccCchHHHHHHHHHHHHh--
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSC-CEED---MVPHILPFVNANIEHADWRHRDAALMSFGAI-- 126 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~-~~~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i-- 126 (165)
+.++|+.++-|.+.++. - .-.|.+...-|-.. -+++ ++|.+++-+.+.+++.|.....+++.+|..+
T Consensus 37 ~~~Lpif~dGL~Et~~P------y-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHP------Y-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhHHHHHHhhhhccCcc------H-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 57899999999965421 1 23344444444444 4455 4566777788999999999999999999999
Q ss_pred -hcCCcchhchHhHHHHHHHHH
Q psy12576 127 -LVRPSFIITISERNFIMEVVC 147 (165)
Q Consensus 127 -~EG~~~~~~~~~l~~il~~v~ 147 (165)
.++.++. +.+|..+++|.+-
T Consensus 110 ~~~~vG~a-LvPyyrqLLp~ln 130 (183)
T PF10274_consen 110 SSDMVGEA-LVPYYRQLLPVLN 130 (183)
T ss_pred hhhhhhHH-HHHHHHHHHHHHH
Confidence 8888875 5578999999754
No 67
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.81 E-value=1.6 Score=33.53 Aligned_cols=70 Identities=17% Similarity=0.044 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
.+.+|.++..|.+. ++..++.|..+|..|...---++=+.++..+-..+.++|+..|..|..+|.-++.-
T Consensus 24 e~~~~~l~~~L~D~-------~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 24 EPYLPNLYKCLRDE-------DPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HhHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 34566677777632 36888888888888866533345566655566788999999999999999988865
No 68
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.77 E-value=0.3 Score=40.67 Aligned_cols=86 Identities=22% Similarity=0.183 Sum_probs=53.4
Q ss_pred HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchh
Q psy12576 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFII 134 (165)
Q Consensus 55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~ 134 (165)
.++.+++.+... +|..+..|... ++..=....+|.+.+.+.++++..|..|+.++|.+..-
T Consensus 44 ~~~~~~~~l~~~-------~~~vr~~aa~~-------l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~----- 104 (335)
T COG1413 44 AADELLKLLEDE-------DLLVRLSAAVA-------LGELGSEEAVPLLRELLSDEDPRVRDAAADALGELGDP----- 104 (335)
T ss_pred hHHHHHHHHcCC-------CHHHHHHHHHH-------HhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-----
Confidence 445555555422 36666666544 23222345556666777888889999888888876532
Q ss_pred chHhHHHHHHHHHhhcC-CCCHHHHHHHHhcC
Q psy12576 135 TISERNFIMEVVCEATQ-SPDTQIRVAALQCL 165 (165)
Q Consensus 135 ~~~~l~~il~~v~~~l~-D~~p~VR~aA~~al 165 (165)
..++.+.+.+. |++..||.+|..+|
T Consensus 105 ------~a~~~li~~l~~d~~~~vR~~aa~aL 130 (335)
T COG1413 105 ------EAVPPLVELLENDENEGVRAAAARAL 130 (335)
T ss_pred ------hHHHHHHHHHHcCCcHhHHHHHHHHH
Confidence 22344455555 89999998887664
No 69
>KOG0211|consensus
Probab=93.75 E-value=0.35 Score=45.61 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=70.3
Q ss_pred CCchhhHHHHHHHHHHHHcCCcc-hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC
Q psy12576 74 DWNPCKAAGVCLMLLSSCCEEDM-VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS 152 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~~~~i-~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D 152 (165)
.|-.++.-.-||..+|..+|..+ -..++|++.....++.+-.|-.+...|--|.-+........+ +.|......+|
T Consensus 570 ~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~---v~pll~~L~~d 646 (759)
T KOG0211|consen 570 NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEE---VLPLLETLSSD 646 (759)
T ss_pred ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHH---HHHHHHHhccC
Confidence 47788888899999999999655 477889999999999999999999999999988776544433 44443334459
Q ss_pred CCHHHHHHHHhc
Q psy12576 153 PDTQIRVAALQC 164 (165)
Q Consensus 153 ~~p~VR~aA~~a 164 (165)
++.-||+.|..|
T Consensus 647 ~~~dvr~~a~~a 658 (759)
T KOG0211|consen 647 QELDVRYRAILA 658 (759)
T ss_pred cccchhHHHHHH
Confidence 999999999765
No 70
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.54 E-value=0.3 Score=35.33 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=44.6
Q ss_pred hhhHHHHHhhhcccCc----hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 97 VPHILPFVNANIEHAD----WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~d----w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.|.++.++.+.++... -....+++-++++...-....... -..+++.+++.+++|+- |.+|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~--~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELII--NSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHH--SSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhc--cHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 5556666655554433 677889999999988855443222 24599999999965554 99999986
No 71
>KOG1517|consensus
Probab=93.47 E-value=0.24 Score=48.05 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcC-C--c-chhhHHHHHhhhccc-CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576 80 AAGVCLMLLSSCCE-E--D-MVPHILPFVNANIEH-ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD 154 (165)
Q Consensus 80 ~a~~~Ld~la~~~~-~--~-i~~~vl~~i~~~l~~-~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~ 154 (165)
.|+-.|..+-..++ . . +-..++...-+.+.+ ++|-.|...+++||-+=+.-....-.-.+......+...|.||-
T Consensus 576 maAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~v 655 (1387)
T KOG1517|consen 576 MAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPV 655 (1387)
T ss_pred HHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCcc
Confidence 34445555544444 1 2 335677777777877 48999999999999999877765444457778888999999999
Q ss_pred HHHHHHHHhcC
Q psy12576 155 TQIRVAALQCL 165 (165)
Q Consensus 155 p~VR~aA~~al 165 (165)
|.||.||.+||
T Consensus 656 pEVRaAAVFAL 666 (1387)
T KOG1517|consen 656 PEVRAAAVFAL 666 (1387)
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 72
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.12 E-value=0.23 Score=43.63 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=41.2
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
-+...+.+...+.++++..|.+++-++|..... -.+.+.+.++|++|.||.+|+.+|
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~------------~~~~L~~~L~d~d~~Vra~A~raL 171 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD------------PGPALEAALTHEDALVRAAALRAL 171 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhccC------------hHHHHHHHhcCCCHHHHHHHHHHH
Confidence 344555566677889999999888777773322 234566778899999999998764
No 73
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.04 E-value=0.29 Score=40.81 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=45.5
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
|...+++.+.+.+++...|.+|.-++|.+..+. ..+.+.+.+.+.|++..||.++..+|
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 444555666777777888889988888888654 55667788889999999999988764
No 74
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.00 E-value=0.85 Score=47.36 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=76.2
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-Cc---chh-hHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-ED---MVP-HILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~~---i~~-~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
...+|.++.+|...+ ....+.++.+|..++.... +. ++. -++|-+-+.+.+++-..++.|+.||+.++
T Consensus 650 agaIpPLV~LLss~~-------~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl 722 (2102)
T PLN03200 650 DEIINPCIKLLTNNT-------EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLL 722 (2102)
T ss_pred cCCHHHHHHHHhcCC-------hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 367888889888643 3467888899999886433 22 222 24444556677888899999999999999
Q ss_pred cCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 128 VRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 128 EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......- ---..+++.+.+.+++.++++|..|..+|
T Consensus 723 ~~~e~~~e-i~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 723 SDPEVAAE-ALAEDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred cCchHHHH-HHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 87754211 11356688899999999999999998764
No 75
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.99 E-value=1.6 Score=36.78 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=71.4
Q ss_pred cHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC--C---cchhhHHHHHhhhccc--CchHHH
Q psy12576 44 SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE--E---DMVPHILPFVNANIEH--ADWRHR 116 (165)
Q Consensus 44 ~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~--~---~i~~~vl~~i~~~l~~--~dw~~R 116 (165)
...++.+....|+..++..+.+... .-...|..++..++..+| . .++..+.|.+.+.+.+ .....|
T Consensus 76 ~~d~v~~~~~tL~~~~~k~lkkg~~-------~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R 148 (309)
T PF05004_consen 76 LPDFVEDRRETLLDALLKSLKKGKS-------EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKAR 148 (309)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCCH-------HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHH
Confidence 3346666667788888888876441 235678888999999977 2 5777788887777664 346788
Q ss_pred HHHHHHHHHhhc-CCcchhchHhHHHHHH----HHHhhcC--------CCCHHHHHHHHhc
Q psy12576 117 DAALMSFGAILV-RPSFIITISERNFIME----VVCEATQ--------SPDTQIRVAALQC 164 (165)
Q Consensus 117 ~Aa~~Alg~i~E-G~~~~~~~~~l~~il~----~v~~~l~--------D~~p~VR~aA~~a 164 (165)
-+++.|||.+.- |+.+..-...+-..|. ..+.... .+++.|..||+++
T Consensus 149 ~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 149 AACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 888889998765 4443211111113344 2221111 2247899998875
No 76
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.88 E-value=0.3 Score=45.93 Aligned_cols=99 Identities=11% Similarity=0.150 Sum_probs=75.6
Q ss_pred HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCc
Q psy12576 52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPS 131 (165)
Q Consensus 52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~ 131 (165)
++.|+|-+++.++..| -...|-=---|..++..-| +..-...+.+.+-++|+|...|-.|+-++|.+-++
T Consensus 53 mssLf~dViK~~~trd-------~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~-- 122 (757)
T COG5096 53 MSSLFPDVIKNVATRD-------VELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVK-- 122 (757)
T ss_pred hHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChH--
Confidence 3567777777777322 3444544455666676666 34455678899999999999999999999988642
Q ss_pred chhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 132 FIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 132 ~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.-++.+++.|.+.+.|+||.||..|..|+
T Consensus 123 -----el~~~~~~~ik~~l~d~~ayVRk~Aalav 151 (757)
T COG5096 123 -----ELLGNIIDPIKKLLTDPHAYVRKTAALAV 151 (757)
T ss_pred -----HHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 35789999999999999999999999875
No 77
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.83 E-value=0.14 Score=34.35 Aligned_cols=50 Identities=28% Similarity=0.301 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC-CCCHHHHHHHHhcC
Q psy12576 115 HRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ-SPDTQIRVAALQCL 165 (165)
Q Consensus 115 ~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA~~al 165 (165)
.++||++|+|.|+-...-...- .-..+++.+++... +|...||-.|+++|
T Consensus 3 ~lKaaLWaighIgss~~G~~lL-~~~~iv~~iv~~a~~s~v~siRGT~fy~L 53 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLL-DESDIVEDIVKIAENSPVLSIRGTCFYVL 53 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHH-hhcCHHHHHHHHHHhCCccchHHHHHHHH
Confidence 5789999999997543332111 12368888888875 99999999999875
No 78
>KOG1240|consensus
Probab=92.73 E-value=0.59 Score=45.96 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=59.1
Q ss_pred chhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576 76 NPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD 154 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~ 154 (165)
.+.++=.+.|-.|--.+| .+--..+|+++..+|.+.||+.|-|=+=.+.-++-..+. + .-=+.++|.+.++|.|++
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--r-s~seyllPLl~Q~ltD~E 669 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--R-SVSEYLLPLLQQGLTDGE 669 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--e-eHHHHHHHHHHHhccCcc
Confidence 444454455555555667 355567788888899999999996654444422222221 1 024678999999999999
Q ss_pred HHHHHHHHhcC
Q psy12576 155 TQIRVAALQCL 165 (165)
Q Consensus 155 p~VR~aA~~al 165 (165)
+.|-..|+.||
T Consensus 670 E~Viv~aL~~l 680 (1431)
T KOG1240|consen 670 EAVIVSALGSL 680 (1431)
T ss_pred hhhHHHHHHHH
Confidence 99999999885
No 79
>KOG1992|consensus
Probab=92.68 E-value=1.1 Score=42.65 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=63.1
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc------cCchHHHHHHHHHHHHhh-------cCCcc-hhchHhHH
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE------HADWRHRDAALMSFGAIL-------VRPSF-IITISERN 140 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~------~~dw~~R~Aa~~Alg~i~-------EG~~~-~~~~~~l~ 140 (165)
-|-+++|..-+--|...+...+.+.+-..++..++ |.||+.++.++.-+-+++ +||.. ..+-.-.+
T Consensus 376 dTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~ 455 (960)
T KOG1992|consen 376 DTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVD 455 (960)
T ss_pred chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHH
Confidence 36678888888888888887888888888888887 789999999987776665 46654 12222344
Q ss_pred HHHHHHHhhcC----CCCHHHHHHHH
Q psy12576 141 FIMEVVCEATQ----SPDTQIRVAAL 162 (165)
Q Consensus 141 ~il~~v~~~l~----D~~p~VR~aA~ 162 (165)
.+...|.+.|. .++|.+|.+|+
T Consensus 456 Ff~~~ilp~L~s~~vn~~pilka~aI 481 (960)
T KOG1992|consen 456 FFANQILPDLLSPNVNEFPILKADAI 481 (960)
T ss_pred HHHHHhhHHhccCccccccchhhccc
Confidence 45555555554 57788888774
No 80
>KOG2933|consensus
Probab=92.49 E-value=0.3 Score=41.45 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=69.1
Q ss_pred cCCCchhhHHHHHHHHHHHHcCCc---chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHh
Q psy12576 72 EDDWNPCKAAGVCLMLLSSCCEED---MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCE 148 (165)
Q Consensus 72 ddew~~~~~a~~~Ld~la~~~~~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~ 148 (165)
+++|...--+...|.+|+..=++. .+.-+..+|.+.+.+..-..-+||+++++.|..--...+.. +++..+-.++.
T Consensus 99 s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ 177 (334)
T KOG2933|consen 99 SDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-ELDDLVTQLLH 177 (334)
T ss_pred hHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 346987777778888887766643 34456677888888888888899999999999877665544 67777777777
Q ss_pred hcCCCCHHHHHHHHhcC
Q psy12576 149 ATQSPDTQIRVAALQCL 165 (165)
Q Consensus 149 ~l~D~~p~VR~aA~~al 165 (165)
...+.+--||..|--||
T Consensus 178 ka~~dnrFvreda~kAL 194 (334)
T KOG2933|consen 178 KASQDNRFVREDAEKAL 194 (334)
T ss_pred hhcccchHHHHHHHHHH
Confidence 77777778887775543
No 81
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=92.48 E-value=0.37 Score=37.86 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=58.1
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC-CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVR-PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG-~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.+.||..-+.+...+-.||.-|..++--+++- ..++ ..+-+++++..+-++|+..++.|..+++.+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~k-ilPvlPqLI~plk~AL~tr~~~V~~~~L~~L 104 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEK-ILPVLPQLIIPLKRALNTRDPEVFCATLKAL 104 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 567888888899888888999999999988876 4444 4468999999999999999999999999875
No 82
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.44 E-value=0.44 Score=36.40 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=56.7
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC-HHHHHHHHhcC
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD-TQIRVAALQCL 165 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~-p~VR~aA~~al 165 (165)
..+......+.+.++|.++..|.+|+.-++++.+-|+...+..+-...+..+.+.++.++ +.++.+|+.+|
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L 92 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITL 92 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356777888999999999999999999999999988655565567888888888887444 56677777653
No 83
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=92.39 E-value=0.4 Score=37.29 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=46.1
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
|.+.+++.+.+.|++...|++|+.++-... .....+.++..+...+.|++..||.|..-+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~-------~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~ 178 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYI-------RKEDFDELLEIIEALLKDEEYYVQKAIGWA 178 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHG-------GGCHHHHHHHHHHHCTTGS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-------HhcCHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 778889999999998777888877653222 224688899988888999999999997544
No 84
>KOG4653|consensus
Probab=92.05 E-value=2.4 Score=40.57 Aligned_cols=158 Identities=13% Similarity=0.065 Sum_probs=88.1
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHh-hh-cC---CCCCcc--cHH----------HHHHHHhHHHHHHHHHhh
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEA-AD-FG---RPPTRT--SRF----------YAKGALQYLVPILTQKLT 64 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~-~~-~g---~~~~~~--~~~----------~~~~~~~~l~p~ll~~l~ 64 (165)
+++|.-|-+.||--..++||.+.+-+.+.... +. .. ++..|- --. .+-++...|+...|..+.
T Consensus 778 kdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvr 857 (982)
T KOG4653|consen 778 KDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVR 857 (982)
T ss_pred cccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcC
Confidence 44556677889999999999877766663221 11 11 111111 000 122222333333333333
Q ss_pred ccCCCCCcCCCch--hhHHHHHHHHHHHHcCCcchhhHHHHH-hhhcccCchHHHHHHHHHHHHhhcCCcchhchHh---
Q psy12576 65 KQEELDDEDDWNP--CKAAGVCLMLLSSCCEEDMVPHILPFV-NANIEHADWRHRDAALMSFGAILVRPSFIITISE--- 138 (165)
Q Consensus 65 ~~~ed~dddew~~--~~~a~~~Ld~la~~~~~~i~~~vl~~i-~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~--- 138 (165)
|+ |.+|-. ..+.+++..+++--+++ .+-.++.-| .---.+.....|+||+.-+.-...|.+...+.-+
T Consensus 858 ----ep-d~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~ 931 (982)
T KOG4653|consen 858 ----EP-DHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLL 931 (982)
T ss_pred ----Cc-hHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 22 335733 33456666666666666 444444333 3333477899999999999999999997544322
Q ss_pred HHHHHHHHHhhc-CCCCHHHHHHHHhcC
Q psy12576 139 RNFIMEVVCEAT-QSPDTQIRVAALQCL 165 (165)
Q Consensus 139 l~~il~~v~~~l-~D~~p~VR~aA~~al 165 (165)
+-.....+.+.. .+++-.+|..|+-||
T Consensus 932 l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 932 LIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 222233333333 378888999998774
No 85
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=92.00 E-value=0.57 Score=32.52 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=46.9
Q ss_pred cCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccC--chHHHHHHHHHHHHhh
Q psy12576 72 EDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHA--DWRHRDAALMSFGAIL 127 (165)
Q Consensus 72 ddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~--dw~~R~Aa~~Alg~i~ 127 (165)
++.|..+..|+..|..+...++. .+-|.++....+.+.++ .+..+.+|+++|++++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999994 46788887777777754 5778999999999993
No 86
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.72 E-value=0.32 Score=43.82 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=47.6
Q ss_pred HHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 85 LMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 85 Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
|-.|++.--..+++.+.|++. .-.......|.+|+.||.-+++-+... -++.++++..+. +.++.||.||+..
T Consensus 467 LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~----v~~~l~~i~~n~--~e~~EvRiaA~~~ 539 (574)
T smart00638 467 LKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRK----VQEVLLPIYLNR--AEPPEVRMAAVLV 539 (574)
T ss_pred HHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchH----HHHHHHHHHcCC--CCChHHHHHHHHH
Confidence 444443322467777777776 223456789999999999888766553 244455554332 5667799999865
Q ss_pred C
Q psy12576 165 L 165 (165)
Q Consensus 165 l 165 (165)
|
T Consensus 540 l 540 (574)
T smart00638 540 L 540 (574)
T ss_pred H
Confidence 3
No 87
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=91.61 E-value=0.42 Score=39.62 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=40.0
Q ss_pred chHHHHH-HHHHHHHhhc-CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 112 DWRHRDA-ALMSFGAILV-RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 112 dw~~R~A-a~~Alg~i~E-G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.|+...+ +..+|.-+.. -.+......+.+-++|.++..+.|.++.+|.-++.||
T Consensus 88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL 143 (282)
T PF10521_consen 88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLL 143 (282)
T ss_pred CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHH
Confidence 6887753 2244444433 4444456678999999999999999999999998875
No 88
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=91.39 E-value=0.83 Score=32.76 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=47.1
Q ss_pred cchhhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576 95 DMVPHILPFVNANIE-HADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT 155 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p 155 (165)
.+++.++|++...+. +...-+|-|++|-+|.++-=.. ...+-++.++..+++.......
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~ 61 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETV 61 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchh
Confidence 578999999999999 7788999999999999985332 2334578888888888776655
No 89
>KOG1060|consensus
Probab=90.88 E-value=2.1 Score=40.67 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=50.5
Q ss_pred HHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 85 LMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 85 Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
|-.|+..==.-|.|.+|-.|++...++.++.|+.|..|+-=+= . ....+-++++.+|-..|.|..|.|-.+|..|
T Consensus 129 LRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLY----s-Ld~e~k~qL~e~I~~LLaD~splVvgsAv~A 203 (968)
T KOG1060|consen 129 LRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLY----S-LDPEQKDQLEEVIKKLLADRSPLVVGSAVMA 203 (968)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHh----c-CChhhHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 6666655334577888888888888888888887777764221 1 1223445777777777788888888777654
No 90
>KOG2025|consensus
Probab=90.71 E-value=2.1 Score=40.30 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcC------CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC-CCC
Q psy12576 82 GVCLMLLSSCCE------EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ-SPD 154 (165)
Q Consensus 82 ~~~Ld~la~~~~------~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~-D~~ 154 (165)
..|+..|+...+ +.++..+..-+...+.+-.+..|.-|++||.-.=+...+... .++....-.++ ||+
T Consensus 103 frvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~-----~v~n~l~~liqnDpS 177 (892)
T KOG2025|consen 103 FRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC-----PVVNLLKDLIQNDPS 177 (892)
T ss_pred HHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHHHhcCCc
Confidence 455555655555 235566667777788999999999999999988865555322 22333333343 999
Q ss_pred HHHHHHHHhcC
Q psy12576 155 TQIRVAALQCL 165 (165)
Q Consensus 155 p~VR~aA~~al 165 (165)
+.||.||+-++
T Consensus 178 ~EVRRaaLsnI 188 (892)
T KOG2025|consen 178 DEVRRAALSNI 188 (892)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 91
>KOG0567|consensus
Probab=90.44 E-value=0.64 Score=38.72 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=47.2
Q ss_pred HcCCcchhhHHHHHhhhccc--CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 91 CCEEDMVPHILPFVNANIEH--ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 91 ~~~~~i~~~vl~~i~~~l~~--~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
++|.-.-|..+|.+.+.|.+ +++..|+-|.-|||+|+. +.-++++.+.+.|+.+.||..+-.+|
T Consensus 210 VfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 210 VFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred HHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34432335567777777764 679999999999999984 12366777889999999999876553
No 92
>KOG2549|consensus
Probab=90.07 E-value=1.5 Score=39.80 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=72.2
Q ss_pred HHHHHHhHHHHHHHHHhhccC--CC-CCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccC--chHHHHH
Q psy12576 47 YAKGALQYLVPILTQKLTKQE--EL-DDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHA--DWRHRDA 118 (165)
Q Consensus 47 ~~~~~~~~l~p~ll~~l~~~~--ed-~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~--dw~~R~A 118 (165)
|+.+++..|+|-++.++.... .+ ++|+.|..++.|+..|..+-..+++ .+-+.++.++.+-+.++ .|.-.+.
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 677788889999999888643 12 3455799999999999988877874 36688888888877765 6889999
Q ss_pred HHHHHHHhhcCCcchhchHhHHHHHHHHHh
Q psy12576 119 ALMSFGAILVRPSFIITISERNFIMEVVCE 148 (165)
Q Consensus 119 a~~Alg~i~EG~~~~~~~~~l~~il~~v~~ 148 (165)
++..|..++--.-.....++++.+...+-.
T Consensus 361 ai~gL~~lg~~~I~~~ilp~L~~~~~~l~~ 390 (576)
T KOG2549|consen 361 AIAGLSELGHEVIRTVILPNLKEYNERLQS 390 (576)
T ss_pred HHHHHHHhhhhhhhheeccchHHHHHHhhh
Confidence 998888776422222233345555444333
No 93
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=90.06 E-value=0.41 Score=33.32 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 114 RHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 114 ~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
+.|+||+++||++.....- .....++.+|..+++...||.| ||..+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py-~vP~w~P~~l~~La~~~~~~~~-I~~tv 49 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPY-DVPPWMPEVLEELARHANDPQP-IRTTV 49 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S---SS-HHHHHHHHHHTTSSS-SS-HHHHT
T ss_pred HHHHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHhCCCch-HHHHH
Confidence 5799999999999976543 3445899999999999998665 44433
No 94
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=89.79 E-value=0.66 Score=33.24 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=44.8
Q ss_pred HHHHhhhcccCc----hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 101 LPFVNANIEHAD----WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 101 l~~i~~~l~~~d----w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
+.++.+.+.+.+ -..|+-++.|+|.+.+.++..+ ...+++|+-.+-.++..|+ .|..|+.|
T Consensus 13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-~~a~pQI~acL~saL~~~e--L~~~al~~ 77 (107)
T smart00802 13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-SSALPQIMACLQSALEIPE--LRSLALRC 77 (107)
T ss_pred HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCchh--HHHHHHHH
Confidence 344555555544 3458899999999999777654 3578999988888887554 88888876
No 95
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.77 E-value=1.3 Score=30.82 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=49.6
Q ss_pred HHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 101 LPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 101 l~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.-+-+.++++....|--|+.-|..+.+.-+ .....++.++..+...++|+++-|==+|.++|
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L 67 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGL 67 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 3445567888999999999999999988776 12235889999999999999998888777654
No 96
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=89.00 E-value=0.4 Score=27.70 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 140 NFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 140 ~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
...+|.+++.+.++++.||..|+-||
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al 36 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWAL 36 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34789999999999999999998764
No 97
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=88.87 E-value=1.6 Score=30.97 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=39.9
Q ss_pred HHHhhhccc----CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 102 PFVNANIEH----ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 102 ~~i~~~l~~----~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.++...+.+ .+-..|+-++.++|.+.+=+++. ....+++|+-.+-.++..| .+|..|+.|
T Consensus 14 ~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~-i~~~~pQI~a~L~sal~~~--~l~~~al~~ 77 (107)
T PF08064_consen 14 TRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSH-ISSARPQIMACLQSALEIP--ELREEALSC 77 (107)
T ss_pred HHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhCCh--hhHHHHHHH
Confidence 444444444 56677788888888888844443 3346777777777777666 677777765
No 98
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=88.75 E-value=0.73 Score=24.75 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHhh
Q psy12576 113 WRHRDAALMSFGAIL 127 (165)
Q Consensus 113 w~~R~Aa~~Alg~i~ 127 (165)
|..|++|..+||.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 788999999999983
No 99
>KOG4500|consensus
Probab=88.46 E-value=0.87 Score=40.62 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=53.3
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCc---chhchHhHHHHHHHHHh-hcCCCCHHHHHHHHhcC
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPS---FIITISERNFIMEVVCE-ATQSPDTQIRVAALQCL 165 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~---~~~~~~~l~~il~~v~~-~l~D~~p~VR~aA~~al 165 (165)
|.++.|+...+.|.|-...-+|.+|+|..+.-=+ ..+.+..++.++..+-+ .-.|.+-++++|++.||
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsAL 385 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSAL 385 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHH
Confidence 6699999999999999999999999999985322 22334456667776666 45699999999998775
No 100
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.30 E-value=1.1 Score=36.87 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=49.1
Q ss_pred hhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 98 PHILPFVNANIE-HADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 98 ~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.-|.-+...++ +.|+..++.++.++|..+-.......-.+ -..++.|.+.+.+|+|.||.-|+.||
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL 78 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNAL 78 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHH
Confidence 334445555665 56899999999999998876654211111 25678889999999999999998875
No 101
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=88.19 E-value=3.7 Score=35.84 Aligned_cols=68 Identities=18% Similarity=0.072 Sum_probs=55.8
Q ss_pred chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
.+...+|.+.+.+++.|...---|++|++.+.+|+.+++..-.=-.+++.+++.|.+|+..|+.-|+.
T Consensus 240 ~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 240 NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 67778888999999999999999999999999999986543323457778999999998888776654
No 102
>KOG0915|consensus
Probab=88.13 E-value=0.69 Score=46.41 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=61.2
Q ss_pred HHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 83 VCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 83 ~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
+=|-.||.-+| .+++-.+|...+ .+.-|.-|++|...||+|++-..++ .++++.+++|.+.+.==||++.||.|-
T Consensus 943 KELc~LASdl~qPdLVYKFM~LAn---h~A~wnSk~GaAfGf~~i~~~a~~k-l~p~l~kLIPrLyRY~yDP~~~Vq~aM 1018 (1702)
T KOG0915|consen 943 KELCNLASDLGQPDLVYKFMQLAN---HNATWNSKKGAAFGFGAIAKQAGEK-LEPYLKKLIPRLYRYQYDPDKKVQDAM 1018 (1702)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhh---hhchhhcccchhhchHHHHHHHHHh-hhhHHHHhhHHHhhhccCCcHHHHHHH
Confidence 44778899999 466666665543 3567999999999999999987774 567999999999988889999999875
No 103
>KOG1991|consensus
Probab=88.10 E-value=5.2 Score=38.74 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=73.5
Q ss_pred HHhHHHHHHHHHhhccCCCCC-cCCCchhhHHHHHHHHHHHHcC-Cc----chhh-HHHHHhhhcccCchHHHHHHHHHH
Q psy12576 51 ALQYLVPILTQKLTKQEELDD-EDDWNPCKAAGVCLMLLSSCCE-ED----MVPH-ILPFVNANIEHADWRHRDAALMSF 123 (165)
Q Consensus 51 ~~~~l~p~ll~~l~~~~ed~d-ddew~~~~~a~~~Ld~la~~~~-~~----i~~~-vl~~i~~~l~~~dw~~R~Aa~~Al 123 (165)
.+|++++.++++++.-+++.. .+.--....|...+..|+..+- +. .+.. +.++|-+.++|+--..|-=|+..+
T Consensus 407 ~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl 486 (1010)
T KOG1991|consen 407 TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVL 486 (1010)
T ss_pred hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHH
Confidence 678899999999997666532 1111112234444444444443 22 2222 335555567788888888888999
Q ss_pred HHhh-cCCcchhchHhHHHHHHHHHhhcC-CCCHHHHHHHHhcC
Q psy12576 124 GAIL-VRPSFIITISERNFIMEVVCEATQ-SPDTQIRVAALQCL 165 (165)
Q Consensus 124 g~i~-EG~~~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA~~al 165 (165)
+..+ +..++ ...+-.++..+.+++. |++.-||.-|..||
T Consensus 487 ~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalAL 527 (1010)
T KOG1991|consen 487 SQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALAL 527 (1010)
T ss_pred HHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHH
Confidence 9888 33333 3468889999999988 99999998887664
No 104
>KOG0414|consensus
Probab=87.64 E-value=1.6 Score=42.90 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhh-cCCc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAIL-VRPS 131 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~-EG~~ 131 (165)
..=+|.++..|.+.+ .-..+..+..+|.-+|-++|+ ++.+--+++-..+.+++...|+.|+|.+.-+. -|.-
T Consensus 959 es~l~llftimeksp------~p~IRsN~VvalgDlav~fpn-lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmi 1031 (1251)
T KOG0414|consen 959 ESHLPLLFTIMEKSP------SPRIRSNLVVALGDLAVRFPN-LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMI 1031 (1251)
T ss_pred HHHHHHHHHHHhcCC------Cceeeecchheccchhhhccc-ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhh
Confidence 445788888888765 134444555667888888885 88888899999999999999999999999765 2222
Q ss_pred chhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576 132 FIITISERNFIMEVVCEATQSPDTQIRVAAL 162 (165)
Q Consensus 132 ~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~ 162 (165)
+ ...-++-....+.||++++|.-|-
T Consensus 1032 K------VKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 1032 K------VKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred H------hcccHHHHHHHhcCCcHHHHHHHH
Confidence 1 333455556678899999998774
No 105
>KOG1824|consensus
Probab=87.64 E-value=2.3 Score=41.21 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~ 130 (165)
.+....++.+..+|-| -.+...|-.|+..+-.++|| .-+|.++|.+-+.++++- -|-+|+.|+.-|+..+
T Consensus 568 ~m~~~tl~rL~a~d~D-----qeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi--TRl~AvkAlt~Ia~S~ 640 (1233)
T KOG1824|consen 568 TMYDCTLQRLKATDSD-----QEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI--TRLTAVKALTLIAMSP 640 (1233)
T ss_pred HHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh--HHHHHHHHHHHHHhcc
Confidence 3666677777765532 46777888888888888886 357899999999998876 7899999999999987
Q ss_pred cchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576 131 SFIITISERNFIMEVVCEATQSPDTQIRVAAL 162 (165)
Q Consensus 131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~ 162 (165)
-...+...+..+++.+...+.-.+-..|.+.+
T Consensus 641 l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l 672 (1233)
T KOG1824|consen 641 LDIDLSPVLTEILPELASFLRKNQRALRLATL 672 (1233)
T ss_pred ceeehhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77555667888888877777655555555543
No 106
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=87.18 E-value=1.4 Score=34.56 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHcCCcchhhHH-HHH---------------hhhcccCchHHHHHHHHHHHHhhcCCcch
Q psy12576 78 CKAAGVCLMLLSSCCEEDMVPHIL-PFV---------------NANIEHADWRHRDAALMSFGAILVRPSFI 133 (165)
Q Consensus 78 ~~~a~~~Ld~la~~~~~~i~~~vl-~~i---------------~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~ 133 (165)
+-+|..||..+++.++.+.+..-+ -|+ .--+.|++.+.|-||+-++.+++||.+.+
T Consensus 3 R~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~ 74 (182)
T PF13251_consen 3 RQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPF 74 (182)
T ss_pred hHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHH
Confidence 567888999999987754332221 122 22467899999999999999999998763
No 107
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=87.18 E-value=8.3 Score=36.70 Aligned_cols=89 Identities=21% Similarity=0.186 Sum_probs=66.1
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhc-cc-------CchHHHHHHHHHHHHhhcCCcch-hchH-hHHHHHH
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANI-EH-------ADWRHRDAALMSFGAILVRPSFI-ITIS-ERNFIME 144 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l-~~-------~dw~~R~Aa~~Alg~i~EG~~~~-~~~~-~l~~il~ 144 (165)
.++.-||..||-.++..=|++.+..+++|+..-+ ++ .+.++.++|+--+++|.....+. ...+ .=..|++
T Consensus 384 ~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~ 463 (970)
T COG5656 384 LSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVN 463 (970)
T ss_pred CChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 4666677777777777777788999999998866 21 45888899999999999855542 1222 2367788
Q ss_pred HHHhhcCCCCHHHHHHHHh
Q psy12576 145 VVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 145 ~v~~~l~D~~p~VR~aA~~ 163 (165)
.|.+.++++---.|.-||+
T Consensus 464 hv~P~f~s~ygfL~Srace 482 (970)
T COG5656 464 HVIPAFRSNYGFLKSRACE 482 (970)
T ss_pred HhhHhhcCcccchHHHHHH
Confidence 8888899998888877775
No 108
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=86.97 E-value=1.3 Score=25.53 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=22.2
Q ss_pred HHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 100 ILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
++|.+-+.+.+++...|+.|+.||+.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3444455666999999999999999886
No 109
>KOG1851|consensus
Probab=86.89 E-value=3.5 Score=41.80 Aligned_cols=88 Identities=20% Similarity=0.331 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHcC-CcchhhHHHHHhh-hcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576 78 CKAAGVCLMLLSSCCE-EDMVPHILPFVNA-NIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT 155 (165)
Q Consensus 78 ~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~-~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p 155 (165)
.+++..|.+.++.... .++.|.++..+.. ...+..|+.|-|.+--+....---.-...+..++.|-..+.+.+.|.+.
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i 1583 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQI 1583 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHH
Confidence 5788999999999887 5788888887774 4446679999886666655443221112344678888888889999999
Q ss_pred HHHHHHHhcC
Q psy12576 156 QIRVAALQCL 165 (165)
Q Consensus 156 ~VR~aA~~al 165 (165)
.||.-|..||
T Consensus 1584 ~vre~Aa~~L 1593 (1710)
T KOG1851|consen 1584 EVREEAAKCL 1593 (1710)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 110
>KOG2933|consensus
Probab=86.89 E-value=14 Score=31.55 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=59.6
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhc---ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANI---EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l---~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
..++++|..|++.|.+.+++.+...+=..+...+ ...+--.|++|--||-++..-..+. .+++.+...++
T Consensus 143 S~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~ 215 (334)
T KOG2933|consen 143 SAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQ 215 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHh
Confidence 3678999999999999999876653333333322 2334557899999999888655542 34666777788
Q ss_pred CCCHHHHHHHHhc
Q psy12576 152 SPDTQIRVAALQC 164 (165)
Q Consensus 152 D~~p~VR~aA~~a 164 (165)
..+|+||.-|+-|
T Consensus 216 ~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 216 HSNPRVRAKAALC 228 (334)
T ss_pred hhchhhhhhhhcc
Confidence 9999999888755
No 111
>KOG1293|consensus
Probab=86.80 E-value=5.7 Score=36.88 Aligned_cols=90 Identities=8% Similarity=0.031 Sum_probs=71.3
Q ss_pred CchhhHHHHHHHHHHHHcCC---c-chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch-hchHhHHHHHHHHHhh
Q psy12576 75 WNPCKAAGVCLMLLSSCCEE---D-MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI-ITISERNFIMEVVCEA 149 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~---~-i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l~~il~~v~~~ 149 (165)
-....++..+|..+-.-+++ + +-...+.-+.+++.+.+...|.-++++|.-++-||+.. +.....+.-.+.+...
T Consensus 433 ~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l 512 (678)
T KOG1293|consen 433 IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDL 512 (678)
T ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHH
Confidence 45566667777777777775 2 22346667788999999999999999999999999985 4444667778899999
Q ss_pred cCCCCHHHHHHHHhc
Q psy12576 150 TQSPDTQIRVAALQC 164 (165)
Q Consensus 150 l~D~~p~VR~aA~~a 164 (165)
.+||++-|+..+++-
T Consensus 513 ~nd~d~~Vqeq~fql 527 (678)
T KOG1293|consen 513 INDPDWAVQEQCFQL 527 (678)
T ss_pred HhCCCHHHHHHHHHH
Confidence 999999999988763
No 112
>KOG0392|consensus
Probab=86.77 E-value=1.6 Score=43.36 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=70.3
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT 155 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p 155 (165)
.++.+.+++|..+-.+.....+...+.++.+.+.-++|..|+++++++-.-.- .....+...++.+++.++.++.|.+-
T Consensus 144 pVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a-ir~d~l~~~~~~vl~~~i~~L~ds~d 222 (1549)
T KOG0392|consen 144 PVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVA-IRQDLLFQLLNLVLDFVIEGLEDSDD 222 (1549)
T ss_pred hhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcch
Confidence 45667778888887777777888888888888888899999999998875554 33333445688999999999999999
Q ss_pred HHHHHHHhc
Q psy12576 156 QIRVAALQC 164 (165)
Q Consensus 156 ~VR~aA~~a 164 (165)
-||..|...
T Consensus 223 dv~~~aa~~ 231 (1549)
T KOG0392|consen 223 DVRSVAAQF 231 (1549)
T ss_pred HHHHHHHHH
Confidence 999888654
No 113
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=86.36 E-value=0.66 Score=24.68 Aligned_cols=14 Identities=36% Similarity=0.252 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhc
Q psy12576 115 HRDAALMSFGAILV 128 (165)
Q Consensus 115 ~R~Aa~~Alg~i~E 128 (165)
.|++|..+||.+.+
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 48999999999987
No 114
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.08 E-value=0.74 Score=41.74 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=43.1
Q ss_pred HHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 85 LMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 85 Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
|-.|++. | ..+++.+.|++.... ...-..|-+|+.||.-+++-|... -++.++++..+.- .++.||-||+.
T Consensus 511 LkaLgN~-g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~----v~~~l~~I~~n~~--e~~EvRiaA~~ 582 (618)
T PF01347_consen 511 LKALGNL-GHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEK----VREILLPIFMNTT--EDPEVRIAAYL 582 (618)
T ss_dssp HHHHHHH-T-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHH----HHHHHHHHHH-TT--S-HHHHHHHHH
T ss_pred HHHhhcc-CCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHH----HHHHHHHHhcCCC--CChhHHHHHHH
Confidence 4444433 3 456666666664443 446789999999999887766543 2455555544433 35569999986
Q ss_pred c
Q psy12576 164 C 164 (165)
Q Consensus 164 a 164 (165)
.
T Consensus 583 ~ 583 (618)
T PF01347_consen 583 I 583 (618)
T ss_dssp H
T ss_pred H
Confidence 4
No 115
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=86.04 E-value=1.6 Score=35.99 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=46.3
Q ss_pred HhhhcccCchHHHHHHHHHHHHhhcCCcch-hchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576 104 VNANIEHADWRHRDAALMSFGAILVRPSFI-ITISERNFIMEVVCEATQSPDTQIRVA 160 (165)
Q Consensus 104 i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l~~il~~v~~~l~D~~p~VR~a 160 (165)
+.+++.|+|+..|.-|+..|+.+++..... ...+++..++.+.+..+.|.. .|+.+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~ 60 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPA 60 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHH
Confidence 567899999999999999999999988864 556689999999999996554 35444
No 116
>KOG2032|consensus
Probab=85.00 E-value=6.8 Score=35.36 Aligned_cols=78 Identities=6% Similarity=0.138 Sum_probs=58.4
Q ss_pred HHHHHHHcCCcchh------hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC-CHHH
Q psy12576 85 LMLLSSCCEEDMVP------HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP-DTQI 157 (165)
Q Consensus 85 Ld~la~~~~~~i~~------~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~-~p~V 157 (165)
+.-+|+..+..+++ .++....+...+++-+.|.-|+-.||..++||.++.++ |-..++..|+.+|-|+ +..|
T Consensus 238 ~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~t-h~~~~ldaii~gL~D~~~~~V 316 (533)
T KOG2032|consen 238 IAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRT-HKTTQLDAIIRGLYDDLNEEV 316 (533)
T ss_pred HHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHH-hHHHHHHHHHHHHhcCCccHH
Confidence 44567777765554 56666677888999999999999999999997776554 7899999999998744 4555
Q ss_pred HHHHHh
Q psy12576 158 RVAALQ 163 (165)
Q Consensus 158 R~aA~~ 163 (165)
.--|.-
T Consensus 317 ~leam~ 322 (533)
T KOG2032|consen 317 QLEAMK 322 (533)
T ss_pred HHHHHH
Confidence 544443
No 117
>KOG2259|consensus
Probab=84.75 E-value=2.9 Score=39.03 Aligned_cols=90 Identities=18% Similarity=0.082 Sum_probs=68.6
Q ss_pred CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC---cc--hhchHhHHHHHHHHHh
Q psy12576 74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRP---SF--IITISERNFIMEVVCE 148 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~---~~--~~~~~~l~~il~~v~~ 148 (165)
+.+++++|...|-.|+. |-++-..+-....+.+++.+-..|.||+-.+...+.-| .+ ....+..+.....||.
T Consensus 211 D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~ 288 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCR 288 (823)
T ss_pred CcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHH
Confidence 35778889988877777 54455556677888999999999999987777666544 22 2233457888999999
Q ss_pred hcCCCCHHHHHHHHhcC
Q psy12576 149 ATQSPDTQIRVAALQCL 165 (165)
Q Consensus 149 ~l~D~~p~VR~aA~~al 165 (165)
++.|-.-.||.-|..+|
T Consensus 289 ~v~D~sl~VRV~AaK~l 305 (823)
T KOG2259|consen 289 AVRDRSLSVRVEAAKAL 305 (823)
T ss_pred HHhcCceeeeehHHHHh
Confidence 99999999998876543
No 118
>KOG1059|consensus
Probab=84.72 E-value=1.4 Score=41.47 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
+.+|+-||...-..+-.-+-+-|-..+++.-+..|+=|++.+.=+..--.+ -+..-.|.+.+.|.||+|-|..||
T Consensus 127 giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-----Alr~~FprL~EkLeDpDp~V~SAA 201 (877)
T KOG1059|consen 127 GLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-----ALRPCFPRLVEKLEDPDPSVVSAA 201 (877)
T ss_pred hheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHhccCCCchHHHHH
Confidence 345666665544445555666666788899999999999998877653222 255567888999999999999999
Q ss_pred Hh
Q psy12576 162 LQ 163 (165)
Q Consensus 162 ~~ 163 (165)
.+
T Consensus 202 V~ 203 (877)
T KOG1059|consen 202 VS 203 (877)
T ss_pred HH
Confidence 65
No 119
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.45 E-value=2.6 Score=38.24 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=37.5
Q ss_pred chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+++.+...+.+.....+-..+..++.|||+++-. . -++.++|.+ .+-.+....||.+|+.||
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--~-----~i~~l~~~i-~~~~~~~~~~R~~Ai~Al 548 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--E-----SIPVLLPYI-EGKEEVPHFIRVAAIQAL 548 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--G-----GHHHHHTTS-TTSS-S-HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--h-----hhHHHHhHh-hhccccchHHHHHHHHHH
Confidence 4455555555555566778899999999999742 1 133333332 222255899999999986
No 120
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=84.43 E-value=1.9 Score=32.93 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=44.1
Q ss_pred HHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 102 PFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 102 ~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.+...+.|++...|++|+..+..-... ..+.+.+++.+-..+.|++..||.|...+|
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L 165 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWAL 165 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7888899888877777777666543321 246888999988888899999999986654
No 121
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.36 E-value=3 Score=32.41 Aligned_cols=64 Identities=23% Similarity=0.156 Sum_probs=49.8
Q ss_pred chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
++...++-|-+...+++...|.+|+-.++.+..+-=. +=...+|.++-...||++.||..|...
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-----nP~~cvp~lIAL~ts~~~~ir~~A~~~ 68 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLV-----NPKQCVPTLIALETSPNPSIRSRAYQL 68 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-----ChHHHHhHhhhhhCCCChHHHHHHHHH
Confidence 4556677777778899999999999999999973322 122358888888889999999999754
No 122
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=84.27 E-value=5.2 Score=33.18 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=43.2
Q ss_pred chhhHH-HHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 96 MVPHIL-PFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 96 i~~~vl-~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.+..++ .+|.+.+++.+...|+.|+.++|-.+=--. .....++..++. .++..++.||..|+++|
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~----~~~~~~~~v~~~al~~l 88 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQ----ALQKDDEEVKITALKAL 88 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHH----HHHhCCHHHHHHHHHHH
Confidence 333444 667789999999999999999995542111 223334444444 44434999999998874
No 123
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.70 E-value=5.9 Score=29.00 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=18.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 142 IMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 142 il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.=..|.+.+.++++.||+.|+.|+
T Consensus 87 ~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 87 AKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHH
Confidence 345677888999999999999874
No 124
>KOG1822|consensus
Probab=83.69 E-value=3.2 Score=42.70 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHcCCc-chhhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH-
Q psy12576 79 KAAGVCLMLLSSCCEED-MVPHILPFVNANIE-HADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT- 155 (165)
Q Consensus 79 ~~a~~~Ld~la~~~~~~-i~~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p- 155 (165)
=+++.++.++|+.+|+. .+-.+....-.++. ..|+..|-.=.+|+|+|---.+......+++.-+..++-..+|+++
T Consensus 894 c~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p 973 (2067)
T KOG1822|consen 894 CAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSP 973 (2067)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCc
Confidence 35888999999999964 34445555545555 4677778888999999998777766667899988888888889987
Q ss_pred HHHHHHHhcC
Q psy12576 156 QIRVAALQCL 165 (165)
Q Consensus 156 ~VR~aA~~al 165 (165)
.||..++.++
T Consensus 974 ~VqtwSL~al 983 (2067)
T KOG1822|consen 974 VVQTWSLHAL 983 (2067)
T ss_pred hhhhhHHHHH
Confidence 9999888764
No 125
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=82.89 E-value=1.7 Score=36.27 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=43.5
Q ss_pred hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhch---HhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 99 HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITI---SERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 99 ~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~---~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.-||+. .+.++||..+..|...++.++......... ..++.++..+.+.++.++..++..|.+||
T Consensus 106 ~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L 174 (312)
T PF03224_consen 106 PYSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCL 174 (312)
T ss_dssp -HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHH
T ss_pred hHHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Confidence 5667776 888899999999999999999876664333 46777888877777767777777776653
No 126
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=82.70 E-value=14 Score=30.83 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=60.1
Q ss_pred HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-------cchhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-------DMVPHILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-------~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
.+..++..+... |+.....|...|..+...-+. .+++.++.++.+.+++++-.++..++-+|+.++
T Consensus 106 ~~~~fl~ll~~~-------D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 106 PYSPFLKLLDRN-------DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp -HHHHHHH-S-S-------SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 455566644432 366667777888888766553 367888888888888888888899999999998
Q ss_pred cCCcchhchHhHHHHHHHHHhhc-------CCCCHHHHHHHHhcC
Q psy12576 128 VRPSFIITISERNFIMEVVCEAT-------QSPDTQIRVAALQCL 165 (165)
Q Consensus 128 EG~~~~~~~~~l~~il~~v~~~l-------~D~~p~VR~aA~~al 165 (165)
.-..-.... .-...++.+.+.+ ...++.+.|.++.|+
T Consensus 179 ~~~~~R~~f-~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~l 222 (312)
T PF03224_consen 179 RSKEYRQVF-WKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCL 222 (312)
T ss_dssp TSHHHHHHH-HTHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred CcchhHHHH-HhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHH
Confidence 432211100 0144444444444 366688888888874
No 127
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=82.15 E-value=15 Score=25.82 Aligned_cols=80 Identities=10% Similarity=-0.009 Sum_probs=53.8
Q ss_pred HHHHHHHcC--CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchH-hHHHHHHHHHh----h--cCCCCH
Q psy12576 85 LMLLSSCCE--EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITIS-ERNFIMEVVCE----A--TQSPDT 155 (165)
Q Consensus 85 Ld~la~~~~--~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~-~l~~il~~v~~----~--l~D~~p 155 (165)
+..++.... ..-...++.++.+.+.+.+|+...=|+..+=+++.-|++.+... -...++..+++ . -.+.++
T Consensus 21 i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 100 (115)
T cd00197 21 IMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVST 100 (115)
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCCh
Confidence 344444433 24567799999999999999999999999999998888632211 11223333332 1 237799
Q ss_pred HHHHHHHhc
Q psy12576 156 QIRVAALQC 164 (165)
Q Consensus 156 ~VR~aA~~a 164 (165)
.||.-+.+.
T Consensus 101 ~Vr~k~~~l 109 (115)
T cd00197 101 NVREKAIEL 109 (115)
T ss_pred HHHHHHHHH
Confidence 999988764
No 128
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=81.93 E-value=2.3 Score=23.71 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=22.3
Q ss_pred chhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 96 MVPHILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
.+|++++++. ++++..++.++.+|+.|+
T Consensus 13 ~i~~L~~ll~----~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLK----SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHc----CCCHHHHHHHHHHHHHHc
Confidence 5666666544 788999999999999886
No 129
>PHA02836 putative transmembrane protein; Provisional
Probab=81.76 E-value=1.1 Score=33.53 Aligned_cols=67 Identities=9% Similarity=0.002 Sum_probs=45.9
Q ss_pred HHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576 86 MLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP 153 (165)
Q Consensus 86 d~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~ 153 (165)
+.|...++ +--...+..|+..+...+ ...--.-+=-||.++|.|+.....++++.|||.+.+.+.|.
T Consensus 74 ~lL~~dL~~~g~~~Rl~kfi~sn~n~s-y~~~LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn 141 (153)
T PHA02836 74 NLLTSNLSKKGFISRFKKYLYSNYDVS-YVSALTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN 141 (153)
T ss_pred hhhhcccCcccHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence 56666666 345666777777654321 01112233357899999999877789999999999999875
No 130
>KOG4224|consensus
Probab=81.29 E-value=2 Score=37.66 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHcCC-cch--hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc-hhchHhHHHHHHHHHhhcCCC
Q psy12576 78 CKAAGVCLMLLSSCCEE-DMV--PHILPFVNANIEHADWRHRDAALMSFGAILVRPSF-IITISERNFIMEVVCEATQSP 153 (165)
Q Consensus 78 ~~~a~~~Ld~la~~~~~-~i~--~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~-~~~~~~l~~il~~v~~~l~D~ 153 (165)
++.+..+|-.|.....+ +++ ---+||+.+.+.+.|.-.|+=+..|+|.|+-.-.. +++..-=+.++|.++..+.|+
T Consensus 184 qrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~ 263 (550)
T KOG4224|consen 184 QRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG 263 (550)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC
Confidence 44555566666655553 222 23678888899999999999999999999854332 334333467899999999999
Q ss_pred CHHHHHHHHhcC
Q psy12576 154 DTQIRVAALQCL 165 (165)
Q Consensus 154 ~p~VR~aA~~al 165 (165)
+++|+--|-.||
T Consensus 264 s~kvkcqA~lAL 275 (550)
T KOG4224|consen 264 SDKVKCQAGLAL 275 (550)
T ss_pred ChHHHHHHHHHH
Confidence 999998887654
No 131
>KOG2022|consensus
Probab=81.15 E-value=54 Score=31.86 Aligned_cols=130 Identities=16% Similarity=0.211 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHH-HHHHHHhHHHHHHHHHhhccCCC-------CCcCCCc
Q psy12576 5 IDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRF-YAKGALQYLVPILTQKLTKQEEL-------DDEDDWN 76 (165)
Q Consensus 5 ~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~p~ll~~l~~~~ed-------~dddew~ 76 (165)
+|.+.-...+||-++-++-......- .+.++. |.++.+.+|+.+++..+.-..+. |+-+..+
T Consensus 369 eE~~S~~~l~FW~tL~dei~~~~~e~----------~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~ 438 (982)
T KOG2022|consen 369 EEIVSDRTLIFWYTLQDEIMQTINET----------QQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFE 438 (982)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHH
Confidence 46677889999999998754433221 122233 55577778888888888743211 1111222
Q ss_pred h-hhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCc-----hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHH
Q psy12576 77 P-CKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHAD-----WRHRDAALMSFGAILVRPSFIITISERNFIMEV 145 (165)
Q Consensus 77 ~-~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~d-----w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~ 145 (165)
. ++.-.-.+.+.=..+|+.++..+..-+.+.+.+.+ |..-+|-+..|-+++|-.+.. .+.-++..++.
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t-~~~~i~rl~~~ 512 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGET-ESTWIPRLFET 512 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcc-hhHHHHHHHHh
Confidence 2 33444455666667888899999999999998877 999999999999999977763 22345555554
No 132
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=80.47 E-value=3.7 Score=24.24 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCc-chhhHHHHHhhhcccCchHHHHHHHH
Q psy12576 84 CLMLLSSCCEED-MVPHILPFVNANIEHADWRHRDAALM 121 (165)
Q Consensus 84 ~Ld~la~~~~~~-i~~~vl~~i~~~l~~~dw~~R~Aa~~ 121 (165)
||..+...-|.- -.+.+...+...+.++++..|+||+=
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHH
Confidence 455555555531 23688899999999999999999974
No 133
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=80.28 E-value=25 Score=28.96 Aligned_cols=111 Identities=10% Similarity=-0.022 Sum_probs=66.6
Q ss_pred HHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcc---------hhhHHHHHhhhcc--------
Q psy12576 47 YAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDM---------VPHILPFVNANIE-------- 109 (165)
Q Consensus 47 ~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i---------~~~vl~~i~~~l~-------- 109 (165)
.+.+.|+-++|.+|.++-+- +-....-|..||..+-..++... ...+.+-+.+.+.
T Consensus 112 ~i~~~~~liiP~iL~llDD~-------~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~ 184 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDY-------SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPE 184 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCC-------CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCc
Confidence 46678899999999887521 12345568888999988777433 3334445555555
Q ss_pred cCchHHHHHHHHHHHHhh---cCCcchhchHhHHHHHHH-HHhhcC----CCCHHHHHHHHhc
Q psy12576 110 HADWRHRDAALMSFGAIL---VRPSFIITISERNFIMEV-VCEATQ----SPDTQIRVAALQC 164 (165)
Q Consensus 110 ~~dw~~R~Aa~~Alg~i~---EG~~~~~~~~~l~~il~~-v~~~l~----D~~p~VR~aA~~a 164 (165)
++....=.+|+-|+-.++ +......+...+..++.- |+..+. -+++++|.+.++.
T Consensus 185 ~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~ 247 (282)
T PF10521_consen 185 DESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQ 247 (282)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHH
Confidence 445555566666666663 233332333445555543 666653 3468888877653
No 134
>KOG2274|consensus
Probab=79.75 E-value=27 Score=33.94 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccC-------CC-----CCcC
Q psy12576 6 DEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQE-------EL-----DDED 73 (165)
Q Consensus 6 e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~-------ed-----~ddd 73 (165)
++...+-+||-++++..- +.++-+++.+|++++.+...+.=.+ .| .|+|
T Consensus 313 ~~l~i~i~eF~s~i~t~~-------------------~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd 373 (1005)
T KOG2274|consen 313 ETLVIQIVEFLSTIVTNR-------------------FLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADED 373 (1005)
T ss_pred HHhhhhHHHHHHHHHHHH-------------------HHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCC
Confidence 346778999999999751 1222344455555655444433100 01 1222
Q ss_pred -CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhh---------hccc-CchHHHHHHHHHHHHhhcCCcchhchHhHHHH
Q psy12576 74 -DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNA---------NIEH-ADWRHRDAALMSFGAILVRPSFIITISERNFI 142 (165)
Q Consensus 74 -ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~---------~l~~-~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~i 142 (165)
..+.+.++.-.+..++..+|+.-+.++...... .+.. ..|++.+|=+.+-++..+|..-. ..++.+
T Consensus 374 ~~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~d---d~l~~l 450 (1005)
T KOG2274|consen 374 DGYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDAND---DKLIEL 450 (1005)
T ss_pred CCchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchH---HHHHHH
Confidence 247777788888888999996555555444322 3333 34888888888988888665432 346666
Q ss_pred HHHHHhhcC
Q psy12576 143 MEVVCEATQ 151 (165)
Q Consensus 143 l~~v~~~l~ 151 (165)
..++-+++.
T Consensus 451 ~~~~~~~l~ 459 (1005)
T KOG2274|consen 451 TIMIDNGLV 459 (1005)
T ss_pred HHHHHhhcc
Confidence 666666665
No 135
>KOG2062|consensus
Probab=79.53 E-value=2.2 Score=40.30 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=34.7
Q ss_pred ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 109 EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 109 ~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.|-+++.|.++.||||-.+-|-+.... +..+=+.+.||.--||..|+-+
T Consensus 599 es~N~HVRyGaA~ALGIaCAGtG~~eA-------i~lLepl~~D~~~fVRQgAlIa 647 (929)
T KOG2062|consen 599 ESYNPHVRYGAAMALGIACAGTGLKEA-------INLLEPLTSDPVDFVRQGALIA 647 (929)
T ss_pred hhcChhhhhhHHHHHhhhhcCCCcHHH-------HHHHhhhhcChHHHHHHHHHHH
Confidence 366889999999999988877765422 2233334459999999998754
No 136
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=79.42 E-value=1.6 Score=24.41 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 142 IMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 142 il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.++.+++.++++++.|+..|+.+|
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL 36 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWAL 36 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHH
Confidence 577788888889999999998764
No 137
>KOG1943|consensus
Probab=79.38 E-value=14 Score=36.37 Aligned_cols=70 Identities=16% Similarity=0.050 Sum_probs=52.0
Q ss_pred chhhHHHHHhhhccc--------CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhh-cCCCCHHHHHHHHhcC
Q psy12576 96 MVPHILPFVNANIEH--------ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEA-TQSPDTQIRVAALQCL 165 (165)
Q Consensus 96 i~~~vl~~i~~~l~~--------~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~-l~D~~p~VR~aA~~al 165 (165)
.++.|+|.|.+.+.= .--..|.||....=+.+-+-++..+++.+..+.+.++-. +=|++--+|+||..|+
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 344677777664421 223589999999999999888877777888787755544 5699999999997664
No 138
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=78.63 E-value=54 Score=31.15 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=60.1
Q ss_pred HHHHHHHHhHHHHHHHHHhhccCCC-----C----------CcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc
Q psy12576 45 RFYAKGALQYLVPILTQKLTKQEEL-----D----------DEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE 109 (165)
Q Consensus 45 ~~~~~~~~~~l~p~ll~~l~~~~ed-----~----------dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~ 109 (165)
+++-...+..|--++.+.|.+.+|- | |.|.-+.++.-..||-+|+-..-++.-.....-+..-+.
T Consensus 412 khiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq~d 491 (1053)
T COG5101 412 KHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQLD 491 (1053)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 3444556777888888888875432 2 223347788999999999877665444444444544555
Q ss_pred cC--chHHHHHHHHHHHHhhcCCcch
Q psy12576 110 HA--DWRHRDAALMSFGAILVRPSFI 133 (165)
Q Consensus 110 ~~--dw~~R~Aa~~Alg~i~EG~~~~ 133 (165)
.. +|.+-..-.+|+|+|+-..++.
T Consensus 492 g~EWsw~nlNtLcWAIGSISGamsE~ 517 (1053)
T COG5101 492 GKEWSWNNLNTLCWAIGSISGAMSEV 517 (1053)
T ss_pred CCccchhhHhHHHHHHhcccchhhhH
Confidence 44 5777788999999999766664
No 139
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=78.56 E-value=3.4 Score=31.19 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=66.3
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchH-hHHHHHHHHHhhcC--C
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITIS-ERNFIMEVVCEATQ--S 152 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~-~l~~il~~v~~~l~--D 152 (165)
+.+..+..|+..+=...++..-..+-.|+...+..++-...-.++-++.++.-|+.+....- ..+.+++.+...+. .
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 55666777777764445555666777888888877766688889999999999988742221 25788888888887 8
Q ss_pred CCHHHHHHHHhcC
Q psy12576 153 PDTQIRVAALQCL 165 (165)
Q Consensus 153 ~~p~VR~aA~~al 165 (165)
++..+..+++++|
T Consensus 100 ~~~~~~~~~lell 112 (157)
T PF11701_consen 100 KDRKVQKAALELL 112 (157)
T ss_dssp S-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8999999998764
No 140
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=78.41 E-value=28 Score=32.59 Aligned_cols=84 Identities=20% Similarity=0.166 Sum_probs=61.0
Q ss_pred CchhhHHHHHHHHHHHHcCC--c-chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEE--D-MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~--~-i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
-++++-..+-|-+++.++++ . +...++.-+.+.+.+-++..|.-|+.+|.-.=|--.. +-+.+...+.-.++
T Consensus 105 k~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n-----een~~~n~l~~~vq 179 (885)
T COG5218 105 KKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN-----EENRIVNLLKDIVQ 179 (885)
T ss_pred hhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHh
Confidence 47777778888888888884 3 5566778889999999999999999999877653332 22233333333333
Q ss_pred -CCCHHHHHHHHh
Q psy12576 152 -SPDTQIRVAALQ 163 (165)
Q Consensus 152 -D~~p~VR~aA~~ 163 (165)
||...||.+|+-
T Consensus 180 nDPS~EVRr~all 192 (885)
T COG5218 180 NDPSDEVRRLALL 192 (885)
T ss_pred cCcHHHHHHHHHH
Confidence 999999999974
No 141
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=77.75 E-value=15 Score=30.93 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=69.6
Q ss_pred HhHHHHHHHHHhhcc--CCCCCcCCCchhhHHHHHHHHHHHHcCCc---c----hhhHHHHHhhhcccCchHHHHHHHHH
Q psy12576 52 LQYLVPILTQKLTKQ--EELDDEDDWNPCKAAGVCLMLLSSCCEED---M----VPHILPFVNANIEHADWRHRDAALMS 122 (165)
Q Consensus 52 ~~~l~p~ll~~l~~~--~ed~dddew~~~~~a~~~Ld~la~~~~~~---i----~~~vl~~i~~~l~~~dw~~R~Aa~~A 122 (165)
...++|.|++.+... ...++-=|-..-...++.+..+...+.+. | +.+.++.|.+.+ .+-|..|.+=..-
T Consensus 65 ~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~-~~yPe~r~~ff~L 143 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDF-EEYPEHRVNFFKL 143 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTS-SSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh-hhChHHHHHHHHH
Confidence 346677777755521 11111001233344555555555554432 2 333444444443 2457899998999
Q ss_pred HHHhhcCCcchh---chHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 123 FGAILVRPSFII---TISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 123 lg~i~EG~~~~~---~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.++.+.|-+.. -......++..++-++++++..|-..++.+|
T Consensus 144 L~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l 189 (319)
T PF08767_consen 144 LRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNIL 189 (319)
T ss_dssp HHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999886632 2335688999999999999999999988753
No 142
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=77.74 E-value=13 Score=33.49 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=36.7
Q ss_pred HHHHHHHHHHc--C-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc-CCcc
Q psy12576 82 GVCLMLLSSCC--E-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILV-RPSF 132 (165)
Q Consensus 82 ~~~Ld~la~~~--~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E-G~~~ 132 (165)
++.+..+...+ | ..++..+++++..--..+....|..+++++|++.. +|..
T Consensus 377 ~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~ 431 (574)
T smart00638 377 AQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN 431 (574)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 34444544443 4 36888888888766666778999999999999986 5543
No 143
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.77 E-value=18 Score=34.55 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=56.2
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL 162 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~ 162 (165)
+..++..+.+.+++..+..|.-|+-.+..|.+-.+.... .+..+...+.+.++|-...||..|.
T Consensus 344 ~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~--~r~ev~~lv~r~lqDrss~VRrnai 407 (1128)
T COG5098 344 LNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVG--RRHEVIRLVGRRLQDRSSVVRRNAI 407 (1128)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccc--hHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 445778899999999999999999999999998877433 4889999999999999999999885
No 144
>KOG2032|consensus
Probab=76.71 E-value=14 Score=33.48 Aligned_cols=58 Identities=17% Similarity=0.102 Sum_probs=37.7
Q ss_pred HhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHH---HhhcCCCCHHHHHHH
Q psy12576 104 VNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVV---CEATQSPDTQIRVAA 161 (165)
Q Consensus 104 i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v---~~~l~D~~p~VR~aA 161 (165)
+.+.+.+++...|.||+..||.++--++..-..-..+++..-. +-.++||+|.|-.|.
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence 4467889999999999999999886444321111123333222 334689999886654
No 145
>KOG2160|consensus
Probab=76.64 E-value=7.6 Score=33.43 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCC-----cchhh--HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch-hchHhHHHHHHHHHhhcC-CC
Q psy12576 83 VCLMLLSSCCEE-----DMVPH--ILPFVNANIEHADWRHRDAALMSFGAILVRPSFI-ITISERNFIMEVVCEATQ-SP 153 (165)
Q Consensus 83 ~~Ld~la~~~~~-----~i~~~--vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l~~il~~v~~~l~-D~ 153 (165)
.|||.|-.++.+ .+++. ..+.+. ++.+.+...|+.|...+|.++.-=... ..-.+.+ .++.++..+. |.
T Consensus 102 ~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~-~L~~Ll~~ls~~~ 179 (342)
T KOG2160|consen 102 DALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELG-ALSKLLKILSSDD 179 (342)
T ss_pred HHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc-cHHHHHHHHccCC
Confidence 346776666553 23332 334444 899999999999999999998643321 1111222 5666666665 88
Q ss_pred CHHHHHHHHhcC
Q psy12576 154 DTQIRVAALQCL 165 (165)
Q Consensus 154 ~p~VR~aA~~al 165 (165)
.-.||..|++|+
T Consensus 180 ~~~~r~kaL~Ai 191 (342)
T KOG2160|consen 180 PNTVRTKALFAI 191 (342)
T ss_pred CchHHHHHHHHH
Confidence 889999999874
No 146
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=76.58 E-value=34 Score=28.27 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=64.9
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhh--cCCcchhch------HhHHHHHHHH
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAIL--VRPSFIITI------SERNFIMEVV 146 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~--EG~~~~~~~------~~l~~il~~v 146 (165)
-..++.|-.||...+..-.+ +-...++.+-..++..+-..|-.|+.++.=++ .|....... .....++..+
T Consensus 41 ~~vR~~al~cLGl~~Lld~~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l 119 (298)
T PF12719_consen 41 PAVRELALKCLGLCCLLDKE-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKIL 119 (298)
T ss_pred HHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHH
Confidence 37889999999988877663 44444555555556668889989988888554 465542111 1246889999
Q ss_pred HhhcCCCCHHHHHHHHhcC
Q psy12576 147 CEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 147 ~~~l~D~~p~VR~aA~~al 165 (165)
.+.+.+.++.||.+|++++
T Consensus 120 ~~~l~~~~~~~~~~a~EGl 138 (298)
T PF12719_consen 120 TKFLDSENPELQAIAVEGL 138 (298)
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 9999988999999998763
No 147
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=76.37 E-value=4.8 Score=35.13 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=64.0
Q ss_pred HHHHHHHHhhccCCCC-CcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch
Q psy12576 55 LVPILTQKLTKQEELD-DEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI 133 (165)
Q Consensus 55 l~p~ll~~l~~~~ed~-dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~ 133 (165)
-||+++++|...++|- |..-|.....|+-.=+.=-..++--.+.++|..+.++- .+-..-+-+.+.|+.+.-|-.+.
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCCCCCC
Confidence 4666777776543221 11125333332211111111222225677777665221 23345578899999999998775
Q ss_pred hchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 134 ITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 134 ~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
-..+.+.+.+|.+.+.+..-+|.|-.-||-|
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WA 266 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWA 266 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4555788999999999887777777777755
No 148
>KOG1820|consensus
Probab=75.65 E-value=10 Score=36.29 Aligned_cols=79 Identities=22% Similarity=0.211 Sum_probs=62.8
Q ss_pred CchhhHHHHHHHHHHHHcCCcch---hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMV---PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~---~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
-++..-|++||..||..++.... -.++|-+-..+..--...|++.+-++=.++++ ..+..+++.|..++.
T Consensus 309 ~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk 381 (815)
T KOG1820|consen 309 INVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS-------TPLSKMSEAILEALK 381 (815)
T ss_pred hhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhc
Confidence 57788899999999999995322 33445555566666788999999999988872 358888999999999
Q ss_pred CCCHHHHHH
Q psy12576 152 SPDTQIRVA 160 (165)
Q Consensus 152 D~~p~VR~a 160 (165)
+.+|.+|.-
T Consensus 382 ~knp~~k~~ 390 (815)
T KOG1820|consen 382 GKNPQIKGE 390 (815)
T ss_pred CCChhhHHH
Confidence 999999865
No 149
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=75.41 E-value=7.9 Score=31.78 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=46.1
Q ss_pred HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC-C-CCHHHHHHHHhcC
Q psy12576 100 ILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ-S-PDTQIRVAALQCL 165 (165)
Q Consensus 100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~-D-~~p~VR~aA~~al 165 (165)
.++.|.+.+.++++..|.-|+.|+..++..... ...+..-++.||+.+. + -+..|+.+++.+|
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en---~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL 119 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSVNDEN---QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLL 119 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh---HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 678888899999999999999999988865433 1234455666676654 3 3788888887654
No 150
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=74.92 E-value=8.7 Score=29.76 Aligned_cols=101 Identities=19% Similarity=0.209 Sum_probs=66.7
Q ss_pred HHHHHhHHHHHHHHHhhccCCC----C-------CcCCCchhhHHHHHHHHHHHHcCCc-chhhHHHHHhhhcccCchHH
Q psy12576 48 AKGALQYLVPILTQKLTKQEEL----D-------DEDDWNPCKAAGVCLMLLSSCCEED-MVPHILPFVNANIEHADWRH 115 (165)
Q Consensus 48 ~~~~~~~l~p~ll~~l~~~~ed----~-------dddew~~~~~a~~~Ld~la~~~~~~-i~~~vl~~i~~~l~~~dw~~ 115 (165)
++..++.++|.++.-..-.+|- + -||.-..+|+|..||..+=..+... -+..++..+..++.+ +.-.
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 3445567788777655532221 0 1455688999999999997777743 356678999999998 7788
Q ss_pred HHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576 116 RDAALMSFGAILVRPSFIITISERNFIMEVVCEAT 150 (165)
Q Consensus 116 R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l 150 (165)
|--+.+-+.-++.-+...... .++.+++.+-..+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~-~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQ-RLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHH-CCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHh
Confidence 888888888887766654433 4666666544444
No 151
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=74.87 E-value=13 Score=31.74 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=58.2
Q ss_pred HHHHHHHHcC-CcchhhHHHHHhhhccc--C-chHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc---------
Q psy12576 84 CLMLLSSCCE-EDMVPHILPFVNANIEH--A-DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT--------- 150 (165)
Q Consensus 84 ~Ld~la~~~~-~~i~~~vl~~i~~~l~~--~-dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l--------- 150 (165)
+|..|..--| ..++|.++.||.+.+.. . ++..-..-+-...+++.-..- .+..|++++||.++..+
T Consensus 198 aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l-~le~Ylh~Lip~vltclv~~~l~~~~ 276 (343)
T cd08050 198 ALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL-HLEPYLHQLIPSVLTCLVAKQLCSRP 276 (343)
T ss_pred HHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC-chHHhHHHHHHHHHHHhhhHhhcCCC
Confidence 4888888888 68999999999775542 2 566666667777788876655 46789999999999887
Q ss_pred -CCCCHHHHHHHHh
Q psy12576 151 -QSPDTQIRVAALQ 163 (165)
Q Consensus 151 -~D~~p~VR~aA~~ 163 (165)
.+.|-.+|.-|..
T Consensus 277 ~~~~h~~LRd~AA~ 290 (343)
T cd08050 277 PDDNHWALRDYAAR 290 (343)
T ss_pred CCchHHHHHHHHHH
Confidence 2344578877754
No 152
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.13 E-value=8.5 Score=35.83 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=57.6
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.++.+++-++-.++.+.|-..|+-.+--++.+++-..+ +-...-+.++..+.+.+-|-++.||--|..||
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L 156 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVL 156 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 47788888888899999999999888888888887666 33344577788888899999999999998875
No 153
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=73.90 E-value=8.8 Score=26.58 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHH
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFV 104 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i 104 (165)
+.++.++++.|.+. |.-.+-+|-++|..|+...|+.++|.++...
T Consensus 42 ~~il~l~l~~L~d~-------DsyVYL~aI~~L~~La~~~p~~vl~~L~~~y 86 (92)
T PF10363_consen 42 PKILDLFLSQLKDE-------DSYVYLNAIKGLAALADRHPDEVLPILLDEY 86 (92)
T ss_pred HHHHHHHHHHcCCC-------CchHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 45666666655522 3577889999999999999998999888654
No 154
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=73.86 E-value=41 Score=26.29 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=70.5
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHH---HHhHHHHHHHHHhhccCCCCCcCCCchh
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKG---ALQYLVPILTQKLTKQEELDDEDDWNPC 78 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~l~p~ll~~l~~~~ed~dddew~~~ 78 (165)
++.+..++..|..+..++-+.-...... |-+.. .+.+.--.|... .+-.+=-.|+..|.... .-..-
T Consensus 50 ~Dp~~kvR~aA~~~l~~lL~gsk~~L~~---Ae~~~-~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~------~~~~l 119 (182)
T PF13251_consen 50 KDPSPKVRAAAASALAALLEGSKPFLAQ---AEESK-GPSGSFTSLSSTLASMIMELHRGLLLALQAEK------SPPVL 119 (182)
T ss_pred cCCchhHHHHHHHHHHHHHHccHHHHHH---HHhcC-CCCCCcccHHHHHHHHHHHHHHHHHHHHhccc------ccHHH
Confidence 4567778889999888888752111111 21111 111000001111 11223334444444211 13444
Q ss_pred hHHHHHHHHHHHHcC-C----cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 79 KAAGVCLMLLSSCCE-E----DMVPHILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 79 ~~a~~~Ld~la~~~~-~----~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
....+||..+.++.| . .+++.++..+...+.+.|...|.+++.++|++.-
T Consensus 120 ~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 567788888888888 4 3678888888889999999999999999999874
No 155
>KOG4653|consensus
Probab=73.83 E-value=19 Score=34.79 Aligned_cols=101 Identities=14% Similarity=0.188 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhccc--CchHHHHHHHHHHHHhhcCCc
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH--ADWRHRDAALMSFGAILVRPS 131 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~--~dw~~R~Aa~~Alg~i~EG~~ 131 (165)
.++.+.++++.. +|.-.+-.+-+.+-.|...+|+.|+|.+..+-.+.-.. .|-+.|-+ =||+-++.--+
T Consensus 768 kvl~i~ld~Lkd-------edsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~G 838 (982)
T KOG4653|consen 768 KVLAIALDTLKD-------EDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALG 838 (982)
T ss_pred HHHHHHHHHhcc-------cCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHH--HHHHHHHHHhc
Confidence 444555555542 12344555555566777779999999999865443333 35455544 67777777666
Q ss_pred chhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 132 FIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 132 ~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
+ +..+|+..+......+..||+-+-|..++..
T Consensus 839 e-l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~ 870 (982)
T KOG4653|consen 839 E-LVFKYKAVLINTFLSGVREPDHEFRASSLAN 870 (982)
T ss_pred c-HHHHHHHHHHHHHHHhcCCchHHHHHhHHHH
Confidence 6 3445899999999999999999889887754
No 156
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=72.77 E-value=33 Score=25.99 Aligned_cols=47 Identities=9% Similarity=0.079 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHhh--cCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576 113 WRHRDAALMSFGAIL--VRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL 162 (165)
Q Consensus 113 w~~R~Aa~~Alg~i~--EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~ 162 (165)
-.++.+.+-|+-.|. .|.+. ..++++|+|.+++.++...++.|..-+
T Consensus 101 s~~h~~vv~ai~~If~~l~~~c---v~~L~~viP~~l~~i~~~~~~~~e~~~ 149 (160)
T PF11865_consen 101 SSHHTAVVQAIMYIFKSLGLKC---VPYLPQVIPIFLRVIRTCPDSLREFYF 149 (160)
T ss_pred HHHHHHHHHHHHHHHHhcCcCc---hhHHHHHhHHHHHHHHhCCHHHHHHHH
Confidence 344557788888888 44433 468999999999999877778777644
No 157
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=72.54 E-value=1.8 Score=22.82 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=16.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHH
Q psy12576 140 NFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 140 ~~il~~v~~~l~D~~p~VR~aA 161 (165)
+.|+|.|.+.|++|+.-+|-|.
T Consensus 2 ~~IVpyi~~~L~N~~LAl~lA~ 23 (24)
T PF09268_consen 2 ENIVPYILNTLQNPDLALRLAS 23 (24)
T ss_dssp TTHHHHHHHTT--HHHHHHHHH
T ss_pred ccchhHHHhccCCHHHHHHHhc
Confidence 3589999999999999888764
No 158
>KOG1020|consensus
Probab=71.12 E-value=17 Score=37.12 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=53.3
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
.-+.+.+..|-..+..+-...|--|+.|++.|.|-.+. ++ -++.+-..|-..+.|.+..||.||+.
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~-vL--~~~dvq~~Vh~R~~DssasVREAald 877 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPS-VL--SRPDVQEAVHGRLNDSSASVREAALD 877 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH-hh--cCHHHHHHHHHhhccchhHHHHHHHH
Confidence 45666677777777888899999999999999996654 34 36777778888899999999999975
No 159
>KOG2025|consensus
Probab=70.56 E-value=21 Score=33.90 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=57.5
Q ss_pred CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 94 EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 94 ~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
++++..++.|+-....+.+-..|.-.+.-+.-++... ..+-..--+.+...+...+.|-.|-||--|..||
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aL 150 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLAL 150 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 4688999999999999999999988888888887622 2233344677888889999999999999998875
No 160
>KOG1061|consensus
Probab=70.25 E-value=12 Score=35.34 Aligned_cols=103 Identities=12% Similarity=0.071 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPS 131 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~ 131 (165)
|.+--.....+.+.-+ |..|..+..|. +.-.+++ +.+...++.-+...+.+.++..|+++..+....-.--.
T Consensus 81 P~~a~~avnt~~kD~~---d~np~iR~lAl----rtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~ 153 (734)
T KOG1061|consen 81 PDLAILAVNTFLKDCE---DPNPLIRALAL----RTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP 153 (734)
T ss_pred chHHHhhhhhhhccCC---CCCHHHHHHHh----hceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh
Confidence 4555555555554322 23476665555 3333555 67888888778889999999999998888777664333
Q ss_pred chhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 132 FIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 132 ~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+. -+-..+++.+-..+.|++|.|-..|..+|
T Consensus 154 ~~---~~~~gl~~~L~~ll~D~~p~VVAnAlaaL 184 (734)
T KOG1061|consen 154 DL---VEDSGLVDALKDLLSDSNPMVVANALAAL 184 (734)
T ss_pred hh---ccccchhHHHHHHhcCCCchHHHHHHHHH
Confidence 21 12344555555666699999988887654
No 161
>KOG2137|consensus
Probab=70.08 E-value=10 Score=35.60 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=55.0
Q ss_pred HHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhh-cCCCCHHHHHH
Q psy12576 83 VCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEA-TQSPDTQIRVA 160 (165)
Q Consensus 83 ~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~-l~D~~p~VR~a 160 (165)
+=+|.|.+-++ +++...++|++...+.+.+-+..+.++-.+..++|-.+-.. -.+.|+|.|-+. ++..+..||..
T Consensus 372 e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~---vk~~ilP~l~~l~~~tt~~~vkvn 448 (700)
T KOG2137|consen 372 ENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF---VKQAILPRLKNLAFKTTNLYVKVN 448 (700)
T ss_pred hhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH---HHHHHHHHhhcchhcccchHHHHH
Confidence 33566677777 57888888888888888888888888888888888776421 234455554444 45677777777
Q ss_pred HHhcC
Q psy12576 161 ALQCL 165 (165)
Q Consensus 161 A~~al 165 (165)
++-|+
T Consensus 449 ~L~c~ 453 (700)
T KOG2137|consen 449 VLPCL 453 (700)
T ss_pred HHHHH
Confidence 76553
No 162
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.97 E-value=11 Score=34.87 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=34.0
Q ss_pred chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576 96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
-.|+.|..+++++++++-+.|-||++.+|...-|...
T Consensus 447 E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~ 483 (881)
T COG5110 447 ERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA 483 (881)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH
Confidence 3689999999999999999999999999999988865
No 163
>KOG1078|consensus
Probab=69.96 E-value=36 Score=32.57 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHcCCcchhh-HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576 78 CKAAGVCLMLLSSCCEEDMVPH-ILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQ 156 (165)
Q Consensus 78 ~~~a~~~Ld~la~~~~~~i~~~-vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~ 156 (165)
..-+..-|-+|+.-.|....|- -..||-+..-=++...|-||+-|+.-++-|+.. -++.|.-.+.+.+.|++-.
T Consensus 444 ~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~Dde 518 (865)
T KOG1078|consen 444 TQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDE 518 (865)
T ss_pred hHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHH
Confidence 3567778888888888766664 557777777778888999999999999944433 2445555555566799999
Q ss_pred HHHHHHhcC
Q psy12576 157 IRVAALQCL 165 (165)
Q Consensus 157 VR~aA~~al 165 (165)
||..|-++|
T Consensus 519 vRdrAtf~l 527 (865)
T KOG1078|consen 519 VRDRATFYL 527 (865)
T ss_pred HHHHHHHHH
Confidence 999986653
No 164
>KOG1060|consensus
Probab=69.93 E-value=17 Score=34.78 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
+.++|-.+++++.++ -...|---.-|=+.|..=++- --.-+..+++.+.++|.-.|-.|+-++++|=
T Consensus 70 S~~Fp~VVKNVaskn-------~EVKkLVyvYLlrYAEeqpdL-ALLSIntfQk~L~DpN~LiRasALRvlSsIR----- 136 (968)
T KOG1060|consen 70 SLLFPAVVKNVASKN-------IEVKKLVYVYLLRYAEEQPDL-ALLSINTFQKALKDPNQLIRASALRVLSSIR----- 136 (968)
T ss_pred HHHHHHHHHHhhccC-------HHHHHHHHHHHHHHhhcCCCc-eeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc-----
Confidence 456777777777544 345566666677777777752 2223456789999999999999999998763
Q ss_pred hhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 133 IITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 133 ~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.....+-+|-.|-+...||.|.||..|.+|
T Consensus 137 --vp~IaPI~llAIk~~~~D~s~yVRk~AA~A 166 (968)
T KOG1060|consen 137 --VPMIAPIMLLAIKKAVTDPSPYVRKTAAHA 166 (968)
T ss_pred --hhhHHHHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 222345666677777889999999999875
No 165
>KOG1837|consensus
Probab=69.90 E-value=14 Score=37.68 Aligned_cols=82 Identities=9% Similarity=0.029 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576 78 CKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI 157 (165)
Q Consensus 78 ~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~V 157 (165)
.+....|+-.++.+-++. ++++..-+-....++..+.|..|+.++-.+.+-.++... ..+++++|++-+.+.|-+-.|
T Consensus 1521 ~~~li~~i~~~~~a~~~d-~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~-~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1521 SKLLIAEIASDSVADKDD-LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVI-VLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred HHHHHHHHHhhccCChhh-hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhH-HhhhhhhHHHHHHHhhhHHHH
Confidence 445555666666666644 666665555666778888999999999888887777655 479999999999999988877
Q ss_pred HHHH
Q psy12576 158 RVAA 161 (165)
Q Consensus 158 R~aA 161 (165)
-..+
T Consensus 1599 e~~~ 1602 (1621)
T KOG1837|consen 1599 ECLC 1602 (1621)
T ss_pred HHHH
Confidence 6543
No 166
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=69.57 E-value=25 Score=24.91 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=49.4
Q ss_pred HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC--CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE--EDMVPHILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~--~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
.++.++|.++..+..... -...-++..-+..|+...+ ++++..++..+-++.....- .+.++++++++..
T Consensus 3 ~l~~lLP~l~~~L~~s~~------~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSS------PDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHHHHHccCCc------HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 356789999999984331 1234455566667777777 46777777777766665554 5679999999996
Q ss_pred CC
Q psy12576 129 RP 130 (165)
Q Consensus 129 G~ 130 (165)
.-
T Consensus 75 ~q 76 (121)
T PF12397_consen 75 SQ 76 (121)
T ss_pred cc
Confidence 55
No 167
>KOG0392|consensus
Probab=69.36 E-value=9.4 Score=38.25 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=71.0
Q ss_pred HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhccc-CchHHHHHHHHHHHHhhcCCcch
Q psy12576 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH-ADWRHRDAALMSFGAILVRPSFI 133 (165)
Q Consensus 55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~-~dw~~R~Aa~~Alg~i~EG~~~~ 133 (165)
++|.++..+.... -..+.+++.|+..++..--.++.-.+..-+...+.+ .+-..|.+|...++.+..+-...
T Consensus 817 ~l~~l~~~~~s~~-------~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~ 889 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIH-------IAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVG 889 (1549)
T ss_pred hhhHHHHhcccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccc
Confidence 4555665555422 466788889999987765533433333333333433 34567789999999998877764
Q ss_pred hchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 134 ITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 134 ~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
. -.+..-+++.+++.+.|..-.||.||-.+
T Consensus 890 l-~~~~~Llv~pllr~msd~~d~vR~aat~~ 919 (1549)
T KOG0392|consen 890 L-VPYNPLLVVPLLRRMSDQIDSVREAATKV 919 (1549)
T ss_pred c-cccceeehhhhhcccccchHHHHHHHHHH
Confidence 3 35888999999999999999999998543
No 168
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=69.15 E-value=14 Score=25.52 Aligned_cols=55 Identities=18% Similarity=0.112 Sum_probs=40.8
Q ss_pred ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC--HHHHHHHHhc
Q psy12576 109 EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD--TQIRVAALQC 164 (165)
Q Consensus 109 ~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~--p~VR~aA~~a 164 (165)
.++.|..|+-|---++.|+.-.+.. .....+.|+..+.+.+.||+ ..++|-|+.+
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~-~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~g 72 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSS-YPTLQPRITRTLLKALLDPKKPLGTHYGAIVG 72 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3568999999999999998755542 22356789999999998776 5567777654
No 169
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=68.93 E-value=24 Score=25.71 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=47.5
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhH-HHHHHHHHhhcC---CCCHHHHHHHHh
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISER-NFIMEVVCEATQ---SPDTQIRVAALQ 163 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l-~~il~~v~~~l~---D~~p~VR~aA~~ 163 (165)
-..++..+.+.|.+.+++...-|+..+-+++.-|+..+....- ..++..+.+.+. ..++.||.-++.
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ 105 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALE 105 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 4557788899999999999999999999999999873322111 234444455554 358889877654
No 170
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=68.66 E-value=40 Score=28.26 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=53.8
Q ss_pred HHHHHHHcC---CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc----CCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576 85 LMLLSSCCE---EDMVPHILPFVNANIEHADWRHRDAALMSFGAILV----RPSFIITISERNFIMEVVCEATQSPDTQI 157 (165)
Q Consensus 85 Ld~la~~~~---~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E----G~~~~~~~~~l~~il~~v~~~l~D~~p~V 157 (165)
++.++.++. ..+-+.++.++.+.+++.....|++=+.++|.+.. +-........++.++..+-+....|-+..
T Consensus 44 l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~ 123 (339)
T PF12074_consen 44 LSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSA 123 (339)
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 556655553 45678899999999999998899999999999985 32223344456666666666667887765
Q ss_pred H
Q psy12576 158 R 158 (165)
Q Consensus 158 R 158 (165)
.
T Consensus 124 ~ 124 (339)
T PF12074_consen 124 Q 124 (339)
T ss_pred c
Confidence 4
No 171
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=68.43 E-value=59 Score=27.52 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHcCCc-chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCc-----------chhchHhHHHHHH
Q psy12576 77 PCKAAGVCLMLLSSCCEED-MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPS-----------FIITISERNFIME 144 (165)
Q Consensus 77 ~~~~a~~~Ld~la~~~~~~-i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~-----------~~~~~~~l~~il~ 144 (165)
...-.-..|+.+...+|++ ....++-.+ + .++..|..|+.-+-.-.-.-. .....+.-.-++.
T Consensus 154 ~~~~~~~ll~~l~~~v~~~~F~~~lwl~i---i--~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~ 228 (307)
T PF04118_consen 154 FFDRTLKLLDKLKEAVGDKYFWQCLWLCI---I--TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVR 228 (307)
T ss_pred HHHHHHHHHHHHHHhcChhHHHHHHHHHH---h--cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHH
Confidence 3455567799999999965 222222222 2 345588888887765543322 1233445667889
Q ss_pred HHHhhcCCCCHHHHHHHHh
Q psy12576 145 VVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 145 ~v~~~l~D~~p~VR~aA~~ 163 (165)
.++.+++|++..|+..+++
T Consensus 229 al~~~L~D~~iLVqR~~LD 247 (307)
T PF04118_consen 229 ALCACLEDENILVQRGFLD 247 (307)
T ss_pred HHHHHhCCchHHHHHHHHH
Confidence 9999999999999998865
No 172
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=68.37 E-value=60 Score=25.98 Aligned_cols=105 Identities=23% Similarity=0.269 Sum_probs=66.1
Q ss_pred HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhh--HHHHHhhhcccCchHHH--HHHHHHHHHh
Q psy12576 51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPH--ILPFVNANIEHADWRHR--DAALMSFGAI 126 (165)
Q Consensus 51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~--vl~~i~~~l~~~dw~~R--~Aa~~Alg~i 126 (165)
.++.+++.+-..+. ++ +...+.+-+|+.|+..++..++.. .+..+.+.+ +.+.+.. ++-.--|+-+
T Consensus 118 ~g~~ll~~ls~~L~-~~--------~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l-~~~~rp~v~~~l~~l~~l~ 187 (234)
T PF12530_consen 118 HGVDLLPLLSGCLN-QS--------CDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL-SLDYRPLVLKSLCSLFALV 187 (234)
T ss_pred hHHHHHHHHHHHHh-cc--------ccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc-CCccchHHHHHHHHHHHHh
Confidence 45667777777775 11 112366678999999998766643 556677777 3333333 2211223333
Q ss_pred hcCCcch-hchHhHHHHHHHHHhhcCCCC-------HHHHHHHHhcC
Q psy12576 127 LVRPSFI-ITISERNFIMEVVCEATQSPD-------TQIRVAALQCL 165 (165)
Q Consensus 127 ~EG~~~~-~~~~~l~~il~~v~~~l~D~~-------p~VR~aA~~al 165 (165)
..|.-+. .....-..++..+.+...+.+ ++||.+|+++|
T Consensus 188 ~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~al 234 (234)
T PF12530_consen 188 PQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFEAL 234 (234)
T ss_pred ccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhcC
Confidence 3444443 333456889999999998777 79999999876
No 173
>KOG2062|consensus
Probab=68.35 E-value=8.5 Score=36.54 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=12.0
Q ss_pred HHhhcC-CCCHHHHHHHHhcC
Q psy12576 146 VCEATQ-SPDTQIRVAALQCL 165 (165)
Q Consensus 146 v~~~l~-D~~p~VR~aA~~al 165 (165)
+++.|. +-||+||+.|..||
T Consensus 593 ~V~lLses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 593 TVSLLSESYNPHVRYGAAMAL 613 (929)
T ss_pred HHHHHhhhcChhhhhhHHHHH
Confidence 344443 66777777776554
No 174
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=68.24 E-value=10 Score=29.35 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 112 DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 112 dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
---.|++|+=++.++++-|.... .+..++..|..|+.| +.-||.-++.
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~---~~~~~~~~v~~GL~D-~~DIk~L~~~ 87 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRI---DISEFLDRVEAGLKD-EHDIKMLCHL 87 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS----HHHHHHHHHHTTSS--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHhhcCC-cHHHHHHHHH
Confidence 35689999999999999887643 377889999999999 9888876653
No 175
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=67.63 E-value=22 Score=25.98 Aligned_cols=68 Identities=18% Similarity=0.122 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC--cchh--hHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE--DMVP--HILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~--~i~~--~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
.++..|+++|.+.+ +-+.--.|..=|..+...+|. .++. -+-..|-+.+.++|...|+-|++|+.-++
T Consensus 43 ~llk~L~~lL~~s~------d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSD------DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHH------HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC------CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 46777888885332 122233455557777888883 4553 25577888999999999999999998765
No 176
>KOG1061|consensus
Probab=67.36 E-value=22 Score=33.65 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
+.|+|-++..+...| -...|--.--|...|..=|+ .--...+++..-..+++|..|--|+-.+|++- -+
T Consensus 48 SslF~dvvk~~~T~d-------lelKKlvyLYl~nYa~~~P~-~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~---v~ 116 (734)
T KOG1061|consen 48 SSLFPDVVKCMQTRD-------LELKKLVYLYLMNYAKGKPD-LAILAVNTFLKDCEDPNPLIRALALRTMGCLR---VD 116 (734)
T ss_pred HhhhHHHHhhcccCC-------chHHHHHHHHHHHhhccCch-HHHhhhhhhhccCCCCCHHHHHHHhhceeeEe---eh
Confidence 346666666665422 34444444444444544443 33445577778889999999976666655543 22
Q ss_pred hhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 133 IITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 133 ~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
+-.+.+..-+.++++|.+|-||.+|..|
T Consensus 117 ----~i~ey~~~Pl~~~l~d~~~yvRktaa~~ 144 (734)
T KOG1061|consen 117 ----KITEYLCDPLLKCLKDDDPYVRKTAAVC 144 (734)
T ss_pred ----HHHHHHHHHHHHhccCCChhHHHHHHHH
Confidence 2456777888999999999999998765
No 177
>KOG1058|consensus
Probab=67.18 E-value=5 Score=38.09 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=43.4
Q ss_pred HHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 102 PFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 102 ~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
..+.+.++||+=..| |+.+-+..+-.-...++.++|.|...|.++|+-||..|+.|+
T Consensus 102 na~RkDLQHPNEyiR-------G~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilai 158 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIR-------GSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAI 158 (948)
T ss_pred HHHhhhccCchHhhc-------chhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheee
Confidence 567789999997777 444444443222335799999999999999999999998875
No 178
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.07 E-value=54 Score=31.43 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=66.9
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCc-ch-hc---hHhHHHHHHHHHhhc
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPS-FI-IT---ISERNFIMEVVCEAT 150 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~-~~-~~---~~~l~~il~~v~~~l 150 (165)
+-.+.-.--|..|+...|+-.+... ..+.+.+.|+....|-+-+=+.|.+.+.-. +. +. +..++.+|..+.+++
T Consensus 277 ~Gpk~islFl~kls~l~p~i~lrq~-~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl 355 (1128)
T COG5098 277 SGPKDISLFLNKLSELSPGIMLRQY-EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERL 355 (1128)
T ss_pred cChHHHHHHHHHHhhcCchHHHHHH-HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHh
Confidence 3345666678888888887555554 445578899999999999999998886333 22 22 235889999999999
Q ss_pred CCCCHHHHHHHHhc
Q psy12576 151 QSPDTQIRVAALQC 164 (165)
Q Consensus 151 ~D~~p~VR~aA~~a 164 (165)
+|..|-+|+-|++.
T Consensus 356 ~D~~py~RtKalqv 369 (1128)
T COG5098 356 SDTYPYTRTKALQV 369 (1128)
T ss_pred hccchHHHHHHHHH
Confidence 99999999999874
No 179
>KOG2081|consensus
Probab=67.03 E-value=20 Score=32.76 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=58.8
Q ss_pred CCchhhHHHHHHHHHHHHcC---CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576 74 DWNPCKAAGVCLMLLSSCCE---EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT 150 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~~---~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l 150 (165)
.|....|+..+|..++..++ +.++|.|+..|.+.= -+ -+.|+++++-+|.+.|=.... ..-++.+++.+..++
T Consensus 402 ~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp-~Q-~~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~~~~~ 477 (559)
T KOG2081|consen 402 SWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLP-EQ-APLRYTSILLLGEYSEWVEQH--PELLEPVLRYIRQGL 477 (559)
T ss_pred chHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCc-cc-hhHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHh
Confidence 59999999999999999987 368999998775432 22 239999999999999866543 224677777777777
Q ss_pred CCCC
Q psy12576 151 QSPD 154 (165)
Q Consensus 151 ~D~~ 154 (165)
++..
T Consensus 478 ~~~~ 481 (559)
T KOG2081|consen 478 QLKR 481 (559)
T ss_pred hhcc
Confidence 7655
No 180
>KOG1062|consensus
Probab=67.02 E-value=9.6 Score=36.31 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=51.5
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+++-.+..-+++-++|.+-..--.|+.|||.|+ +.. ..+.+.|-|-+.++.++|-||.-|..|+
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~---s~E----mardlapeVe~Ll~~~~~~irKKA~Lca 166 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC---SPE----MARDLAPEVERLLQHRDPYIRKKAALCA 166 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccC---CHH----HhHHhhHHHHHHHhCCCHHHHHHHHHHH
Confidence 466667788889999999888888888888886 332 3567788888999999999999888773
No 181
>KOG1058|consensus
Probab=66.43 E-value=5.6 Score=37.79 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 83 VCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 83 ~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
..|-.|...-..+++.+++|.|..++.+.....|+-|++|++.|---
T Consensus 118 ~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 118 STLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred hhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 34555555444589999999999999999999999999999999753
No 182
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=65.98 E-value=55 Score=24.71 Aligned_cols=105 Identities=15% Similarity=0.080 Sum_probs=58.5
Q ss_pred HHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcch-hhHH---HHHhhhccc-CchHHHHHHHHHHH
Q psy12576 50 GALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMV-PHIL---PFVNANIEH-ADWRHRDAALMSFG 124 (165)
Q Consensus 50 ~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~-~~vl---~~i~~~l~~-~dw~~R~Aa~~Alg 124 (165)
..+..++--+.+++...+ ...+-+|..-+..+.+..|-+++ ...- ..+.+.++. .....+++++.+++
T Consensus 21 ~~l~~l~~ri~~LL~s~~-------~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~ 93 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKS-------AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLT 93 (165)
T ss_pred HHHHHHHHHHHHHhCCCC-------hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345567777777776433 11122333333344444432333 3222 222333443 44667899999999
Q ss_pred HhhcCCcc------hhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 125 AILVRPSF------IITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 125 ~i~EG~~~------~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
.|.+-... .+..+.++.+++.+++.+++ +.+...++.
T Consensus 94 ~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~ 136 (165)
T PF08167_consen 94 RLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALD 136 (165)
T ss_pred HHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHH
Confidence 99863332 24566788999988888876 444444444
No 183
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=65.31 E-value=62 Score=25.01 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=51.1
Q ss_pred cHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHH
Q psy12576 44 SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSF 123 (165)
Q Consensus 44 ~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Al 123 (165)
.++|..+. |..+|.++..+. |+.......+...|..--+ --....++++...+.+ ...|+-|+-.+
T Consensus 30 ~R~~~~~~-p~aL~~~l~sv~----------w~~~~~v~e~~~lL~~W~~-i~~~~aLeLL~~~f~d--~~VR~yAV~~L 95 (171)
T cd00872 30 LRHECRKK-PQALPKLLLSVK----------WNKRDDVAQMYQLLKRWPK-LKPEQALELLDCNFPD--EHVREFAVRCL 95 (171)
T ss_pred HHHHHhhC-cHHHHHHHhhCC----------CCCHHHHHHHHHHHHCCCC-CCHHHHHHHCCCcCCC--HHHHHHHHHHH
Confidence 34455443 677777766543 6555555555555554322 1244567777777765 67999999887
Q ss_pred HHhhcCCcchhchHhHHHHHHHH
Q psy12576 124 GAILVRPSFIITISERNFIMEVV 146 (165)
Q Consensus 124 g~i~EG~~~~~~~~~l~~il~~v 146 (165)
..+. +..+..+++++++.+
T Consensus 96 ~~~s----d~eL~~yL~QLVQaL 114 (171)
T cd00872 96 EKLS----DDELLQYLLQLVQVL 114 (171)
T ss_pred HhCC----HHHHHHHHHHHHHHH
Confidence 7643 444555777777654
No 184
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=63.48 E-value=9.8 Score=27.03 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=29.4
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI 133 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~ 133 (165)
+|.+|... ++.+.+|..|+.|++|+-.++||+.+.
T Consensus 30 i~liL~~c--~iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 30 IPLILSCC--NIDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred hHHHHHhc--CCCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 67776653 667789999999999999999999874
No 185
>KOG0414|consensus
Probab=62.63 E-value=82 Score=31.60 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=67.4
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc----CCc-chhchHhHHHHHHHHHhh
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILV----RPS-FIITISERNFIMEVVCEA 149 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E----G~~-~~~~~~~l~~il~~v~~~ 149 (165)
-...+.-+.-|-.+|..+|.-+++.+--|+. .+.++....|.|-+=++|.+.. +.. +.+.+..++.++..+.+.
T Consensus 289 ~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~-lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~er 367 (1251)
T KOG0414|consen 289 CAGPKIVGNFLVELSERVPKLMLRQLTLLVD-LLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRER 367 (1251)
T ss_pred ccchhhHHHHHHHHHHHhHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHH
Confidence 3445666677999999999877777777665 8888999999999888886652 222 234444566799999999
Q ss_pred cCCCCHHHHHHHHh
Q psy12576 150 TQSPDTQIRVAALQ 163 (165)
Q Consensus 150 l~D~~p~VR~aA~~ 163 (165)
+.|-++-||+-+++
T Consensus 368 l~Dvsa~vRskVLq 381 (1251)
T KOG0414|consen 368 LLDVSAYVRSKVLQ 381 (1251)
T ss_pred hhcccHHHHHHHHH
Confidence 99999999998875
No 186
>KOG1243|consensus
Probab=60.76 E-value=45 Score=31.36 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=45.8
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
--++|++.+.+.++|=..| +.-|..|-..+.-..-+..-++|+|.+..++.|-++.+|..++.+
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR---~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlks 392 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIR---LLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKS 392 (690)
T ss_pred cchhhhHHHHhcCcchHHH---HHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHH
Confidence 3477888888999886666 444455544444322222468999999999999999999987654
No 187
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=60.12 E-value=33 Score=29.57 Aligned_cols=101 Identities=13% Similarity=0.170 Sum_probs=56.6
Q ss_pred HHHHHHhHHHHHHHHHhhcc--CCCCCc-CCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHh-hhcccCc-hHHHHH
Q psy12576 47 YAKGALQYLVPILTQKLTKQ--EELDDE-DDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVN-ANIEHAD-WRHRDA 118 (165)
Q Consensus 47 ~~~~~~~~l~p~ll~~l~~~--~ed~dd-dew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~-~~l~~~d-w~~R~A 118 (165)
|+..++..|+|.++.++... ..+++| +-...++.|+..|++.-..+|. .+-|.+..-+. .++..+- ..-.++
T Consensus 270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YG 349 (450)
T COG5095 270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYG 349 (450)
T ss_pred eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhh
Confidence 45556677888777777642 223322 2347889999999998888884 34466654443 3333222 223478
Q ss_pred HHHHHHHhhcCCcchhchHhHHHHHHHHH
Q psy12576 119 ALMSFGAILVRPSFIITISERNFIMEVVC 147 (165)
Q Consensus 119 a~~Alg~i~EG~~~~~~~~~l~~il~~v~ 147 (165)
|+.+++.+.--.-.....+.++.-...|-
T Consensus 350 alkgls~l~ke~ir~~i~pn~~~y~rlv~ 378 (450)
T COG5095 350 ALKGLSILSKEVIRTVIKPNADYYVRLVN 378 (450)
T ss_pred hhhhhhhhchhheeeeeccchHHHHHHHH
Confidence 88888766532222233333444444333
No 188
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.07 E-value=38 Score=25.28 Aligned_cols=66 Identities=9% Similarity=-0.030 Sum_probs=50.1
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc-hHhHHHHHHHHHhhcCC-CCHHHHHHHHh
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT-ISERNFIMEVVCEATQS-PDTQIRVAALQ 163 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~-~~~l~~il~~v~~~l~D-~~p~VR~aA~~ 163 (165)
..++..|.+.+.+.+++.-.-|+.-+-+++.-|+..+. +---..++..+.+.+.+ .++.||.-.+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~ 103 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLRE 103 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 45778888999999999999999999999999997432 11235666666666666 78899876654
No 189
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=60.05 E-value=13 Score=26.32 Aligned_cols=49 Identities=8% Similarity=0.092 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcCCcchhch-HhHHHHHHHHHhhcC--CCCHHHHHHHHhcC
Q psy12576 116 RDAALMSFGAILVRPSFIITI-SERNFIMEVVCEATQ--SPDTQIRVAALQCL 165 (165)
Q Consensus 116 R~Aa~~Alg~i~EG~~~~~~~-~~l~~il~~v~~~l~--D~~p~VR~aA~~al 165 (165)
|..-+-.+|.++..+....-. .+++. +|.|++.+. |.+|-+|.-|.+|+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~G-i~liL~~c~iD~~nP~irEwai~ai 54 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGG-IPLILSCCNIDDHNPFIREWAIFAI 54 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCC-hHHHHHhcCCCcccHHHHHHHHHHH
Confidence 445566777777777653211 12344 777777765 88899999999885
No 190
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.04 E-value=16 Score=34.09 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=32.2
Q ss_pred ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 109 EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 109 ~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.|-+++.|.+...|||-.+-|-+.+... ..+-..+.|++--||.+|+-+
T Consensus 596 ~shN~hVR~g~AvaLGiacag~G~~~a~-------diL~~L~~D~~dfVRQ~AmIa 644 (926)
T COG5116 596 ESHNFHVRAGVAVALGIACAGTGDKVAT-------DILEALMYDTNDFVRQSAMIA 644 (926)
T ss_pred hccchhhhhhhHHHhhhhhcCCccHHHH-------HHHHHHhhCcHHHHHHHHHHH
Confidence 3567777877777777777776664332 222223458999999988754
No 191
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=58.53 E-value=31 Score=24.14 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=44.9
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
++.++.|+...+.|=.+..|.-|+..|..++|-+.+.....+-..+++..+..+.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 5678899999999999999999999999999988886344466677777666665
No 192
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=58.43 E-value=62 Score=30.40 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=13.9
Q ss_pred HHHhhcCCCCHHHHHHHHhcC
Q psy12576 145 VVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 145 ~v~~~l~D~~p~VR~aA~~al 165 (165)
.|.+++-=.|..||.||.+||
T Consensus 491 hIyNR~iLEN~ivRsaAv~aL 511 (898)
T COG5240 491 HIYNRLILENNIVRSAAVQAL 511 (898)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 334444445678999998885
No 193
>KOG1062|consensus
Probab=58.38 E-value=21 Score=34.13 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHH-HhhcCCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576 80 AAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFG-AILVRPSFIITISERNFIMEVVCEATQSPDTQI 157 (165)
Q Consensus 80 ~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg-~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~V 157 (165)
.-+-+|..+++.++.++.|.+.|-|++.++++++..|+=|++|.- .|---+ ...+.+++..-+.|.+.|.=|
T Consensus 123 vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P------~l~e~f~~~~~~lL~ek~hGV 195 (866)
T KOG1062|consen 123 VVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP------DLVEHFVIAFRKLLCEKHHGV 195 (866)
T ss_pred ehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc------hHHHHhhHHHHHHHhhcCCce
Confidence 445568899999998999999999999999999999966655544 443222 234555565566666666443
No 194
>KOG2137|consensus
Probab=56.51 E-value=60 Score=30.65 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=51.7
Q ss_pred CchhhHHHHHHHHHHHHcCC-cchhhHHHHHhh-hcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNA-NIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS 152 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~-~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D 152 (165)
-.....+.+.+-.++..+.- -+=..++|.|.. .+...+-..|...++|||.+++-++.. .-++.++|+ .+..+-
T Consensus 403 ~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~---~v~d~~lpi-~~~~~~ 478 (700)
T KOG2137|consen 403 VQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA---AVLDELLPI-LKCIKT 478 (700)
T ss_pred hhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH---HhHHHHHHH-HHHhcC
Confidence 45555566666666666662 334556677755 556788899999999999999777653 235666664 444444
Q ss_pred CCHHHH
Q psy12576 153 PDTQIR 158 (165)
Q Consensus 153 ~~p~VR 158 (165)
.+|.+-
T Consensus 479 ~dp~iv 484 (700)
T KOG2137|consen 479 RDPAIV 484 (700)
T ss_pred CCcHHH
Confidence 444443
No 195
>KOG1517|consensus
Probab=56.06 E-value=74 Score=31.80 Aligned_cols=102 Identities=15% Similarity=0.045 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-cch---hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-DMV---PHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-~i~---~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
.|+.++|+.|-. + .+|-..-=...||.+|=+.+.. ... .....-+-..+.++-+..|-||+.|||..+.+
T Consensus 599 ~li~iCle~lnd----~--~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 599 NLIGICLEHLND----D--PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cHHHHHHHHhcC----C--ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 455555554432 1 1455555566888888555542 211 12333344567788899999999999999986
Q ss_pred Ccch--hchHh-------------HHHHH----HHHHhhcCCCCHHHHHHH
Q psy12576 130 PSFI--ITISE-------------RNFIM----EVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 130 ~~~~--~~~~~-------------l~~il----~~v~~~l~D~~p~VR~aA 161 (165)
-++. ..+.. .+.++ ..++..++|..|.||..-
T Consensus 673 ~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 673 GSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred cccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 4221 01111 12222 256677889999999864
No 196
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=55.92 E-value=42 Score=27.62 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=29.6
Q ss_pred HHHHHhHHHHHHHHHhhccC----CCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHH
Q psy12576 48 AKGALQYLVPILTQKLTKQE----ELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFV 104 (165)
Q Consensus 48 ~~~~~~~l~p~ll~~l~~~~----ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i 104 (165)
+...+..++|.|+..|.+.- +..++++|+..-. ++-.||+.-...-+|+++.++
T Consensus 25 A~~~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~---a~~LLaq~re~~A~~~li~l~ 82 (249)
T PF06685_consen 25 AIEQREEITPELLKILEDAIERANELLDDEEYNLHFY---ALYLLAQFREERALPPLIRLF 82 (249)
T ss_pred HHHCHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHH---HHHHHHHHhhhhhHHHHHHHH
Confidence 44456789999999998632 2234456764332 233444443334444444443
No 197
>KOG1243|consensus
Probab=54.89 E-value=34 Score=32.15 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHH
Q psy12576 81 AGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIR 158 (165)
Q Consensus 81 a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR 158 (165)
=.+-++....++.+ .+-..++|.+...+.+.+...|+-.+.++..++.-.+...+ =..+|..+.+.-.|.|+-+|
T Consensus 350 LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L---n~Ellr~~ar~q~d~~~~ir 425 (690)
T KOG1243|consen 350 LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL---NGELLRYLARLQPDEHGGIR 425 (690)
T ss_pred HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh---cHHHHHHHHhhCccccCccc
Confidence 33445555667774 45578999999999999999999999999999975555322 23445544444335555444
No 198
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=54.30 E-value=32 Score=24.46 Aligned_cols=28 Identities=25% Similarity=0.454 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhhcCCCC----HHHHHHHHhcC
Q psy12576 138 ERNFIMEVVCEATQSPD----TQIRVAALQCL 165 (165)
Q Consensus 138 ~l~~il~~v~~~l~D~~----p~VR~aA~~al 165 (165)
..+.+++.+.+.+.... +.+..+++.|+
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l 110 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCL 110 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 35556666666554322 77777777663
No 199
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=54.07 E-value=88 Score=24.36 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=39.0
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHH
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVV 146 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v 146 (165)
|+.......++..|..=-+ --....+.++..++. +...|.-|+-.|.... +..+..+++++++.+
T Consensus 55 W~~~~e~~e~~~ll~~W~~-~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~~~~----d~~l~~yLpQLVQaL 119 (184)
T smart00145 55 WSDADEVAQALSLLKKWAP-LDPEDALELLSPKFP--DPFVRAYAVERLESAS----DEELLLYLLQLVQAL 119 (184)
T ss_pred CCCHHHHHHHHHHHHcCCC-CCHHHHHHHhCccCC--CHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHH
Confidence 7655555556665554332 123446777777776 5678888887775533 334445677777664
No 200
>KOG1059|consensus
Probab=53.39 E-value=70 Score=30.60 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=46.9
Q ss_pred chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
.+...++-+...+.+.|...|+-|++|+|-|+--=... ...--..|++.|.|.++.+|--|++
T Consensus 296 siqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~-----Vqa~kdlIlrcL~DkD~SIRlrALd 358 (877)
T KOG1059|consen 296 SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA-----VQAHKDLILRCLDDKDESIRLRALD 358 (877)
T ss_pred HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH-----HHHhHHHHHHHhccCCchhHHHHHH
Confidence 45556666777888999999999999999998532222 2333557788899999999988875
No 201
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=52.58 E-value=45 Score=26.25 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=36.8
Q ss_pred HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 100 ILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
..+.+.+...|++--.|++|+++.-...+ ....+.+...+...+.|++--||.|-
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~-------~~~~~~l~~~~~~~~~d~e~fI~KAi 170 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKE-------KTDTDLLFEIILANLGSKEFFIRKAI 170 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHH-------ccCHHHHHHHHHHhCCChHHHHHHHH
Confidence 35677778888886666677765333222 12355667777777889999999884
No 202
>KOG4224|consensus
Probab=52.52 E-value=36 Score=30.14 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=40.0
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI 157 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~V 157 (165)
|.++|-+...+.+++.+.+--|-+||+.++-.-. ++++--.-.-+|..++.++||--..
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~pl 308 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPL 308 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhH
Confidence 4566666777888999999899999999985322 2222222344677888888776443
No 203
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=52.48 E-value=1.4e+02 Score=26.06 Aligned_cols=69 Identities=12% Similarity=0.001 Sum_probs=53.3
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
.+...++.++-.+---.+....-.-+-=++.|++.+.+....+....+...+.+.++++|..|-..|++
T Consensus 251 ~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~ 319 (409)
T PF01603_consen 251 SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALY 319 (409)
T ss_dssp GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHG
T ss_pred hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 466667777766666677777777777888999998887666788999999999999999999999976
No 204
>KOG2759|consensus
Probab=51.56 E-value=21 Score=31.64 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=45.4
Q ss_pred CCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576 74 DWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT 150 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l 150 (165)
+|+|..-+..-=..=|..+.+ +++..++..++. |.|+..---|..=+|....--......-.-=.-=+.|.+.+
T Consensus 342 ~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~---s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Ll 418 (442)
T KOG2759|consen 342 EWSPVHKSEKFWRENADRLNENNYELLKILIKLLET---SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLL 418 (442)
T ss_pred CCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc---CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHh
Confidence 577755444333333444442 355555555443 33455544555555554432222110000001123566788
Q ss_pred CCCCHHHHHHHHhcC
Q psy12576 151 QSPDTQIRVAALQCL 165 (165)
Q Consensus 151 ~D~~p~VR~aA~~al 165 (165)
+.++|+||+.|+.|+
T Consensus 419 nh~d~~Vry~ALlav 433 (442)
T KOG2759|consen 419 NHEDPEVRYHALLAV 433 (442)
T ss_pred cCCCchHHHHHHHHH
Confidence 999999999999773
No 205
>KOG1949|consensus
Probab=51.37 E-value=18 Score=34.38 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=54.0
Q ss_pred HcCCcchhhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 91 CCEEDMVPHILPFVNANIE-HADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 91 ~~~~~i~~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
..|..++--+|..|...+. +..-..|-+-+-.+--++.-+... ..+++++|.+-..++|...+||.|+.+
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh---~~le~~Lpal~~~l~D~se~VRvA~vd 324 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSH---PLLEQLLPALRYSLHDNSEKVRVAFVD 324 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccch---hHHHHHHHhcchhhhccchhHHHHHHH
Confidence 4565667777777766554 334578888888888888776653 468999999999999999999999976
No 206
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=51.08 E-value=95 Score=22.68 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=45.2
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc-CCcchhchH-hHHHHHHHHHhhc--------CCCCHHHHHHHHhc
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILV-RPSFIITIS-ERNFIMEVVCEAT--------QSPDTQIRVAALQC 164 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E-G~~~~~~~~-~l~~il~~v~~~l--------~D~~p~VR~aA~~a 164 (165)
..+..++.++.+.|++.+++.+.=++..|-.+++ |...+.+.- ....++..+.+.- .++...||.+|-++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 4577899999999999888887677777777665 554432211 1123333333322 24567999999776
Q ss_pred C
Q psy12576 165 L 165 (165)
Q Consensus 165 l 165 (165)
+
T Consensus 114 ~ 114 (122)
T cd03572 114 I 114 (122)
T ss_pred H
Confidence 3
No 207
>KOG0567|consensus
Probab=50.97 E-value=26 Score=29.34 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=39.1
Q ss_pred HHHcCCcchhhHHHHHhhhc--ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 89 SSCCEEDMVPHILPFVNANI--EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 89 a~~~~~~i~~~vl~~i~~~l--~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
|.++|..-....+|++..-+ .++.+..|+-|--|||+++. .. .+++.-+..+||.+.||...
T Consensus 57 ay~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-~~----------~~~~l~k~~~dp~~~v~ETc 120 (289)
T KOG0567|consen 57 AYVLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-PE----------SLEILTKYIKDPCKEVRETC 120 (289)
T ss_pred hhhhhhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-hh----------hHHHHHHHhcCCccccchHH
Confidence 34444333344445554433 46789999999999999982 11 13343444579999998863
No 208
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=50.33 E-value=1.4e+02 Score=28.21 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHcCCcchhh-HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576 79 KAAGVCLMLLSSCCEEDMVPH-ILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI 157 (165)
Q Consensus 79 ~~a~~~Ld~la~~~~~~i~~~-vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~V 157 (165)
+.+..-|..|+.-.|..--|- ...+|-+.+-=++-..|-||+-||.--+--..+...+.-...+| -+.++|.+-.|
T Consensus 466 ~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~l---kRclnD~DdeV 542 (898)
T COG5240 466 QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENAL---KRCLNDQDDEV 542 (898)
T ss_pred HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHH---HHHhhcccHHH
Confidence 334444555555444322222 33556666666777899999999987777666654433333333 34466999999
Q ss_pred HHHHHhcC
Q psy12576 158 RVAALQCL 165 (165)
Q Consensus 158 R~aA~~al 165 (165)
|.-|-++|
T Consensus 543 RdrAsf~l 550 (898)
T COG5240 543 RDRASFLL 550 (898)
T ss_pred HHHHHHHH
Confidence 99887653
No 209
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=50.27 E-value=1.1e+02 Score=23.38 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
+.+.+.+.+.+.+. +.|. .++|..++-.... ..-++.++..+..++.+++...|+|.-.+|..++..
T Consensus 119 ~~~~~~~~~W~~s~------~~w~-rR~~~v~~~~~~~---~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 PEALELLEKWAKSD------NEWV-RRAAIVMLLRYIR---KEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GGHHHHHHHHHHCS------SHHH-HHHHHHCTTTHGG---GCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCC------cHHH-HHHHHHHHHHHHH---hcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 44556666655532 2566 4566555433222 255788999999999999999999999999988854
No 210
>PHA02641 hypothetical protein; Provisional
Probab=49.99 E-value=11 Score=28.90 Aligned_cols=32 Identities=6% Similarity=-0.199 Sum_probs=25.4
Q ss_pred HHHHHHhhcCCcchh-chHhHHHHHHHHHhhcC
Q psy12576 120 LMSFGAILVRPSFII-TISERNFIMEVVCEATQ 151 (165)
Q Consensus 120 ~~Alg~i~EG~~~~~-~~~~l~~il~~v~~~l~ 151 (165)
+=-||.++|.++... ..+|++.|||.++....
T Consensus 145 IG~~GYvcefwGk~k~i~kYi~~IM~~fls~is 177 (188)
T PHA02641 145 IGFIGYVCSFWGKHNLISEYLHSVMRGFLTHVN 177 (188)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHccc
Confidence 335678889998865 66799999999988765
No 211
>KOG4524|consensus
Probab=49.70 E-value=30 Score=33.73 Aligned_cols=70 Identities=21% Similarity=0.110 Sum_probs=57.6
Q ss_pred chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC--cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRP--SFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~--~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
++.-++......+++++-+.|-.++-.|.....-- .++.+.+..++..|-|++.+.+.+|.+-.-|+.||
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i 871 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCI 871 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHH
Confidence 55667777788999999999999988777666543 34577788999999999999999999999998875
No 212
>KOG2956|consensus
Probab=49.62 E-value=24 Score=31.79 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcC-C---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHH
Q psy12576 80 AAGVCLMLLSSCCE-E---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFI 142 (165)
Q Consensus 80 ~a~~~Ld~la~~~~-~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~i 142 (165)
+.-.++..+-.-+. + .++|-+.|-+-+...|+.-..|++++.+|-++.--.+...+++||.++
T Consensus 425 ~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 425 AVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 34446666666665 3 367888899999999999999999999999888644432344565543
No 213
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=49.54 E-value=60 Score=29.86 Aligned_cols=54 Identities=20% Similarity=0.073 Sum_probs=24.0
Q ss_pred CCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 73 DDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 73 dew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
||-..++.|-..|-.+...-+ ..++-+...+.+.|++++...+.+.=.+|-+++
T Consensus 71 ed~~iR~~aik~lp~~ck~~~-~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 71 EDVQIRKQAIKGLPQLCKDNP-EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHhHH-HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 334444444433333322222 355556665666666666666666655555555
No 214
>KOG2021|consensus
Probab=49.53 E-value=1.5e+02 Score=28.67 Aligned_cols=104 Identities=8% Similarity=0.009 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhcc-----CCC-C-CcCC---CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhh---cccCchHHHHHHH
Q psy12576 54 YLVPILTQKLTKQ-----EEL-D-DEDD---WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNAN---IEHADWRHRDAAL 120 (165)
Q Consensus 54 ~l~p~ll~~l~~~-----~ed-~-ddde---w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~---l~~~dw~~R~Aa~ 120 (165)
.++-.+++-|++. +|+ . ||+| -+.++==-.-+|+++..-|...+..+-.-+..+ -+.+.|..-++|+
T Consensus 382 ~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Ai 461 (980)
T KOG2021|consen 382 KILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAI 461 (980)
T ss_pred HHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 4566666667653 222 1 1222 144555666788888888865555444444443 4457899999999
Q ss_pred HHHHHhhcCCcch--------hch-HhHHHHHHHHHhh--cCCCCHHH
Q psy12576 121 MSFGAILVRPSFI--------ITI-SERNFIMEVVCEA--TQSPDTQI 157 (165)
Q Consensus 121 ~Alg~i~EG~~~~--------~~~-~~l~~il~~v~~~--l~D~~p~V 157 (165)
.-+...+||.... +.+ .-+-.+++.+... +..+|+.|
T Consensus 462 ylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lV 509 (980)
T KOG2021|consen 462 YLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELV 509 (980)
T ss_pred HHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHH
Confidence 9999999987641 111 2344666665554 35777654
No 215
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=48.22 E-value=56 Score=22.05 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=48.2
Q ss_pred HHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 102 PFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 102 ~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
||..=.-.+++-..|+--+-++..+.+.++..+. +==+.++.++-....|++..+-..|++++
T Consensus 21 Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~-SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 21 PFEYIMSNNPSIDVRELILECILQILQSRGENIK-SGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHH-hccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 5544444556778999999999999999887654 34688888888888888888888887764
No 216
>KOG4413|consensus
Probab=47.46 E-value=1.9e+02 Score=25.52 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=58.7
Q ss_pred chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHH
Q psy12576 4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGV 83 (165)
Q Consensus 4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~ 83 (165)
+|.-|...+||...++++.|.. +.|+.| ..++..+-+.+...+.|+ +. ...
T Consensus 226 eDtLVianciElvteLaeteHg-------------------reflaQ--eglIdlicnIIsGadsdP----fe----kfr 276 (524)
T KOG4413|consen 226 EDTLVIANCIELVTELAETEHG-------------------REFLAQ--EGLIDLICNIISGADSDP----FE----KFR 276 (524)
T ss_pred cceeehhhHHHHHHHHHHHhhh-------------------hhhcch--hhHHHHHHHHhhCCCCCc----HH----HHH
Confidence 4455677899999999986532 234433 346666666666544221 21 123
Q ss_pred HHHHHHHHcCC-c--------chhhHHHHHh---hhcccCchHHHHHHHHHHHHhhc
Q psy12576 84 CLMLLSSCCEE-D--------MVPHILPFVN---ANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 84 ~Ld~la~~~~~-~--------i~~~vl~~i~---~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
.|.-....+|+ . +...+.-+|. +.+..+|+...+||+=++|.++.
T Consensus 277 almgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 277 ALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS 333 (524)
T ss_pred HHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence 45566666663 2 2233344443 36667899999999999998873
No 217
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=47.45 E-value=83 Score=23.31 Aligned_cols=66 Identities=8% Similarity=0.036 Sum_probs=47.2
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchH-hHHHHHHHHHhhcC-CCCHHHHHHHHh
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITIS-ERNFIMEVVCEATQ-SPDTQIRVAALQ 163 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~-~l~~il~~v~~~l~-D~~p~VR~aA~~ 163 (165)
..++..+.+.+.+.+++.-.-|+..+-+++.-|+..+... --..++..+.+.+. .++++||.-++.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~ 107 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILE 107 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 4577888899999999999999999999999888732111 12444454444443 788999987654
No 218
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=46.87 E-value=95 Score=27.55 Aligned_cols=79 Identities=15% Similarity=0.045 Sum_probs=56.9
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHH-HHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILP-FVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP 153 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~-~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~ 153 (165)
+..+-+|+.+|..+...+++.-+..++. .+..+|+|+.--.|..|-+.+..-+.-+.........+.+.+.+...|.+|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 3446689999999999999766666664 788999999999999999999988876665322111345555555555544
No 219
>KOG2005|consensus
Probab=46.16 E-value=30 Score=32.77 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=31.9
Q ss_pred chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576 96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
=.++.+..+..++++++-..|-+|++.||..--|...
T Consensus 449 e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~ 485 (878)
T KOG2005|consen 449 ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQR 485 (878)
T ss_pred ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCch
Confidence 3578899999999999999999999999988877654
No 220
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.02 E-value=28 Score=32.50 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=19.2
Q ss_pred HHHhhhcccCchHHHHHHHHHHHHhhcCCc
Q psy12576 102 PFVNANIEHADWRHRDAALMSFGAILVRPS 131 (165)
Q Consensus 102 ~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~ 131 (165)
.+|++.+.+-|.-.|.++++++|..--|-+
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTg 548 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTG 548 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCC
Confidence 456666677777777777777665554444
No 221
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=45.34 E-value=96 Score=22.55 Aligned_cols=67 Identities=7% Similarity=0.071 Sum_probs=47.9
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchH-hHHHHHHHHHhhcCC--CCHHHHHHHHh
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITIS-ERNFIMEVVCEATQS--PDTQIRVAALQ 163 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~-~l~~il~~v~~~l~D--~~p~VR~aA~~ 163 (165)
--.++..+.+.+.+.+++.-.-|+..+.+++.-|+..+... --..++..+...+.+ ++|.||.-++.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~ 104 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILE 104 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 45577889999999999999999999999999888743221 234566666666553 33558877654
No 222
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=45.04 E-value=38 Score=30.45 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=43.0
Q ss_pred cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 110 HADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 110 ~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.+-..|.-++-++|.++-........ -=.++..+...|.++.+.||.+.-+||
T Consensus 385 ~~~~~lR~~aYe~lG~L~~~~p~l~~~--d~~li~~LF~sL~~~~~evr~sIqeAL 438 (501)
T PF13001_consen 385 SEDIELRSLAYETLGLLAKRAPSLFSK--DLSLIEFLFDSLEDESPEVRVSIQEAL 438 (501)
T ss_pred cccHHHHHHHHHHHHHHHccCcccccc--cHHHHHHHHHHhhCcchHHHHHHHHHH
Confidence 467889999999999999887764322 356677788888999999999887664
No 223
>KOG2759|consensus
Probab=44.96 E-value=97 Score=27.63 Aligned_cols=114 Identities=19% Similarity=0.109 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhHhhhhhhh---hhHHhhhcC---CCCCcccHHHHHHHH-------hHHHHHHHHHhhccCCCCCcCCC
Q psy12576 9 ALQGIEFWSNVSDEEVDLAI---EDSEAADFG---RPPTRTSRFYAKGAL-------QYLVPILTQKLTKQEELDDEDDW 75 (165)
Q Consensus 9 a~~aiEfw~tl~e~e~~~~~---~~~~~~~~g---~~~~~~~~~~~~~~~-------~~l~p~ll~~l~~~~ed~dddew 75 (165)
-.+.|+|..+--+++..-.. .+..=+..| -+|.+++..|-+... -.|+.+|+.+|...+| -
T Consensus 308 L~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D------p 381 (442)
T KOG2759|consen 308 LVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND------P 381 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC------C
Confidence 45678888777765432221 122234456 366666555533322 2478888888887551 2
Q ss_pred chhhHHHHHHHHHHHHcCC--cchhh--HHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 76 NPCKAAGVCLMLLSSCCEE--DMVPH--ILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~--~i~~~--vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
..--.|..=+.....++|. .++.. .-..|-+.+.++|+..|+-|++|...++-
T Consensus 382 ~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 382 IILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred ceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 2223444556667778883 44443 33566778899999999999999887653
No 224
>KOG1525|consensus
Probab=44.76 E-value=2e+02 Score=29.27 Aligned_cols=67 Identities=7% Similarity=0.116 Sum_probs=54.7
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
+-.|+|++..-+.+++=.+|.-|+--+|-+.--.+.... ..-+.+....+.++.|-++.||.++.++
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~ 323 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVES 323 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHH
Confidence 345779999999999999999999999999876655433 3466777888999999999999988764
No 225
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=44.28 E-value=1.1e+02 Score=26.09 Aligned_cols=85 Identities=11% Similarity=0.155 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHcCC--cc--------hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch-hchHhH--HHHHHH
Q psy12576 79 KAAGVCLMLLSSCCEE--DM--------VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI-ITISER--NFIMEV 145 (165)
Q Consensus 79 ~~a~~~Ld~la~~~~~--~i--------~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l--~~il~~ 145 (165)
..|+-+..++-..+.. .+ +..++......+.|++.--|+=++--||-++....-. ++..|+ +.-+..
T Consensus 179 diasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl 258 (335)
T PF08569_consen 179 DIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKL 258 (335)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHH
T ss_pred HhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHH
Confidence 4555666666554442 22 2346667778899999999999999999999776652 333444 667888
Q ss_pred HHhhcCCCCHHHHHHHHh
Q psy12576 146 VCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 146 v~~~l~D~~p~VR~aA~~ 163 (165)
+...|+|+...||.-|++
T Consensus 259 ~M~lL~d~sk~Iq~eAFh 276 (335)
T PF08569_consen 259 MMNLLRDKSKNIQFEAFH 276 (335)
T ss_dssp HHHHTT-S-HHHHHHHHH
T ss_pred HHHHhcCcchhhhHHHHH
Confidence 899999999999999876
No 226
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=44.08 E-value=26 Score=26.56 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=22.7
Q ss_pred hhhHHHHHhhhccc-CchHHHHHHHHHHHHhh
Q psy12576 97 VPHILPFVNANIEH-ADWRHRDAALMSFGAIL 127 (165)
Q Consensus 97 ~~~vl~~i~~~l~~-~dw~~R~Aa~~Alg~i~ 127 (165)
.|.+|+.+-..+.+ .+|..|+.++-.+|.|+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG 39 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILG 39 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 45556555555543 35999999999999886
No 227
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=43.88 E-value=1e+02 Score=22.93 Aligned_cols=66 Identities=6% Similarity=0.059 Sum_probs=45.7
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchH-hHHHHHHHHHhhcC------CCCHHHHHHHHh
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITIS-ERNFIMEVVCEATQ------SPDTQIRVAALQ 163 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~-~l~~il~~v~~~l~------D~~p~VR~aA~~ 163 (165)
-..+..+...+++.+++.-.=|+..|-+++.-|+..+... --..++.-+++.+. .+++.||.-.+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~ 109 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIE 109 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHH
Confidence 3577888999999999888888888899999888743211 12444444555543 367889876554
No 228
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=43.10 E-value=56 Score=25.52 Aligned_cols=40 Identities=25% Similarity=0.418 Sum_probs=27.5
Q ss_pred cHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHH
Q psy12576 44 SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVC 84 (165)
Q Consensus 44 ~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~ 84 (165)
-..|+.+.+..|+|.+.+.|....+ +|.++|...--++.|
T Consensus 74 ~~efl~~~~~~L~~~~~~~L~~p~~-~d~~~W~LAl~~a~~ 113 (174)
T PF04510_consen 74 YGEFLIPFMENLLPEISKVLLPPEE-VDVEDWVLALTGAVC 113 (174)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCchh-ccHHHHHHHHHHHHH
Confidence 3457888888899999999886544 444569775544433
No 229
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=42.21 E-value=2.2e+02 Score=30.13 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=44.3
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT 150 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l 150 (165)
.+++.++..+...+..++=..=+.|+-||-.+....+.++...+=+.|+..+.+.+
T Consensus 1456 ~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1456 PLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 36777777778888888777778999999999988888777777788888777665
No 230
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=41.70 E-value=1.3e+02 Score=22.54 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=35.9
Q ss_pred CchhhHHHHHHHHHHHHcCC-----cchhhHHHHHhhhcc-cCchH-HHHHHHHHH
Q psy12576 75 WNPCKAAGVCLMLLSSCCEE-----DMVPHILPFVNANIE-HADWR-HRDAALMSF 123 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~-----~i~~~vl~~i~~~l~-~~dw~-~R~Aa~~Al 123 (165)
|.....-..+|..|+.++.+ .|....++++++.+. +++-. .|-.|.++|
T Consensus 99 ~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 99 SKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp TS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 55566777789999999886 378899999999884 56555 676666665
No 231
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=41.48 E-value=2.3e+02 Score=24.32 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=28.9
Q ss_pred CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
|......-.+++..+.++-..+++++|.||.+|+.|
T Consensus 262 ~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~a 297 (372)
T PF12231_consen 262 GSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKA 297 (372)
T ss_pred CCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 444233445899999999999999999999999865
No 232
>KOG2149|consensus
Probab=40.48 E-value=2.6e+02 Score=24.68 Aligned_cols=75 Identities=21% Similarity=0.162 Sum_probs=57.5
Q ss_pred CCCchhhHHHHHHHHHHHHcC-Cc---chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHh
Q psy12576 73 DDWNPCKAAGVCLMLLSSCCE-ED---MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCE 148 (165)
Q Consensus 73 dew~~~~~a~~~Ld~la~~~~-~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~ 148 (165)
++..++.++-+.++.+..+.. .. .++.+++++...+.+--+..|.-++.-|..+++.|.+...- +.-.+++....
T Consensus 111 ~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~-~~~~il~n~~d 189 (393)
T KOG2149|consen 111 DDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR-YASKILENFKD 189 (393)
T ss_pred ccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH-HHHHHHHHHHH
Confidence 457899999999999877766 33 45668899999999999999999999999999999874332 23335554333
No 233
>KOG2022|consensus
Probab=40.14 E-value=1.5e+02 Score=29.03 Aligned_cols=84 Identities=8% Similarity=0.030 Sum_probs=63.0
Q ss_pred CCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhh-hcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHh
Q psy12576 73 DDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNA-NIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCE 148 (165)
Q Consensus 73 dew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~-~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~ 148 (165)
+.|+...+---++..++..+|+ ..+|.++..... .++..+++.-..+.-.+|+.++--++.- .+++..+|.+.+
T Consensus 479 ~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~sl~~L~~ 556 (982)
T KOG2022|consen 479 DSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNPSLPLLFQ 556 (982)
T ss_pred hHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCchHHHHHH
Confidence 4699888888899999999995 356666665433 3344578888999999999998776642 368999999999
Q ss_pred hcCCCCHHHH
Q psy12576 149 ATQSPDTQIR 158 (165)
Q Consensus 149 ~l~D~~p~VR 158 (165)
++..+...++
T Consensus 557 ~Lh~sk~s~q 566 (982)
T KOG2022|consen 557 GLHNSKESEQ 566 (982)
T ss_pred HhcCchHHHH
Confidence 9976655443
No 234
>KOG0889|consensus
Probab=40.04 E-value=38 Score=37.47 Aligned_cols=90 Identities=10% Similarity=0.090 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHH----HHHcCCc-------chhhHHHHHhhhcccCchHHHHHHHHH
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLL----SSCCEED-------MVPHILPFVNANIEHADWRHRDAALMS 122 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~l----a~~~~~~-------i~~~vl~~i~~~l~~~dw~~R~Aa~~A 122 (165)
.+++.|.+.|...+ -..+.++-.||..+ ...+|+. +++.+++-+-..-.++.|+.|.+++++
T Consensus 984 i~ldal~~~l~~~~-------~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~g 1056 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN-------SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNG 1056 (3550)
T ss_pred HHHHHHHHHHhccc-------hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCce
Confidence 45677777777322 34556666777666 5566642 344555555556678999999999999
Q ss_pred HHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576 123 FGAILVRPSFIITISERNFIMEVVCEAT 150 (165)
Q Consensus 123 lg~i~EG~~~~~~~~~l~~il~~v~~~l 150 (165)
++++.+-.....+......++..+...|
T Consensus 1057 I~~l~~~~~~~~l~d~~~d~~~~l~fvl 1084 (3550)
T KOG0889|consen 1057 IKCLIESMPSLWLLDFQVDILKALFFVL 1084 (3550)
T ss_pred eeeehhhchHHHHHHHHHHHhhhHHHhh
Confidence 9999987665333333444444433333
No 235
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=39.36 E-value=1.7e+02 Score=25.93 Aligned_cols=84 Identities=11% Similarity=0.012 Sum_probs=54.9
Q ss_pred hHHHHHHHHHH-HHcCCcchhhHHHHH--hhhcccCchHHHHHHHHHHHHhhcCCcchh---chHhHHHHHHHHHhhcCC
Q psy12576 79 KAAGVCLMLLS-SCCEEDMVPHILPFV--NANIEHADWRHRDAALMSFGAILVRPSFII---TISERNFIMEVVCEATQS 152 (165)
Q Consensus 79 ~~a~~~Ld~la-~~~~~~i~~~vl~~i--~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~---~~~~l~~il~~v~~~l~D 152 (165)
+.+-.++..|. .+.|...+..+..++ ...-...+.+.-++|+..|+-++-|.++.. ..-....+++.+...++.
T Consensus 233 ~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~ 312 (464)
T PF11864_consen 233 KPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS 312 (464)
T ss_pred hhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence 34444555554 455656677777777 333335667777899999999998884421 111233489999999998
Q ss_pred CCHHHHHHHH
Q psy12576 153 PDTQIRVAAL 162 (165)
Q Consensus 153 ~~p~VR~aA~ 162 (165)
++++|=+.-+
T Consensus 313 ~~~~v~~eIl 322 (464)
T PF11864_consen 313 NSPRVDYEIL 322 (464)
T ss_pred CCCeehHHHH
Confidence 8888765443
No 236
>KOG2199|consensus
Probab=39.01 E-value=90 Score=27.72 Aligned_cols=67 Identities=10% Similarity=-0.004 Sum_probs=47.2
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchH-hHHHHHHHHHhhcC-CCCHHHHHHH
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITIS-ERNFIMEVVCEATQ-SPDTQIRVAA 161 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~-~l~~il~~v~~~l~-D~~p~VR~aA 161 (165)
..-...+.+|.+++.+.|++.--=|+.-++++.+-|++.++.. --..+-..+...+. ..||+|+..-
T Consensus 41 ~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~ 109 (462)
T KOG2199|consen 41 DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKM 109 (462)
T ss_pred cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHH
Confidence 3456688899999999999999999999999999999843221 11223333333344 7888888653
No 237
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=38.28 E-value=1.4e+02 Score=29.16 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=68.8
Q ss_pred HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-C----cchhhHHHHHhhhccc--CchHHHH---HHH
Q psy12576 51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-E----DMVPHILPFVNANIEH--ADWRHRD---AAL 120 (165)
Q Consensus 51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~----~i~~~vl~~i~~~l~~--~dw~~R~---Aa~ 120 (165)
.||.|+|-|+..+...| .+- --+.-+++-.-++++....- + .+.|.+.+++.+.+-+ +.|..+. +.+
T Consensus 120 eWpTL~~DL~~~Ls~~D--~~t-n~~~L~~~h~Ifk~~r~l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~l 196 (947)
T COG5657 120 EWPTLVPDLLSLLSEKD--MVT-NENSLRVLHHIFKRLRRLFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESL 196 (947)
T ss_pred cchhHHHHHHhhhcccc--hHH-HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhH
Confidence 57889999888888521 111 12444556666777774443 3 3667777777775533 5677765 555
Q ss_pred HHHHHh---------hcCCcc--hhchHhHHHHHHHHHhhcCCCCHHHHH
Q psy12576 121 MSFGAI---------LVRPSF--IITISERNFIMEVVCEATQSPDTQIRV 159 (165)
Q Consensus 121 ~Alg~i---------~EG~~~--~~~~~~l~~il~~v~~~l~D~~p~VR~ 159 (165)
+.+=.+ -.||.+ ...+.+++..|...++.+.-.+|..|.
T Consensus 197 lslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~~~~~lq~ 246 (947)
T COG5657 197 LSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYSNPVLQK 246 (947)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 554444 367765 356678888999999998877777766
No 238
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=37.88 E-value=56 Score=24.47 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=36.6
Q ss_pred CchHHHHHHHHHHHHhhc---CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 111 ADWRHRDAALMSFGAILV---RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 111 ~dw~~R~Aa~~Alg~i~E---G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.+-..-...+.+|-+|+. |.... . .-+..+..++..+..+++++|..|++-
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v-~--~~~~~v~~i~~~L~s~~~~~r~~~lei 181 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAV-L--SHPDSVNLIALSLDSPNIKTRKLALEI 181 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHH-H--CSSSHHHHHHHT--TTSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHH-H--cCcHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 445566788999999986 33322 2 257778999999999999999999764
No 239
>PF09155 DUF1940: Domain of unknown function (DUF1940); InterPro: IPR015238 This family adopts a secondary structure consisting of six alpha helices, with four long helices (alpha1, alpha2, alpha5, alpha6) forming a left-handed, antiparallel alpha helical bundle. The function of this family of archaeal hypothetical proteins has not, as yet, been defined []. ; PDB: 1NIG_A.
Probab=37.51 E-value=64 Score=23.80 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHHHHHHH-HhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHH
Q psy12576 117 DAALMSFG-AILVRPSFIITISERNFIMEVVCEATQSPDTQIR 158 (165)
Q Consensus 117 ~Aa~~Alg-~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR 158 (165)
+++.--+| +++||...... .++=.|+..+.+.|-||+.+..
T Consensus 23 e~a~AflGLAvSEG~KV~E~-rE~lDilDtv~n~LyD~e~~Ln 64 (143)
T PF09155_consen 23 ELAEAFLGLAVSEGSKVPET-RECLDILDTVYNSLYDKESKLN 64 (143)
T ss_dssp HHHHHHHHHHHHT-SSHHHH-HHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHhHHhhccCCchhH-HHHHHHHHHHHHhccCchhHHh
Confidence 45555555 78899986433 3677889999999999986543
No 240
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=37.22 E-value=85 Score=21.35 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC-CHHHHHHHHhcC
Q psy12576 115 HRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP-DTQIRVAALQCL 165 (165)
Q Consensus 115 ~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~-~p~VR~aA~~al 165 (165)
.|..|.++-.++ ...-+.-+.|.+.-..++. ++.||.+|.+++
T Consensus 2 er~~a~l~~ls~--------~~~~~~~i~pli~~~~~k~~~~~vr~ha~qal 45 (109)
T PF09685_consen 2 ERTWAALAYLSF--------FSPFLGFIGPLIVWIVKKDKSPFVRFHAKQAL 45 (109)
T ss_pred cHHHHHHHHHHH--------HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 355555555441 1234677778777777644 599999998864
No 241
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=37.20 E-value=2.8e+02 Score=24.03 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=53.1
Q ss_pred HHHHHHhHHHHHHHHHhhccC---CCCCcCC----CchhhHHHHHHHHHHHHcCCc---chhhHHHHHhhhccc--CchH
Q psy12576 47 YAKGALQYLVPILTQKLTKQE---ELDDEDD----WNPCKAAGVCLMLLSSCCEED---MVPHILPFVNANIEH--ADWR 114 (165)
Q Consensus 47 ~~~~~~~~l~p~ll~~l~~~~---ed~ddde----w~~~~~a~~~Ld~la~~~~~~---i~~~vl~~i~~~l~~--~dw~ 114 (165)
|....+...+..+...|.... +++|+|+ |........++.+.+.-+++. .+|..+.-+.+.+.+ ...+
T Consensus 75 ~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~ 154 (370)
T PF08506_consen 75 FFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPK 154 (370)
T ss_dssp HHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 455555556666666666431 1222232 455666788888888888853 333333333333322 2222
Q ss_pred HH---HHHHHHHHHhhcCCcch---hchHhHHHHHH-HHHhhc
Q psy12576 115 HR---DAALMSFGAILVRPSFI---ITISERNFIME-VVCEAT 150 (165)
Q Consensus 115 ~R---~Aa~~Alg~i~EG~~~~---~~~~~l~~il~-~v~~~l 150 (165)
+. ..|+--|++++++..-. ..++++++|+. +|++.+
T Consensus 155 ~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl 197 (370)
T PF08506_consen 155 YDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNL 197 (370)
T ss_dssp GHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHH
T ss_pred ccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCcc
Confidence 22 45666677888876532 23456777766 334443
No 242
>KOG4535|consensus
Probab=36.83 E-value=12 Score=34.18 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=42.5
Q ss_pred hhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHH---------HHHhhcCCCCHHHHHHHHhc
Q psy12576 106 ANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIME---------VVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 106 ~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~---------~v~~~l~D~~p~VR~aA~~a 164 (165)
+...+.+-+.|..|+..|.+.........++.|-..++| .+.-+|+||+|+-|..|++.
T Consensus 3 ~~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv 70 (728)
T KOG4535|consen 3 SKMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQV 70 (728)
T ss_pred cchhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHH
Confidence 456677889999999999988766655555555444443 12345789999999999874
No 243
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=36.44 E-value=2.5e+02 Score=27.24 Aligned_cols=109 Identities=14% Similarity=-0.005 Sum_probs=64.4
Q ss_pred HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC--C--c----chh-hHHHHHhhhcccCchHHHHHHHH
Q psy12576 51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE--E--D----MVP-HILPFVNANIEHADWRHRDAALM 121 (165)
Q Consensus 51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~--~--~----i~~-~vl~~i~~~l~~~dw~~R~Aa~~ 121 (165)
.+..+++.++..+......+-+ .-| .+.+..||-.+|.... . . ++. .+++++.+.++++---.|-=|+-
T Consensus 405 TfqgiLsf~~sil~qsaa~psn-~dn-arq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace 482 (970)
T COG5656 405 TFQGILSFLLSILGQSAATPSN-IDN-ARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE 482 (970)
T ss_pred hhhhHHHHHHHHHhcccCCCCc-ccc-HHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Confidence 4667888888988754433221 123 3455566766665443 1 1 111 13344444555555444544555
Q ss_pred HHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 122 SFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 122 Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.++-+.|.-+++ ..+-++.+.+.+.+++++--||--|.-|
T Consensus 483 ~is~~eeDfkd~---~ill~aye~t~ncl~nn~lpv~ieAalA 522 (970)
T COG5656 483 FISTIEEDFKDN---GILLEAYENTHNCLKNNHLPVMIEAALA 522 (970)
T ss_pred HHHHHHHhcccc---hHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 566665555543 3567788888899999998888777554
No 244
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=35.59 E-value=3.3e+02 Score=24.44 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=54.9
Q ss_pred CCchhhHHHHHHHHHHHHcCCcchh--hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc--hHhHHHHHH-HHHh
Q psy12576 74 DWNPCKAAGVCLMLLSSCCEEDMVP--HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT--ISERNFIME-VVCE 148 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~~~~i~~--~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~--~~~l~~il~-~v~~ 148 (165)
+-..+..+.+||..|+...|.-+.. .++.|+=..+.++....|-+--=||++++.-...... .......+. .+..
T Consensus 387 ~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~ 466 (501)
T PF13001_consen 387 DIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLS 466 (501)
T ss_pred cHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 3466778999999999999864422 2445555556778888887766677766643332111 011222222 3334
Q ss_pred hcCCCCHHHHHHHHh
Q psy12576 149 ATQSPDTQIRVAALQ 163 (165)
Q Consensus 149 ~l~D~~p~VR~aA~~ 163 (165)
...+....+|++|..
T Consensus 467 ~~~~~~~~~R~~avk 481 (501)
T PF13001_consen 467 YIQSEVRSCRYAAVK 481 (501)
T ss_pred hccchhHHHHHHHHH
Confidence 455888889999863
No 245
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=35.55 E-value=48 Score=24.28 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=45.7
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchH-hHHHHHHHHHhhcC--CCCH--HHHHHHHh
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITIS-ERNFIMEVVCEATQ--SPDT--QIRVAALQ 163 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~-~l~~il~~v~~~l~--D~~p--~VR~aA~~ 163 (165)
-..++..+.+.|.+.+++...-|+..+-+++.-|+..+... --..++..+.+.+. ..++ .||.-++.
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ 111 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILE 111 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHH
Confidence 45677889999999999999999999999999887643221 12345555555443 2222 28877654
No 246
>KOG2973|consensus
Probab=35.48 E-value=1.9e+02 Score=25.01 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC--CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE--EDMVPHILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~--~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
..+++.+.+++...+ +..-|+++|-.+|+..+ +.++..++.++-..+.++.|..-+..+|.+.+++-
T Consensus 43 ~~~lk~l~qL~~~~~---------~~~~a~~alVnlsq~~~l~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 43 EALLKDLTQLLKDLD---------PAEPAATALVNLSQKEELRKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred hhhHHHHHHHccCcc---------cccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 457888888888543 14556778888888877 56777778888889999999999999999998874
No 247
>KOG0803|consensus
Probab=35.13 E-value=1.6e+02 Score=30.00 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-Cc---chhhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-ED---MVPHILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
..=+-.+++.+.+.| +-|.. =|.++|..+-.... +. |+|.....+.+.+.+++.+.|.+..-++....-
T Consensus 40 dsel~~I~kkL~KkD------~~TK~-KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t 112 (1312)
T KOG0803|consen 40 DSELDIIVKKLLKRD------ETTKI-KALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLT 112 (1312)
T ss_pred CHHHHHHHHHHhccC------hHHHH-HHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 334666777777765 23332 23444444422222 11 445555556778889999999999999999999
Q ss_pred CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
++.+. +.+++..++|...-+.-|..-.|-.+|..
T Consensus 113 ~lkk~-lsp~LK~li~~wl~~~~d~~~~vs~aa~~ 146 (1312)
T KOG0803|consen 113 KLKKK-LSPFLKSLIPPWLGGQFDLDYPVSEAAKA 146 (1312)
T ss_pred HHHHH-hhHHHHhhhhhhhheecccchHHHHHHHH
Confidence 99885 45699999999999999999999988865
No 248
>KOG1822|consensus
Probab=34.24 E-value=1e+02 Score=32.60 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHcCCcc---hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc-hhchHhHHHHHHHHHhhcCCC
Q psy12576 78 CKAAGVCLMLLSSCCEEDM---VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF-IITISERNFIMEVVCEATQSP 153 (165)
Q Consensus 78 ~~~a~~~Ld~la~~~~~~i---~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~-~~~~~~l~~il~~v~~~l~D~ 153 (165)
-.+|..||..+=.++|..+ +...+.++.+.....+-..|.-....+=...+|++. .-...+...++-..-..+.|.
T Consensus 110 k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~ 189 (2067)
T KOG1822|consen 110 KLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDR 189 (2067)
T ss_pred HHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhh
Confidence 4567788988888888533 567778888888877777777777777777777773 123345777888888889999
Q ss_pred CHHHHHHHHhcC
Q psy12576 154 DTQIRVAALQCL 165 (165)
Q Consensus 154 ~p~VR~aA~~al 165 (165)
.-.||-||..|+
T Consensus 190 s~~v~iaa~rc~ 201 (2067)
T KOG1822|consen 190 SFNVKIAAARCL 201 (2067)
T ss_pred hHHHHHHhHHHH
Confidence 999999998874
No 249
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=34.05 E-value=2.8e+02 Score=23.26 Aligned_cols=103 Identities=11% Similarity=-0.000 Sum_probs=61.6
Q ss_pred HHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHc-------CCcchhhHHHHHhhhcccCchHHHHHHH
Q psy12576 48 AKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCC-------EEDMVPHILPFVNANIEHADWRHRDAAL 120 (165)
Q Consensus 48 ~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~-------~~~i~~~vl~~i~~~l~~~dw~~R~Aa~ 120 (165)
+...+..++...+.++.+..++ --..+..=-.-|..+.+.+ |...+..++..+.-.+.|++-..-+.|+
T Consensus 111 v~~I~~~vf~~Tl~MI~~d~~~----yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L 186 (319)
T PF08767_consen 111 VPQILEAVFECTLPMINKDFEE----YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGL 186 (319)
T ss_dssp HHHHHHHHHHHHHHHHSSTSSS----SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhh----ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4444455666666666532211 0122333333444554443 3345666778888899999999999999
Q ss_pred HHHHHhhcCCcc-------hhchHhHHHHHHHHHhhcCCCC
Q psy12576 121 MSFGAILVRPSF-------IITISERNFIMEVVCEATQSPD 154 (165)
Q Consensus 121 ~Alg~i~EG~~~-------~~~~~~l~~il~~v~~~l~D~~ 154 (165)
-++..+++-+.. ...+.+.-.++..+..-+.|+.
T Consensus 187 ~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 187 NILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 999988876665 2233444556666666666654
No 250
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=34.01 E-value=93 Score=24.13 Aligned_cols=76 Identities=14% Similarity=0.051 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
|..+|.+|..+ .|+........+..|..--+ --....+.++...+.+ ...|.-|+-.|.. .++
T Consensus 44 p~aL~~~L~sv----------~w~~~~~~~~~~~ll~~W~~-~~p~~AL~LL~~~f~~--~~VR~yAv~~L~~----~~d 106 (184)
T PF00613_consen 44 PEALPKLLRSV----------DWWNPEEVSEAYQLLLQWPP-ISPEDALELLSPNFPD--PFVRQYAVRRLES----LSD 106 (184)
T ss_dssp GGGHHHHHTTS----------TTTSHHHHHHHHHHHHTSHC-TTHHHHHHCTSTT-----HHHHHHHHHHHCT----S-H
T ss_pred chHHHHHHhhC----------CCCchhhHHHHHHHHHcCCC-CCHHHHHHHHHhhccH--HHHHHHHHHHHHH----cCc
Confidence 55666555522 26555555666776655333 1133467777777766 6788888877744 334
Q ss_pred hhchHhHHHHHHH
Q psy12576 133 IITISERNFIMEV 145 (165)
Q Consensus 133 ~~~~~~l~~il~~ 145 (165)
..+..+++++++.
T Consensus 107 ~~l~~yLpQLVQa 119 (184)
T PF00613_consen 107 EELLFYLPQLVQA 119 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333355555554
No 251
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=33.67 E-value=1.8e+02 Score=27.28 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHh-HHHHHHHHHhhcC-CCCHHHH
Q psy12576 81 AGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISE-RNFIMEVVCEATQ-SPDTQIR 158 (165)
Q Consensus 81 a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~-l~~il~~v~~~l~-D~~p~VR 158 (165)
+..+++.|.. +.+.---.++..+..++..+ .+|..++.-||.+.-.-... +... -..+++-+++.|+ |.++.|-
T Consensus 53 s~~~~~il~~-~~~P~~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~-l~~i~~t~Lf~~LLk~L~~D~~~~~~ 128 (668)
T PF04388_consen 53 SQRALEILVG-VQEPHDKHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPW-LYKILQTPLFKSLLKCLQFDTSITVV 128 (668)
T ss_pred cHHHHHHHHh-cCCccHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCch-HHHHhcChhHHHHHHHHhhcccHHHH
Confidence 3444554442 22222235777788888866 59999999999998743332 1111 2356777777776 9999999
Q ss_pred HHHHhcC
Q psy12576 159 VAALQCL 165 (165)
Q Consensus 159 ~aA~~al 165 (165)
.+|+-||
T Consensus 129 ~~al~~L 135 (668)
T PF04388_consen 129 SSALLVL 135 (668)
T ss_pred HHHHHHH
Confidence 9998764
No 252
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=32.24 E-value=2.1e+02 Score=23.24 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=44.4
Q ss_pred HHHHHHHHcCC-cchhhHHHHHhhhcccCc-hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 84 CLMLLSSCCEE-DMVPHILPFVNANIEHAD-WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 84 ~Ld~la~~~~~-~i~~~vl~~i~~~l~~~d-w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
..|.++.++.. ...|.+++....-.++.+ |-.|-+.+++++-.=++. ....+++.+=..+.|.++.||.|-
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~-------~~~~if~i~E~~l~d~e~fV~KAi 174 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTL-------DLLEIFEIIELLLGDKEFFVQKAI 174 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCcc-------chhHHHHHHHHHccChHHHHHHHH
Confidence 36777777664 455566655534444444 666656666666544433 233678877777889999999875
Q ss_pred H
Q psy12576 162 L 162 (165)
Q Consensus 162 ~ 162 (165)
-
T Consensus 175 g 175 (222)
T COG4912 175 G 175 (222)
T ss_pred H
Confidence 3
No 253
>KOG2005|consensus
Probab=32.24 E-value=22 Score=33.63 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=52.8
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
+...|..+.+++.+.+...+-.|++++|.+.-|... +.+.++-.+-..++.++..+|.+|+.
T Consensus 413 vd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~n-----e~dpalALLsdyv~~~~s~~ri~aIl 474 (878)
T KOG2005|consen 413 VDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFN-----ECDPALALLSDYLQSSSSIHRIGAIL 474 (878)
T ss_pred chhhHHHHHHHhhcCCchhhhccceeeeeecccccc-----ccCHHHHHHHHhccCCCceeehHHhh
Confidence 566888999999999988888999999988877754 57888888888999999999988864
No 254
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=32.12 E-value=57 Score=30.01 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=33.2
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
.+.|.+......-+.+.+|-.++-|+-|||..+||++.
T Consensus 519 ~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 519 PVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTSH 556 (559)
T ss_pred hhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCCc
Confidence 46777777777789999999999999999999999875
No 255
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=31.96 E-value=1.2e+02 Score=21.01 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=44.7
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
-+.+...+.+.+....+.+|-.++.-+-+|+--+...........+.+.++......++.+|..-
T Consensus 35 a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl 99 (114)
T cd03562 35 AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKL 99 (114)
T ss_pred HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34555666667777777889999999999987666543332334447777777778888888654
No 256
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=31.47 E-value=2.4e+02 Score=21.56 Aligned_cols=78 Identities=8% Similarity=0.031 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
|..+|.++..+. |+.......++..|..=-+ --....|.++..++. +...|.-|+-.|.... +
T Consensus 45 p~aL~~~L~sv~----------W~~~~e~~e~~~lL~~W~~-i~~~~aLeLL~~~f~--~~~VR~yAV~~L~~~s----d 107 (166)
T cd00870 45 KKALTKFLKSVN----------WSDEQEVKQALELMPKWAK-IDIEDALELLSPYFT--NPVVRKYAVSRLKLAS----D 107 (166)
T ss_pred cHHHHHHhhhCC----------CCCHHHHHHHHHHHhcCCC-CCHHHHHHHcCccCC--CHHHHHHHHHHHHhCC----H
Confidence 566666665432 6544444455555544322 124456777777775 4668988888887643 4
Q ss_pred hhchHhHHHHHHHHH
Q psy12576 133 IITISERNFIMEVVC 147 (165)
Q Consensus 133 ~~~~~~l~~il~~v~ 147 (165)
..+..+++++++.+-
T Consensus 108 ~eL~~yL~QLVQaLK 122 (166)
T cd00870 108 EELLLYLLQLVQALK 122 (166)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556777766543
No 257
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=30.93 E-value=1e+02 Score=17.15 Aligned_cols=34 Identities=9% Similarity=0.234 Sum_probs=22.4
Q ss_pred HHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHH
Q psy12576 118 AALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIR 158 (165)
Q Consensus 118 Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR 158 (165)
+|+++||-+.=|-.. +.++..+.+.+.|.+-.+|
T Consensus 1 gA~lgLGl~~aGs~~-------~~~~~~L~~~l~~~~~~~~ 34 (35)
T PF01851_consen 1 GAILGLGLIYAGSGN-------EEVLDLLRPYLSDTSNEMI 34 (35)
T ss_dssp HHHHHHHHHTTTT---------HHHHHHHHHHHCTSSHHHH
T ss_pred CcHHHHHHHHcCCCC-------HHHHHHHHHHHHhcccccc
Confidence 588999999877543 3456666666776665554
No 258
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=30.92 E-value=2.5e+02 Score=21.56 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHcC-Ccchhh-HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576 79 KAAGVCLMLLSSCCE-EDMVPH-ILPFVNANIEHADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 79 ~~a~~~Ld~la~~~~-~~i~~~-vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
..+..+++.+...+. +-+-|. .+|.+-....|++...|.-|.-.+..+.|-=..
T Consensus 23 ~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 23 SVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 444555777777666 444443 668888888899999999998888877654333
No 259
>KOG0891|consensus
Probab=30.05 E-value=1.7e+02 Score=31.71 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=61.1
Q ss_pred CchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
++...-+..++..++.-.+- +.+..-...+.+.+.+-.=..|.+|++-.+..+.-+.. ....+.+.+...+...+.
T Consensus 107 ~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~-~~~~~~~~~~~~i~~~~~ 185 (2341)
T KOG0891|consen 107 VEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPT-FFYPYVNKFFKNIFAALR 185 (2341)
T ss_pred hHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcH-HHHHHHHHHHHHHHHhcc
Confidence 55555556666665544441 22332222233333444445678999999988887766 455689999999999999
Q ss_pred CCCHHHHHHHHhcC
Q psy12576 152 SPDTQIRVAALQCL 165 (165)
Q Consensus 152 D~~p~VR~aA~~al 165 (165)
||+|.+|-.|+.+|
T Consensus 186 ~~~~~i~~~a~~al 199 (2341)
T KOG0891|consen 186 DPKPAIRLQACSAL 199 (2341)
T ss_pred CCChhhhHHHHHHH
Confidence 99999999998774
No 260
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=30.01 E-value=1.5e+02 Score=26.41 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=39.9
Q ss_pred HHHHHhhhcccCchHHHHHHHHHHHHhhc-CCcchhchHhHHHHHHHHHhhcCCCC-HHHHHHHHhc
Q psy12576 100 ILPFVNANIEHADWRHRDAALMSFGAILV-RPSFIITISERNFIMEVVCEATQSPD-TQIRVAALQC 164 (165)
Q Consensus 100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E-G~~~~~~~~~l~~il~~v~~~l~D~~-p~VR~aA~~a 164 (165)
..||+. .+.++||.....|...++-++. |... .....++.+++.+++.+..++ ...+..|.+|
T Consensus 103 ~~~fl~-lL~~~d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~ 167 (429)
T cd00256 103 WEPFFN-LLNRQDQFIVHMSFSILAKLACFGLAK-MEGSDLDYYFNWLKEQLNNITNNDYVQTAARC 167 (429)
T ss_pred hHHHHH-HHcCCchhHHHHHHHHHHHHHhcCccc-cchhHHHHHHHHHHHHhhccCCcchHHHHHHH
Confidence 345555 6678899888777777776654 4432 333457778888888887543 5555555454
No 261
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=29.66 E-value=2.4e+02 Score=20.96 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
+.+-..++.+|+..+ -...+.|..||-. +.+..+.+--..+.+-+.+..+|.- +..|. +.++-+
T Consensus 16 ~~l~~~~~~LL~~~d-------~~vQklAL~cll~----~k~~~l~pY~d~L~~Lldd~~frde---L~~f~-~~~~~~- 79 (141)
T PF07539_consen 16 DELYDALLRLLSSRD-------PEVQKLALDCLLT----WKDPYLTPYKDNLENLLDDKTFRDE---LTTFN-LSDESS- 79 (141)
T ss_pred HHHHHHHHHHHcCCC-------HHHHHHHHHHHHH----hCcHHHHhHHHHHHHHcCcchHHHH---HHhhc-ccCCcC-
Confidence 355666677777543 5778888888753 4432222223444445544443332 33333 222222
Q ss_pred hhchHhHHHHHHHHHhhc
Q psy12576 133 IITISERNFIMEVVCEAT 150 (165)
Q Consensus 133 ~~~~~~l~~il~~v~~~l 150 (165)
.+...+++.+||.|++-|
T Consensus 80 ~I~~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 80 VIEEEHRPELMPVVLRIL 97 (141)
T ss_pred CCCHHHHhHHHHHHHHHH
Confidence 245568999999988765
No 262
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=29.24 E-value=3.8e+02 Score=23.28 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHcC-CcchhhHHHHHhhhccc--CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576 78 CKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEH--ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT 150 (165)
Q Consensus 78 ~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~--~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l 150 (165)
+.||..|| -.--| .+++|.++.|+.+.+.. .+-..--.-++-..+++....- +..+|++++||.|+..+
T Consensus 215 r~aAl~sL---r~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~i-FvdPY~hqlmPSilTcl 286 (450)
T COG5095 215 RDAALESL---RNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYI-FVDPYLHQLMPSILTCL 286 (450)
T ss_pred HHHHHHHh---ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCce-eecHHHHHHHHHHHHHH
Confidence 44554443 34445 46888888887664432 2333445566667777776654 46679999999887664
No 263
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.74 E-value=1.4e+02 Score=26.12 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 116 RDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 116 R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.-|..++|.++.-+.+ ...+.++-+..-..+.|+.++||..+..||
T Consensus 26 ~~A~~l~~~~~~~~~s----r~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL 71 (364)
T COG5330 26 LAARVLAFASLQRPLS----REDMRQFEDLARPLLDDSSEEVRRELAAAL 71 (364)
T ss_pred HHHHHHHHHHhcCccc----HHHHHHHHHHHHHHhhCccHHHHHHHHHHH
Confidence 3677777777775522 236788888888889999999999998876
No 264
>KOG1020|consensus
Probab=28.60 E-value=6.1e+02 Score=26.67 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=56.9
Q ss_pred CchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP 153 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~ 153 (165)
-+.+.=|..||..+...=|. -.-|-+..-|...+.++.-..|+||+=-+|--.= -......+.-..|.++..|+
T Consensus 830 ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl-----~~~e~~~qyY~~i~erIlDt 904 (1692)
T KOG1020|consen 830 IALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL-----SIPELIFQYYDQIIERILDT 904 (1692)
T ss_pred HHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh-----ccHHHHHHHHHHHHhhcCCC
Confidence 35555556666655554442 2337788889999999999999999988872211 11224667777888888888
Q ss_pred CHHHHHHHH
Q psy12576 154 DTQIRVAAL 162 (165)
Q Consensus 154 ~p~VR~aA~ 162 (165)
--.||.-++
T Consensus 905 gvsVRKRvI 913 (1692)
T KOG1020|consen 905 GVSVRKRVI 913 (1692)
T ss_pred chhHHHHHH
Confidence 888887764
No 265
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=28.31 E-value=95 Score=23.06 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=31.0
Q ss_pred hhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 105 NANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 105 ~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
.+.+.++||..--.-+=.+..=.+| -...+..+.+.+++++|+|..-|+.
T Consensus 11 ~~~l~~~dw~~ileicD~In~~~~~---------~k~a~rai~krl~~~n~~v~l~AL~ 60 (139)
T cd03567 11 NPSNREEDWEAIQAFCEQINKEPEG---------PQLAVRLLAHKIQSPQEKEALQALT 60 (139)
T ss_pred CccCCCCCHHHHHHHHHHHHcCCcc---------HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4566788885432222222211111 2346788899999999999988874
No 266
>PF14850 Pro_dh-DNA_bdg: DNA-binding domain of Proline dehydrogenase; PDB: 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A 3ITG_B 3E2R_A 1TJ1_A 1TIW_A ....
Probab=28.29 E-value=2.1e+02 Score=20.75 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=45.3
Q ss_pred CCchhhHHHHHHHHHHHHc---CCcchhhHHHHHhhhcccCchHHH---------HHHHHHHHHhhcCCcchhchHhHHH
Q psy12576 74 DWNPCKAAGVCLMLLSSCC---EEDMVPHILPFVNANIEHADWRHR---------DAALMSFGAILVRPSFIITISERNF 141 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~---~~~i~~~vl~~i~~~l~~~dw~~R---------~Aa~~Alg~i~EG~~~~~~~~~l~~ 141 (165)
|...+..=+.+|+.||.++ || -...=.+|...+...+|..- .|+.++|+--.--..... ......
T Consensus 9 EY~Lss~EGvaLMcLAEALLRVPD--~~T~d~LI~DKl~~~dW~~H~g~s~s~~VNastwgL~ltg~~~~~~~-~~~~~~ 85 (114)
T PF14850_consen 9 EYSLSSQEGVALMCLAEALLRVPD--AATADALIRDKLGSGDWKSHLGKSDSLFVNASTWGLMLTGRLLKPDD-EKNPAG 85 (114)
T ss_dssp CTT--HHHHHHHHHHHHHHHTSSS--HHHHHHHHHHTTTTT-HHHHHHHHHCTTTSCCHHHHHS------TT--HHHHHH
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHhcCChhhccCCCchHHHHHHHHHHHHHccccCCcc-ccCHHH
Confidence 3556666678899998874 44 23344678899999999865 244555543332222211 112233
Q ss_pred HHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 142 IMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 142 il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.+.-+++ +-.+|.||.|..+|
T Consensus 86 ~l~~l~~--r~GePvIR~A~~~A 106 (114)
T PF14850_consen 86 ALRRLIK--RLGEPVIRKAVRQA 106 (114)
T ss_dssp HHHHHCC--CC-HHHHHHHHHHH
T ss_pred HHHHHHH--HcCChHHHHHHHHH
Confidence 3332222 26789999998765
No 267
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=28.10 E-value=1.6e+02 Score=27.90 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhccCCCCCcCCC--chhhHHHHHHH-HHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDW--NPCKAAGVCLM-LLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew--~~~~~a~~~Ld-~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
.++|.|-+.|....- +||-+ ..--+|..|.| ..|..+- ..+++.++..+...-.+.+ .----+.+|+.++--
T Consensus 533 ~llp~L~~~L~~g~~--~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE--~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 533 NLLPWLKDLLKPGAS--EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDE--IVLQILYVFYQLLFH 608 (708)
T ss_pred CHHHHHHHHhCCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHH--HHHHHHHHHHHHHcC
Confidence 688888888874422 22211 22222333333 1222222 3467777777766555444 333456677777643
Q ss_pred Ccc-h-hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSF-I-ITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~-~-~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
... . +.+ -.++...++..+.|.|+.||..|=.||
T Consensus 609 ~~tr~~ll~--~~~~~~ylidL~~d~N~~ir~~~d~~L 644 (708)
T PF05804_consen 609 EETREVLLK--ETEIPAYLIDLMHDKNAEIRKVCDNAL 644 (708)
T ss_pred hHHHHHHHh--ccchHHHHHHHhcCCCHHHHHHHHHHH
Confidence 222 1 221 245788999999999999999886654
No 268
>PHA00657 crystallin beta/gamma motif-containing protein
Probab=27.46 E-value=1.3e+02 Score=30.93 Aligned_cols=83 Identities=20% Similarity=0.173 Sum_probs=44.3
Q ss_pred HHHhHHHHHHHHHhhcc---CCCCCcCCCch--hhHHHHHHHHHHHHcC--------------C------c-------ch
Q psy12576 50 GALQYLVPILTQKLTKQ---EELDDEDDWNP--CKAAGVCLMLLSSCCE--------------E------D-------MV 97 (165)
Q Consensus 50 ~~~~~l~p~ll~~l~~~---~ed~dddew~~--~~~a~~~Ld~la~~~~--------------~------~-------i~ 97 (165)
..|--++|.+|..+.+. ++|+|||+|.. .+-+..-++++...++ + + ++
T Consensus 1906 ~l~L~fiPavLg~lva~~L~~GD~dDeD~EdlAkKla~~q~~yl~~~vv~vr~~~~aa~~~t~~~~~~~~yt~~~gl~li 1985 (2052)
T PHA00657 1906 YAMLYVVPAVLGYFLKDALTPGDSGDDDPEKLAKKLLANQIDYLMGLMVVVREFGEAAKTVTGANDMGRDYTGPAGLRLI 1985 (2052)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcCcCCHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCCcccccccccCcchhHHH
Confidence 35566788888866643 44544445521 3445555666644322 0 1 12
Q ss_pred hhHHHHHhhhccc-CchHHHHHHHHHHHHhhcCCcc
Q psy12576 98 PHILPFVNANIEH-ADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 98 ~~vl~~i~~~l~~-~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
..+-.|..+.-+. -|-.+|+||+-..|-+.--++.
T Consensus 1986 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021 (2052)
T PHA00657 1986 ADVGRFATQTHQGEFDDAFRKAAVNVVGDLFGLPSA 2021 (2052)
T ss_pred HHHHHhhhhccccchhHHHHHHHHHHhhhhccCcHH
Confidence 2233333333222 2456888888888877655554
No 269
>KOG1851|consensus
Probab=27.42 E-value=6.6e+02 Score=26.51 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=57.4
Q ss_pred cHHHHHHHH--hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhccc-CchHHHHHHH
Q psy12576 44 SRFYAKGAL--QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH-ADWRHRDAAL 120 (165)
Q Consensus 44 ~~~~~~~~~--~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~-~dw~~R~Aa~ 120 (165)
+..+++.++ +++++.+.+.+.-.. +|..+|...=..|+..+.+++|+.++|.+-+..+..+.+ ....++-||-
T Consensus 1184 ~~k~i~~~F~~skf~~~l~~~~sie~----~D~~~Pa~~F~rifK~l~r~ygd~~~~~l~s~Le~l~~sk~~~~Q~laAE 1259 (1710)
T KOG1851|consen 1184 SEKIIRDAFSDSKFLSRLINFLSIEK----EDIFNPADTFCRIFKGLFRNYGDVKLPALKSHLELLMASKKENEQLLAAE 1259 (1710)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhcc----ccccChHHHHHHHHHHHHHhCCchhhhhhhHHHHHHHhcccchHHHHHHH
Confidence 334666654 688888888887544 235677554445899999999998888555666666654 4578889999
Q ss_pred HHHHHhh
Q psy12576 121 MSFGAIL 127 (165)
Q Consensus 121 ~Alg~i~ 127 (165)
+-.|-|-
T Consensus 1260 ilaG~i~ 1266 (1710)
T KOG1851|consen 1260 ILAGLIH 1266 (1710)
T ss_pred HHHHHHh
Confidence 8888765
No 270
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=26.83 E-value=48 Score=23.77 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=13.6
Q ss_pred HHHhhcCCCCHHHHHHHHh
Q psy12576 145 VVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 145 ~v~~~l~D~~p~VR~aA~~ 163 (165)
.+...|.+|++.||.-|..
T Consensus 51 aLl~LL~hpn~~VRl~AA~ 69 (106)
T PF09450_consen 51 ALLPLLKHPNMQVRLWAAA 69 (106)
T ss_dssp GGGGGGGSS-HHHHHHHHH
T ss_pred HHHHHHcCCChhHHHHHHH
Confidence 3466788999999986643
No 271
>KOG2021|consensus
Probab=26.69 E-value=4.3e+02 Score=25.79 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=41.0
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
+.+.+....+-+|..++|++++|.+=..++-.++|.|.+.-.-=+--+.++.
T Consensus 712 ~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLi 763 (980)
T KOG2021|consen 712 NIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLI 763 (980)
T ss_pred hhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 6678888899999999999999999888899999999885544333444444
No 272
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.64 E-value=1.7e+02 Score=20.23 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 138 ERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 138 ~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
....++..+.+.+++++|+|..-|+..
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~l 60 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTL 60 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 356789999999999999999888753
No 273
>KOG4535|consensus
Probab=25.66 E-value=89 Score=28.74 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=28.6
Q ss_pred chhhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 96 MVPHILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
++-.+...|++++.+.|+..|-.+++.+|.|.-
T Consensus 147 ~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~ 179 (728)
T KOG4535|consen 147 LLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVS 179 (728)
T ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHh
Confidence 455677888999999999999999999999874
No 274
>KOG4412|consensus
Probab=25.55 E-value=63 Score=25.87 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHH
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAG 82 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~ 82 (165)
.++..|++..--..+|.||..|+|-..|+
T Consensus 52 eiv~fLlsq~nv~~ddkDdaGWtPlhia~ 80 (226)
T KOG4412|consen 52 EIVYFLLSQPNVKPDDKDDAGWTPLHIAA 80 (226)
T ss_pred hHHHHHHhcCCCCCCCccccCCchhhhhh
Confidence 46777776322233455666799976654
No 275
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=25.53 E-value=45 Score=28.99 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=17.9
Q ss_pred HHHHhhcCCCCHHHHHHHHhcC
Q psy12576 144 EVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 144 ~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.|.+.+++|+++||+.|++|+
T Consensus 402 ~~im~L~nh~d~~VkfeAl~a~ 423 (432)
T COG5231 402 EIIMNLINHDDDDVKFEALQAL 423 (432)
T ss_pred HHHHHHhcCCCchhhHHHHHHH
Confidence 3456778899999999998864
No 276
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=25.17 E-value=79 Score=25.34 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=35.8
Q ss_pred hhhcccCchHHHHHHHHHHH------HhhcCCcchhchHhHHHHHHHHHhhcC-CCCHHHHHHH
Q psy12576 105 NANIEHADWRHRDAALMSFG------AILVRPSFIITISERNFIMEVVCEATQ-SPDTQIRVAA 161 (165)
Q Consensus 105 ~~~l~~~dw~~R~Aa~~Alg------~i~EG~~~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA 161 (165)
+.+|-+-+-.++.-.+.|+| ..++|=.+. .+++.|...+|+++. ||+ .+|.-|
T Consensus 34 E~HLl~~n~~f~yD~lfAlGlvt~fd~fm~GY~Pe---e~~~~IF~Alc~a~~~dp~-~~r~dA 93 (206)
T PLN03060 34 QQHLMRYNATYKYDPIFALGFVTVYDQLMDGYPNA---TDRDAIFKAYIEALGEDPD-QYRKDA 93 (206)
T ss_pred HHHHHHhccCceeCchHHhhHHHHHHHHHcCCCCh---HHHHHHHHHHHHHcCCCHH-HHHHHH
Confidence 44665666666767777777 456775542 478999999999998 554 445444
No 277
>KOG1293|consensus
Probab=25.02 E-value=2.9e+02 Score=26.12 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=53.2
Q ss_pred chhhHHHHHHHHHHHHc-----C---CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhh-cCCcchhchHhHHHHHHHH
Q psy12576 76 NPCKAAGVCLMLLSSCC-----E---EDMVPHILPFVNANIEHADWRHRDAALMSFGAIL-VRPSFIITISERNFIMEVV 146 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~-----~---~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~-EG~~~~~~~~~l~~il~~v 146 (165)
....||.-|+-.++..+ | +++..+++|.. .+|+-....+++=|+..+. |+-.- ..+-.....+..+
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll----~dp~~~i~~~~lgai~NlVmefs~~-kskfl~~ngId~l 466 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL----MDPEIMIMGITLGAICNLVMEFSNL-KSKFLRNNGIDIL 466 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh----hCcchhHHHHHHHHHHHHHhhcccH-HHHHHHcCcHHHH
Confidence 34455555555543322 2 25666666655 6777777777766666655 33332 2222467788899
Q ss_pred HhhcCCCCHHHHHHHHhc
Q psy12576 147 CEATQSPDTQIRVAALQC 164 (165)
Q Consensus 147 ~~~l~D~~p~VR~aA~~a 164 (165)
.+.+.|+++-+|..+...
T Consensus 467 ~s~~~~~~~n~r~~~~~~ 484 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWV 484 (678)
T ss_pred HHHhcCCCchHHHHHHHH
Confidence 999999999999877654
No 278
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=24.66 E-value=5.6e+02 Score=23.69 Aligned_cols=131 Identities=16% Similarity=0.171 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhHhh-hhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHH
Q psy12576 7 EVALQGIEFWSNVSDEE-VDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCL 85 (165)
Q Consensus 7 ~va~~aiEfw~tl~e~e-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~L 85 (165)
+.+-+||+=.-.|||.| ..+.....+.+ | ..|+. -...++.+..+|.++|... |-.-..+...+|
T Consensus 55 ~l~~~Ai~a~~DLcEDed~~iR~~aik~l-----p-~~ck~-~~~~v~kvaDvL~QlL~td-------d~~E~~~v~~sL 120 (556)
T PF05918_consen 55 DLQEEAINAQLDLCEDEDVQIRKQAIKGL-----P-QLCKD-NPEHVSKVADVLVQLLQTD-------DPVELDAVKNSL 120 (556)
T ss_dssp GGHHHHHHHHHHHHT-SSHHHHHHHHHHG-----G-GG--T---T-HHHHHHHHHHHTT----------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhH-----H-HHHHh-HHHHHhHHHHHHHHHHhcc-------cHHHHHHHHHHH
Confidence 44567777777888744 33333332221 1 01111 1123356888999988842 123344555566
Q ss_pred HHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhch--HhH-HHHHHHHHhhcCC
Q psy12576 86 MLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITI--SER-NFIMEVVCEATQS 152 (165)
Q Consensus 86 d~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~--~~l-~~il~~v~~~l~D 152 (165)
..|-..-+...+..++..|... .+.|-..|+=.+-.+..-+--.....++ .+. ..|+..|.+.|+|
T Consensus 121 ~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 121 MSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 6665555545566666655432 1233345554444443222212222222 233 4444555555555
No 279
>KOG4199|consensus
Probab=24.26 E-value=5e+02 Score=22.95 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=30.8
Q ss_pred chhhHHHHHHHHHHHHcC-Cc----ch-----hhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 76 NPCKAAGVCLMLLSSCCE-ED----MV-----PHILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~-~~----i~-----~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
..+..+-+||..|.-..| |. |+ |.+......+. .++...+.++.++.-+.
T Consensus 299 ~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~--~~p~Vi~~~~a~i~~l~ 358 (461)
T KOG4199|consen 299 GNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS--DDPLVIQEVMAIISILC 358 (461)
T ss_pred hHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--CChHHHHHHHHHHHHHH
Confidence 445788999999988888 43 22 33444433333 44556666666666554
No 280
>KOG2463|consensus
Probab=24.07 E-value=53 Score=28.36 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=21.2
Q ss_pred cCCCCCcCCC-chhhHHHHHHHHHHHHcCC
Q psy12576 66 QEELDDEDDW-NPCKAAGVCLMLLSSCCEE 94 (165)
Q Consensus 66 ~~ed~dddew-~~~~~a~~~Ld~la~~~~~ 94 (165)
.+||.|||.| ++.....+.+...|...|+
T Consensus 174 ~~ed~DdDgwitp~ni~~~~~e~~al~~pe 203 (376)
T KOG2463|consen 174 VEEDADDDGWITPSNITEAIIELGALNRPE 203 (376)
T ss_pred cccccccccccccchHHHHHHhhhcccccc
Confidence 3456666779 8888888888877777774
No 281
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=24.00 E-value=91 Score=17.66 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHhcC
Q psy12576 151 QSPDTQIRVAALQCL 165 (165)
Q Consensus 151 ~D~~p~VR~aA~~al 165 (165)
.|+++.||..|-.+|
T Consensus 16 ~D~D~lvr~hA~~~L 30 (36)
T PF10304_consen 16 TDNDDLVREHAQDAL 30 (36)
T ss_pred hCCcHHHHHHHHHHH
Confidence 499999999997654
No 282
>KOG2549|consensus
Probab=23.90 E-value=2.2e+02 Score=26.35 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=46.8
Q ss_pred HHHHHHHHHcC-CcchhhHHHHHhhhcccC----chHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576 83 VCLMLLSSCCE-EDMVPHILPFVNANIEHA----DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 83 ~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~----dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
.+|..|..--| ..++|.+..||.+.+.-. |-+.=--.+.-.-+++.-+.- .+++|++++||.|+..+.
T Consensus 226 eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i-~lepYlh~L~PSvlTCvV 298 (576)
T KOG2549|consen 226 EALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI-FLEPYLHQLVPSVLTCVV 298 (576)
T ss_pred HHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc-chhhHHHHHhhHHHHhhh
Confidence 34777777777 578899999998866543 333333444445566766655 477899999999887763
No 283
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=23.69 E-value=5.3e+02 Score=22.98 Aligned_cols=68 Identities=21% Similarity=0.089 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-C-cchhh--HHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-E-DMVPH--ILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~-~i~~~--vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
.++..|.++|.+.+ |.-+. -.|..=|.-+..++| + .++.. .-..|.+.+.++|...|+-|++|++-++
T Consensus 353 ~llk~L~~iL~~s~-----d~~~l-aVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 353 ELLKILIHLLETSV-----DPIIL-AVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHhcCC-----Cccee-ehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 46777888874322 11222 344455667778877 2 45543 4466778889999999999999998775
No 284
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=23.42 E-value=2.1e+02 Score=22.79 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=34.0
Q ss_pred hhhHHHHHhh----hcccCchHHHHHHHHHHHHhhcCCcch--hch-HhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 97 VPHILPFVNA----NIEHADWRHRDAALMSFGAILVRPSFI--ITI-SERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 97 ~~~vl~~i~~----~l~~~dw~~R~Aa~~Alg~i~EG~~~~--~~~-~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
-..++..+.+ ...+++-.|| +++|+|.++.+.... ... -....++....+ ..+++||+..+-+
T Consensus 198 ~~~ll~~i~~~~~~~~~d~Ea~~R--~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~--~~~e~ri~~v~~e 267 (268)
T PF08324_consen 198 QSELLSSIIEVLSREESDEEALYR--LLVALGTLLSSSDSAKQLAKSLDVKSVLSKKAN--KSKEPRIKEVAAE 267 (268)
T ss_dssp HHHHHHHHHHHCHCCHTSHHHHHH--HHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHH--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHH--HHHHHHHHhccChhHHHHHHHcChHHHHHHHHh--cccchHHHHHhcc
Confidence 3335555544 2234555554 899999999544331 111 012333333222 5788999887753
No 285
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=23.25 E-value=1.5e+02 Score=28.12 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHHHcCC-------cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchH-hHHHHHHHHHh
Q psy12576 77 PCKAAGVCLMLLSSCCEE-------DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITIS-ERNFIMEVVCE 148 (165)
Q Consensus 77 ~~~~a~~~Ld~la~~~~~-------~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~-~l~~il~~v~~ 148 (165)
..-.+..+|..||..-.+ .++|.+.. .+.+++-..+..++..|.+++....- +.. --..++|.++.
T Consensus 306 llil~v~fLkkLSi~~ENK~~m~~~giV~kL~k----Ll~s~~~~l~~~aLrlL~NLSfd~~~--R~~mV~~GlIPkLv~ 379 (708)
T PF05804_consen 306 LLILAVTFLKKLSIFKENKDEMAESGIVEKLLK----LLPSENEDLVNVALRLLFNLSFDPEL--RSQMVSLGLIPKLVE 379 (708)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHH----HhcCCCHHHHHHHHHHHHHhCcCHHH--HHHHHHCCCcHHHHH
Confidence 455677788888754442 24555554 44567778899999999999975543 221 22456778888
Q ss_pred hcCCCCH
Q psy12576 149 ATQSPDT 155 (165)
Q Consensus 149 ~l~D~~p 155 (165)
.+.|++-
T Consensus 380 LL~d~~~ 386 (708)
T PF05804_consen 380 LLKDPNF 386 (708)
T ss_pred HhCCCch
Confidence 8887653
No 286
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.07 E-value=2.1e+02 Score=21.39 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=39.9
Q ss_pred CCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 73 DDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 73 dew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
++|. .++|..++-..... +.-.+.++..+...+.+++...|+|.-.+|..++--
T Consensus 118 ~~~~-rR~~~~~~~~~~~~--~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 118 NEWV-RRAAIVLLLRLIKK--ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred cHHH-HHHHHHHHHHHHHh--cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 4566 45555554443333 345888999999999999999999999999988753
No 287
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=23.06 E-value=90 Score=25.17 Aligned_cols=53 Identities=13% Similarity=0.280 Sum_probs=34.7
Q ss_pred hhhcccCchHHHHHHHHHHH------HhhcCCcchhchHhHHHHHHHHHhhcC-CCCHHHHHHH
Q psy12576 105 NANIEHADWRHRDAALMSFG------AILVRPSFIITISERNFIMEVVCEATQ-SPDTQIRVAA 161 (165)
Q Consensus 105 ~~~l~~~dw~~R~Aa~~Alg------~i~EG~~~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA 161 (165)
+.+|-+-+-.++.-.+.|+| ..++|=.+. .+++.|...+|+++. ||+ .+|.-|
T Consensus 36 ElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pe---e~~~~IF~Alc~a~~~dp~-~~r~dA 95 (214)
T TIGR03060 36 ELHLLSHQSDFKYDPLFALGLVTVFDRFMEGYRPE---EHLDALFDALCNSNGFDPE-QLREDA 95 (214)
T ss_pred HHHHHHhccCceeCchHHhhHHHHHHHHHcCCCCh---HHHHHHHHHHHHhcCCCHH-HHHHHH
Confidence 34555555556666666666 556776553 478999999999998 554 455444
No 288
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=22.87 E-value=78 Score=23.14 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 138 ERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 138 ~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
....|+.++.+.|+|.+|.|+.=|+-
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lr 60 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLK 60 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 46788999999999999999766654
No 289
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=22.29 E-value=3.4e+02 Score=20.27 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
|..+|.++..+. |+.......+...|-.--+ --....+.++..++.+ ...|+-|+-.|... ++
T Consensus 38 p~~lp~~L~sv~----------w~~~~~~~e~~~lL~~W~~-~~~~~aL~LL~~~~~~--~~vr~yAv~~L~~~----~~ 100 (152)
T cd00864 38 PKALPKLLKSVN----------WNDDEEVSELYQLLKWWAP-LSPEDALELLSPKYPD--PVVRQYAVRVLESA----SD 100 (152)
T ss_pred hHHHHHHHHHcc----------CCCHHHHHHHHHHHhcCCC-CCHHHHHHHcCCcCCC--HHHHHHHHHHHHhC----CH
Confidence 567777776665 3333333333443333111 1133456666666655 67888777776553 33
Q ss_pred hhchHhHHHHHHHH
Q psy12576 133 IITISERNFIMEVV 146 (165)
Q Consensus 133 ~~~~~~l~~il~~v 146 (165)
..+..+++++++.+
T Consensus 101 ~~l~~ylpQLVQaL 114 (152)
T cd00864 101 DELLLYLPQLVQAL 114 (152)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444666666654
No 290
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=22.26 E-value=1.2e+02 Score=23.14 Aligned_cols=74 Identities=8% Similarity=-0.030 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC
Q psy12576 77 PCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS 152 (165)
Q Consensus 77 ~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D 152 (165)
....+...+|+++..+-+.- .+-.--..+-..+.|..|-+|+..|-+++-.+.-...-..-+..+|.++..+.|
T Consensus 74 q~~~e~~iIdrvt~~L~E~P--~~d~~~~~~t~~~i~~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 74 QKNVENYIIDRVTNLLSEPP--KVDEGWAPYTPAEICTLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred hhhHHHHHHHHHHHHccCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 33455588999999887621 111122234555678999999999998886555432222456777777776654
No 291
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=22.15 E-value=1.8e+02 Score=21.07 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=40.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccC--chHHHHHHHHHHHHhh-cCCcch
Q psy12576 73 DDWNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHA--DWRHRDAALMSFGAIL-VRPSFI 133 (165)
Q Consensus 73 dew~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~--dw~~R~Aa~~Alg~i~-EG~~~~ 133 (165)
|.|.|+. ..+.-+|...-+ .-++.++..+.+.|.+. +|+.-.=|+.-+--++ .|+...
T Consensus 13 d~wGp~~---~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~v 74 (123)
T cd03571 13 DPWGPSG---TLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERV 74 (123)
T ss_pred CCCCCCH---HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHH
Confidence 4598763 346666666553 45788999999999876 8999877776666544 687764
No 292
>PRK13266 Thf1-like protein; Reviewed
Probab=22.05 E-value=95 Score=25.20 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=34.5
Q ss_pred hhhcccCchHHHHHHHHHHH------HhhcCCcchhchHhHHHHHHHHHhhcC-CCCHHHHHHH
Q psy12576 105 NANIEHADWRHRDAALMSFG------AILVRPSFIITISERNFIMEVVCEATQ-SPDTQIRVAA 161 (165)
Q Consensus 105 ~~~l~~~dw~~R~Aa~~Alg------~i~EG~~~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA 161 (165)
+.+|-+-+-.++.-.+.|+| ..++|=.+. .+++.|...+|+++. ||+ .+|.-|
T Consensus 36 ElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pe---e~~~~IF~Alc~a~~~dp~-~~r~dA 95 (225)
T PRK13266 36 ELHLLSVNSDFKYDPLFALGLVTVFDRFMQGYRPE---EHKDSIFNALCQAVGFDPE-QLRQDA 95 (225)
T ss_pred HHHHHHhccCceeCchHHhhHHHHHHHHHcCCCCh---HHHHHHHHHHHHHcCCCHH-HHHHHH
Confidence 34555555556666666666 566776553 478999999999998 554 445444
No 293
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=21.45 E-value=59 Score=28.43 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=44.8
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc----C-CCCHHHHHHHHhcC
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT----Q-SPDTQIRVAALQCL 165 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l----~-D~~p~VR~aA~~al 165 (165)
.+..+++..+...++|++.+.-+.|+.-+..-- .- .....+.+.++|.+.+.+ + +=+..||..|+++|
T Consensus 293 ~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~--~~-~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl 365 (409)
T PF01603_consen 293 KIMVPLFKRLAKCISSPHFQVAERALYFWNNEY--FL-SLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVL 365 (409)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHH--HH-HHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHH--HH-HHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 367788999999999999998888876554210 00 012234556666666664 3 33688999998764
No 294
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.31 E-value=59 Score=30.34 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=49.5
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
+.-.|..+.+++...+...+-.|++.+|.-+-|..+ +++.+|-.+-+.++.++.+.|.||+-
T Consensus 411 ~d~gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~-----E~~palalLs~yl~s~s~k~~~aaiL 472 (881)
T COG5110 411 SDKGLETLDKYLYADESYRKAGALLGIGLSGLRVFE-----ERPPALALLSNYLQSSSSKHVIAAIL 472 (881)
T ss_pred hHhhHHHHHHHHhcCcccccccceeeeeeccccccc-----ccchHHHHHHHhccCCchHHHHHHHh
Confidence 455788889999988877777788888766554432 68999999999999999999999864
No 295
>KOG1048|consensus
Probab=21.25 E-value=1.7e+02 Score=27.84 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=34.9
Q ss_pred HHHhhhcccCchHHHHHHHHHHHHhhcCCcch-hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 102 PFVNANIEHADWRHRDAALMSFGAILVRPSFI-ITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 102 ~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
|-+..++.++++.+.-.|--=+.-+.-|-.+. +....+.. ++.++..+..+++.|+.+||-||
T Consensus 236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlgg-I~kLv~Ll~~~~~evq~~acgaL 299 (717)
T KOG1048|consen 236 PEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGG-IPKLVALLDHRNDEVQRQACGAL 299 (717)
T ss_pred HHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhcc-HHHHHHHhcCCcHHHHHHHHHHH
Confidence 33444555665544422222222233333332 22223444 45678899999999999999875
No 296
>KOG3961|consensus
Probab=20.21 E-value=5e+02 Score=21.38 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---chhhHHHHHhhhcccCchHHHHHHHHHHHHhh--
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MVPHILPFVNANIEHADWRHRDAALMSFGAIL-- 127 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~-- 127 (165)
..++|..+.-|.+.+ .--.-.|.+.+--|-.+.|++ ++|.++.-+...+++-|-+...-++.+|..+.
T Consensus 113 ~~yLp~F~dGL~e~~-------hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~ 185 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETD-------HPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVS 185 (262)
T ss_pred hHHHHHHhhhhhhcC-------CCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 357888888888543 111234555566666677765 45667777888999999888888888888554
Q ss_pred cCCcchhchHhHHHHHHHHHhhcC
Q psy12576 128 VRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 128 EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
-||--..+-+.-.+++|+ |+..+
T Consensus 186 ~~~vG~aLVPfYRQlLp~-~n~~k 208 (262)
T KOG3961|consen 186 VGCVGAALVPFYRQLLPV-LNTFK 208 (262)
T ss_pred ccccchhhhhHHHHhhhh-hhhhc
Confidence 454443444555667774 45443
No 297
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=20.21 E-value=3.2e+02 Score=19.26 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=40.6
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhc---ccCchHHHHHHHHHHHHhh-cCCcch
Q psy12576 73 DDWNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANI---EHADWRHRDAALMSFGAIL-VRPSFI 133 (165)
Q Consensus 73 dew~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l---~~~dw~~R~Aa~~Alg~i~-EG~~~~ 133 (165)
|+|.|. +.-+..||+..=+ .-.+.++.++...+ ...+|+...=|+.-|=-++ .|+..+
T Consensus 15 d~~gp~---~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~ 77 (125)
T PF01417_consen 15 DPWGPP---GKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF 77 (125)
T ss_dssp SSSS-----HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH
T ss_pred CCCCcC---HHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH
Confidence 468653 4457788877654 56788999999998 7788999977777766665 577653
No 298
>KOG1993|consensus
Probab=20.07 E-value=3.3e+02 Score=26.64 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=38.9
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccC---------chHHHHHHHHHHHHhh
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHA---------DWRHRDAALMSFGAIL 127 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~---------dw~~R~Aa~~Alg~i~ 127 (165)
+.+-||......+=..+++-++|+++.++.+-.+.+ .--.+.|.+-|+|..+
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a 472 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAA 472 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 778899988888888888889999999995533322 2445678888888443
No 299
>KOG2973|consensus
Probab=20.07 E-value=1.8e+02 Score=25.10 Aligned_cols=51 Identities=10% Similarity=0.015 Sum_probs=33.0
Q ss_pred HhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576 104 VNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT 155 (165)
Q Consensus 104 i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p 155 (165)
+-..+.++++..|++|+--+....-+ .-....++-...++.+.+.+.|+.|
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc
Confidence 34567788888999988655444333 2223445566677777777777766
Done!