Query psy12576
Match_columns 165
No_of_seqs 151 out of 658
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 22:52:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ibr_B P95, importin beta-1 su 99.9 1.6E-25 5.5E-30 188.0 14.5 163 3-165 270-432 (462)
2 1qgr_A Protein (importin beta 99.9 2.4E-22 8E-27 181.1 16.1 164 2-165 269-432 (876)
3 2bpt_A Importin beta-1 subunit 99.9 2.8E-21 9.6E-26 173.8 16.1 160 2-165 276-435 (861)
4 4fdd_A Transportin-1; heat rep 99.9 1.9E-21 6.4E-26 177.4 12.8 144 2-165 266-424 (852)
5 2x1g_F Cadmus; transport prote 99.7 5.3E-17 1.8E-21 149.8 13.6 151 3-165 364-530 (971)
6 1wa5_C Importin alpha RE-expor 99.7 2.7E-17 9.2E-22 152.4 9.2 143 4-165 304-482 (960)
7 3m1i_C Exportin-1; heat repeat 99.6 8.8E-16 3E-20 143.6 9.7 148 2-164 354-523 (1049)
8 2x19_B Importin-13; nuclear tr 99.6 2.1E-15 7.1E-20 138.7 8.3 150 4-165 352-513 (963)
9 4hat_C Exportin-1; heat repeat 99.5 1.6E-14 5.5E-19 135.9 9.7 147 3-164 355-523 (1023)
10 3ibv_A Exportin-T; karyopherin 99.3 4.5E-12 1.5E-16 118.8 9.6 151 2-164 342-518 (980)
11 1b3u_A Protein (protein phosph 99.2 7.6E-11 2.6E-15 101.3 10.9 104 52-165 201-305 (588)
12 2qk2_A LP04448P; mini spindles 99.1 7.7E-10 2.6E-14 86.8 13.0 107 49-165 93-200 (242)
13 2qk1_A Protein STU2; STU2P, XM 99.0 2.4E-09 8.1E-14 85.7 11.8 109 50-165 100-215 (249)
14 1b3u_A Protein (protein phosph 99.0 2.6E-09 8.8E-14 91.7 12.1 157 2-165 174-348 (588)
15 1u6g_C TIP120 protein, CAND1; 98.8 4E-09 1.4E-13 99.4 7.7 67 97-164 432-500 (1230)
16 2qk2_A LP04448P; mini spindles 98.8 7.3E-09 2.5E-13 81.2 7.8 103 55-165 16-122 (242)
17 4fdd_A Transportin-1; heat rep 98.8 9.4E-09 3.2E-13 93.6 6.9 107 52-165 357-466 (852)
18 2bpt_A Importin beta-1 subunit 98.6 2.1E-07 7.3E-12 83.4 11.8 111 47-165 404-524 (861)
19 1qgr_A Protein (importin beta 98.6 1.5E-07 5.2E-12 84.5 9.3 106 52-165 364-474 (876)
20 2jdq_A Importin alpha-1 subuni 98.6 1.7E-07 5.7E-12 78.1 8.6 104 54-165 234-342 (450)
21 1ibr_B P95, importin beta-1 su 98.6 1.5E-06 5.2E-11 72.2 14.5 89 76-165 105-198 (462)
22 1u6g_C TIP120 protein, CAND1; 98.6 5.2E-07 1.8E-11 85.1 12.4 107 51-165 83-199 (1230)
23 4ffb_C Protein STU2; tubulin f 98.5 1.6E-06 5.6E-11 69.3 13.5 138 4-165 67-207 (278)
24 3gjx_A Exportin-1; transport, 98.5 4.9E-07 1.7E-11 85.7 10.7 158 3-162 362-547 (1073)
25 1wa5_C Importin alpha RE-expor 98.5 7.5E-07 2.6E-11 82.5 11.6 111 50-165 395-520 (960)
26 3ltm_A Alpha-REP4; protein eng 98.5 2.1E-06 7E-11 65.2 11.8 133 2-164 29-166 (211)
27 3ltj_A Alpharep-4; protein eng 98.5 2.3E-06 7.9E-11 64.4 11.8 133 2-164 24-161 (201)
28 2of3_A ZYG-9; multifunctional 98.5 1.8E-06 6.3E-11 70.1 11.8 95 54-165 132-231 (266)
29 4db6_A Armadillo repeat protei 98.5 1.2E-06 4E-11 66.1 10.0 137 2-165 22-162 (210)
30 2qk1_A Protein STU2; STU2P, XM 98.4 3E-07 1E-11 73.3 6.2 92 74-165 29-128 (249)
31 3ltm_A Alpha-REP4; protein eng 98.4 3.5E-06 1.2E-10 63.9 11.2 134 2-165 60-198 (211)
32 4db8_A Armadillo-repeat protei 98.4 1.3E-06 4.4E-11 67.6 8.8 105 54-165 96-204 (252)
33 1te4_A Conserved protein MTH18 98.4 7E-07 2.4E-11 63.7 6.4 85 56-165 44-128 (131)
34 4db6_A Armadillo repeat protei 98.4 2.4E-06 8.2E-11 64.4 9.3 105 54-165 96-204 (210)
35 1wa5_B Importin alpha subunit; 98.3 9.7E-07 3.3E-11 76.1 7.8 105 54-165 299-407 (530)
36 4db8_A Armadillo-repeat protei 98.3 2.8E-06 9.5E-11 65.7 9.5 105 54-165 54-162 (252)
37 4hxt_A De novo protein OR329; 98.3 5.3E-06 1.8E-10 63.5 10.8 105 54-165 128-236 (252)
38 1oyz_A Hypothetical protein YI 98.3 4.6E-06 1.6E-10 65.9 10.5 78 75-164 105-182 (280)
39 3ltj_A Alpharep-4; protein eng 98.3 8.4E-06 2.9E-10 61.3 11.4 134 2-165 55-193 (201)
40 4hxt_A De novo protein OR329; 98.3 5.1E-06 1.7E-10 63.6 10.2 105 54-165 86-194 (252)
41 3a6p_A Exportin-5; exportin-5, 98.3 1.5E-06 5E-11 83.0 7.6 145 2-164 361-555 (1204)
42 2jdq_A Importin alpha-1 subuni 98.2 1.1E-05 3.9E-10 66.9 11.4 106 54-165 149-258 (450)
43 1wa5_B Importin alpha subunit; 98.2 7.9E-06 2.7E-10 70.4 10.3 106 53-165 256-365 (530)
44 4b8j_A Importin subunit alpha- 98.2 1E-05 3.5E-10 69.4 10.5 106 54-165 202-310 (528)
45 1oyz_A Hypothetical protein YI 98.2 6.5E-06 2.2E-10 65.0 8.5 75 75-165 142-216 (280)
46 2vgl_B AP-2 complex subunit be 98.1 3E-05 1E-09 68.3 12.5 79 84-165 106-184 (591)
47 1xqr_A HSPBP1 protein; armadil 98.0 3.6E-05 1.2E-09 62.9 10.0 138 2-165 92-233 (296)
48 4b8j_A Importin subunit alpha- 97.9 1.7E-05 5.8E-10 68.1 6.8 105 54-165 286-395 (528)
49 2iw3_A Elongation factor 3A; a 97.9 5.4E-05 1.8E-09 71.2 9.6 103 54-164 95-198 (986)
50 2vgl_B AP-2 complex subunit be 97.8 4.7E-05 1.6E-09 67.1 8.1 83 75-165 63-145 (591)
51 1w63_A Adapter-related protein 97.8 1.5E-05 5.1E-10 70.9 4.1 79 82-165 125-203 (618)
52 1te4_A Conserved protein MTH18 97.8 2.4E-05 8.3E-10 55.6 4.4 86 54-165 12-97 (131)
53 2db0_A 253AA long hypothetical 97.6 0.00036 1.2E-08 54.5 8.7 141 8-165 48-205 (253)
54 3oc3_A Helicase MOT1, MOT1; re 97.6 0.00023 7.8E-09 63.7 8.5 81 76-165 243-323 (800)
55 3tpo_A Importin subunit alpha- 97.5 0.00022 7.5E-09 61.8 7.5 105 54-165 293-401 (529)
56 3ul1_B Importin subunit alpha- 97.5 0.00017 5.9E-09 62.3 6.2 105 54-165 274-382 (510)
57 2x1g_F Cadmus; transport prote 97.4 0.0024 8.1E-08 58.8 14.0 132 5-148 141-293 (971)
58 4hat_C Exportin-1; heat repeat 97.4 0.00015 5.1E-09 68.4 5.7 109 54-165 447-564 (1023)
59 1jdh_A Beta-catenin; beta-cate 97.4 0.0013 4.6E-08 55.5 10.8 105 54-164 59-166 (529)
60 1xqr_A HSPBP1 protein; armadil 97.3 0.00038 1.3E-08 56.8 6.5 104 55-165 82-191 (296)
61 3tpo_A Importin subunit alpha- 97.3 0.00035 1.2E-08 60.5 6.0 106 53-165 250-359 (529)
62 2x19_B Importin-13; nuclear tr 97.3 0.00062 2.1E-08 62.4 7.9 88 73-165 461-551 (963)
63 3ibv_A Exportin-T; karyopherin 97.3 0.00047 1.6E-08 64.7 7.1 90 74-165 456-561 (980)
64 3tjz_B Coatomer subunit gamma; 97.2 0.0019 6.5E-08 54.3 9.8 78 82-164 122-199 (355)
65 3ul1_B Importin subunit alpha- 97.2 0.0022 7.6E-08 55.3 10.4 110 54-165 185-298 (510)
66 4gmo_A Putative uncharacterize 97.1 0.00032 1.1E-08 63.1 4.4 64 100-165 36-100 (684)
67 1w63_A Adapter-related protein 97.1 0.00077 2.6E-08 59.8 6.8 81 75-165 84-166 (618)
68 2z6h_A Catenin beta-1, beta-ca 97.1 0.0023 7.9E-08 56.5 9.7 106 54-165 56-164 (644)
69 2vgl_A Adaptor protein complex 97.1 0.00037 1.3E-08 62.2 4.4 83 75-165 88-172 (621)
70 3tjz_B Coatomer subunit gamma; 97.1 0.0016 5.5E-08 54.7 7.9 81 75-164 82-162 (355)
71 2vgl_A Adaptor protein complex 97.1 0.00038 1.3E-08 62.0 4.2 80 82-164 129-210 (621)
72 3now_A UNC-45 protein, SD10334 97.1 0.0039 1.3E-07 57.6 11.0 105 54-165 536-647 (810)
73 3m1i_C Exportin-1; heat repeat 97.1 0.00087 3E-08 62.6 6.8 90 74-165 466-564 (1049)
74 2z6g_A B-catenin; FULL-length, 97.0 0.001 3.4E-08 60.7 6.3 105 54-165 360-467 (780)
75 2z6g_A B-catenin; FULL-length, 96.9 0.005 1.7E-07 56.0 10.2 107 53-165 191-300 (780)
76 3now_A UNC-45 protein, SD10334 96.8 0.0046 1.6E-07 57.1 8.9 133 3-164 301-444 (810)
77 3nmw_A APC variant protein; AR 96.8 0.006 2.1E-07 50.8 8.8 110 53-165 213-329 (354)
78 1vsy_5 Proteasome activator BL 96.7 0.00019 6.4E-09 67.7 -1.1 87 77-165 777-868 (997)
79 3opb_A SWI5-dependent HO expre 96.6 0.019 6.5E-07 52.8 11.5 108 54-165 498-630 (778)
80 1xm9_A Plakophilin 1; armadill 96.5 0.0086 3E-07 50.9 8.1 103 56-165 4-111 (457)
81 1jdh_A Beta-catenin; beta-cate 96.5 0.0049 1.7E-07 52.0 6.4 90 76-165 242-334 (529)
82 3nmz_A APC variant protein; pr 96.4 0.014 4.7E-07 50.4 9.1 109 53-165 329-445 (458)
83 3tt9_A Plakophilin-2; cell adh 96.3 0.012 4E-07 46.5 7.6 105 55-164 9-118 (233)
84 1lrv_A LRV, leucine-rich repea 96.3 0.0028 9.5E-08 50.5 3.8 44 103-165 198-241 (244)
85 2z6h_A Catenin beta-1, beta-ca 96.2 0.0069 2.4E-07 53.4 6.2 104 55-165 225-331 (644)
86 3l9t_A Putative uncharacterize 96.2 0.026 8.8E-07 45.0 8.9 74 76-164 86-162 (240)
87 3nmw_A APC variant protein; AR 96.2 0.03 1E-06 46.5 9.8 106 54-165 170-287 (354)
88 4ffb_C Protein STU2; tubulin f 96.2 0.041 1.4E-06 43.4 10.1 82 78-165 72-163 (278)
89 4ady_A RPN2, 26S proteasome re 96.2 0.018 6.2E-07 54.1 8.9 77 77-165 594-671 (963)
90 3nmz_A APC variant protein; pr 95.9 0.097 3.3E-06 45.1 12.0 106 54-165 286-403 (458)
91 3gjx_A Exportin-1; transport, 95.5 0.014 4.8E-07 55.4 5.4 109 54-165 473-590 (1073)
92 3b2a_A TON_1937, putative unch 95.5 0.097 3.3E-06 42.0 9.3 128 2-164 85-212 (265)
93 2db0_A 253AA long hypothetical 94.8 0.16 5.3E-06 39.7 8.4 82 72-158 43-124 (253)
94 3l6x_A Catenin delta-1; cateni 94.5 0.071 2.4E-06 47.5 6.8 104 55-165 49-158 (584)
95 1xm9_A Plakophilin 1; armadill 94.4 0.062 2.1E-06 45.6 5.9 65 101-165 4-68 (457)
96 2iw3_A Elongation factor 3A; a 94.1 0.16 5.4E-06 47.9 8.5 98 51-159 130-230 (986)
97 1vsy_5 Proteasome activator BL 94.0 0.048 1.6E-06 51.4 4.7 89 75-164 858-960 (997)
98 3tt9_A Plakophilin-2; cell adh 93.8 0.071 2.4E-06 42.0 4.7 67 99-165 8-76 (233)
99 4ady_A RPN2, 26S proteasome re 93.4 0.23 7.8E-06 46.7 8.0 87 74-164 625-713 (963)
100 3l9t_A Putative uncharacterize 93.3 0.34 1.2E-05 38.5 7.9 87 72-165 115-202 (240)
101 3l6x_A Catenin delta-1; cateni 93.1 0.37 1.3E-05 42.8 8.6 105 54-165 355-471 (584)
102 3opb_A SWI5-dependent HO expre 92.9 0.35 1.2E-05 44.5 8.4 112 54-165 545-678 (778)
103 1vsy_4 Proteasome activator BL 92.6 1.8 6.1E-05 39.9 12.7 105 44-155 329-440 (799)
104 1lrv_A LRV, leucine-rich repea 92.3 0.11 3.7E-06 41.1 3.8 42 106-165 177-218 (244)
105 2of3_A ZYG-9; multifunctional 91.9 0.61 2.1E-05 37.5 7.7 90 75-164 60-155 (266)
106 4atg_A TAF6; transcription, TF 91.2 0.46 1.6E-05 36.5 6.1 78 47-128 80-162 (196)
107 4gmo_A Putative uncharacterize 90.5 0.22 7.5E-06 44.6 4.3 105 54-165 75-209 (684)
108 3b2a_A TON_1937, putative unch 88.3 1.1 3.7E-05 35.9 6.2 82 74-165 18-99 (265)
109 1t06_A Hypothetical protein; s 87.6 1.3 4.6E-05 34.4 6.4 67 98-164 107-174 (235)
110 3a6p_A Exportin-5; exportin-5, 87.2 1.1 3.9E-05 42.7 6.8 89 74-165 499-608 (1204)
111 1lsh_A Lipovitellin (LV-1N, LV 82.4 2.1 7.3E-05 40.3 6.2 80 78-165 412-502 (1056)
112 3grl_A General vesicular trans 80.0 2 6.9E-05 38.7 4.9 63 101-163 124-188 (651)
113 1vdy_A Hypothetical protein (R 78.2 6.1 0.00021 28.6 6.2 88 73-164 23-124 (140)
114 3oc3_A Helicase MOT1, MOT1; re 74.4 7.6 0.00026 35.1 6.8 92 53-163 333-429 (800)
115 3gs3_A Symplekin, LD45768P; he 73.1 24 0.00083 27.8 9.0 65 95-164 49-113 (257)
116 1w9c_A CRM1 protein, exportin 72.9 28 0.00097 28.5 9.6 113 52-164 67-190 (321)
117 4atg_A TAF6; transcription, TF 71.9 13 0.00046 28.2 7.0 79 83-163 27-112 (196)
118 2b6c_A Hypothetical protein EF 70.6 20 0.00069 27.1 7.9 58 100-164 125-182 (220)
119 3o2t_A Symplekin; heat repeat, 64.2 44 0.0015 28.0 9.2 65 95-164 59-123 (386)
120 3jxy_A Alkylpurine DNA glycosy 61.4 7.6 0.00026 29.8 3.8 58 100-164 132-189 (232)
121 1lsh_A Lipovitellin (LV-1N, LV 58.8 26 0.00089 32.9 7.6 70 95-164 391-463 (1056)
122 1upk_A MO25 protein; transfera 44.1 87 0.003 25.8 7.6 65 99-163 209-276 (341)
123 3u0r_A Apoptosis inhibitor 5; 43.8 70 0.0024 27.9 7.2 41 87-127 88-128 (507)
124 3ldz_A STAM-1, signal transduc 40.8 41 0.0014 23.7 4.6 64 99-163 42-107 (140)
125 1x5b_A Signal transducing adap 39.3 70 0.0024 23.1 5.8 63 98-163 51-118 (163)
126 1vdy_A Hypothetical protein (R 38.6 24 0.00081 25.4 3.0 27 138-164 46-72 (140)
127 3g2s_A C-terminal fragment of 36.7 71 0.0024 22.9 5.4 65 99-163 48-119 (149)
128 1t06_A Hypothetical protein; s 35.0 40 0.0014 25.8 4.1 55 73-128 121-180 (235)
129 1mhq_A ADP-ribosylation factor 33.8 90 0.0031 22.2 5.6 65 99-163 38-109 (148)
130 3o2t_A Symplekin; heat repeat, 31.9 2.2E+02 0.0076 23.6 9.7 68 95-162 96-175 (386)
131 1nig_A Hypothetical protein TA 30.6 66 0.0022 22.9 4.1 43 113-156 21-67 (152)
132 1juq_A ADP-ribosylation factor 30.0 74 0.0025 23.2 4.7 22 141-162 50-71 (171)
133 1ho8_A Vacuolar ATP synthase s 29.9 56 0.0019 28.2 4.5 24 142-165 448-471 (480)
134 2x6h_A GH13170P, VPS34, phosph 27.4 1.5E+02 0.005 26.8 6.9 65 75-146 88-152 (696)
135 1dvp_A HRS, hepatocyte growth 25.8 1.8E+02 0.006 21.8 6.3 66 98-163 41-108 (220)
136 3fga_B Serine/threonine-protei 24.1 3.2E+02 0.011 22.9 9.7 69 95-163 247-315 (403)
137 1juq_A ADP-ribosylation factor 23.7 1.4E+02 0.0048 21.7 5.2 66 98-163 49-121 (171)
138 3grl_A General vesicular trans 23.1 1.9E+02 0.0065 25.9 6.7 106 53-165 20-146 (651)
139 2npp_B PP2A, B subunit, serine 21.8 72 0.0025 27.3 3.6 66 95-165 322-394 (449)
140 1sz9_A PCF11 protein; RNA poly 21.7 1.5E+02 0.005 20.9 4.8 65 96-160 40-104 (144)
141 2wxf_A Phosphatidylinositol-4, 21.3 2.6E+02 0.0088 26.2 7.4 87 44-147 430-516 (940)
No 1
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.93 E-value=1.6e-25 Score=188.02 Aligned_cols=163 Identities=63% Similarity=1.030 Sum_probs=135.0
Q ss_pred CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHH
Q psy12576 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAG 82 (165)
Q Consensus 3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~ 82 (165)
+.+++++.+|+|||.++++.+.++.....+....+.++.+....+++++++.++|.+++.|.+.++|++||+|+++++|.
T Consensus 270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~ 349 (462)
T 1ibr_B 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG 349 (462)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHH
Confidence 46788999999999999987644322211111112222234445778888999999999999887777778899999999
Q ss_pred HHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576 83 VCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL 162 (165)
Q Consensus 83 ~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~ 162 (165)
.+|+.++..+|+.++|.++|++.+.+++++|+.|+||+++||++++|+.......+++.++|.+++.++|++|+||.+|+
T Consensus 350 ~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~ 429 (462)
T 1ibr_B 350 VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (462)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999985445568899999999999999999999999
Q ss_pred hcC
Q psy12576 163 QCL 165 (165)
Q Consensus 163 ~al 165 (165)
.+|
T Consensus 430 ~~l 432 (462)
T 1ibr_B 430 WTV 432 (462)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 2
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.89 E-value=2.4e-22 Score=181.14 Aligned_cols=164 Identities=63% Similarity=1.030 Sum_probs=138.4
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA 81 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a 81 (165)
+++++.++.+|+|||.++++.+.++........+.+..|.+....+.++.++.++|.+++.|.+.++|+|+++|+.+++|
T Consensus 269 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a 348 (876)
T 1qgr_A 269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHH
Confidence 35678899999999999998876544333333334444545555677777889999999999987777667789999999
Q ss_pred HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
..+|..++..+|+.+++.++|++.+.+.+++|+.|++|+.+||.+++|+.+.....+++.++|.+++.++|++++||.+|
T Consensus 349 ~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a 428 (876)
T 1qgr_A 349 GVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA 428 (876)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999988999999999999999999999999999999999998444456899999999999999999999999
Q ss_pred HhcC
Q psy12576 162 LQCL 165 (165)
Q Consensus 162 ~~al 165 (165)
+.+|
T Consensus 429 ~~~l 432 (876)
T 1qgr_A 429 AWTV 432 (876)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.87 E-value=2.8e-21 Score=173.81 Aligned_cols=160 Identities=33% Similarity=0.598 Sum_probs=133.2
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA 81 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a 81 (165)
++.++.++.+|++||.++++..........+ .|..|.+ +++++++.++.++|.+++.|.+.++|+|||+|+++++|
T Consensus 276 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a 351 (861)
T 2bpt_A 276 KSPNDKVASMTVEFWSTICEEEIDIAYELAQ---FPQSPLQ-SYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTTCSCC-CCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhhhhhh---ccCCchh-hHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 4567889999999999999876443322111 1333333 44567778889999999999988777677789999999
Q ss_pred HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
..+|+.++..+|+.+++.+++++.+.+++++|+.|++|+.+||++++|+.......+++.+++.+++.+.|+++.||.+|
T Consensus 352 ~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a 431 (861)
T 2bpt_A 352 GACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETT 431 (861)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997444567899999999999999999999999
Q ss_pred HhcC
Q psy12576 162 LQCL 165 (165)
Q Consensus 162 ~~al 165 (165)
+.+|
T Consensus 432 ~~~l 435 (861)
T 2bpt_A 432 AWCI 435 (861)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.86 E-value=1.9e-21 Score=177.38 Aligned_cols=144 Identities=19% Similarity=0.372 Sum_probs=122.0
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhc---------cC--CCC
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTK---------QE--ELD 70 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~---------~~--ed~ 70 (165)
+++++.++.+|+|||.++|+.. .++++++++++.++|.+++.|.. .| ||+
T Consensus 266 ~~~~~~vr~~a~e~l~~l~~~~-------------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 266 QDQDENVALEACEFWLTLAEQP-------------------ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHTTST-------------------THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred cCCcHHHHHHHHHHHHHHhcch-------------------hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 4677889999999999999742 12346677788899999999942 22 332
Q ss_pred Cc----CCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHH
Q psy12576 71 DE----DDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVV 146 (165)
Q Consensus 71 dd----dew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v 146 (165)
+| ++|+++++|+.+|+.++..+|+.++|.++|++.+.+++++|+.|++|+++||+|++|+.+.+. .+++.++|.+
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~~l~~~l~~l 405 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI-PYLPELIPHL 405 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG-GGHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHH
Confidence 22 469999999999999999999999999999999999999999999999999999999997544 6899999999
Q ss_pred HhhcCCCCHHHHHHHHhcC
Q psy12576 147 CEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 147 ~~~l~D~~p~VR~aA~~al 165 (165)
++.++|++++||.+|+.+|
T Consensus 406 ~~~l~d~~~~Vr~~a~~~l 424 (852)
T 4fdd_A 406 IQCLSDKKALVRSITCWTL 424 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHH
Confidence 9999999999999998764
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.71 E-value=5.3e-17 Score=149.85 Aligned_cols=151 Identities=14% Similarity=0.210 Sum_probs=111.9
Q ss_pred CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCC-------
Q psy12576 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDW------- 75 (165)
Q Consensus 3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew------- 75 (165)
..+++++..+++||.++++...+...+ +. ........++.++.|++.++..|.. ++|+|.++|
T Consensus 364 ~~~~~v~~~~l~fw~~l~~~~~~~~~~-------~~--~~~~~~~~~~~~~~ll~~l~~~~~~-p~~~~~~~~d~~e~~~ 433 (971)
T 2x1g_F 364 PVEESCSTMALAFWYMLQDEVFAMSND-------EQ--KHKCWEYIKPLYAHLTRILVRKSEQ-PDEKSLAKWSSDDLEC 433 (971)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHTSC-CCTTTTSCSCHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHHHHhcccc-------cc--hHHHHHHHHHHHHHHHHHHHHHhcC-CCcccccccCHhHHHH
Confidence 357889999999999999854332110 00 0123346777888999999999964 333222233
Q ss_pred --chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhccc-----CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHh
Q psy12576 76 --NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH-----ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCE 148 (165)
Q Consensus 76 --~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~-----~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~ 148 (165)
+.+++++.+|..++..+|+.+++.+++++.+++++ ++|+.|+||+++||+|+|||.+... ..++.+++ ++.
T Consensus 434 f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~-~l~ 511 (971)
T 2x1g_F 434 FRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMR-VLA 511 (971)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHH-HHH
Confidence 45688999999999999999999999999999876 7999999999999999999998543 57899999 555
Q ss_pred hcC--CCCHHHHHHHHhcC
Q psy12576 149 ATQ--SPDTQIRVAALQCL 165 (165)
Q Consensus 149 ~l~--D~~p~VR~aA~~al 165 (165)
.+. |++|+||.+|+.+|
T Consensus 512 ~l~~~d~~~~vr~~a~~~l 530 (971)
T 2x1g_F 512 EIPYEKLNVKLLGTALETM 530 (971)
T ss_dssp HSCTTTSCHHHHHHHHHHH
T ss_pred hcCccccCHHHHHHHHHHH
Confidence 555 78999999998764
No 6
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.70 E-value=2.7e-17 Score=152.43 Aligned_cols=143 Identities=16% Similarity=0.195 Sum_probs=102.7
Q ss_pred chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHH--HHHhHHH-HHHHHHhhccCCC------C----
Q psy12576 4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAK--GALQYLV-PILTQKLTKQEEL------D---- 70 (165)
Q Consensus 4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~l~-p~ll~~l~~~~ed------~---- 70 (165)
.++.++.+|+|||.++++.+... .+++ +.++.|+ ++++..|+..++| |
T Consensus 304 ~~~~~~~~al~fl~~~~~~~~~~-------------------~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~ 364 (960)
T 1wa5_C 304 KYDILVSKSLSFLTAVTRIPKYF-------------------EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEY 364 (960)
T ss_dssp TSHHHHHHHHHHHHHHHTSHHHH-------------------GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHH
T ss_pred CcHHHHHHHHHHHHHHhCcHhHH-------------------HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHH
Confidence 56789999999999999753210 1111 3445677 6777777642221 1
Q ss_pred ------CcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc------cCchHHHHHHHHHHHHhhcC---Ccchhc
Q psy12576 71 ------DEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE------HADWRHRDAALMSFGAILVR---PSFIIT 135 (165)
Q Consensus 71 ------dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~------~~dw~~R~Aa~~Alg~i~EG---~~~~~~ 135 (165)
++|.|+++++|+.+|+.++..+|+.++|++++++.++++ +++|+.|+||+++||+|++| |.....
T Consensus 365 i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~ 444 (960)
T 1wa5_C 365 IRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVS 444 (960)
T ss_dssp HHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCC
T ss_pred HHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcc
Confidence 234579999999999999999998899999999999998 78999999999999999986 332111
Q ss_pred h--H--hHHHH-HHHHHhhcCCC---CHHHHHHHHhcC
Q psy12576 136 I--S--ERNFI-MEVVCEATQSP---DTQIRVAALQCL 165 (165)
Q Consensus 136 ~--~--~l~~i-l~~v~~~l~D~---~p~VR~aA~~al 165 (165)
. . .+..+ ...+.+.++|+ +|.||.+||.+|
T Consensus 445 ~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~l 482 (960)
T 1wa5_C 445 STNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYI 482 (960)
T ss_dssp CBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHH
Confidence 0 0 34443 45678888888 999999999764
No 7
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.62 E-value=8.8e-16 Score=143.57 Aligned_cols=148 Identities=13% Similarity=0.158 Sum_probs=114.2
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCC-----------
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELD----------- 70 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~----------- 70 (165)
+.++++++..++|||.+++++-.. .+. .+.+.+.+++.|+++++..|.+.+|++
T Consensus 354 ~~~d~~v~~~~lefw~~l~~~l~~-------------~~~--~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r 418 (1049)
T 3m1i_C 354 KIEERELFKTTLDYWHNLVADLFY-------------EPL--KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVR 418 (1049)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHH-------------STT--CGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEE
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHh-------------chh--HHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchH
Confidence 346788999999999999984211 011 122455677889999999998643211
Q ss_pred ----CcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc--cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHH
Q psy12576 71 ----DEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE--HADWRHRDAALMSFGAILVRPSFIITISERNFIME 144 (165)
Q Consensus 71 ----dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~--~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~ 144 (165)
|+|+|+.+++++.+|+.++...|+.+++.+++++.++++ +.+|+.|+|+++|+|+|++++....-...++.+++
T Consensus 419 ~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~ 498 (1049)
T 3m1i_C 419 EFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK 498 (1049)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence 223578899999999999988888899999999999886 47999999999999999999887533345889999
Q ss_pred HHHhhcC-----CCCHHHHHHHHhc
Q psy12576 145 VVCEATQ-----SPDTQIRVAALQC 164 (165)
Q Consensus 145 ~v~~~l~-----D~~p~VR~aA~~a 164 (165)
.+..... ||+|+||..++.+
T Consensus 499 ~l~~l~~~~~~~~~~~~v~~~~~~~ 523 (1049)
T 3m1i_C 499 DLLDLTVKKRGKDNKAVVASDIMYV 523 (1049)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchHHHHHHHHHH
Confidence 8876442 6899999877654
No 8
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.58 E-value=2.1e-15 Score=138.67 Aligned_cols=150 Identities=12% Similarity=0.168 Sum_probs=114.7
Q ss_pred chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCC----Cc---CCC-
Q psy12576 4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELD----DE---DDW- 75 (165)
Q Consensus 4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~----dd---dew- 75 (165)
.+++++..++|||.++++....+..... .......++.++.|+++++..|.+.+|++ |+ ++|
T Consensus 352 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~----------~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~ 421 (963)
T 2x19_B 352 VNETTSSLTLTFWYTLQDDILSFEAEKQ----------AVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421 (963)
T ss_dssp TTCGGGGGGHHHHHHHHHHHTTSCHHHH----------HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHH
Confidence 4677899999999999985432210000 11233566788889999999997543321 11 235
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhc----ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANI----EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l----~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
+.+++++.+|+.++..+|+.+++.+++++.+.+ .+++|+.|+|++++||+|++|+.+.. ...++.+++. +..+.
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-~~~l~~l~~~-l~~l~ 499 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-SDVVPGLIGL-IPRIS 499 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-CSHHHHHHHH-GGGSC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-hHHHHHHHHH-HHhCC
Confidence 457889999999999999889999999999988 78899999999999999999998743 3478889995 45677
Q ss_pred CCCHHHHHHHHhcC
Q psy12576 152 SPDTQIRVAALQCL 165 (165)
Q Consensus 152 D~~p~VR~aA~~al 165 (165)
+++|+||.+++.+|
T Consensus 500 ~~~~~vr~~~~~~l 513 (963)
T 2x19_B 500 ISNVQLADTVMFTI 513 (963)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 78999999998763
No 9
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.53 E-value=1.6e-14 Score=135.94 Aligned_cols=147 Identities=12% Similarity=0.169 Sum_probs=115.8
Q ss_pred CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCC----CCcCCC---
Q psy12576 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEEL----DDEDDW--- 75 (165)
Q Consensus 3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed----~dddew--- 75 (165)
.++.+++..++|||.++++.-.. .|.+ +...+.++.+|+++++..|.+.+|+ +|+++|
T Consensus 355 ~~d~ei~~~tl~FW~~L~~~l~~-------------e~~~--~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e 419 (1023)
T 4hat_C 355 IEERELFKTTLDYWHNLVADLFY-------------EPLK--KHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE 419 (1023)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTT-------------STTT--GGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEEC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHh-------------chHH--HHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHH
Confidence 46778999999999999984111 1111 2345677788999999999987642 233344
Q ss_pred --------chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhccc--CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHH
Q psy12576 76 --------NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH--ADWRHRDAALMSFGAILVRPSFIITISERNFIMEV 145 (165)
Q Consensus 76 --------~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~--~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~ 145 (165)
+..+....+|..++...|+.+++.+++.+.+.+.+ .+|+.|+|+++|||+|++|+.+......++.+++.
T Consensus 420 ~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~ 499 (1023)
T 4hat_C 420 FVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499 (1023)
T ss_dssp SSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 45566668999999999988999999999888764 68999999999999999999986556789999999
Q ss_pred HHhhcC-----CCCHHHHHHHHhc
Q psy12576 146 VCEATQ-----SPDTQIRVAALQC 164 (165)
Q Consensus 146 v~~~l~-----D~~p~VR~aA~~a 164 (165)
+++.+. |+.++||..++..
T Consensus 500 Ll~l~~~~~~~d~k~~v~~t~~~~ 523 (1023)
T 4hat_C 500 LLDLCVKKRGKDNKAVVASDIMYV 523 (1023)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHhhhccccCcchHHHHHHHHHH
Confidence 998876 6889999877653
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.31 E-value=4.5e-12 Score=118.80 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=108.7
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCC--C----cC--
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELD--D----ED-- 73 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~--d----dd-- 73 (165)
.+++++++..+++||.++.+..... + .+.+ .+...+..++.|++.++..|.+.++++ + ||
T Consensus 342 ~~~~deVs~~t~~Fw~~~l~~~~~~--~-------~~~~---~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~ 409 (980)
T 3ibv_A 342 SDDYDETSTAVFPFLSDLLVSLRKE--S-------SSKE---LSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEA 409 (980)
T ss_dssp TCSSHHHHHTTHHHHHHHHHHHHHH--T-------TSCC---CCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhc--c-------cccc---ccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHH
Confidence 4578899999999999999753221 0 0011 113456677889999999999754321 1 11
Q ss_pred CC-chhhHHHHHHHHHHHHcCCcchh----hHHHHHhhhc---ccCchHHHHHHHHHHHHhhcCCcchhc-----hHhHH
Q psy12576 74 DW-NPCKAAGVCLMLLSSCCEEDMVP----HILPFVNANI---EHADWRHRDAALMSFGAILVRPSFIIT-----ISERN 140 (165)
Q Consensus 74 ew-~~~~~a~~~Ld~la~~~~~~i~~----~vl~~i~~~l---~~~dw~~R~Aa~~Alg~i~EG~~~~~~-----~~~l~ 140 (165)
+. ..++..+..+|.++...|+.+++ .+.+.+.+.+ .+.+|+.++||+++||+++|||..... ...++
T Consensus 410 ~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp 489 (980)
T 3ibv_A 410 EFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPT 489 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBC
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhH
Confidence 12 34555567788888877787888 7777777777 367899999999999999999986322 13577
Q ss_pred HHHHHHHhhcC-----CCCHHHHHHHHhc
Q psy12576 141 FIMEVVCEATQ-----SPDTQIRVAALQC 164 (165)
Q Consensus 141 ~il~~v~~~l~-----D~~p~VR~aA~~a 164 (165)
.+++++.+.++ ++||+||++++..
T Consensus 490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~ 518 (980)
T 3ibv_A 490 VLSQILALVTTSQVCRHPHPLVQLLYMEI 518 (980)
T ss_dssp HHHHHHHHHHHSSTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 88888887765 9999999999865
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.20 E-value=7.6e-11 Score=101.34 Aligned_cols=104 Identities=12% Similarity=0.152 Sum_probs=88.2
Q ss_pred HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576 52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~ 130 (165)
.+.++|.++.++.+ ++|+.+++|..+|..++..+++ ...+.++|++...+.+++|+.|++++.+||.++++.
T Consensus 201 ~~~l~~~l~~~~~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~ 273 (588)
T 1b3u_A 201 KSEIIPMFSNLASD-------EQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV 273 (588)
T ss_dssp HHTHHHHHHHHHTC-------SCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 45678888777642 2478999999999999999994 567889999999999999999999999999999877
Q ss_pred cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.. ...+.+++.+++.++|+++.||.+|+.+|
T Consensus 274 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 305 (588)
T 1b3u_A 274 GPE---ITKTDLVPAFQNLMKDCEAEVRAAASHKV 305 (588)
T ss_dssp CHH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred Ccc---cchhHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 653 24678899999999999999999998764
No 12
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.14 E-value=7.7e-10 Score=86.80 Aligned_cols=107 Identities=11% Similarity=0.134 Sum_probs=88.4
Q ss_pred HHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 49 KGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 49 ~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
.++.+.++|.+++.+.+.. ...+.+|..+|+.+....+ ++.++|.+...+++.+|+.|..++-.++.++.
T Consensus 93 ~~~~~~ilp~ll~~l~d~~-------~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKK-------PNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCC-------HHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 4456679999999887432 4678899999999988776 56677777788899999999999999999876
Q ss_pred CCcch-hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 129 RPSFI-ITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 129 G~~~~-~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
-.... ....+++.++|.+.+.+.|+++.||.+|..|+
T Consensus 163 ~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 163 RTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 55432 35568999999999999999999999998874
No 13
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.4e-09 Score=85.66 Aligned_cols=109 Identities=10% Similarity=0.084 Sum_probs=89.9
Q ss_pred HHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc----chhhHHHHHhhhcccCchHHHHHHHHHHHH
Q psy12576 50 GALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED----MVPHILPFVNANIEHADWRHRDAALMSFGA 125 (165)
Q Consensus 50 ~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~----i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~ 125 (165)
++...++|.+++.+.+.. -++..++..+|+.+...++.. -++.+++.+...+++.+|+.|.+++.+++.
T Consensus 100 ~y~~~llp~ll~~l~dkk-------~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKK-------PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp HHHHHHHHHHHHGGGCCC-------HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 344568999999887432 367899999999999998631 155788888899999999999999999999
Q ss_pred hhcCCcc--hhchHhH-HHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 126 ILVRPSF--IITISER-NFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 126 i~EG~~~--~~~~~~l-~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+++-... ..+..++ +.++|.+.+.+.|+++.||.+|..||
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9975553 3344689 99999999999999999999999874
No 14
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.01 E-value=2.6e-09 Score=91.73 Aligned_cols=157 Identities=13% Similarity=0.051 Sum_probs=108.4
Q ss_pred CCchhHHHHHHHHHHHHHhHhhh-----hhhhh-hHHhhhcCCCCCccc--H---HHHH-----HHHhHHHHHHHHHhhc
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEV-----DLAIE-DSEAADFGRPPTRTS--R---FYAK-----GALQYLVPILTQKLTK 65 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~-----~~~~~-~~~~~~~g~~~~~~~--~---~~~~-----~~~~~l~p~ll~~l~~ 65 (165)
++++..|+..|++.+..+++.-. ....+ .....+...+..|.. . .+.. ...+.++|.+.+.+.
T Consensus 174 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~- 252 (588)
T 1b3u_A 174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAE- 252 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHT-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc-
Confidence 46788899999999999986311 11111 111222111111110 0 0111 122446666666553
Q ss_pred cCCCCCcCCCchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc-hHhHHHHH
Q psy12576 66 QEELDDEDDWNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT-ISERNFIM 143 (165)
Q Consensus 66 ~~ed~dddew~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~-~~~l~~il 143 (165)
|.+|..++++..+|..++..+|. ...+.++|.+.+.+.+++|..|.+|..+||.++++++.... ..+++.++
T Consensus 253 ------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 326 (588)
T 1b3u_A 253 ------DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 326 (588)
T ss_dssp ------CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHH
T ss_pred ------CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHH
Confidence 13599999999999999999884 45577888888899999999999999999999998876422 14678889
Q ss_pred HHHHhhcCCCCHHHHHHHHhcC
Q psy12576 144 EVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 144 ~~v~~~l~D~~p~VR~aA~~al 165 (165)
|.+.+.++|++++||.+|+.+|
T Consensus 327 p~l~~~l~d~~~~vR~~a~~~l 348 (588)
T 1b3u_A 327 PCIKELVSDANQHVKSALASVI 348 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTG
T ss_pred HHHHHHhcCCCHHHHHHHHHHH
Confidence 9988889999999999988764
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.85 E-value=4e-09 Score=99.42 Aligned_cols=67 Identities=10% Similarity=0.223 Sum_probs=55.8
Q ss_pred hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH--HHHHHHHhc
Q psy12576 97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT--QIRVAALQC 164 (165)
Q Consensus 97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p--~VR~aA~~a 164 (165)
+|.+++.+.+.+.+++|+.|.+++.+||.+++++... ...+++.+++.+++.+.|+++ .||.+|+.+
T Consensus 432 l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~ 500 (1230)
T 1u6g_C 432 VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA-LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSC 500 (1230)
T ss_dssp TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT-TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh-hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 3455566666689999999999999999999987654 446899999999999999885 899888754
No 16
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=7.3e-09 Score=81.16 Aligned_cols=103 Identities=10% Similarity=0.003 Sum_probs=85.8
Q ss_pred HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCC
Q psy12576 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIE-HADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~ 130 (165)
|.|.+++.+.+ .+|..++.|..+|..+....++ .-+..+++.+...+. +++...|.+|+.++|.++.+.
T Consensus 16 l~~~l~~~l~s-------~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 16 MPKDFYDKLEE-------KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp SCTTHHHHHTC-------SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhhcc-------CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 44456666643 2499999999999999887553 234677888888995 999999999999999999988
Q ss_pred cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.. ..++.+.++|.+++.+.|++++||.+|..||
T Consensus 89 ~~~-~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL 122 (242)
T 2qk2_A 89 AKR-FSNYASACVPSLLEKFKEKKPNVVTALREAI 122 (242)
T ss_dssp GGG-GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred hhh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 774 4679999999999999999999999998874
No 17
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.76 E-value=9.4e-09 Score=93.57 Aligned_cols=107 Identities=12% Similarity=0.182 Sum_probs=88.7
Q ss_pred HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
++.++|.+.+.+.. .+|..+.+|..+|..++...++ ..++.++|.+.+.+.+++|+.|.+++.++|.+++
T Consensus 357 ~~~l~~~l~~~l~~-------~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 357 LPHILPLLKELLFH-------HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHHHHHHHTC-------SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 35566666666542 2499999999999999887764 3568889999999999999999999999999998
Q ss_pred CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.........+++.+++.+++.+.|++++||.+|+.+|
T Consensus 430 ~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL 466 (852)
T 4fdd_A 430 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAF 466 (852)
T ss_dssp HHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7665434568999999999999999999999998764
No 18
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.64 E-value=2.1e-07 Score=83.41 Aligned_cols=111 Identities=7% Similarity=0.079 Sum_probs=89.1
Q ss_pred HHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-----cchhhHHHHHhhhcccCchHHHHHHHH
Q psy12576 47 YAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-----DMVPHILPFVNANIEHADWRHRDAALM 121 (165)
Q Consensus 47 ~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-----~i~~~vl~~i~~~l~~~dw~~R~Aa~~ 121 (165)
.+.+.++.++|.++..+.+ ..+..+.++..+|..++..++. ..++.++|.+.+.+.++ ++.|.+|..
T Consensus 404 ~~~~~l~~il~~l~~~l~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~ 475 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMND-------QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSW 475 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGC-------SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence 3455677788888887752 1367788888999999988753 45788888888888776 999999999
Q ss_pred HHHHhhcCCcc---hhchHhHHHHHHHHHhhcC--CCCHHHHHHHHhcC
Q psy12576 122 SFGAILVRPSF---IITISERNFIMEVVCEATQ--SPDTQIRVAALQCL 165 (165)
Q Consensus 122 Alg~i~EG~~~---~~~~~~l~~il~~v~~~l~--D~~p~VR~aA~~al 165 (165)
+|+.+++++.+ ....++++.+++.+++.+. |+++.||.+|+.+|
T Consensus 476 al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp HHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred HHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 99999998862 3455789999999999997 56689999988763
No 19
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.58 E-value=1.5e-07 Score=84.51 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=84.7
Q ss_pred HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-C---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-E---DMVPHILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
++.++|.+.+.+.+ .+|..+.+|..+|..++..++ + ..++.++|.+...+.++++..|.+|+.++|.++
T Consensus 364 ~~~~l~~l~~~l~~-------~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~ 436 (876)
T 1qgr_A 364 VPHVLPFIKEHIKN-------PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (876)
T ss_dssp HHHHHHHHHHHTTC-------SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-------CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 44555655555542 259999999999998887766 3 245678888888999999999999999999999
Q ss_pred cCCcchh-chHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 128 VRPSFII-TISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 128 EG~~~~~-~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.+.... ...+++.+++.+++.+.|+ ++||.+|+.+|
T Consensus 437 ~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al 474 (876)
T 1qgr_A 437 ELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAF 474 (876)
T ss_dssp HHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHH
T ss_pred HhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 9877643 4568999999999999996 99999988763
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.57 E-value=1.7e-07 Score=78.07 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
.++|.|+++|.. .+|.....|..+|..++...++ .++ ..++|.+.+.+.+++|..|++|+.+||.++.|
T Consensus 234 ~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~ 306 (450)
T 2jdq_A 234 GVCRRLVELLMH-------NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG 306 (450)
T ss_dssp TTHHHHHHHTTC-------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHCC-------CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 567888887752 2377888888888888765442 122 24777777888899999999999999999998
Q ss_pred CcchhchHhH-HHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISER-NFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l-~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+...... .+ ..++|.+++.+.|+++.||.+|+.+|
T Consensus 307 ~~~~~~~-~~~~~~l~~L~~~l~~~~~~v~~~a~~~L 342 (450)
T 2jdq_A 307 NRAQIQT-VIDANIFPALISILQTAEFRTRKEAAWAI 342 (450)
T ss_dssp CHHHHHH-HHHTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHH-HHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8764322 23 47899999999999999999998764
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.57 E-value=1.5e-06 Score=72.18 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=75.2
Q ss_pred chhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccC--chHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC
Q psy12576 76 NPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHA--DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS 152 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~--dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D 152 (165)
.. +.++.+|..++...+ +.-.|.++|++.+.++++ ++..|++|+.+|+.+++.........+.+.+++.+.+.++|
T Consensus 105 ~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~ 183 (462)
T 1ibr_B 105 RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK 183 (462)
T ss_dssp SS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHST
T ss_pred hh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCC
Confidence 45 778899999998854 345788999999999998 99999999999999998653334567899999999999998
Q ss_pred C--CHHHHHHHHhcC
Q psy12576 153 P--DTQIRVAALQCL 165 (165)
Q Consensus 153 ~--~p~VR~aA~~al 165 (165)
+ ++.||.+|+.|+
T Consensus 184 ~~~~~~vr~~a~~~l 198 (462)
T 1ibr_B 184 EEPSNNVKLAATNAL 198 (462)
T ss_dssp TCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 8 899999998764
No 22
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.55 E-value=5.2e-07 Score=85.08 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=86.7
Q ss_pred HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---------chhhHHHHHhhhcc-cCchHHHHHHH
Q psy12576 51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---------MVPHILPFVNANIE-HADWRHRDAAL 120 (165)
Q Consensus 51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---------i~~~vl~~i~~~l~-~~dw~~R~Aa~ 120 (165)
.++.+++.+++.+.+. +...+.+|..+|..++..++.. ..+.++|++.+.+. +++|..|++|+
T Consensus 83 ~~~~i~~~Ll~~l~d~-------~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al 155 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSD-------KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEAL 155 (1230)
T ss_dssp HHHHHHHHHHHHTTCS-------SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 3456777777776521 2356888999999999999854 57889999999998 59999999999
Q ss_pred HHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 121 ~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.+|+.+++..++. ...+++.+++.+++.+.|+++.||.+|+.||
T Consensus 156 ~~l~~~~~~~~~~-l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al 199 (1230)
T 1u6g_C 156 DIMADMLSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIAL 199 (1230)
T ss_dssp HHHHHHHHHTCSS-CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 9999999755443 3458999999999999999999999998764
No 23
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.6e-06 Score=69.32 Aligned_cols=138 Identities=12% Similarity=0.040 Sum_probs=90.9
Q ss_pred chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHh-hccCCCCCcCCCchhhHHH
Q psy12576 4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKL-TKQEELDDEDDWNPCKAAG 82 (165)
Q Consensus 4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l-~~~~ed~dddew~~~~~a~ 82 (165)
.+-.+...|+++...+++. -.+......+.......++|.|++.. .+.. -.....|.
T Consensus 67 sN~~v~~~al~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k-------~~~~~~a~ 124 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDA---------------FASSSLKNAHNITLISTWTPLLVEKGLTSSR-------ATTKTQSM 124 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTT---------------CC---CCHHHHHHHHHHHHHHHHHHTSSCCC-------HHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH---------------hhhhhcccchhHHHHHHHHHHHHHHHhcCcc-------HHHHHHHH
Confidence 3444556677777766652 01111122344455567788888763 3211 13344566
Q ss_pred HHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc--CCcchhchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576 83 VCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILV--RPSFIITISERNFIMEVVCEATQSPDTQIRVA 160 (165)
Q Consensus 83 ~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E--G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~a 160 (165)
.+|..+..... ....+++.+...+.+-+|+.|.+++..|+.+++ |+.....+..++.+++.+.+.+.|+++.||.+
T Consensus 125 ~~l~~~~~~~~--~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~a 202 (278)
T 4ffb_C 125 SCILSLCGLDT--SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQ 202 (278)
T ss_dssp HHHHHHHHTSS--SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHH
Confidence 66666655443 245567788889999999999999999998885 55443334468889999999999999999999
Q ss_pred HHhcC
Q psy12576 161 ALQCL 165 (165)
Q Consensus 161 A~~al 165 (165)
|..++
T Consensus 203 A~~l~ 207 (278)
T 4ffb_C 203 TMNLI 207 (278)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 24
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.50 E-value=4.9e-07 Score=85.67 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=103.9
Q ss_pred CchhHHHHHHHHHHHHHhHhhhhhhhhhH-H--hhhcCC-CC-CcccHHHHHHHHhHHHHHHHHHhhccCCC----CCcC
Q psy12576 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDS-E--AADFGR-PP-TRTSRFYAKGALQYLVPILTQKLTKQEEL----DDED 73 (165)
Q Consensus 3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~-~--~~~~g~-~~-~~~~~~~~~~~~~~l~p~ll~~l~~~~ed----~ddd 73 (165)
.++.+++.-+++||..+.+.=..-. +.. + ....|. .+ ....++..+..+..|..+++..|.+-+|. +|+.
T Consensus 362 ~~d~ei~kitf~fW~~L~~~L~~e~-~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~g 440 (1073)
T 3gjx_A 362 VEETEIFKICLEYWNHLAAELYRES-PFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQG 440 (1073)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHC-CSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhc-cccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccc
Confidence 4678899999999999997522110 000 0 000000 00 01123445567778888888888865431 2221
Q ss_pred C-----------CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhccc--CchHHHHHHHHHHHHhhcCCcc-hhchHhH
Q psy12576 74 D-----------WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH--ADWRHRDAALMSFGAILVRPSF-IITISER 139 (165)
Q Consensus 74 e-----------w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~--~dw~~R~Aa~~Alg~i~EG~~~-~~~~~~l 139 (165)
| -+.++.-..||..++...++.++..+++.+.+.+.+ .+|+.++|+++|+|+|+ |+-. ..-+..+
T Consensus 441 e~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa-g~~~~~~E~~~L 519 (1073)
T 3gjx_A 441 EVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS-GAMHEEDEKRFL 519 (1073)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT-TSSCHHHHHHHH
T ss_pred hHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH-CcCCcccccchH
Confidence 2 135677788999988666678888889988877654 46999999999999999 5554 3344579
Q ss_pred HHHHHHHHhhcCCC-----CHHHHHHHH
Q psy12576 140 NFIMEVVCEATQSP-----DTQIRVAAL 162 (165)
Q Consensus 140 ~~il~~v~~~l~D~-----~p~VR~aA~ 162 (165)
+.+++.+++....+ .++||...+
T Consensus 520 p~vi~~Ll~L~e~~~~kd~k~~vas~i~ 547 (1073)
T 3gjx_A 520 VTVIKDLLGLCEQKRGKDNKAIIASNIM 547 (1073)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccchhHHHHHHHH
Confidence 99999999887555 466666554
No 25
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.50 E-value=7.5e-07 Score=82.49 Aligned_cols=111 Identities=7% Similarity=-0.010 Sum_probs=80.0
Q ss_pred HHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHc-----C-C------cchhhHHHHHhhhcccC---chH
Q psy12576 50 GALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCC-----E-E------DMVPHILPFVNANIEHA---DWR 114 (165)
Q Consensus 50 ~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~-----~-~------~i~~~vl~~i~~~l~~~---dw~ 114 (165)
..++.+++.+.+++.+...+. ..+|....+|..++..+|... | . .+.+.+..++.+.++++ .+.
T Consensus 395 ~v~~~~l~~i~~~l~~~~~~~-~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~ 473 (960)
T 1wa5_C 395 LVTNIFLAHMKGFVDQYMSDP-SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHII 473 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHH
T ss_pred hHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCce
Confidence 345556666666665322221 235999999999999998542 2 1 33344444555566776 899
Q ss_pred HHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 115 HRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 115 ~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.|.+|++++|..++-.. ..++..+++.+++++.|++++||.+|+.||
T Consensus 474 vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al 520 (960)
T 1wa5_C 474 LRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQTDEYVVYTYAAITI 520 (960)
T ss_dssp HHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 99999999999998642 357999999999999999999999999874
No 26
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.48 E-value=2.1e-06 Score=65.15 Aligned_cols=133 Identities=21% Similarity=0.142 Sum_probs=62.8
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHH-----hHHHHHHHHHhhccCCCCCcCCCc
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGAL-----QYLVPILTQKLTKQEELDDEDDWN 76 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~l~p~ll~~l~~~~ed~dddew~ 76 (165)
++++..+...|++....+.+.+ ......+.+... ....+..+-.++ +..+|.|++.|.+ +++.
T Consensus 29 ~~~~~~vR~~A~~~L~~~~~~~--~~~~L~~~l~~~---~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~-------~~~~ 96 (211)
T 3ltm_A 29 QDDSYYVRRAAAYALGKIGDER--AVEPLIKALKDE---DAWVRRAAADALGQIGDERAVEPLIKALKD-------EDGW 96 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGG--GHHHHHHHTTCS---CHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-------SSHH
T ss_pred cCCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHcCC---CHHHHHHHHHHHHhhCCHHHHHHHHHHHcC-------CCHH
Confidence 4566777777777777766521 111122222221 111111111111 3455666666532 1234
Q ss_pred hhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576 77 PCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQ 156 (165)
Q Consensus 77 ~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~ 156 (165)
.+..|..+|..+ ++ +..++.+.+.+.+++|..|.+|+.+||.+.. +..++.+.+.+.|+++.
T Consensus 97 vr~~a~~aL~~~----~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~ 158 (211)
T 3ltm_A 97 VRQSAAVALGQI----GD---ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGW 158 (211)
T ss_dssp HHHHHHHHHHHH----CC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHh----Cc---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHcCCCHH
Confidence 455554444433 21 2233444445566677777777777766642 11244444555555555
Q ss_pred HHHHHHhc
Q psy12576 157 IRVAALQC 164 (165)
Q Consensus 157 VR~aA~~a 164 (165)
||.+|..+
T Consensus 159 vr~~a~~a 166 (211)
T 3ltm_A 159 VRQSAADA 166 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 27
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.47 E-value=2.3e-06 Score=64.39 Aligned_cols=133 Identities=21% Similarity=0.141 Sum_probs=66.1
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHH-----hHHHHHHHHHhhccCCCCCcCCCc
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGAL-----QYLVPILTQKLTKQEELDDEDDWN 76 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~l~p~ll~~l~~~~ed~dddew~ 76 (165)
++++..+...|++....+...+ ......+.+..+. ...+..+-.++ +..+|.|++.|.+ +++.
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~~~--~~~~L~~~l~~~~---~~vr~~a~~~L~~~~~~~~~~~L~~~l~d-------~~~~ 91 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGDER--AVEPLIKALKDED---AWVRRAAADALGQIGDERAVEPLIKALKD-------EDGW 91 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCCGG--GHHHHHHHTTCSS---HHHHHHHHHHHHHHCCGGGHHHHHHHTTC-------SSHH
T ss_pred cCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHcCCC---HHHHHHHHHHHHhhCCHHHHHHHHHHHcC-------CCHH
Confidence 5667778888888777776522 1122222332221 11111111111 3456666666642 1244
Q ss_pred hhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576 77 PCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQ 156 (165)
Q Consensus 77 ~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~ 156 (165)
.+..|..+|..+ ++ +..++.+.+.+.+++|..|.+|+.+||.+.. +..++.+.+.+.|+++.
T Consensus 92 vr~~a~~aL~~~----~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~ 153 (201)
T 3ltj_A 92 VRQSAAVALGQI----GD---ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGW 153 (201)
T ss_dssp HHHHHHHHHHHH----CC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHh----Cc---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHH
Confidence 555555554433 21 1233334445566777777777777776642 12344455555566666
Q ss_pred HHHHHHhc
Q psy12576 157 IRVAALQC 164 (165)
Q Consensus 157 VR~aA~~a 164 (165)
||.+|+.+
T Consensus 154 vr~~A~~a 161 (201)
T 3ltj_A 154 VRQSAADA 161 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 28
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.47 E-value=1.8e-06 Score=70.11 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc--CCc
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILV--RPS 131 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E--G~~ 131 (165)
.++|.|++.+-+.. -..+..+...|..+...+|. ..+++++-+.+.|-+||.|...+-.++++.+ |..
T Consensus 132 ~~lP~LveKlGd~k-------~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 132 AFVPYLLLKTGEAK-------DNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHGGGCSS-------HHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHhCCCh-------HHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 47888888876433 26788888889888877662 2255566668899999999999999999986 655
Q ss_pred chhchHhHHHHH---HHHHhhcCCCCHHHHHHHHhcC
Q psy12576 132 FIITISERNFIM---EVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 132 ~~~~~~~l~~il---~~v~~~l~D~~p~VR~aA~~al 165 (165)
. ...+ |.|++.+.|++..||.||++|+
T Consensus 202 ~-------~~~l~~~~~ia~ll~D~d~~VR~aAl~~l 231 (266)
T 2of3_A 202 P-------LKSLSVEKTVAPFVGDKDVNVRNAAINVL 231 (266)
T ss_dssp G-------GGGGCHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred c-------cccccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 1246 9999999999999999999885
No 29
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.46 E-value=1.2e-06 Score=66.13 Aligned_cols=137 Identities=17% Similarity=0.095 Sum_probs=95.3
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA 81 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a 81 (165)
++++.++...|......++....+. ...++. ...+|.|+++|... +......|
T Consensus 22 ~s~~~~v~~~a~~~L~~l~~~~~~~-----------------~~~i~~---~g~i~~L~~lL~~~-------~~~v~~~a 74 (210)
T 4db6_A 22 NSPDQQELQSALRKLSQIASGGNEQ-----------------IQAVID---AGALPALVQLLSSP-------NEQILQEA 74 (210)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSCHHH-----------------HHHHHH---TTHHHHHHHHTTCS-------CHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHH-----------------HHHHHH---cCCHHHHHHHHcCC-------CHHHHHHH
Confidence 5778888888988888888421110 011222 25788888888642 24567777
Q ss_pred HHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576 82 GVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI 157 (165)
Q Consensus 82 ~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~V 157 (165)
..+|..|+..-++ .++ .-.+|.+...+.++++..|+.|+.+|+.++.+.......-.-..+++.+++.+.++++.|
T Consensus 75 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 154 (210)
T 4db6_A 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 154 (210)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence 7777777643322 122 235677777888999999999999999999876653222223568999999999999999
Q ss_pred HHHHHhcC
Q psy12576 158 RVAALQCL 165 (165)
Q Consensus 158 R~aA~~al 165 (165)
|..|+.+|
T Consensus 155 ~~~a~~aL 162 (210)
T 4db6_A 155 LQEALWAL 162 (210)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 30
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.43 E-value=3e-07 Score=73.32 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=75.5
Q ss_pred CCchhhHHHHHHHH-HHHHcCCcc-----hhhHHHHHhhhc-ccCchHHHHHHHHHHHHhhcCCc-chhchHhHHHHHHH
Q psy12576 74 DWNPCKAAGVCLML-LSSCCEEDM-----VPHILPFVNANI-EHADWRHRDAALMSFGAILVRPS-FIITISERNFIMEV 145 (165)
Q Consensus 74 ew~~~~~a~~~Ld~-la~~~~~~i-----~~~vl~~i~~~l-~~~dw~~R~Aa~~Alg~i~EG~~-~~~~~~~l~~il~~ 145 (165)
.|..+++|..+|-. +...+++.. +..++..+.+.+ .+.+...|.+|+.++|.+++|.. +.+..+|...++|.
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ 108 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTP 108 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 49999998888777 654444322 245788888889 79999999999999999999998 65432799999999
Q ss_pred HHhhcCCCCHHHHHHHHhcC
Q psy12576 146 VCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 146 v~~~l~D~~p~VR~aA~~al 165 (165)
+++.+.|..+.||.+|..||
T Consensus 109 ll~~l~dkk~~V~~aa~~al 128 (249)
T 2qk1_A 109 LLDRTKEKKPSVIEAIRKAL 128 (249)
T ss_dssp HHHGGGCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999987764
No 31
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.39 E-value=3.5e-06 Score=63.86 Aligned_cols=134 Identities=19% Similarity=0.107 Sum_probs=87.0
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHH-----hHHHHHHHHHhhccCCCCCcCCCc
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGAL-----QYLVPILTQKLTKQEELDDEDDWN 76 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~l~p~ll~~l~~~~ed~dddew~ 76 (165)
++++..+...|++....+...+ ......+++.. +....+..+-.++ +..+|.|++.+.+ +++.
T Consensus 60 ~~~~~~vr~~a~~aL~~~~~~~--~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d-------~~~~ 127 (211)
T 3ltm_A 60 KDEDAWVRRAAADALGQIGDER--AVEPLIKALKD---EDGWVRQSAAVALGQIGDERAVEPLIKALKD-------EDWF 127 (211)
T ss_dssp TCSCHHHHHHHHHHHHHHCCGG--GHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-------SSHH
T ss_pred cCCCHHHHHHHHHHHHhhCCHH--HHHHHHHHHcC---CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhC-------CCHH
Confidence 4567788888988888877532 11122223321 2111222222222 3467788877742 2467
Q ss_pred hhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576 77 PCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQ 156 (165)
Q Consensus 77 ~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~ 156 (165)
.+..|..+|..+ |+ +..++.+.+.+.+++|..|.+|+.+||.+.. +.+++.+.+.++|+++.
T Consensus 128 vr~~a~~aL~~~----~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~ 189 (211)
T 3ltm_A 128 VRIAAAFALGEI----GD---ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGF 189 (211)
T ss_dssp HHHHHHHHHHHH----CC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHc----CC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHH
Confidence 777777777655 32 2345555667789999999999999999953 45677778888899999
Q ss_pred HHHHHHhcC
Q psy12576 157 IRVAALQCL 165 (165)
Q Consensus 157 VR~aA~~al 165 (165)
||.+|..+|
T Consensus 190 vr~~A~~aL 198 (211)
T 3ltm_A 190 ARKVAVNYL 198 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.39 E-value=1.3e-06 Score=67.58 Aligned_cols=105 Identities=20% Similarity=0.137 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---ch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MV-PHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
..+|.|+++|... ++.....|..+|..|+..-+.. ++ .-++|.+.+.+.++++..|+.|+.+|+.++.+
T Consensus 96 g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 96 GALPALVQLLSSP-------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp THHHHHHHGGGCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHcCC-------CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 4788888888742 2567777888888776544422 22 23677777888899999999999999999987
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......-.-..+++.+++.+.++++.||..|+.+|
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 204 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 204 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 755322212267899999999999999999998764
No 33
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.37 E-value=7e-07 Score=63.72 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=61.6
Q ss_pred HHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc
Q psy12576 56 VPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT 135 (165)
Q Consensus 56 ~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~ 135 (165)
+|.|++.|.+ ++|..+..|..+|..+ ++ +..++.+.+.+.+++|..|.+|+.+||.+..
T Consensus 44 ~~~L~~~L~d-------~~~~vR~~A~~aL~~~----~~---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------- 102 (131)
T 1te4_A 44 FEPLLESLSN-------EDWRIRGAAAWIIGNF----QD---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------- 102 (131)
T ss_dssp HHHHHHGGGC-------SCHHHHHHHHHHHGGG----CS---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------
T ss_pred HHHHHHHHcC-------CCHHHHHHHHHHHHhc----CC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence 4666666642 2377777776665543 22 3345555566679999999999999999862
Q ss_pred hHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 136 ISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 136 ~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+..++.+.+.++|+++.||.+|..+|
T Consensus 103 ----~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 103 ----ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp ----HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred ----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34577788888999999999998875
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.35 E-value=2.4e-06 Score=64.40 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---ch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MV-PHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
..+|.|+++|... +......|..+|..|+..-++. ++ .-++|.+.+.+.+++...|+.|+.+|+.++.+
T Consensus 96 g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 96 GALPALVQLLSSP-------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp TCHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHcCC-------cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 4678888888642 2566777888888887543321 22 33567777778888999999999999999987
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......-.-...++.+++.+.++++.||..|+.+|
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL 204 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 554322222356899999999999999999998875
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.34 E-value=9.7e-07 Score=76.11 Aligned_cols=105 Identities=9% Similarity=0.016 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
.++|.|+++|... +|.....|..+|..++...+. .++ ..++|.+...+.+++|..|++|+.+||.++.|
T Consensus 299 ~~v~~Lv~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 299 RIPKRLVELLSHE-------STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371 (530)
T ss_dssp TCHHHHHHGGGCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHCCC-------ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 5778888887632 367777777777777643332 122 35677777888899999999999999999998
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......-.-..++|.+++.+.++++.||.+|+.+|
T Consensus 372 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL 407 (530)
T 1wa5_B 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 407 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 765332211246889999999999999999998764
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.33 E-value=2.8e-06 Score=65.68 Aligned_cols=105 Identities=20% Similarity=0.126 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchh-hHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVP-HILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~-~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
..+|.|+++|...+ ......|..+|..++..-++ .++. -.+|.+...+.++++..|+.|+.+|+.++.+
T Consensus 54 g~i~~L~~lL~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 126 (252)
T 4db8_A 54 GALPALVQLLSSPN-------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126 (252)
T ss_dssp THHHHHHHGGGCSC-------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHcCCC-------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 57888888887432 45677777778777653331 2332 3677777888889999999999999999988
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......-.-..++|.+++.+.++++.||..|+.+|
T Consensus 127 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 162 (252)
T 4db8_A 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 765322223356899999999999999999998764
No 37
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.32 E-value=5.3e-06 Score=63.46 Aligned_cols=105 Identities=21% Similarity=0.146 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---ch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MV-PHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
..+|.|+++|... ++.....|..+|..|+..-++. ++ .-+++.+.+.+.++++..|..|+.+|+.++.+
T Consensus 128 ~~i~~L~~~l~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 128 GGVEVLVKLLTST-------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 200 (252)
T ss_dssp THHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 5788888887732 2567788888888887654321 11 34667777788899999999999999999986
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......-.-..+++.+++.+.++++.||..|+.+|
T Consensus 201 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 201 PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 554322212356889999999999999999998764
No 38
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.31 E-value=4.6e-06 Score=65.90 Aligned_cols=78 Identities=12% Similarity=-0.023 Sum_probs=44.8
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD 154 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~ 154 (165)
+..+..+..+|..++...+ ...+.+++.+...+.+++|..|.+|+.++|.+.. +..++.+.+.+.|++
T Consensus 105 ~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~ 172 (280)
T 1oyz_A 105 ACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPN 172 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCC
Confidence 4555555555555544333 2345566666666666666666666666666543 113555666666777
Q ss_pred HHHHHHHHhc
Q psy12576 155 TQIRVAALQC 164 (165)
Q Consensus 155 p~VR~aA~~a 164 (165)
+.||.+|..+
T Consensus 173 ~~vr~~a~~a 182 (280)
T 1oyz_A 173 GDVRNWAAFA 182 (280)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 39
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.31 E-value=8.4e-06 Score=61.26 Aligned_cols=134 Identities=19% Similarity=0.110 Sum_probs=86.5
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHH-----hHHHHHHHHHhhccCCCCCcCCCc
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGAL-----QYLVPILTQKLTKQEELDDEDDWN 76 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~l~p~ll~~l~~~~ed~dddew~ 76 (165)
++++..+...|++....+...+ ......+++.. +....+..+-.++ +..+|.|++.+.+ +++.
T Consensus 55 ~~~~~~vr~~a~~~L~~~~~~~--~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d-------~~~~ 122 (201)
T 3ltj_A 55 KDEDAWVRRAAADALGQIGDER--AVEPLIKALKD---EDGWVRQSAAVALGQIGDERAVEPLIKALKD-------EDWF 122 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGG--GHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-------SSHH
T ss_pred cCCCHHHHHHHHHHHHhhCCHH--HHHHHHHHHcC---CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcC-------CCHH
Confidence 4567778888888887776532 11122223321 2111222222222 3467778777742 2367
Q ss_pred hhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576 77 PCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQ 156 (165)
Q Consensus 77 ~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~ 156 (165)
.+..|..+|..+. . +..++.+.+.+.+++|..|.+|+.+||.+.. +..++.+.+.++|+++.
T Consensus 123 vr~~a~~aL~~~~---~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~ 184 (201)
T 3ltj_A 123 VRIAAAFALGEIG---D----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGF 184 (201)
T ss_dssp HHHHHHHHHHHHT---C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhC---C----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHH
Confidence 7777777776653 1 3455566677789999999999999999942 34567777788899999
Q ss_pred HHHHHHhcC
Q psy12576 157 IRVAALQCL 165 (165)
Q Consensus 157 VR~aA~~al 165 (165)
||.+|..+|
T Consensus 185 vr~~A~~aL 193 (201)
T 3ltj_A 185 ARKVAVNYL 193 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 40
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.30 E-value=5.1e-06 Score=63.57 Aligned_cols=105 Identities=21% Similarity=0.148 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
..+|.++++|... +......|..+|..|+...++ .++ .-+++.+.+.+.++++..|..++.+|+.++.+
T Consensus 86 ~~i~~l~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 86 GGVEVLVKLLTST-------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp THHHHHHHHTTCS-------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 5688888888732 246677777788877753332 122 23667777788899999999999999999987
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......-.-..+++.+++.+.++++.||..|+.+|
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 194 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARAL 194 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 655322222367899999999999999999998764
No 41
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.26 E-value=1.5e-06 Score=83.00 Aligned_cols=145 Identities=10% Similarity=0.083 Sum_probs=96.4
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHH---HHHhhccCC----------
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPIL---TQKLTKQEE---------- 68 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~l---l~~l~~~~e---------- 68 (165)
+++++.++..+++||.++.+.+.- +. ....+.+++.|++++ +..|.+.++
T Consensus 361 ~~~~~~vs~~~l~fW~~ll~~~~~-----------~~------~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~ 423 (1204)
T 3a6p_A 361 THPSQFLRSSTQMTWGALFRHEIL-----------SR------DPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSR 423 (1204)
T ss_dssp TSSCHHHHHHHHHHHHHHHSCTTT-----------TT------CHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHH
T ss_pred hCccHHhHHHHHHHHHHHHhcccc-----------cc------cHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhh
Confidence 456788999999999999975320 00 013556677888888 444433221
Q ss_pred --CCCcCC-----CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc-------------------------cCchHHH
Q psy12576 69 --LDDEDD-----WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE-------------------------HADWRHR 116 (165)
Q Consensus 69 --d~ddde-----w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~-------------------------~~dw~~R 116 (165)
+|+++| |+.++..+..|+.++...|...++.+++++.+.+. ++.|..+
T Consensus 424 ~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 503 (1204)
T 3a6p_A 424 FDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQW 503 (1204)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHH
Confidence 111112 57788899999999999998778777777744332 4679999
Q ss_pred HHHHHHHHHhhcCCcchhchHh-----HHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 117 DAALMSFGAILVRPSFIITISE-----RNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 117 ~Aa~~Alg~i~EG~~~~~~~~~-----l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
+|.+.+++++++|+....-..+ .+.+++.+++ +...+|.+|+.++.|
T Consensus 504 ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~-~~~~~p~l~~~~i~~ 555 (1204)
T 3a6p_A 504 EAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN-FDTKDPLILSCVLTN 555 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH-CCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh-CCCCChHHHHHHHHH
Confidence 9999999999999954221122 3445554222 245688999888765
No 42
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.22 E-value=1.1e-05 Score=66.85 Aligned_cols=106 Identities=17% Similarity=0.065 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHc-CC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCC-EE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~-~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
.++|.+++++... .++.....|..+|..|+... +. .++..++|.+.+.+.++++..|..++.+|+.++++
T Consensus 149 ~~i~~L~~~l~~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 149 NILPPLLQLFSKQ------NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp TCHHHHHHHTTSC------CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHhcCC------CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 4678888887631 23678888899999888654 21 34577888888888899999999999999999987
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
..+....-....+++.+++.+.++++.||.+|+.+|
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 258 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV 258 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHH
Confidence 654322212346889999999999999999998764
No 43
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.20 E-value=7.9e-06 Score=70.37 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
..++|.|+.+|... +......|..+|..|+...++ .++ ..++|.+.+.+.+++|..|..|+.+||.++.
T Consensus 256 ~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 256 SQALPTLAKLIYSM-------DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp GGGHHHHHHHTTCC-------CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 45777888877531 246677788888888764332 122 2456667777889999999999999999999
Q ss_pred CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
|.......-.-..+++.+++.+.++++.||.+|+.+|
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8765322112247899999999999999999998764
No 44
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.18 E-value=1e-05 Score=69.44 Aligned_cols=106 Identities=13% Similarity=0.045 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~ 130 (165)
..+|.|++.|... .++.....+..+|..|+...+. .++..++|.+...+.++++..|..|+.+|+.++.|.
T Consensus 202 g~l~~Ll~lL~~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 202 GALLPLLAQLNEH------TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp TCHHHHHHTCCTT------CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred CcHHHHHHHHhcC------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 4677777777422 1367788888899988877553 345678888888999999999999999999999987
Q ss_pred cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
......-.-..+++.+++.+.++++.||..|+.+|
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 65322212246889999999999999999998764
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.17 E-value=6.5e-06 Score=64.99 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=49.3
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD 154 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~ 154 (165)
+..+..|..+|..++. .. .+|.+.+.+.+++|..|.+|+.+||.+..+ -+.+++.+.+.+.|++
T Consensus 142 ~~vR~~a~~aL~~~~~---~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~ 205 (280)
T 1oyz_A 142 TNVRRATAFAISVIND---KA----TIPLLINLLKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKN 205 (280)
T ss_dssp HHHHHHHHHHHHTC------C----CHHHHHHHHTCSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHhcCC---HH----HHHHHHHHHcCCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCC
Confidence 5666666666554322 23 344444556788888888888888887421 1345677788888888
Q ss_pred HHHHHHHHhcC
Q psy12576 155 TQIRVAALQCL 165 (165)
Q Consensus 155 p~VR~aA~~al 165 (165)
+.||..|+.+|
T Consensus 206 ~~vR~~A~~aL 216 (280)
T 1oyz_A 206 EEVRIEAIIGL 216 (280)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 46
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.12 E-value=3e-05 Score=68.31 Aligned_cols=79 Identities=6% Similarity=0.053 Sum_probs=66.6
Q ss_pred HHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 84 CLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 84 ~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
+|..|+......+.+.++|.+.+.+.|+++..|++|++|++.+.....+. .. -+.+++.+.+.|.|++|.||.+|..
T Consensus 106 AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~-~~--~~~~~~~l~~lL~d~d~~V~~~A~~ 182 (591)
T 2vgl_B 106 AVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM-VE--DQGFLDSLRDLIADSNPMVVANAVA 182 (591)
T ss_dssp HHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC-HH--HHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh-cc--cccHHHHHHHHhCCCChhHHHHHHH
Confidence 37788877777899999999999999999999999999999999854432 21 2478999999999999999999987
Q ss_pred cC
Q psy12576 164 CL 165 (165)
Q Consensus 164 al 165 (165)
+|
T Consensus 183 aL 184 (591)
T 2vgl_B 183 AL 184 (591)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 47
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.00 E-value=3.6e-05 Score=62.94 Aligned_cols=138 Identities=8% Similarity=-0.011 Sum_probs=91.7
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA 81 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a 81 (165)
++++.++..+|...+.+++..- | .++..+.+ ...+|.|+++|.... +-+..+.|
T Consensus 92 ~s~~~~vr~~Aa~~Lg~ia~~n----------------~--~~~~~vv~--~g~l~~Ll~LL~~~~------~~~v~~~A 145 (296)
T 1xqr_A 92 EAGAAGLRWRAAQLIGTCSQNV----------------A--AIQEQVLG--LGALRKLLRLLDRDA------CDTVRVKA 145 (296)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTC----------------H--HHHHHHHH--TTHHHHHHHHHHHCS------CHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCC----------------H--HHHHHHHH--CCCHHHHHHHHccCC------CHHHHHHH
Confidence 4566777788888888877421 1 01111211 246777777776421 13556677
Q ss_pred HHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576 82 GVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI 157 (165)
Q Consensus 82 ~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~V 157 (165)
..+|..|+...+. .++ ...+|.+...+++++.+.|..|++||+.++.|-.+....-.-..+++.++..|.++++.|
T Consensus 146 ~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v 225 (296)
T 1xqr_A 146 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPF 225 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTH
T ss_pred HHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhH
Confidence 7777777654432 222 236667777788899999999999999999884433222123578899999999999999
Q ss_pred HHHHHhcC
Q psy12576 158 RVAALQCL 165 (165)
Q Consensus 158 R~aA~~al 165 (165)
|..|+.+|
T Consensus 226 ~~~al~aL 233 (296)
T 1xqr_A 226 HEHVLGAL 233 (296)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 48
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.91 E-value=1.7e-05 Score=68.06 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccC-chHHHHHHHHHHHHhhc
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHA-DWRHRDAALMSFGAILV 128 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~-dw~~R~Aa~~Alg~i~E 128 (165)
.++|.|+++|... ++.....|..+|..|+...+. .++ ..++|.+...+.++ ++..|+.|+.+|+.++.
T Consensus 286 g~v~~Lv~lL~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 286 GVCPRLVELLLHP-------SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp TCHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCC-------ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 5788888888643 256677777777777653332 122 33567777777788 99999999999999998
Q ss_pred CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
|.......-.-..++|.+++.+.++++.||..|+.+|
T Consensus 359 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL 395 (528)
T 4b8j_A 359 GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAI 395 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8655332222347889999999999999999998764
No 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.86 E-value=5.4e-05 Score=71.20 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccC-chHHHHHHHHHHHHhhcCCcc
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHA-DWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~-dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
.++|.+|....+.+ -.++++|..+++.+...++..-++.++|.+-.++.+. .|+.+.+|+-.++.+++-..
T Consensus 95 ~~~~~~~~~~~dk~-------~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~- 166 (986)
T 2iw3_A 95 QLVPAICTNAGNKD-------KEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK- 166 (986)
T ss_dssp TTHHHHHHHTTCSS-------HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH-
T ss_pred HHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH-
Confidence 36777777766432 4789999999999999999755688899888888765 69999999999999999774
Q ss_pred hhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 133 IITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 133 ~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
......++.|+|++...+-|-.|.|..+|..+
T Consensus 167 ~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~ 198 (986)
T 2iw3_A 167 DQVALRMPELIPVLSETMWDTKKEVKAAATAA 198 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHhccchhcchHhhcccCcHHHHHHHHHH
Confidence 45666899999999999999999999999765
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.82 E-value=4.7e-05 Score=67.07 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=68.0
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD 154 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~ 154 (165)
....+.+..++..++..-++ ++..+.+.+.+-++++|+..|..|+.++|.+. .+ ...+.+++.+.+.+.|++
T Consensus 63 ~~~Krl~yl~l~~~~~~~~e-~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~----~~~~~l~~~l~~~L~d~~ 134 (591)
T 2vgl_B 63 LELKKLVYLYLMNYAKSQPD-MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VD----KITEYLCEPLRKCLKDED 134 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSHH-HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SG----GGHHHHHHHHHHHSSCSC
T ss_pred HHHHHHHHHHHHHHcccCch-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hH----HHHHHHHHHHHHHcCCCC
Confidence 56778888888888776553 55666788888999999999999999999996 22 246778899999999999
Q ss_pred HHHHHHHHhcC
Q psy12576 155 TQIRVAALQCL 165 (165)
Q Consensus 155 p~VR~aA~~al 165 (165)
|.||.+|+.||
T Consensus 135 ~~VRk~A~~al 145 (591)
T 2vgl_B 135 PYVRKTAAVCV 145 (591)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99999998774
No 51
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.77 E-value=1.5e-05 Score=70.87 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
+.+|..|+......+.+.+++.+.+.+.++++..|++|++|++.+..+..+ .++.+++.+.+.+.|++|.|+.+|
T Consensus 125 ~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-----~v~~~~~~l~~lL~D~d~~V~~~A 199 (618)
T 1w63_A 125 GLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-----LMEMFLPATKNLLNEKNHGVLHTS 199 (618)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-----GGGGGGGGTTTSTTCCCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-----HHHHHHHHHHHHhCCCCHhHHHHH
Confidence 345667777666678899999999999999999999999999999987654 234678888889999999999999
Q ss_pred HhcC
Q psy12576 162 LQCL 165 (165)
Q Consensus 162 ~~al 165 (165)
+.+|
T Consensus 200 l~~L 203 (618)
T 1w63_A 200 VVLL 203 (618)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 52
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.76 E-value=2.4e-05 Score=55.56 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI 133 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~ 133 (165)
.-++.++..|.+. ++..+..|..+|.. +|+.- ++.+.+.+.+++|..|.+|+.+||.+..
T Consensus 12 ~~~~~l~~~L~~~-------~~~vR~~A~~~L~~----~~~~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 12 SGLVPRGSHMADE-------NKWVRRDVSTALSR----MGDEA----FEPLLESLSNEDWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp ---------CCSS-------CCCSSSSCCSSTTS----CSSTT----HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----
T ss_pred ccHHHHHHHhcCC-------CHHHHHHHHHHHHH----hCchH----HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----
Confidence 3455666665421 25555555544432 24322 3566677889999999999999999863
Q ss_pred hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 134 ITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 134 ~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+..++.+.+.+.|+++.||.+|+.+|
T Consensus 72 ------~~a~~~L~~~L~d~~~~VR~~A~~aL 97 (131)
T 1te4_A 72 ------ERAVEPLIKLLEDDSGFVRSGAARSL 97 (131)
T ss_dssp ------HHHHHHHHHHHHHCCTHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 23477778888999999999998764
No 53
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.57 E-value=0.00036 Score=54.51 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhHHhh----hcC-CCCC------------cccHHHHHHHHhHHHHHHHHHhhccCCCC
Q psy12576 8 VALQGIEFWSNVSDEEVDLAIEDSEAA----DFG-RPPT------------RTSRFYAKGALQYLVPILTQKLTKQEELD 70 (165)
Q Consensus 8 va~~aiEfw~tl~e~e~~~~~~~~~~~----~~g-~~~~------------~~~~~~~~~~~~~l~p~ll~~l~~~~ed~ 70 (165)
|..+|+-...+++++..++..+...-+ ... ..|. +..+..++ .++|+++....-.+
T Consensus 48 V~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~----~vVp~lfanyrigd--- 120 (253)
T 2db0_A 48 VVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK----SMIPVLFANYRIGD--- 120 (253)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHSCCCS---
T ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH----hhHHHHHHHHhcCC---
Confidence 788999999999998888887754410 000 0111 11222333 46777777666432
Q ss_pred CcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576 71 DEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT 150 (165)
Q Consensus 71 dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l 150 (165)
--..-.-+.+|..++.+.|. +++.++.-+-..+.|+|-..|-+|+-.+|+++|.-- .|....+|.+...|
T Consensus 121 ----~kikIn~~yaLeeIaranP~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~-----~yv~PfLprL~aLL 190 (253)
T 2db0_A 121 ----EKTKINVSYALEEIAKANPM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF-----KYVNPFLPRIINLL 190 (253)
T ss_dssp ----HHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH-----HHHGGGHHHHHGGG
T ss_pred ----ccceecHHHHHHHHHHhChH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc-----cccCcchHHHHHHH
Confidence 12333445679999999884 788888888889999999999999999999987432 36778899999999
Q ss_pred CCCCHHHHHHHHhcC
Q psy12576 151 QSPDTQIRVAALQCL 165 (165)
Q Consensus 151 ~D~~p~VR~aA~~al 165 (165)
.|.+..||..|.++|
T Consensus 191 ~D~deiVRaSaVEtL 205 (253)
T 2db0_A 191 HDGDEIVRASAVEAL 205 (253)
T ss_dssp GCSSHHHHHHHHHHH
T ss_pred cCcchhhhHHHHHHH
Confidence 999999999987653
No 54
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.57 E-value=0.00023 Score=63.71 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=65.8
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT 155 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p 155 (165)
-++..++|+|..+ .++++. +..+...+ ..+..+.|..|++|++++-.. .+. +.. ++.+++.++.+|+|++-
T Consensus 243 PVRETaAQtLGaL-~hLp~e-~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL----~DL-L~~-Ld~Vv~aVL~GL~D~DD 313 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP-NDIIEQLV-GFLDSGDWQVQFSGLIALGYL----KEF-VED-KDGLCRKLVSLLSSPDE 313 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS-CCHHHHHT-TGGGCSCHHHHHHHHHHHHHT----GGG-CCC-HHHHHHHHHHHTTCSSH
T ss_pred ehHHHHHHHHHHH-HhCChh-HHHHHHHH-hhcCCCCeeehhhhHHHHHHH----HHH-HHH-HHHHHHHHHhhcCCccc
Confidence 4478999999999 999965 44344444 577889999999999999998 332 222 99999999999999999
Q ss_pred HHHHHHHhcC
Q psy12576 156 QIRVAALQCL 165 (165)
Q Consensus 156 ~VR~aA~~al 165 (165)
-||.+|..+|
T Consensus 314 DVRAVAAetL 323 (800)
T 3oc3_A 314 DIKLLSAELL 323 (800)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 55
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.50 E-value=0.00022 Score=61.75 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
.++|.|+++|... +......+..+|..++..-+. .++ .-+++.+...+.+++...|+.|+++|+.|+.|
T Consensus 293 g~i~~Lv~lL~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 293 GVVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp TCHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHhcCC-------ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 5677788877642 245666677777766543221 111 22455566677899999999999999999998
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......-.-..++|.++..+.++++.||..|+.||
T Consensus 366 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 401 (529)
T 3tpo_A 366 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAI 401 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 766432222346899999999999999999998764
No 56
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.45 E-value=0.00017 Score=62.30 Aligned_cols=105 Identities=11% Similarity=0.068 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
.++|.|+++|... +......+..+|..++..-+. .++ .-+++.+...+.+++...|+.|+++|+.|+.|
T Consensus 274 g~i~~Lv~lL~~~-------~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~ 346 (510)
T 3ul1_B 274 GVVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 346 (510)
T ss_dssp TCHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS
T ss_pred ccchhhhhhhcCC-------ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 4677788877643 245666666666666433221 111 23455566678899999999999999999988
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......-.-..++|.++..+.++++.||..|+.||
T Consensus 347 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL 382 (510)
T 3ul1_B 347 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 382 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 766433222356899999999999999999998764
No 57
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.44 E-value=0.0024 Score=58.80 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcc--cHHHHHHHHhHHHHHHHHHhhccCCC-CCcCCCchhhHH
Q psy12576 5 IDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRT--SRFYAKGALQYLVPILTQKLTKQEEL-DDEDDWNPCKAA 81 (165)
Q Consensus 5 ~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~l~p~ll~~l~~~~ed-~dddew~~~~~a 81 (165)
++.....+++||.+++|+-... ++..++ .+..+...++.+++.+.+.+...+++ .|++.|+..+.+
T Consensus 141 ~~~~~~~~l~iL~~l~EEi~~~-----------~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~a 209 (971)
T 2x1g_F 141 ADVQLWIMLEVLTAIPEEAQVI-----------HTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRA 209 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----------CCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhHHHHhcc-----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHH
Confidence 4567889999999999752210 111121 23566677788888888888765433 233357888999
Q ss_pred HHHHHHHHHH--cCCcchhhHHHHHhhhc----------------ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHH
Q psy12576 82 GVCLMLLSSC--CEEDMVPHILPFVNANI----------------EHADWRHRDAALMSFGAILVRPSFIITISERNFIM 143 (165)
Q Consensus 82 ~~~Ld~la~~--~~~~i~~~vl~~i~~~l----------------~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il 143 (165)
..|+...... +|..+.+.+++++-. + .+++...|++|+-+|+.|+++.........+..++
T Consensus 210 l~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~ 288 (971)
T 2x1g_F 210 VKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLI 288 (971)
T ss_dssp HHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHH
T ss_pred HHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHH
Confidence 9999887773 663366677776655 4 12567899999999999999765332334455555
Q ss_pred HHHHh
Q psy12576 144 EVVCE 148 (165)
Q Consensus 144 ~~v~~ 148 (165)
|.++.
T Consensus 289 ~~~~~ 293 (971)
T 2x1g_F 289 KMFLD 293 (971)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 58
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.42 E-value=0.00015 Score=68.39 Aligned_cols=109 Identities=11% Similarity=0.023 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC----cchhhHHHHHhhhcc-----cCchHHHHHHHHHHH
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE----DMVPHILPFVNANIE-----HADWRHRDAALMSFG 124 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~----~i~~~vl~~i~~~l~-----~~dw~~R~Aa~~Alg 124 (165)
.+++.+++.+.++-... +.+|....|+.-|+..++..+.+ ..+|.++|++-+... ++..+.|...++.+|
T Consensus 447 ~~~~~~~~~l~~~l~~~-~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG 525 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGS-EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG 525 (1023)
T ss_dssp HHHHHHHHHHHHHHSST-TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH
Confidence 45555666655331111 13599999999999999987762 367788887776655 355667788889999
Q ss_pred HhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 125 AILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 125 ~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
...+-... ...+++.+++.+.+++.|++|+|+.+||.|+
T Consensus 526 ry~~wl~~--~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al 564 (1023)
T 4hat_C 526 QYPRFLKA--HWNFLRTVILKLFEFMHETHEGVQDMACDTF 564 (1023)
T ss_dssp TCHHHHHH--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHhc--cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 99987754 3457999999999999999999999999874
No 59
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.38 E-value=0.0013 Score=55.49 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC--cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE--DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~--~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~ 130 (165)
..+|.|++.|...+ ++.....|..+|-.|+..-.. .+. .-.+|.+.+.+.+++...|+.|+.+|+.++.+.
T Consensus 59 ~~i~~Lv~~L~~~~------~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 132 (529)
T 1jdh_A 59 QMVSAIVRTMQNTN------DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132 (529)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHhcCC------CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 46778888886432 366788888888887653221 121 235566666788899999999999999999764
Q ss_pred cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
......-.-..++|.+++.+.+++++||..|+.+
T Consensus 133 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166 (529)
T ss_dssp TTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred cchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 4322111136789999999999999999988655
No 60
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.33 E-value=0.00038 Score=56.82 Aligned_cols=104 Identities=14% Similarity=-0.018 Sum_probs=69.5
Q ss_pred HHHHHHH-HhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchh-hHHHHHhhhcc-cCchHHHHHHHHHHHHhhc
Q psy12576 55 LVPILTQ-KLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVP-HILPFVNANIE-HADWRHRDAALMSFGAILV 128 (165)
Q Consensus 55 l~p~ll~-~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~-~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~E 128 (165)
.+|.++. +|... +-.....|..+|..+++.-+. .++. -.+|.+-..+. +++...|+.|+.||++++-
T Consensus 82 ~l~~Lv~~lL~s~-------~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 82 GMHLLVGRYLEAG-------AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154 (296)
T ss_dssp HHHHHHHTTTTCS-------SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 4566666 55431 236677888888888875442 2221 23333334444 3578899999999999998
Q ss_pred CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
|.......-.-...+|.+++.|++++++||..|+.+|
T Consensus 155 ~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aL 191 (296)
T 1xqr_A 155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLL 191 (296)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8765321111236889999999999999999998764
No 61
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.27 E-value=0.00035 Score=60.49 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---ch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MV-PHILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
..++|.|..++...+ -.....|..+|..++..-.+. ++ .-++|.+.+.+.++++..+..++.++|.|+.
T Consensus 250 ~~~lp~L~~LL~~~~-------~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 250 EQILPTLVRLLHHND-------PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 322 (529)
T ss_dssp HHHHHHHHHHTTSSC-------HHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhcCCc-------HHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHc
Confidence 346777777775322 234566777787777543321 11 2355666677889999999999999999998
Q ss_pred CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
|.......-.-..+++.+...+.++++.||..|+.+|
T Consensus 323 ~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 323 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359 (529)
T ss_dssp SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8765322222356778888899999999999998764
No 62
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.27 E-value=0.00062 Score=62.36 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=70.9
Q ss_pred CCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhh
Q psy12576 73 DDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEA 149 (165)
Q Consensus 73 dew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~ 149 (165)
.+|....++..+|..++..+.+ ..++.+++.+. .+.+++++.|.+++.++|...+..... ..+++.+++.++++
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~~~ 537 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADH--PVMINSVLPLVLHA 537 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHH
Confidence 3699999999999999988773 46777777554 455578899999999999999755432 35799999999999
Q ss_pred cCCCCHHHHHHHHhcC
Q psy12576 150 TQSPDTQIRVAALQCL 165 (165)
Q Consensus 150 l~D~~p~VR~aA~~al 165 (165)
+.| |+||.+|+.+|
T Consensus 538 l~~--~~V~~~A~~al 551 (963)
T 2x19_B 538 LGN--PELSVSSVSTL 551 (963)
T ss_dssp TTC--GGGHHHHHHHH
T ss_pred hCC--chHHHHHHHHH
Confidence 977 89999998764
No 63
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.25 E-value=0.00047 Score=64.70 Aligned_cols=90 Identities=7% Similarity=-0.023 Sum_probs=76.5
Q ss_pred CCchhhHHHHHHHHHHHHcCC---------cchhhHHHHHhhhcc-----cCchHHHHHHHHHHHHhhcCCcchhchHhH
Q psy12576 74 DWNPCKAAGVCLMLLSSCCEE---------DMVPHILPFVNANIE-----HADWRHRDAALMSFGAILVRPSFIITISER 139 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~~~---------~i~~~vl~~i~~~l~-----~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l 139 (165)
+|....+|.-+|..+|..+.+ ..+|.+++++...+. .+.++.|.+++..+|.-.+..... ..++
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~--~~~l 533 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE--SAAI 533 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC--CTTH
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC--chhH
Confidence 599999999999999998763 357778888877655 678999999999999999877653 3579
Q ss_pred HHHHHHHHh--hcCCCCHHHHHHHHhcC
Q psy12576 140 NFIMEVVCE--ATQSPDTQIRVAALQCL 165 (165)
Q Consensus 140 ~~il~~v~~--~l~D~~p~VR~aA~~al 165 (165)
+.+++.++. ++.||+++||.+|+.++
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af 561 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLF 561 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHH
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHH
Confidence 999999999 99999999999998763
No 64
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.23 E-value=0.0019 Score=54.27 Aligned_cols=78 Identities=18% Similarity=0.086 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
+.+|-.|+......+++.+.+.+.+.+.|.++..|++|+++..-+..-..+ ....+++.+-+.+.|.+|.|.++|
T Consensus 122 ~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-----~v~~~~~~l~~ll~d~n~~V~~~A 196 (355)
T 3tjz_B 122 GPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-----VVKRWVNEAQEAASSDNIMVQYHA 196 (355)
T ss_dssp HHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-----HHHTTHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHHhcCCCccHHHHH
Confidence 345777777777778888888888888888888888888887766643322 244677777777778888888777
Q ss_pred Hhc
Q psy12576 162 LQC 164 (165)
Q Consensus 162 ~~a 164 (165)
+.+
T Consensus 197 l~l 199 (355)
T 3tjz_B 197 LGL 199 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 65
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.21 E-value=0.0022 Score=55.27 Aligned_cols=110 Identities=14% Similarity=0.062 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC--c--chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE--D--MVPHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~--~--i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
..++.|+.+|...+. +.-.....+.+..+|..++..-.. . .+..++|.+...+.+++...|..|+.||+.++++
T Consensus 185 G~i~~Ll~lL~~~~~--~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~ 262 (510)
T 3ul1_B 185 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 262 (510)
T ss_dssp TCHHHHHHHTCSSCG--GGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred CChHHHHHHHHhccc--hhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 456777777764321 000112234455555555543321 1 3456788888899999999999999999999998
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......-.-..+++.+++.+.++++.||..|+.+|
T Consensus 263 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 263 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 876432222356788999999999999999998764
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.13 E-value=0.00032 Score=63.14 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=48.5
Q ss_pred HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHH-HHHHhhcCCCCHHHHHHHHhcC
Q psy12576 100 ILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIM-EVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il-~~v~~~l~D~~p~VR~aA~~al 165 (165)
++|.++ .++|+++..|..|+.||+.|+++.+...+. ..+.++ +.+-+.|.|+++.||.+|+.||
T Consensus 36 i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~~~~l~-~~~~~v~~ll~~lL~D~~~~Vr~~A~gaL 100 (684)
T 4gmo_A 36 ILPVLK-DLKSPDAKSRTTAAGAIANIVQDAKCRKLL-LREQVVHIVLTETLTDNNIDSRAAGWEIL 100 (684)
T ss_dssp THHHHH-HHSSSCCSHHHHHHHHHHHHTTSHHHHHHH-HHTTHHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcHHHHHH-HHcCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445554 489999999999999999999977654332 234444 4556678999999999998764
No 67
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.13 E-value=0.00077 Score=59.79 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=62.1
Q ss_pred CchhhHHHHHHHHHHHHcC-C-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC
Q psy12576 75 WNPCKAAGVCLMLLSSCCE-E-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS 152 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~-~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D 152 (165)
....+.+.-.+ ...+. + ++...+.+.+.+-++|++...|-.|+.++|.|.. + ...+.+++.|.+.+.|
T Consensus 84 ~~~Krl~Yl~~---~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~----~~~~~l~~~l~~~L~~ 153 (618)
T 1w63_A 84 FTDKRIGYLGA---MLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---S----EMCRDLAGEVEKLLKT 153 (618)
T ss_dssp HHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---H----HHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHH---HHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---H----HHHHHHHHHHHHHHcC
Confidence 44455555333 33333 2 4566777888889999999999999999999982 2 2467889999999999
Q ss_pred CCHHHHHHHHhcC
Q psy12576 153 PDTQIRVAALQCL 165 (165)
Q Consensus 153 ~~p~VR~aA~~al 165 (165)
++|.||.+|+.|+
T Consensus 154 ~~~~VRk~A~~al 166 (618)
T 1w63_A 154 SNSYLRKKAALCA 166 (618)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998874
No 68
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.11 E-value=0.0023 Score=56.47 Aligned_cols=106 Identities=10% Similarity=0.067 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC--cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE--DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~--~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~ 130 (165)
..++.|++.|...+ +......|..+|..|+..-.. .+. .-++|.+.+.+++++...|+.|+.+|+.++.+.
T Consensus 56 ~~i~~Lv~~L~~~~------~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~ 129 (644)
T 2z6h_A 56 QMVSAIVRTMQNTN------DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129 (644)
T ss_dssp HHHHHHHHHHHSCC------CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHhcCC------CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence 56788888887421 245677788888877653221 111 235566667788899999999999999999775
Q ss_pred cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
......-.-..++|.+++.+.++++++|.+|+.||
T Consensus 130 ~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 164 (644)
T 2z6h_A 130 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164 (644)
T ss_dssp TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence 44322212367899999999999999999886553
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.10 E-value=0.00037 Score=62.16 Aligned_cols=83 Identities=8% Similarity=0.093 Sum_probs=62.8
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc--CC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT--QS 152 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l--~D 152 (165)
....+.+.-++..++..-+ +++..+.+.+.+-++|+++..|-.|+-++|.|.. ....+.+++.|.+.+ .|
T Consensus 88 ~~~Krl~YL~l~~~~~~~~-e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~~l~~~v~~~l~~~d 159 (621)
T 2vgl_A 88 YTEKQIGYLFISVLVNSNS-ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-------REMAEAFAGEIPKILVAGD 159 (621)
T ss_dssp HHHHHHHHHHHHHSCCCCH-HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHHHHTTHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHccCCc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHHHHHHHHHHHHhCCC
Confidence 3445555544444432222 4566677888889999999999999999999964 235788999999999 99
Q ss_pred CCHHHHHHHHhcC
Q psy12576 153 PDTQIRVAALQCL 165 (165)
Q Consensus 153 ~~p~VR~aA~~al 165 (165)
++|.||..|+.|+
T Consensus 160 ~~~~VRK~A~~al 172 (621)
T 2vgl_A 160 TMDSVKQSAALCL 172 (621)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998774
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.07 E-value=0.0016 Score=54.68 Aligned_cols=81 Identities=12% Similarity=0.057 Sum_probs=68.7
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD 154 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~ 154 (165)
-...+-..-.+..++.. ++.++ .+...+.+-++++++.+|=.|+-++|.|.+.- .++.+.+.+-+.+.|.|
T Consensus 82 ~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-------m~~~l~~~lk~~L~d~~ 152 (355)
T 3tjz_B 82 PTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-------MLQAIERYMKQAIVDKV 152 (355)
T ss_dssp HHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-------THHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-------HHHHHHHHHHHHcCCCC
Confidence 56677777777777776 55565 88899999999999999999999999998632 47788899999999999
Q ss_pred HHHHHHHHhc
Q psy12576 155 TQIRVAALQC 164 (165)
Q Consensus 155 p~VR~aA~~a 164 (165)
|-||.+|+-|
T Consensus 153 pyVRk~A~l~ 162 (355)
T 3tjz_B 153 PSVSSSALVS 162 (355)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999866
No 71
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.07 E-value=0.00038 Score=62.05 Aligned_cols=80 Identities=9% Similarity=0.010 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCcchhhHHHHHhhhc--ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHH
Q psy12576 82 GVCLMLLSSCCEEDMVPHILPFVNANI--EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRV 159 (165)
Q Consensus 82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l--~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~ 159 (165)
+-+|..|+......+.+.++|.|.+.+ .+.++..|+.|++|+.-+..-..+ ... .+.+++.+.+.|.|++|.|+.
T Consensus 129 ~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~~--~~~~~~~l~~lL~d~d~~V~~ 205 (621)
T 2vgl_A 129 GLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LVP--MGDWTSRVVHLLNDQHLGVVT 205 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GCC--CCSCHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hcC--chhHHHHHHHHhCCCCccHHH
Confidence 345888888877779999999999999 899999999999999999973322 221 136788888899999999999
Q ss_pred HHHhc
Q psy12576 160 AALQC 164 (165)
Q Consensus 160 aA~~a 164 (165)
+|+.+
T Consensus 206 ~a~~~ 210 (621)
T 2vgl_A 206 AATSL 210 (621)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99765
No 72
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.06 E-value=0.0039 Score=57.55 Aligned_cols=105 Identities=11% Similarity=-0.032 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-Ccch-----hhHHHHHhhhcccC-chHHHHHHHHHHHHh
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-EDMV-----PHILPFVNANIEHA-DWRHRDAALMSFGAI 126 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~~i~-----~~vl~~i~~~l~~~-dw~~R~Aa~~Alg~i 126 (165)
..+|.|+.+|...+ ....+.|+.+|..|+.... +.++ ..++|.+...+.+. +-..+..|++||+.+
T Consensus 536 Gaip~Lv~LL~s~~-------~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NL 608 (810)
T 3now_A 536 GGVKALLRMALEGT-------EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL 608 (810)
T ss_dssp THHHHHHHHHHSSC-------HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCC-------HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 46777777776422 2457888899999876543 2211 12445555556544 445667899999999
Q ss_pred hcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 127 LVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 127 ~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+.+..+....-.-...+|.+.+.+.++++.||.+|+.||
T Consensus 609 a~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L 647 (810)
T 3now_A 609 ASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647 (810)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 998754221112246788888889999999999998764
No 73
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.06 E-value=0.00087 Score=62.63 Aligned_cols=90 Identities=8% Similarity=0.001 Sum_probs=67.8
Q ss_pred CCchhhHHHHHHHHHHHHcCC----cchhhHHHHHhhhcc-----cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHH
Q psy12576 74 DWNPCKAAGVCLMLLSSCCEE----DMVPHILPFVNANIE-----HADWRHRDAALMSFGAILVRPSFIITISERNFIME 144 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~~~----~i~~~vl~~i~~~l~-----~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~ 144 (165)
+|....++.-++..+|..+++ ..++.+++++..... ++.+..|..++.++|...+.... ...+++.+++
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~--~~~~l~~vl~ 543 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVIL 543 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 598889999999888776663 247777877755222 24455555688999988865443 2457999999
Q ss_pred HHHhhcCCCCHHHHHHHHhcC
Q psy12576 145 VVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 145 ~v~~~l~D~~p~VR~aA~~al 165 (165)
.+++++.|++++||.+|+.++
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al 564 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTF 564 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 74
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.99 E-value=0.001 Score=60.68 Aligned_cols=105 Identities=13% Similarity=-0.013 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF 132 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~ 132 (165)
..+|.|+.++...+ ....+.+..+|..|+...+. .....++|.+.+.+.+.+|..|+.|+.+|+.++.+...
T Consensus 360 g~l~~Ll~lL~~~~-------~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~ 432 (780)
T 2z6g_A 360 GGMQALGLHLTDPS-------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432 (780)
T ss_dssp THHHHHGGGTTCSC-------HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred chHHHHHHHHcCCc-------hHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 45677777775321 23455667777777766653 35677888888899999999999999999999988654
Q ss_pred hhchHhHHHHHHHHHhhcCC-CC-HHHHHHHHhcC
Q psy12576 133 IITISERNFIMEVVCEATQS-PD-TQIRVAALQCL 165 (165)
Q Consensus 133 ~~~~~~l~~il~~v~~~l~D-~~-p~VR~aA~~al 165 (165)
....-.-...++.+++.+.+ ++ +.||..|+.+|
T Consensus 433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 32211224567788888765 33 48988887654
No 75
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.90 E-value=0.005 Score=56.03 Aligned_cols=107 Identities=10% Similarity=0.070 Sum_probs=76.3
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC--cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE--DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR 129 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~--~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG 129 (165)
+.+++.|++.|...+ +......|..+|-.|+..-.. .+. .-++|.+.+.+++++...|+.|+.+|+.++.+
T Consensus 191 ~~~i~~Lv~~L~~~~------d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTN------DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHcCCC------CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 357888888887431 246678888888888754221 121 23566666777888999999999999999987
Q ss_pred CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.......-.-..+++.+++.+.+++++||..|+.||
T Consensus 265 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 265 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 300 (780)
T ss_dssp STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 554322111257899999999999999999887653
No 76
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.78 E-value=0.0046 Score=57.13 Aligned_cols=133 Identities=11% Similarity=-0.025 Sum_probs=91.9
Q ss_pred CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHH
Q psy12576 3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAG 82 (165)
Q Consensus 3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~ 82 (165)
|+++.+..+|.|.+...|..+ .++.++.+. . +|.|..++...+ ...+.-|.
T Consensus 301 s~~~~~q~~A~~al~~aa~~~-------------------~~R~~I~~~--g-v~~L~~Ll~s~~-------~~vr~~Al 351 (810)
T 3now_A 301 TDDELQQRVACECLIAASSKK-------------------DKAKALCEQ--G-VDILKRLYHSKN-------DGIRVRAL 351 (810)
T ss_dssp SSCHHHHHHHHHHHHHHTTSH-------------------HHHHTTHHH--H-HHHHHHHTTCSC-------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCc-------------------HHHHHHHHc--C-cHHHHHHHcCCC-------HHHHHHHH
Confidence 456666667777777766531 123344442 2 377777775321 24466778
Q ss_pred HHHHHHHHHcC-C---cc-----hhhHHHHHhhhcccC--chHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576 83 VCLMLLSSCCE-E---DM-----VPHILPFVNANIEHA--DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 83 ~~Ld~la~~~~-~---~i-----~~~vl~~i~~~l~~~--dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
.+|-.++...+ + .+ ++.+++.+...+.++ |...|+.|+.+|+.+..+......-..-..++|.+++.+.
T Consensus 352 ~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~ 431 (810)
T 3now_A 352 VGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR 431 (810)
T ss_dssp HHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhC
Confidence 88999986443 1 22 456778888888888 8999999999999999988764322223578999999999
Q ss_pred CCCHHHHHHHHhc
Q psy12576 152 SPDTQIRVAALQC 164 (165)
Q Consensus 152 D~~p~VR~aA~~a 164 (165)
++++.+++.|..+
T Consensus 432 s~d~~i~~~al~~ 444 (810)
T 3now_A 432 GGNQSCLYGVVTT 444 (810)
T ss_dssp TTCGGGHHHHHHH
T ss_pred CCChHHHHHHHHH
Confidence 9999999998754
No 77
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.75 E-value=0.006 Score=50.81 Aligned_cols=110 Identities=13% Similarity=0.024 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHH---cCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHH
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSC---CEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGA 125 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~---~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~ 125 (165)
...+|.|+++|...++ .......+.|..+|..|+.+ .++ .+. .-.+|.+.+.+.+.+...++.|+.+|+.
T Consensus 213 ~Gai~~Lv~lL~~~~~---~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n 289 (354)
T 3nmw_A 213 DGALAFLVGTLTYRSQ---TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289 (354)
T ss_dssp TTHHHHHHHHTTCCCS---SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhccCCC---cccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3567888888864321 11135677788889999873 222 122 2256667777888999999999999999
Q ss_pred hhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 126 ILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 126 i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
++.|..+....-.-...+|.+++.+.++++++|..|+.+|
T Consensus 290 La~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 290 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp HTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9977655322222356799999999999999999887664
No 78
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.68 E-value=0.00019 Score=67.67 Aligned_cols=87 Identities=18% Similarity=0.151 Sum_probs=61.5
Q ss_pred hhhH-HHHHHHHHHHHcC-CcchhhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCCcch-hchHhHHHHHHHHHhhcCC
Q psy12576 77 PCKA-AGVCLMLLSSCCE-EDMVPHILPFVNANIE-HADWRHRDAALMSFGAILVRPSFI-ITISERNFIMEVVCEATQS 152 (165)
Q Consensus 77 ~~~~-a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l~~il~~v~~~l~D 152 (165)
..+. |..|+..||+..- ...++.++..+.+... +++| .|.+.+--+-++.- -.-. ....+...|+.+|+..|.|
T Consensus 777 L~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f-~n~f~l~~~~~~~i~~~v~~~L~D 854 (997)
T 1vsy_5 777 LASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLS-AELLQLTEEEKNKILEFVVSNLYN 854 (997)
T ss_dssp HTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHH-HHTTTSCTTHHHHTHHHHTTTTTC
T ss_pred HHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHhcC
Confidence 4455 6678988887654 5677888888877776 7899 88777554433332 1111 2233567899999999999
Q ss_pred CC-HHHHHHHHhcC
Q psy12576 153 PD-TQIRVAALQCL 165 (165)
Q Consensus 153 ~~-p~VR~aA~~al 165 (165)
++ ..||..|..+|
T Consensus 855 ~q~~EVRe~Aa~tL 868 (997)
T 1vsy_5 855 EQFVEVRVRAASIL 868 (997)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 99 99999998764
No 79
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.019 Score=52.77 Aligned_cols=108 Identities=7% Similarity=0.092 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHc------CC----cchhhHHHHHhhhcccC-------c---h
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCC------EE----DMVPHILPFVNANIEHA-------D---W 113 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~------~~----~i~~~vl~~i~~~l~~~-------d---w 113 (165)
..+|.|++.+....+.. -..+..|+.+|.+|+... +. ..+|+++..+...-... + -
T Consensus 498 Gal~~LL~lL~s~~~~~----~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~ 573 (778)
T 3opb_A 498 GAVKIILEYLANKQDIG----EPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL 573 (778)
T ss_dssp THHHHHHHHTTCC---C----CHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred CCHHHHHHHHhcCCCcc----hHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccH
Confidence 45777777777543110 125678889999987543 32 12344444433110111 1 1
Q ss_pred HHHHHHHHHHHHhhcCCc---chhchHhHH--HHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 114 RHRDAALMSFGAILVRPS---FIITISERN--FIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 114 ~~R~Aa~~Alg~i~EG~~---~~~~~~~l~--~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
..+.-|++||+.++.+.. +..+...+. ..+|.+.+.+.+.++.||.||+.++
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI 630 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 458899999999999873 223333343 5899999999999999999998864
No 80
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.48 E-value=0.0086 Score=50.94 Aligned_cols=103 Identities=11% Similarity=0.005 Sum_probs=72.5
Q ss_pred HHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCc
Q psy12576 56 VPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRPS 131 (165)
Q Consensus 56 ~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~ 131 (165)
+|.++.+|...+ ......|+.+|..|+..-++ .+. .-.+|.+.+.+.+++...++.|..||+.++-+-.
T Consensus 4 l~~lv~~L~s~~-------~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 76 (457)
T 1xm9_A 4 IPKAVQYLSSQD-------EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp HHHHHHHHHSSC-------THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 567777777532 45677788888888743332 222 2356777778888999999999999999998633
Q ss_pred chhchHhHHHHHHHHHhhcC-CCCHHHHHHHHhcC
Q psy12576 132 FIITISERNFIMEVVCEATQ-SPDTQIRVAALQCL 165 (165)
Q Consensus 132 ~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA~~al 165 (165)
+....---...+|.+++.|. ++++.||..|..+|
T Consensus 77 ~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL 111 (457)
T 1xm9_A 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLL 111 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 32211112466889999998 89999999987654
No 81
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.46 E-value=0.0049 Score=51.96 Aligned_cols=90 Identities=11% Similarity=-0.025 Sum_probs=64.1
Q ss_pred chhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC--
Q psy12576 76 NPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS-- 152 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D-- 152 (165)
...+.+..+|..|+...+. .....++|.+.+.+.++++..|..|+.+|+.++.+..+....-.-...++.+++.+.+
T Consensus 242 ~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~ 321 (529)
T 1jdh_A 242 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321 (529)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC
Confidence 4556677788888876653 3455677778788889999999999999999988654322111123467777887764
Q ss_pred CCHHHHHHHHhcC
Q psy12576 153 PDTQIRVAALQCL 165 (165)
Q Consensus 153 ~~p~VR~aA~~al 165 (165)
.++.||..|+.+|
T Consensus 322 ~~~~v~~~a~~~L 334 (529)
T 1jdh_A 322 DREDITEPAICAL 334 (529)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4489999888764
No 82
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.42 E-value=0.014 Score=50.41 Aligned_cols=109 Identities=13% Similarity=0.016 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhhccCCCCCcCCC-chhhHHHHHHHHHHHH---cCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHH
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDW-NPCKAAGVCLMLLSSC---CEE---DMV-PHILPFVNANIEHADWRHRDAALMSFG 124 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew-~~~~~a~~~Ld~la~~---~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg 124 (165)
...+|.|.++|...++ ..| ...+.|..+|..|+.+ .++ .+. .-.+|.+.+.+.+.+...++.|+.||+
T Consensus 329 ~Gal~~Lv~LL~~~~~----~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 329 DGALAFLVGTLTYRSQ----TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp TTHHHHHHHHTTCCCS----SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCC----cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3567888888864321 123 4677788889999863 222 122 235667777888899999999999999
Q ss_pred HhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 125 AILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 125 ~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.++-|..+....-.-...+|.+++.+.+++++||..|+.+|
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL 445 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99977555322222357799999999999999999998764
No 83
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.34 E-value=0.012 Score=46.51 Aligned_cols=105 Identities=6% Similarity=-0.144 Sum_probs=72.0
Q ss_pred HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchh-hHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVP-HILPFVNANIEHADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~-~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~ 130 (165)
.+|.++++|...+ .+-.....|+.+|..++..-++ .|.. -.+|.+...+.+++...|+.|+.||+.++-|.
T Consensus 9 ~i~~lV~lL~s~~-----~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 9 TLERAVSMLEADH-----MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CHHHHHHTCCSSC-----CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCCC-----chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 3677777776432 1113445666788888765442 2332 25677777788899999999999999999876
Q ss_pred cchhchHhHHHHHHHHHhhcC-CCCHHHHHHHHhc
Q psy12576 131 SFIITISERNFIMEVVCEATQ-SPDTQIRVAALQC 164 (165)
Q Consensus 131 ~~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA~~a 164 (165)
.+....---...+|.+++.|. .+++.+|..|.-+
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~a 118 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGL 118 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHH
Confidence 553222223567888999997 5899999988643
No 84
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.31 E-value=0.0028 Score=50.49 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=31.9
Q ss_pred HHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 103 FVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 103 ~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.+...+.+++|+.|+++..++| .+.+ ..|+|+++.||.+|...|
T Consensus 198 ~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L-~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 198 DLLELLHDPDWTVRLAAVEHAS------------------LEAL-RELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGCSSHHHHHHHHHHSC------------------HHHH-HHCCCCCHHHHHHHHCCC
T ss_pred HHHHHHcCCCHHHHHHHHHcCC------------------HHHH-HHccCCCHHHHHHHHHHh
Confidence 3455577888888888888765 1333 334999999999998765
No 85
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.23 E-value=0.0069 Score=53.39 Aligned_cols=104 Identities=13% Similarity=-0.015 Sum_probs=72.0
Q ss_pred HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch
Q psy12576 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI 133 (165)
Q Consensus 55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~ 133 (165)
.+|.|++++... +-.....+..+|..|+...++ ..+..++|.+...+.+.++..|+.|..+|+.++.+....
T Consensus 225 ~l~~L~~ll~~~-------~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~ 297 (644)
T 2z6h_A 225 GMQALGLHLTDP-------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 297 (644)
T ss_dssp HHHHHHTTTTCS-------CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHhcC-------CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 455666655421 134566777788888776553 345677888888889999999999999999999875442
Q ss_pred hchHhHHHHHHHHHhhcCC-C-CHHHHHHHHhcC
Q psy12576 134 ITISERNFIMEVVCEATQS-P-DTQIRVAALQCL 165 (165)
Q Consensus 134 ~~~~~l~~il~~v~~~l~D-~-~p~VR~aA~~al 165 (165)
...-.-...++.+++.+.+ + ++.||..|+.+|
T Consensus 298 ~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 2111124477888888875 3 379999887664
No 86
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.22 E-value=0.026 Score=44.98 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=50.9
Q ss_pred chhhHHHHHHHHHHHHcCCcchhhHHHHHhh-hcccCchHHHHHHHHHHHHhhc--CCcchhchHhHHHHHHHHHhhcCC
Q psy12576 76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNA-NIEHADWRHRDAALMSFGAILV--RPSFIITISERNFIMEVVCEATQS 152 (165)
Q Consensus 76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~-~l~~~dw~~R~Aa~~Alg~i~E--G~~~~~~~~~l~~il~~v~~~l~D 152 (165)
+.+..|.. .|++. . -.+.+++++.+ ...++.|+.|+.+-++|+-++. |+. ..++.+..-++|
T Consensus 86 eVR~~Av~---lLg~~-~--~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---------~~l~~~~~W~~d 150 (240)
T 3l9t_A 86 QVRMYAVF---LFGYL-S--KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---------KALPIIDEWLKS 150 (240)
T ss_dssp HHHHHHHH---HHHHT-T--TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---------TTHHHHHHHHHC
T ss_pred HHHHHHHH---HHHhc-c--CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHhcC
Confidence 55555554 34444 2 34778888887 6668889999999889987774 332 135566667778
Q ss_pred CCHHHHHHHHhc
Q psy12576 153 PDTQIRVAALQC 164 (165)
Q Consensus 153 ~~p~VR~aA~~a 164 (165)
+|+.||.+|...
T Consensus 151 ~n~~VRR~Ase~ 162 (240)
T 3l9t_A 151 SNLHTRRAATEG 162 (240)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 888888888764
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.22 E-value=0.03 Score=46.51 Aligned_cols=106 Identities=15% Similarity=0.055 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-C--cch--hhHHHHHhhhcccCch----HHHHHHHHHHH
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-E--DMV--PHILPFVNANIEHADW----RHRDAALMSFG 124 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~--~i~--~~vl~~i~~~l~~~dw----~~R~Aa~~Alg 124 (165)
..+|.|+++|.+.. +....+.|..+|-.||...+ . .+. .-.+|.+.+.+.+.+. ..++.|..+|.
T Consensus 170 G~Ip~Lv~lL~~~~------~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~ 243 (354)
T 3nmw_A 170 GSVKALMECALEVK------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243 (354)
T ss_dssp THHHHHHHHHHHCC------CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCC------CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHH
Confidence 45677777655322 13556777788888887543 2 232 3466666666665432 57888999999
Q ss_pred Hhhc---CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 125 AILV---RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 125 ~i~E---G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.++- |..+....-.-...+|.+++.|.+++..||..|+-+|
T Consensus 244 nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 287 (354)
T 3nmw_A 244 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287 (354)
T ss_dssp HHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHH
Confidence 9886 5555322111245789999999999999999987654
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.041 Score=43.41 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHcCCc---------chhhHHHHHh-hhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHH
Q psy12576 78 CKAAGVCLMLLSSCCEED---------MVPHILPFVN-ANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVC 147 (165)
Q Consensus 78 ~~~a~~~Ld~la~~~~~~---------i~~~vl~~i~-~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~ 147 (165)
...|..||..++..++.. .+..++|.+- +.+.+...+.|.+|+-++-.+++.+.. ...+++.++
T Consensus 72 ~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~------~~~~~e~l~ 145 (278)
T 4ffb_C 72 QEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS------ITQSVELVI 145 (278)
T ss_dssp HHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS------SHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc------HHHHHHHHH
Confidence 455667777777766521 3455666554 458999999999999999888876643 445678889
Q ss_pred hhcCCCCHHHHHHHHhcC
Q psy12576 148 EATQSPDTQIRVAALQCL 165 (165)
Q Consensus 148 ~~l~D~~p~VR~aA~~al 165 (165)
.++++.+|+||.+++..|
T Consensus 146 ~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 146 PFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp GGGGCSCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 999999999999987653
No 89
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.17 E-value=0.018 Score=54.05 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576 77 PCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT 155 (165)
Q Consensus 77 ~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p 155 (165)
.+++|..+|..++ .|+ +.+|.++. -...+.||..|++|.+|+|-+.-|-.. +.++..+.+.+.|++.
T Consensus 594 VRraAViaLGlI~--~g~~e~v~rlv~---~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~ 661 (963)
T 4ady_A 594 VRRAAVIALGFVL--LRDYTTVPRIVQ---LLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVD 661 (963)
T ss_dssp HHHHHHHHHHHHT--SSSCSSHHHHTT---TGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHhhc--cCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCH
Confidence 5555554444432 332 34444443 344578999999999999999866543 3445666666789999
Q ss_pred HHHHHHHhcC
Q psy12576 156 QIRVAALQCL 165 (165)
Q Consensus 156 ~VR~aA~~al 165 (165)
.||.+|+.+|
T Consensus 662 ~Vrq~Ai~AL 671 (963)
T 4ady_A 662 FVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 90
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.95 E-value=0.097 Score=45.10 Aligned_cols=106 Identities=16% Similarity=0.061 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch--hhHHHHHhhhcccCc---h-HHHHHHHHHHH
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV--PHILPFVNANIEHAD---W-RHRDAALMSFG 124 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~--~~vl~~i~~~l~~~d---w-~~R~Aa~~Alg 124 (165)
..+|.|+++|.... +....+.|..+|-.|+...++ .+. .-.+|.+.+.+.+.+ | ..++.|..+|.
T Consensus 286 GaI~~LV~lLl~s~------~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~ 359 (458)
T 3nmz_A 286 GSVKALMECALEVK------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 359 (458)
T ss_dssp THHHHHHHHHTTCC------SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCC------CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 45777777765432 235667788889999885532 232 345666666665443 2 47888999999
Q ss_pred Hhhc---CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 125 AILV---RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 125 ~i~E---G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.++- |..+....-.-...+|.+++.|.+++..||..|+.+|
T Consensus 360 nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 360 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence 9886 5555322111246789999999999999999987654
No 91
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.52 E-value=0.014 Score=55.40 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC----cchhhHHHHHhhhcccC---chHHHHHH--HHHHH
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE----DMVPHILPFVNANIEHA---DWRHRDAA--LMSFG 124 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~----~i~~~vl~~i~~~l~~~---dw~~R~Aa--~~Alg 124 (165)
.....+++.+.++-.. +.-.|....++.=++..+|.+..+ ..+|.+++++-....++ |-+.+.|+ ++.+|
T Consensus 473 ~~~~i~~~~l~~~~~~-~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlg 551 (1073)
T 3gjx_A 473 DTEIIMTKKLQNQVNG-TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVG 551 (1073)
T ss_dssp HHHHHHHHHHHHHHTS-CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHh
Confidence 4556666666643111 122488889999999999877762 57888888887655443 34444444 35888
Q ss_pred HhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 125 AILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 125 ~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.-.+....+ .++++.++..+++.+.++++.|+.||+.|+
T Consensus 552 rY~~wl~~h--~~~L~~vl~~L~~~m~~~~~~vq~aA~~af 590 (1073)
T 3gjx_A 552 QYPRFLRAH--WKFLKTVVNKLFEFMHETHDGVQDMACDTF 590 (1073)
T ss_dssp HCHHHHHHC--HHHHHHHHHHHHHHTTCCSTTHHHHHHHHH
T ss_pred hhHHHHHhC--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 877766543 457999999999999999999999999874
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.47 E-value=0.097 Score=41.96 Aligned_cols=128 Identities=14% Similarity=0.123 Sum_probs=89.5
Q ss_pred CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576 2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA 81 (165)
Q Consensus 2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a 81 (165)
+++||.+++.|+.-..++-+. .|.. ...|. .+...+...+.+++ + -...-+
T Consensus 85 k~~dEkval~A~r~L~~LLe~----------------vpL~-~~~y~-----Kl~~aL~dlik~~~------~-il~~ea 135 (265)
T 3b2a_A 85 SQENEKVTIKALRALGYLVKD----------------VPMG-SKTFL-----KAAKTLVSLLESPD------D-MMRIET 135 (265)
T ss_dssp CSTTHHHHHHHHHHHHHHHTT----------------CCBC-HHHHH-----HHHHHHHHHTTSCC------H-HHHHHH
T ss_pred hccchhHHHHHHHHHHHHHcC----------------CCCC-HHHHH-----HHHHHHHHHhcCCC------c-hHHHHH
Confidence 578999999999999999974 2221 12244 47777888887543 1 111222
Q ss_pred HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576 82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161 (165)
Q Consensus 82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA 161 (165)
+..|+-+ -.-...+-+..++..-+.|.|.+.+-||+-+|-.|+-.-.+. ..++.|+.-|-..++.++|-++.-|
T Consensus 136 ae~Lgkl---kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~---~i~~~I~~eI~elL~~eD~~l~e~a 209 (265)
T 3b2a_A 136 IDVLSKL---QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS---GHLTLILDEIPSLLQNDNEFIVELA 209 (265)
T ss_dssp HHHHHHC---CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC---CCGGGTTTTHHHHHTCSCHHHHHHH
T ss_pred HHHhCcC---CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH---HHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3333333 223567889999999999999999999999999998655442 2466666777777888899999988
Q ss_pred Hhc
Q psy12576 162 LQC 164 (165)
Q Consensus 162 ~~a 164 (165)
+.+
T Consensus 210 Ld~ 212 (265)
T 3b2a_A 210 LDV 212 (265)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 93
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=94.83 E-value=0.16 Score=39.74 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=46.4
Q ss_pred cCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576 72 EDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ 151 (165)
Q Consensus 72 ddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~ 151 (165)
||-|++.+.|...|..++...|+-+-|.+-.++.-.-.|+--..-.+---+||.++. ++...+..++|++.....
T Consensus 43 DDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~-----i~Pe~v~~vVp~lfanyr 117 (253)
T 2db0_A 43 DDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-----EKPELVKSMIPVLFANYR 117 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-----hCHHHHHhhHHHHHHHHh
Confidence 357999999999999999988864333333333322233333333444456666653 233345555666555554
Q ss_pred CCCHHHH
Q psy12576 152 SPDTQIR 158 (165)
Q Consensus 152 D~~p~VR 158 (165)
=.+|+.|
T Consensus 118 igd~kik 124 (253)
T 2db0_A 118 IGDEKTK 124 (253)
T ss_dssp CCSHHHH
T ss_pred cCCccce
Confidence 3344444
No 94
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=94.55 E-value=0.071 Score=47.46 Aligned_cols=104 Identities=12% Similarity=-0.009 Sum_probs=69.8
Q ss_pred HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchh-hHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVP-HILPFVNANIEHADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~-~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~ 130 (165)
-+|.|+++|...+ -.....|+.+|..|+..-.+ .|.. -.+|.+...|.+++...|+.|+.||+.|+-|.
T Consensus 49 ~i~~LV~~L~s~~-------~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 49 ELPEVIAMLGFRL-------DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CHHHHHHHTTCSC-------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 4677778776422 23455666778877753321 2332 25677777888999999999999999999874
Q ss_pred cc-hhchHhHHHHHHHHHhhcCC-CCHHHHHHHHhcC
Q psy12576 131 SF-IITISERNFIMEVVCEATQS-PDTQIRVAALQCL 165 (165)
Q Consensus 131 ~~-~~~~~~l~~il~~v~~~l~D-~~p~VR~aA~~al 165 (165)
+. ....---...+|.+++.|.+ +++.+|..|..||
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL 158 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTL 158 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 33 22211234678888888885 6788888876543
No 95
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.43 E-value=0.062 Score=45.59 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=50.3
Q ss_pred HHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 101 LPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 101 l~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
+|.+...+.++++..|..|..+|+.++.+-......-.-...+|.+++.|.++++.||..|+.+|
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL 68 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGAL 68 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555677788999999999999999976544221223467799999999999999999998764
No 96
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.15 E-value=0.16 Score=47.93 Aligned_cols=98 Identities=12% Similarity=0.232 Sum_probs=77.3
Q ss_pred HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---chhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MVPHILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
+...++|.|++.|.... .|....+|..+|+.|+...++. -+|.++|.+.+.+-+.-....+||.-++-.++
T Consensus 130 a~~~~~~~~~~~~~~~~------kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 130 AIKALLPHLTNAIVETN------KWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp GHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcccc------chHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence 44578888888886432 4999999999999999988854 57999999999999999999999999998887
Q ss_pred cCCcchhchHhHHHHHHHHHhhcCCCCHHHHH
Q psy12576 128 VRPSFIITISERNFIMEVVCEATQSPDTQIRV 159 (165)
Q Consensus 128 EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~ 159 (165)
.-.+.. -+..++|.+++.+.+|+. |-.
T Consensus 204 ~~~~n~----d~~~~~~~~~~~~~~p~~-~~~ 230 (986)
T 2iw3_A 204 ETVDNK----DIERFIPSLIQCIADPTE-VPE 230 (986)
T ss_dssp GGCCCT----TTGGGHHHHHHHHHCTTH-HHH
T ss_pred hcCCCc----chhhhHHHHHHHhcChhh-hHH
Confidence 544432 366677888888888854 443
No 97
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=94.01 E-value=0.048 Score=51.43 Aligned_cols=89 Identities=11% Similarity=0.003 Sum_probs=62.3
Q ss_pred CchhhHHHHHHHHHHHHc-C-CcchhhHHHHHhhhcc-----------cCchHHHHHHHHHHHHhhcCCcchh-chHhHH
Q psy12576 75 WNPCKAAGVCLMLLSSCC-E-EDMVPHILPFVNANIE-----------HADWRHRDAALMSFGAILVRPSFII-TISERN 140 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~-~-~~i~~~vl~~i~~~l~-----------~~dw~~R~Aa~~Alg~i~EG~~~~~-~~~~l~ 140 (165)
-.++..|+.+|.-|-.+. + ..+-+.+..|...... +.+-..|+||+++||++.....=.+ ..+.+|
T Consensus 858 ~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P 937 (997)
T 1vsy_5 858 VEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIP 937 (997)
T ss_dssp HHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccH
Confidence 358999999999888777 5 2233333333333322 1222689999999999998654322 256899
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 141 FIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 141 ~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.++..+++.+.||.| |+.++-.+
T Consensus 938 ~~l~~La~~~~~~~~-i~~tvk~t 960 (997)
T 1vsy_5 938 KNLSNLSSWARTSGM-TGNAAKNT 960 (997)
T ss_dssp HHHHHHHTTSSSCSS-HHHHTHHH
T ss_pred HHHHHHHHHhCCCCc-hHHHHHHH
Confidence 999999999999988 88776544
No 98
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.80 E-value=0.071 Score=41.95 Aligned_cols=67 Identities=10% Similarity=-0.067 Sum_probs=49.7
Q ss_pred hHHHHHhhhcccCch--HHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 99 HILPFVNANIEHADW--RHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 99 ~vl~~i~~~l~~~dw--~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
..+|.+.+.+++++. ..+..|..++..++.+-.+....-.-...+|.+++.|.++++.||..|+.+|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL 76 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGAL 76 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345666678888887 7777788899999876544322212345679999999999999999998764
No 99
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.39 E-value=0.23 Score=46.70 Aligned_cols=87 Identities=9% Similarity=0.049 Sum_probs=63.3
Q ss_pred CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC-
Q psy12576 74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS- 152 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D- 152 (165)
++..+.+|.-+|..+.-.-| .+.++..+.....+++...|++|+.|||-|+-|...... +.+..++..+.+...|
T Consensus 625 d~~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~-~rva~~l~~L~~~~~dk 700 (963)
T 4ady_A 625 NAHVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN-PQVADINKNFLSVITNK 700 (963)
T ss_dssp CHHHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTC-TTHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccc-hHHHHHHHHHHHHHhcc
Confidence 57888888877776653333 355566666677899999999999999999999887532 3466667766666655
Q ss_pred -CCHHHHHHHHhc
Q psy12576 153 -PDTQIRVAALQC 164 (165)
Q Consensus 153 -~~p~VR~aA~~a 164 (165)
.++.+|..|..|
T Consensus 701 ~~d~~~~fga~iA 713 (963)
T 4ady_A 701 HQEGLAKFGACVA 713 (963)
T ss_dssp SSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHH
Confidence 567788777644
No 100
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.30 E-value=0.34 Score=38.47 Aligned_cols=87 Identities=13% Similarity=0.199 Sum_probs=62.3
Q ss_pred cCCCchhhHHHHHHHHHHH-HcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576 72 EDDWNPCKAAGVCLMLLSS-CCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT 150 (165)
Q Consensus 72 ddew~~~~~a~~~Ld~la~-~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l 150 (165)
|+.|.+...++.+++.+.. .-++. +++.+.....+++...|++|+-..---+... ..+...+.++|.+-+..
T Consensus 115 D~~WrVre~lA~a~~~~~~~~~pe~----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~---~~k~dp~~ll~iL~~L~ 187 (240)
T 3l9t_A 115 DNNWRVQEVLAKAFDEFCKKIEYKK----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRP---YFKENPNEAIRRIADLK 187 (240)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCTTT----THHHHHHHHHCSSHHHHHHHHHHTCSGGGST---TTTTCHHHHHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHHHHhcCHHH----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccc---hhhcCHHHHHHHHHHhc
Confidence 3469999998889988886 44454 4455667788999889988877653211111 23345788999888888
Q ss_pred CCCCHHHHHHHHhcC
Q psy12576 151 QSPDTQIRVAALQCL 165 (165)
Q Consensus 151 ~D~~p~VR~aA~~al 165 (165)
.|++.-||.+-.++|
T Consensus 188 ~D~s~yVrKSVan~L 202 (240)
T 3l9t_A 188 EDVSEYVRKSVGNAL 202 (240)
T ss_dssp TCSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 899999999876653
No 101
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=93.06 E-value=0.37 Score=42.80 Aligned_cols=105 Identities=15% Similarity=0.055 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc--chhhHHHHHhhhcccC--------chHHHHHHHHHH
Q psy12576 54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED--MVPHILPFVNANIEHA--------DWRHRDAALMSF 123 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~--i~~~vl~~i~~~l~~~--------dw~~R~Aa~~Al 123 (165)
..+|.|+++|...+ ....+.|..+|..|+..-..+ |-..++|-+...|.++ .-..+.+|+.++
T Consensus 355 ~glp~Lv~LL~s~~-------~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL 427 (584)
T 3l6x_A 355 KALSAIADLLTNEH-------ERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427 (584)
T ss_dssp HHHHHHHHGGGCSC-------HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCC-------HHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence 55788888886432 367788899999999866532 3234556666666654 234678899999
Q ss_pred HHhhcCCcchhchHhHHHHHHHHHhhcCCC--CHHHHHHHHhcC
Q psy12576 124 GAILVRPSFIITISERNFIMEVVCEATQSP--DTQIRVAALQCL 165 (165)
Q Consensus 124 g~i~EG~~~~~~~~~l~~il~~v~~~l~D~--~p~VR~aA~~al 165 (165)
+.|.-|-......-.-...+|.+++.+.+. .++++.+|+.+|
T Consensus 428 ~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL 471 (584)
T 3l6x_A 428 NEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVL 471 (584)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHH
Confidence 999877555332222356788888888875 889999887653
No 102
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=92.91 E-value=0.35 Score=44.45 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhccCCCC-----CcCCCc--hhhHHHHHHHHHHHHcC-------Ccchh--hHHHHHhhhcccCchHHHH
Q psy12576 54 YLVPILTQKLTKQEELD-----DEDDWN--PCKAAGVCLMLLSSCCE-------EDMVP--HILPFVNANIEHADWRHRD 117 (165)
Q Consensus 54 ~l~p~ll~~l~~~~ed~-----dddew~--~~~~a~~~Ld~la~~~~-------~~i~~--~vl~~i~~~l~~~dw~~R~ 117 (165)
..+|.|+++|....+.+ +++..+ ...-|..+|..||..=+ ..|+. -.+|.+.+.+.+++...|+
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vrr 624 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHH
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHH
Confidence 34577888776211111 112222 24567788888887641 23665 3899999999999999999
Q ss_pred HHHHHHHHhhcCCcc---hhchHhHHH---HHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 118 AALMSFGAILVRPSF---IITISERNF---IMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 118 Aa~~Alg~i~EG~~~---~~~~~~l~~---il~~v~~~l~D~~p~VR~aA~~al 165 (165)
||+.++++++..+.. .+....-+. =++.++..+...++.+|.||.-+|
T Consensus 625 AA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagAL 678 (778)
T 3opb_A 625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF 678 (778)
T ss_dssp HHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999975542 111111111 277788888999999999998653
No 103
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=92.64 E-value=1.8 Score=39.86 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=79.6
Q ss_pred cHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC---CcchhhHHHHHhhhccc---CchHHHH
Q psy12576 44 SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE---EDMVPHILPFVNANIEH---ADWRHRD 117 (165)
Q Consensus 44 ~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~---~~i~~~vl~~i~~~l~~---~dw~~R~ 117 (165)
.....+.....+.|+++..|-..+ -.....+..||..||..-| +.|+|.++..+...+.+ .+.+.-.
T Consensus 329 t~~~~~~fV~~l~p~~~~g~fSK~-------~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~ 401 (799)
T 1vsy_4 329 TSFCHEEIVEIFLNIISLGSQNKN-------PDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRII 401 (799)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSS-------HHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCC-------cchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHH
Confidence 444555566778899888888654 3555778899999999999 89999999999999988 7777779
Q ss_pred HHHHHHHHhhcCCcc-hhchHhHHHHHHHHHhhcCCCCH
Q psy12576 118 AALMSFGAILVRPSF-IITISERNFIMEVVCEATQSPDT 155 (165)
Q Consensus 118 Aa~~Alg~i~EG~~~-~~~~~~l~~il~~v~~~l~D~~p 155 (165)
+|+.+|..++--... .....|+..+|...++++.-++|
T Consensus 402 ~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~ 440 (799)
T 1vsy_4 402 SSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDT 440 (799)
T ss_dssp HHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCH
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccH
Confidence 999999977732222 11234888999999999864444
No 104
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.34 E-value=0.11 Score=41.15 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=27.1
Q ss_pred hhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 106 ANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 106 ~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
..+.+++|..|.+++-.+ . .+.+...+.|+++.||.++...+
T Consensus 177 ~ll~D~d~~VR~aaa~~l-------~-----------~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 177 LMTQDPEPEVRRIVASRL-------R-----------GDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp GSTTCSSHHHHHHHHHHC-------C-----------GGGGGGGGGCSSHHHHHHHHHHS
T ss_pred HHHcCCCHHHHHHHHHhC-------C-----------HHHHHHHHcCCCHHHHHHHHHcC
Confidence 455677777776666542 0 13455567888999988887653
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.86 E-value=0.61 Score=37.45 Aligned_cols=90 Identities=11% Similarity=0.015 Sum_probs=60.9
Q ss_pred CchhhHHHHHHHHHHHHcCCcc---hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc---hhchHhHHHHHHHHHh
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDM---VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF---IITISERNFIMEVVCE 148 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i---~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~---~~~~~~l~~il~~v~~ 148 (165)
|..+.+|...|...-...++.+ +..++.++.-.+.+.+...-..++-.+..+.+-..+ .+...+...++|.++.
T Consensus 60 ~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lve 139 (266)
T 2of3_A 60 FKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLL 139 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 7544444433333332233333 344688887777788888888888888887653332 2444467899999999
Q ss_pred hcCCCCHHHHHHHHhc
Q psy12576 149 ATQSPDTQIRVAALQC 164 (165)
Q Consensus 149 ~l~D~~p~VR~aA~~a 164 (165)
.+.|+..+||.++-..
T Consensus 140 KlGd~k~~vR~~~r~i 155 (266)
T 2of3_A 140 KTGEAKDNMRTSVRDI 155 (266)
T ss_dssp GGGCSSHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHH
Confidence 9999999999998654
No 106
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=91.21 E-value=0.46 Score=36.53 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=60.2
Q ss_pred HHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccC--chHHHHHHHH
Q psy12576 47 YAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHA--DWRHRDAALM 121 (165)
Q Consensus 47 ~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~--dw~~R~Aa~~ 121 (165)
++..++..|+|.++.++....-..+ ..+..|+..|..+...+|+ .+-|.++....+.+.++ ....+++|+.
T Consensus 80 ~lepYlH~LipsvLtCll~k~l~~~----~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~ 155 (196)
T 4atg_A 80 FIDPYLHQILPSLLTCVIGKSIVDD----DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALY 155 (196)
T ss_dssp CCGGGHHHHHHHHHHHHHCTTCCCH----HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcccCHH----HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 4666777899999999986432211 6899999999999999984 46677777777777654 5788899999
Q ss_pred HHHHhhc
Q psy12576 122 SFGAILV 128 (165)
Q Consensus 122 Alg~i~E 128 (165)
+|++++.
T Consensus 156 GL~~lG~ 162 (196)
T 4atg_A 156 CLSILSK 162 (196)
T ss_dssp HHHHHCH
T ss_pred HHHHhHH
Confidence 9999875
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=90.55 E-value=0.22 Score=44.58 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=62.1
Q ss_pred HHHHHHHHH-hhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---------cchhhHHHHHhhh---cccCc--------
Q psy12576 54 YLVPILTQK-LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---------DMVPHILPFVNAN---IEHAD-------- 112 (165)
Q Consensus 54 ~l~p~ll~~-l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---------~i~~~vl~~i~~~---l~~~d-------- 112 (165)
.+++.++.. |.+. +-..+.+|..+|..|+..-|. .|+++++.++.+. +....
T Consensus 75 ~~v~~ll~~lL~D~-------~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~ 147 (684)
T 4gmo_A 75 QVVHIVLTETLTDN-------NIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLK 147 (684)
T ss_dssp THHHHHHHTTTTCS-------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCH
T ss_pred CCHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccH
Confidence 566655554 4321 236788899999999988762 2667766665432 21111
Q ss_pred ------hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC--C-CCHHHHHHHHhcC
Q psy12576 113 ------WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ--S-PDTQIRVAALQCL 165 (165)
Q Consensus 113 ------w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~--D-~~p~VR~aA~~al 165 (165)
|..-.-.+-+|.+++||-.+....-.....++.++..|. | -...|+.+|++||
T Consensus 148 ~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L 209 (684)
T 4gmo_A 148 AQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCL 209 (684)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 223344667888899987763211112345555556553 2 2367999999885
No 108
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=88.27 E-value=1.1 Score=35.93 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=63.6
Q ss_pred CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576 74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP 153 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~ 153 (165)
.|...++.. +++...+ .+..+.+.+.+.|...|..++.+++-+..+..+......++.+++.+++.+.++
T Consensus 18 sWkiK~a~e-----la~~~e~-----~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~ 87 (265)
T 3b2a_A 18 SWQILDAVS-----LALEDKR-----ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE 87 (265)
T ss_dssp TTCHHHHHH-----HHHHCHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST
T ss_pred HhhHHHHHH-----HHHhchh-----HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc
Confidence 388776654 2233332 344445566889999999999999999998877666668999999999999999
Q ss_pred CHHHHHHHHhcC
Q psy12576 154 DTQIRVAALQCL 165 (165)
Q Consensus 154 ~p~VR~aA~~al 165 (165)
+-+|---|+.||
T Consensus 88 dEkval~A~r~L 99 (265)
T 3b2a_A 88 NEKVTIKALRAL 99 (265)
T ss_dssp THHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 999998888774
No 109
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=87.59 E-value=1.3 Score=34.41 Aligned_cols=67 Identities=12% Similarity=0.023 Sum_probs=48.9
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHh-hcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAI-LVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i-~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
|...+++.+.+.|++-..|++|+...+.+ +.-.........++.++..+...+.|++..||.|.--+
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~ 174 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNF 174 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHH
Confidence 55778888899999877788888843322 21222223456789999998889999999999998654
No 110
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=87.20 E-value=1.1 Score=42.65 Aligned_cols=89 Identities=11% Similarity=0.036 Sum_probs=61.9
Q ss_pred CCchhhHHHHHHHHHHHHc-----CC----cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHH
Q psy12576 74 DWNPCKAAGVCLMLLSSCC-----EE----DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIME 144 (165)
Q Consensus 74 ew~~~~~a~~~Ld~la~~~-----~~----~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~ 144 (165)
.|....+....++.++..+ .+ .++|.+++.+.+. ...++..|...+.++|...+..+. ...+++.+++
T Consensus 499 ~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~-~~~~p~l~~~~i~~l~~l~~~~~~--~p~~L~~vL~ 575 (1204)
T 3a6p_A 499 SFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNF-DTKDPLILSCVLTNVSALFPFVTY--RPEFLPQVFS 575 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHGGGGGT--CGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHHHhc--CchHHHHHHH
Confidence 3555566666777776555 11 2456666654331 235888999999999999987664 3457899999
Q ss_pred HHHhhcCCC------------CHHHHHHHHhcC
Q psy12576 145 VVCEATQSP------------DTQIRVAALQCL 165 (165)
Q Consensus 145 ~v~~~l~D~------------~p~VR~aA~~al 165 (165)
.++.++.|+ +.+||.+|+.|+
T Consensus 576 ~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al 608 (1204)
T 3a6p_A 576 KLFSSVTFETVEESKAPRTRAVRNVRRHACSSI 608 (1204)
T ss_dssp HHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCcccccccccHHHHHHHHHHHHHH
Confidence 999888772 348999998764
No 111
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=82.39 E-value=2.1 Score=40.32 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHH-------cCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576 78 CKAAGVCLMLLSSC-------CEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT 150 (165)
Q Consensus 78 ~~~a~~~Ld~la~~-------~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l 150 (165)
...+.-++..|... ++..+++.+..++.+.+.+.+-..+..++.|||+++-.- -++.+++++ ++.
T Consensus 412 ~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~-------~l~~l~~~l-~~~ 483 (1056)
T 1lsh_A 412 RKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPN-------SIKKIQRFL-PGQ 483 (1056)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGG-------GHHHHHTTS-TTS
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChh-------HHHHHHHhh-cCc
Confidence 34455555555432 233568888888888888888888999999999998621 244444442 222
Q ss_pred ----CCCCHHHHHHHHhcC
Q psy12576 151 ----QSPDTQIRVAALQCL 165 (165)
Q Consensus 151 ----~D~~p~VR~aA~~al 165 (165)
.+..+|||.+|+.||
T Consensus 484 ~~~~~~~~~rvr~aAi~AL 502 (1056)
T 1lsh_A 484 GKSLDEYSTRVQAEAIMAL 502 (1056)
T ss_dssp SSCCCCSCHHHHHHHHHTT
T ss_pred cccccccchHHHHHHHHHH
Confidence 244578999998876
No 112
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=79.99 E-value=2 Score=38.69 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=49.0
Q ss_pred HHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhH--HHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 101 LPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISER--NFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 101 l~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l--~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
++.+-..+.+.+.+.|..++..|.+++.+......+..+ +.-++.++..|.|++..||..|+.
T Consensus 124 i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall 188 (651)
T 3grl_A 124 VTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188 (651)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence 444455678899999999999999999877663222223 467889999999999999998864
No 113
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=78.15 E-value=6.1 Score=28.57 Aligned_cols=88 Identities=10% Similarity=0.008 Sum_probs=53.6
Q ss_pred CCCchhhHHHHHHHHHHHHc---CCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhh-cCCcchhchHhHH--HHHHHH
Q psy12576 73 DDWNPCKAAGVCLMLLSSCC---EEDMVPHILPFVNANIEHADWRHRDAALMSFGAIL-VRPSFIITISERN--FIMEVV 146 (165)
Q Consensus 73 dew~~~~~a~~~Ld~la~~~---~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~-EG~~~~~~~~~l~--~il~~v 146 (165)
|+|.+.. ..+.-||+.. +...+..++.++-+.|.+..|+...=|+..|-.++ .|...+... .+. .++..+
T Consensus 23 d~~~~pg---ylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~-~r~~~~~Ik~l 98 (140)
T 1vdy_A 23 EDKVAPV---YKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRRE-MQRNSVAVRNL 98 (140)
T ss_dssp CSSCCCH---HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHH-HHHTTHHHHTT
T ss_pred CCCCCcH---HHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHH-HHHhHHHHHHH
Confidence 3575442 3355555553 33567899999999999999998877888877766 676554322 121 222322
Q ss_pred Hhh--cCC------CCHHHHHHHHhc
Q psy12576 147 CEA--TQS------PDTQIRVAALQC 164 (165)
Q Consensus 147 ~~~--l~D------~~p~VR~aA~~a 164 (165)
.+. ..| +...||.+|-++
T Consensus 99 ~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 99 FHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp TTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred HhcCCCCCcccccchhHHHHHHHHHH
Confidence 111 112 238999999764
No 114
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=74.40 E-value=7.6 Score=35.14 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-C---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-E---DMVPHILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
+.|+..+-+.|...| |-+.+.+ ..++.||..+. . ...|.++|-+-+.+.|+-...|.|.+-++-.++
T Consensus 333 ~~LL~iLWd~L~~LD------DLSASTg--SVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL- 403 (800)
T 3oc3_A 333 DLVLEKCWKNIESEE------LISVSKT--SNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS- 403 (800)
T ss_dssp HHHHHHHHHHHHTCC------SCCTTHH--HHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHhhhhc------ccchhhH--HHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-
Confidence 445566666666442 2454444 44888877543 1 233556666666778888899999999998777
Q ss_pred CCcchhchHhHHHHHHHHHhhc-CCCCHHHHHHHHh
Q psy12576 129 RPSFIITISERNFIMEVVCEAT-QSPDTQIRVAALQ 163 (165)
Q Consensus 129 G~~~~~~~~~l~~il~~v~~~l-~D~~p~VR~aA~~ 163 (165)
...+++.|.+.+ -.+++.||..+.+
T Consensus 404 ----------~~~~LRLIFQNILLE~neeIl~lS~~ 429 (800)
T 3oc3_A 404 ----------EESIDFLVAEVVLIEEKDEIREMAIK 429 (800)
T ss_dssp ----------CHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred ----------hhhHHHHHHHHHHhCCcHHHHHHHHH
Confidence 334566666664 4899999988765
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=73.08 E-value=24 Score=27.77 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=46.8
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.++|.+++-+-+...+++-..|+..+=-++ |-|.++ ......+++.+...++|++|.|-..|.+|
T Consensus 49 ~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~---e~~~~k--~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~ 113 (257)
T 3gs3_A 49 ELAEEFLESVLSLAHDSNMEVRKQVVAFVE---QVCKVK--VELLPHVINVVSMLLRDNSAQVIKRVIQA 113 (257)
T ss_dssp GGHHHHHHHHHGGGGCSCHHHHHHHHHHHH---HHHHHC--GGGHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 577777777777666777777765554444 334432 34688999998899999999999888765
No 116
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=72.86 E-value=28 Score=28.47 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=70.3
Q ss_pred HhHHHHHHHHHhhc--cCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcc---cCchHHHHHHHHHH
Q psy12576 52 LQYLVPILTQKLTK--QEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIE---HADWRHRDAALMSF 123 (165)
Q Consensus 52 ~~~l~p~ll~~l~~--~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~---~~dw~~R~Aa~~Al 123 (165)
...++|.|++.+.. +.-.++-=|-..-...++.+..+...+.+ .|+..++.-.-+.+. ++-|.+|.+=..-+
T Consensus 67 ~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL 146 (321)
T 1w9c_A 67 AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLL 146 (321)
T ss_dssp HHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 45667777765552 11111111233344455566666555553 222333322222333 46688999999999
Q ss_pred HHhhcCCcchh---chHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 124 GAILVRPSFII---TISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 124 g~i~EG~~~~~---~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.+|..-|-+.. -......++..++-+.+++++.|-..+++.
T Consensus 147 ~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~i 190 (321)
T 1w9c_A 147 QAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQI 190 (321)
T ss_dssp HHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 99998887742 234578899999999999999999988765
No 117
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=71.93 E-value=13 Score=28.23 Aligned_cols=79 Identities=9% Similarity=0.128 Sum_probs=59.4
Q ss_pred HHHHHHHHHcC-CcchhhHHHHHhhhccc--CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC----CCCH
Q psy12576 83 VCLMLLSSCCE-EDMVPHILPFVNANIEH--ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ----SPDT 155 (165)
Q Consensus 83 ~~Ld~la~~~~-~~i~~~vl~~i~~~l~~--~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~----D~~p 155 (165)
.+|..|+..-| ..++|.+..||.+.+.. .|+..=..-+-...++..-..- ...+|+++++|.++..+- .+.
T Consensus 27 ~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l-~lepYlH~LipsvLtCll~k~l~~~- 104 (196)
T 4atg_A 27 IAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHV-FIDPYLHQILPSLLTCVIGKSIVDD- 104 (196)
T ss_dssp HHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTC-CCGGGHHHHHHHHHHHHHCTTCCCH-
T ss_pred HHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHHHHHHhcccCHH-
Confidence 45888999999 78999999999886643 3666666777777888887664 577899999999988862 222
Q ss_pred HHHHHHHh
Q psy12576 156 QIRVAALQ 163 (165)
Q Consensus 156 ~VR~aA~~ 163 (165)
.+|.-|..
T Consensus 105 ~LRd~AA~ 112 (196)
T 4atg_A 105 DVRKMSAD 112 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67766653
No 118
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=70.62 E-value=20 Score=27.13 Aligned_cols=58 Identities=9% Similarity=0.083 Sum_probs=40.7
Q ss_pred HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 100 ILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
+.+++.+.+.|++...|++|+.++ + ........+.+++.+-..+.|++--||.|-..+
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~--l-----~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~ 182 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQ--L-----MLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWS 182 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTT--T-----TCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH--H-----HHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 557788888888877777776633 2 112234567778877778899999999986543
No 119
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=64.25 E-value=44 Score=28.00 Aligned_cols=65 Identities=8% Similarity=-0.035 Sum_probs=49.4
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
.+++.+++.+-+.-.+++-..|+..+=.++-++ .. ....+..+++.+...+.|.++.|-..+.+|
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~---~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~ 123 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEAC---KR--DIELLLKLIANLNMLLRDENVNVVKKAILT 123 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHH---HH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578888888888888888888877665555443 32 234678889988888899999998888765
No 120
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=61.41 E-value=7.6 Score=29.84 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=38.1
Q ss_pred HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 100 ILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
+++++.+.+.|++...|++|+..+ +.- ........+.+.+...+.|++--||.|..-+
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~-----~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~ 189 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQ--LKY-----KQKMDEELLFWIIGQLHSSKEFFIQKAIGWV 189 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTT--TTC-----GGGCCHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHH--HHH-----HhCCCHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445667777788766666666543 111 1222455677777788899999999987544
No 121
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=58.85 E-value=26 Score=32.95 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=44.3
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc-CCcch-h-chHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILV-RPSFI-I-TISERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E-G~~~~-~-~~~~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
+++..+.+++...-...++..|+++++++|++.- .|... . ....++.+...+.+++...+..-+..++.|
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~Lka 463 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKA 463 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 5666677777655455678899999999998884 22211 1 112356666666677766666555555544
No 122
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=44.06 E-value=87 Score=25.83 Aligned_cols=65 Identities=9% Similarity=0.154 Sum_probs=52.0
Q ss_pred hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch-hchHhH--HHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 99 HILPFVNANIEHADWRHRDAALMSFGAILVRPSFI-ITISER--NFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 99 ~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l--~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
.++....+.++|++.--|+=++.-||-++-..+-. ++..|+ +.=+..+.+.|+|+...||.-|++
T Consensus 209 ~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFh 276 (341)
T 1upk_A 209 RFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFH 276 (341)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhh
Confidence 45556667889999999999999999999775542 344454 566788899999999999999986
No 123
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=43.78 E-value=70 Score=27.86 Aligned_cols=41 Identities=10% Similarity=0.132 Sum_probs=21.3
Q ss_pred HHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576 87 LLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAIL 127 (165)
Q Consensus 87 ~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~ 127 (165)
-|...+-+.-++-+...+.+.++.++...+.+.=.+|-++.
T Consensus 88 ~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sll 128 (507)
T 3u0r_A 88 ELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIF 128 (507)
T ss_dssp HGGGGCCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 33333333445555555555666666666555555555554
No 124
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=40.76 E-value=41 Score=23.75 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=42.9
Q ss_pred hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhH--HHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 99 HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISER--NFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 99 ~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l--~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
.++..|.+.+.+.+++...-|+.-+-+.+.-|+..+.. ++ ..++..+.+.+..+++.||.-.+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~-evas~~Fl~el~~l~~~~~~~Vk~kil~ 107 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHL-EVCSRDFASEVSNVLNKGHPKVCEKLKA 107 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH-HHSSHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHH-HHhhHHHHHHHHHHhccCCHHHHHHHHH
Confidence 46778888999999888888888888888888763221 11 334444444444578899876654
No 125
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=39.26 E-value=70 Score=23.15 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=44.2
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc-----hHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT-----ISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~-----~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
..++..|.+.|.+.+++...-|+.-+-..+.-|+..+. +..++.++..+ . ...++.||.-++.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~-~--~~~~~~Vk~kil~ 118 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVI-K--NKAHPKVCEKLKS 118 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHH-H--TTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH-c--cCCCHHHHHHHHH
Confidence 34667888899999999888899999999988877432 22344444433 2 2367899987764
No 126
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=38.63 E-value=24 Score=25.42 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576 138 ERNFIMEVVCEATQSPDTQIRVAALQC 164 (165)
Q Consensus 138 ~l~~il~~v~~~l~D~~p~VR~aA~~a 164 (165)
..+.||+++.+.|++.+|+|.+=|+..
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~l 72 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRL 72 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHH
Confidence 358899999999999999999888764
No 127
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=36.74 E-value=71 Score=22.85 Aligned_cols=65 Identities=6% Similarity=0.009 Sum_probs=46.1
Q ss_pred hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc-hHhHHHHHHHHHhhcCC------CCHHHHHHHHh
Q psy12576 99 HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT-ISERNFIMEVVCEATQS------PDTQIRVAALQ 163 (165)
Q Consensus 99 ~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~-~~~l~~il~~v~~~l~D------~~p~VR~aA~~ 163 (165)
.++..+...+++.+++.-.-|+.-+-+.+.-|+..+. +---..++..+.+.+.+ +++.||.-.+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~ 119 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILE 119 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHH
Confidence 4677888999999999999999999999988887431 11124455555555543 67899876654
No 128
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=34.95 E-value=40 Score=25.78 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=39.0
Q ss_pred CCCchhhHHHHHHH-HHHHHc----CCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576 73 DDWNPCKAAGVCLM-LLSSCC----EEDMVPHILPFVNANIEHADWRHRDAALMSFGAILV 128 (165)
Q Consensus 73 dew~~~~~a~~~Ld-~la~~~----~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E 128 (165)
++|.. ++|-.+-. .++... .+.-++.++..+..++.++++..|+|.-.+|..++-
T Consensus 121 ~~w~r-R~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk 180 (235)
T 1t06_A 121 DELKM-SAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAI 180 (235)
T ss_dssp CHHHH-HHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Confidence 46774 45444221 344422 224578899999999999999999999999988774
No 129
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=33.78 E-value=90 Score=22.19 Aligned_cols=65 Identities=6% Similarity=0.015 Sum_probs=47.4
Q ss_pred hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhch-HhHHHHHHHHHhhcCC------CCHHHHHHHHh
Q psy12576 99 HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITI-SERNFIMEVVCEATQS------PDTQIRVAALQ 163 (165)
Q Consensus 99 ~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~-~~l~~il~~v~~~l~D------~~p~VR~aA~~ 163 (165)
.++..|.+.+++.+++...-|+.-+-+.+.-|+..+.. ---..++..+.+.+.+ .++.||.-++.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~ 109 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIE 109 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHH
Confidence 46677888999999999999999999999988874321 1125666666666553 47899987654
No 130
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=31.89 E-value=2.2e+02 Score=23.64 Aligned_cols=68 Identities=9% Similarity=0.103 Sum_probs=44.3
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhh--------cCCcc----hhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAIL--------VRPSF----IITISERNFIMEVVCEATQSPDTQIRVAAL 162 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~--------EG~~~----~~~~~~l~~il~~v~~~l~D~~p~VR~aA~ 162 (165)
+.++.+++.+...+.+++...-+.++.|+++|- .+... ...=..+..+-..|+....+.+.-||-+|+
T Consensus 96 el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ai 175 (386)
T 3o2t_A 96 ELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAI 175 (386)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 567888888888888888888888888877653 22211 111123555556666667777777887764
No 131
>1nig_A Hypothetical protein TA1238; structural genomics, four helixbundle, PSI, protein structur initiative; 2.00A {Thermoplasma acidophilum} SCOP: a.25.2.1
Probab=30.59 E-value=66 Score=22.93 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=28.6
Q ss_pred hHHH---HHHHHHHH-HhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576 113 WRHR---DAALMSFG-AILVRPSFIITISERNFIMEVVCEATQSPDTQ 156 (165)
Q Consensus 113 w~~R---~Aa~~Alg-~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~ 156 (165)
.++| +++.--+| +++||...... .++=.|+..+.+.|-||+..
T Consensus 21 FkfRsEIe~a~AflGLAvSEG~KV~E~-rE~lDilDtv~n~LyD~e~~ 67 (152)
T 1nig_A 21 FKFRSEIEAAEAYLGLAISEGIKVRET-REILDIIDTVYNSLSDPESK 67 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSHHHH-HHHHHHHHHHHHTTTC--CC
T ss_pred HHHHHHHHHHHHHHhHHhhccCCchhH-HHHHHHHHHHHHhccCchhH
Confidence 4455 45555555 78899986433 36778899999999999854
No 132
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=29.99 E-value=74 Score=23.23 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=11.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHH
Q psy12576 141 FIMEVVCEATQSPDTQIRVAAL 162 (165)
Q Consensus 141 ~il~~v~~~l~D~~p~VR~aA~ 162 (165)
..+..|.+.+++++|.|+..|+
T Consensus 50 ~A~ral~krl~~~n~~vql~AL 71 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQAL 71 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHH
Confidence 3444555555555555555554
No 133
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=29.94 E-value=56 Score=28.23 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 142 IMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 142 il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.=..|.+.+.++++.||+.|+.|+
T Consensus 448 ~K~~VM~Lm~h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 448 GKADIMELLNHSDSRVKYEALKAT 471 (480)
T ss_dssp HHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHH
Confidence 345677888999999999999874
No 134
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=27.40 E-value=1.5e+02 Score=26.84 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=45.9
Q ss_pred CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHH
Q psy12576 75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVV 146 (165)
Q Consensus 75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v 146 (165)
|+......+++..|..=-+ -=+...|.++...+ ++...|+=|+-.|... ++..+..||.++++.+
T Consensus 88 W~~~~e~~~a~~lL~~W~~-~~~~dALeLL~~~f--~~~~VR~yAV~~L~~~----~de~L~~YLlQLVQAL 152 (696)
T 2x6h_A 88 WKLEDEVTQALWMLANWAP-MDVEDALELLSPTF--THPQVRKYAVSRLAQA----PDEDLLLYLLQLVQAL 152 (696)
T ss_dssp TSCHHHHHHHHHHHHHSCC-CCHHHHHHHHSTTC--CCHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHhcCCC-CCHHHHHHHhcccC--CCHHHHHHHHHHHHhC----ChHHHHHHHHHHHHHH
Confidence 8777777778887776544 22566788888888 4667999999888875 3334555777777754
No 135
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.77 E-value=1.8e+02 Score=21.76 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=43.4
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchH-hHHHHHHHHHhhcC-CCCHHHHHHHHh
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITIS-ERNFIMEVVCEATQ-SPDTQIRVAALQ 163 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~-~l~~il~~v~~~l~-D~~p~VR~aA~~ 163 (165)
..++..|.+.|++.++....-|+.-|-+++.-|+..+... --..++..+.+.+. .+++.||.-++.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~ 108 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLE 108 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3466778889999999998899999999998887632110 01223333333332 678899986653
No 136
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=24.05 E-value=3.2e+02 Score=22.88 Aligned_cols=69 Identities=12% Similarity=0.006 Sum_probs=49.4
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~ 163 (165)
.+...++..+-.+---.+....-.=+-=++.|++.+.+....+....+...+.+.+.++|-.|-..|++
T Consensus 247 ~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~ 315 (403)
T 3fga_B 247 TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALY 315 (403)
T ss_dssp GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHG
T ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 345555555555444455445444444577899988876666678888999999999999999999875
No 137
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=23.69 E-value=1.4e+02 Score=21.69 Aligned_cols=66 Identities=6% Similarity=0.030 Sum_probs=45.2
Q ss_pred hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhch-HhHHHHHHHHHhhcC------CCCHHHHHHHHh
Q psy12576 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITI-SERNFIMEVVCEATQ------SPDTQIRVAALQ 163 (165)
Q Consensus 98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~-~~l~~il~~v~~~l~------D~~p~VR~aA~~ 163 (165)
..++..|.+.+++.+.+...-|+.-|-+++.-|+..+.. ---..++..+.+.+. ..++.||.-++.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~ 121 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIE 121 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHH
Confidence 346778889999999999999999999999888863221 111334444444443 246899987764
No 138
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=23.13 E-value=1.9e+02 Score=25.94 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhccc--CchHHHHHHHHHHHHhhcCC
Q psy12576 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH--ADWRHRDAALMSFGAILVRP 130 (165)
Q Consensus 53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~--~dw~~R~Aa~~Alg~i~EG~ 130 (165)
..-++.|...+...- --.-+++|...|-.+|..++..+-..-|+.+-.-++. .|--.-++++=.|..+..+-
T Consensus 20 ~etI~~L~~Rl~~~t------l~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 20 AETIQKLCDRVASST------LLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHHHCC------SHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHhhcc------chhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence 345777777776421 0123788888888888877765554444444444432 34455667777776655432
Q ss_pred cch-------------------hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576 131 SFI-------------------ITISERNFIMEVVCEATQSPDTQIRVAALQCL 165 (165)
Q Consensus 131 ~~~-------------------~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al 165 (165)
.+. ... ..+.-++.++..|+..+..||..|+++|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~-~~~~~i~~Ll~lL~~~df~vR~~alqlL 146 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFI-KQQENVTLLLSLLEEFDFHVRWPGVKLL 146 (651)
T ss_dssp --------------CHHHHHHHHHH-HSTHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CcccccccccccchHHHHHHHHHHH-cCCccHHHHHHHhcCccHHHHHHHHHHH
Confidence 210 000 1345588889999999999999998864
No 139
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=21.80 E-value=72 Score=27.26 Aligned_cols=66 Identities=9% Similarity=0.179 Sum_probs=0.0
Q ss_pred cchhhHHHHHhhhcccCchHHHHHHHHHHH--HhhcCCcchhchHhHHHHHHHHHhhcCCC-----CHHHHHHHHhcC
Q psy12576 95 DMVPHILPFVNANIEHADWRHRDAALMSFG--AILVRPSFIITISERNFIMEVVCEATQSP-----DTQIRVAALQCL 165 (165)
Q Consensus 95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg--~i~EG~~~~~~~~~l~~il~~v~~~l~D~-----~p~VR~aA~~al 165 (165)
.+..+++..+...++|++.+.=+.|+.-+. .+.. ....+...|+|.+.+.+... ++.||..|+++|
T Consensus 322 ~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~-----li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vl 394 (449)
T 2npp_B 322 KIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMS-----LISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNAL 394 (449)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHH-----HHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHH-----HHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHH
No 140
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.74 E-value=1.5e+02 Score=20.91 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=40.4
Q ss_pred chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576 96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVA 160 (165)
Q Consensus 96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~a 160 (165)
--+.+...+.+.+....+.+|-.++.-+-+|.--++.......-..+.+.+......-++.+|..
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k 104 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTK 104 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45667777888888888899999999999998766553222122333333333333345556544
No 141
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=21.31 E-value=2.6e+02 Score=26.18 Aligned_cols=87 Identities=17% Similarity=0.070 Sum_probs=50.8
Q ss_pred cHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHH
Q psy12576 44 SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSF 123 (165)
Q Consensus 44 ~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Al 123 (165)
.++|..+-.|..+|.+|..+ .|+......++...|..=-+ --....|+++...+. |...|.=|+-+|
T Consensus 430 ~R~~~~~~~p~aL~~~l~sv----------~w~~~~~~~~~~~ll~~W~~-~~~~~ALeLL~~~f~--d~~Vr~yAv~~L 496 (940)
T 2wxf_A 430 MRHEVQEHFPEALARLLLVT----------KWNKHEDVAQMLYLLCSWPE-LPVLSALELLDFSFP--DCYVGSFAIKSL 496 (940)
T ss_dssp THHHHHHHCGGGHHHHHTTS----------CTTCHHHHHHHHHHHHTCCC-CCHHHHHHHTSTTCC--CHHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHhcc----------CCCCHHHHHHHHHHHccCCC-CCHHHHHHhcCCcCC--CHHHHHHHHHHH
Confidence 44555554566677666532 27655555666665554322 224457788877764 667888777776
Q ss_pred HHhhcCCcchhchHhHHHHHHHHH
Q psy12576 124 GAILVRPSFIITISERNFIMEVVC 147 (165)
Q Consensus 124 g~i~EG~~~~~~~~~l~~il~~v~ 147 (165)
.. .++..+..+++++++.+.
T Consensus 497 ~~----~~d~~l~~yL~QLVQaLk 516 (940)
T 2wxf_A 497 RK----LTDDELFQYLLQLVQVLK 516 (940)
T ss_dssp TT----CCHHHHHHHHHHHHHHGG
T ss_pred Hh----CCHHHHHHHHHHHHHHHh
Confidence 54 333344456777766543
Done!