RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12576
(165 letters)
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular
trafficking and secretion].
Length = 858
Score = 107 bits (269), Expect = 1e-27
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 4/130 (3%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKS DEVA+Q +EFWS + +EE+D +ED P + F A+ A+ ++P L
Sbjct: 272 MKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY---LPEVPAQNHGF-ARAAVADVLPELL 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
L KQ E DDWNP AA CL L + + ++ +L FV NI W +R+AA+
Sbjct: 328 SLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAV 387
Query: 121 MSFGAILVRP 130
M+FG+++ P
Sbjct: 388 MAFGSVMHGP 397
Score = 41.5 bits (97), Expect = 9e-05
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 138 ERNFIMEVVCEATQSPDTQIRVAALQCL 165
ERN+ M+VVCEATQ D +++ AA CL
Sbjct: 218 ERNYFMQVVCEATQGNDEELQHAAFGCL 245
Score = 27.6 bits (61), Expect = 4.0
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 118 AALMSFGAILVRPSFIITISERNFIMEVVCEATQS--PDTQIRVAALQCL 165
+L G + I N I+ + + +R+AAL+ L
Sbjct: 153 ESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKAL 202
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related to
armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 27.5 bits (62), Expect = 0.47
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 100 ILPFVNANIEHADWRHRDAALMSFGAIL 127
+LP + + D R+AA + GA+
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALA 28
Score = 25.9 bits (58), Expect = 1.6
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 142 IMEVVCEATQSPDTQIRVAALQCL 165
++ ++ E PD ++R AA + L
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEAL 24
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 28.0 bits (63), Expect = 1.2
Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 23/124 (18%)
Query: 50 GALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANI- 108
G L LV +L+ D N + A L LS+ + +I V A
Sbjct: 7 GGLPALVSLLSS-----------SDENVQREAAWALSNLSAGNND----NIQAVVEAGGL 51
Query: 109 -------EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA 161
+ D AAL + + P I + + S + I+ A
Sbjct: 52 PALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNA 111
Query: 162 LQCL 165
L
Sbjct: 112 TGAL 115
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 26.6 bits (59), Expect = 1.5
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 113 WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
W R+AA ++ GA+ ++ + ++ + + D ++R AA L
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWAL 52
>gnl|CDD|216754 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5. This family
includes the N terminus of eIF-5, and the C terminus of
eIF-2 beta. This region corresponds to the whole of the
archaebacterial eIF-2 beta homologue. The region
contains a putative zinc binding C4 finger.
Length = 125
Score = 26.1 bits (58), Expect = 5.5
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 139 RNFIME-VVCEATQSPDTQI----RVAALQC 164
++I E V+C +SPDT++ R+ L+C
Sbjct: 87 DDYIKEYVLCHECKSPDTELIKENRLIFLKC 117
>gnl|CDD|238818 cd01640, IPPase, IPPase; Inositol polyphosphate-1-phosphatase, a
member of the Mg++ dependent family of inositol
monophosphatase-like domains, hydrolyzes the 1' position
phosphate from inositol 1,3,4-trisphosphate and inositol
1,4-bisphosphate. Members in this group may also exhibit
3'-phosphoadenosine 5'-phosphate phosphatase activity,
and they all appear to be inhibited by lithium. IPPase
is one of the proposed targets of Li+ therapy in
manic-depressive illness.
Length = 293
Score = 26.5 bits (59), Expect = 6.7
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 8/67 (11%)
Query: 102 PFVNANIEHADWRHRDA----ALMSFGAILV----RPSFIITISERNFIMEVVCEATQSP 153
PF W R L + + I++ S + + EV +
Sbjct: 148 PFYEKTAGAGAWLGRTIWGLSGLGAHSSDFKEREDAGKIIVSTSHSHSVKEVQLITAGNK 207
Query: 154 DTQIRVA 160
D +R
Sbjct: 208 DEVLRAG 214
>gnl|CDD|220559 pfam10088, DUF2326, Uncharacterized protein conserved in bacteria
(DUF2326). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 140
Score = 26.1 bits (58), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 52 LQYLVPILTQKLTKQEELDDEDD 74
+QY+V I KL K E LD ++D
Sbjct: 97 IQYIVTINKDKLPKDEILDFDED 119
>gnl|CDD|223051 PHA03336, PHA03336, uncharacterized protein; Provisional.
Length = 462
Score = 26.4 bits (58), Expect = 7.3
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 99 HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP 153
HI PF A ++S+G L+ I T+ E ++ VC A
Sbjct: 340 HIAPFFLAAALEEGIDKVWPVVLSYGERLLNAGKIKTLKELVLMLS-VCPAAPRL 393
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 26.3 bits (58), Expect = 9.1
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 125 AILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163
I++ P IIT E + ++ + +A ++ T+ RVA L+
Sbjct: 464 NIMMSPPLIITPEEVDELISIYGKALKA--TEERVAELK 500
>gnl|CDD|198415 cd10433, YccA_like, YccA-like proteins. A prokaryotic member of
the BAX inhibitor (BI)-1 like family of small
transmembrane proteins, Escherichia coli YccA, has been
shown to interact with ATP-dependent protease FtsH,
which degrades abnormal membrane proteins as part of a
quality control mechanism to keep the integrity of
biological membranes.
Length = 205
Score = 26.0 bits (58), Expect = 10.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 119 ALMSFGAILVRPSFIITISERNFIM 143
L S G IL S II E N+IM
Sbjct: 156 VLFSSGFILYDTSRIIHGGETNYIM 180
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.408
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,494,144
Number of extensions: 770718
Number of successful extensions: 620
Number of sequences better than 10.0: 1
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 18
Length of query: 165
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 75
Effective length of database: 6,945,742
Effective search space: 520930650
Effective search space used: 520930650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)