RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12576
(165 letters)
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 142 bits (359), Expect = 3e-41
Identities = 105/165 (63%), Positives = 126/165 (76%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
M+FG IL P M + E + P +R A +
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 432
Score = 35.6 bits (81), Expect = 0.005
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLM-LLSSCCEEDMVPHILPFVNANI----- 108
L+P L +T + ++ + + E + + A I
Sbjct: 129 LIPQLVANVTNPN-----STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK 183
Query: 109 EHADWRHRDAALMSFGAIL-VRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
E + AA + L + SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 184 EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 139 bits (351), Expect = 4e-39
Identities = 105/165 (63%), Positives = 126/165 (76%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
M+FG IL P M + E + P +R A +
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 432
Score = 37.9 bits (87), Expect = 0.001
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANI------ 108
L+P L +T + ++ L + C++ + N +
Sbjct: 129 LIPQLVANVTNPN-----STEHMKEST---LEAIGYICQDIDPEQLQDKSNEILTAIIQG 180
Query: 109 ---EHADWRHRDAALMSFGAILV-RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164
E + AA + L + SER+FIM+VVCEATQ PDT++RVAALQ
Sbjct: 181 MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 240
Query: 165 L 165
L
Sbjct: 241 L 241
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 118 bits (296), Expect = 1e-31
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKS D+VA +EFWS + +EE+D+A E ++ S +A +++ +VP L
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIAYELAQF----PQSPLQSYNFALSSIKDVVPNLL 330
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
LT+Q E ++DDWN +AG CL L + C ++ +L FV NI +WR+R+AA+
Sbjct: 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390
Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
M+FG+I+ P + + + + Q++ C+
Sbjct: 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCI 435
Score = 44.8 bits (105), Expect = 5e-06
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 69 LDDEDDWNPCKAAGVCLMLLSSCCE------EDMVPHILP-----FVNANIEHADWRHRD 117
E N +A+ L+ L CE + +V A R
Sbjct: 143 TGAEQPENVKRAS---LLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199
Query: 118 AALMSFGAIL-VRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
AAL + L + + ERN++M+VVCEATQ+ D +++ AA CL
Sbjct: 200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCL 248
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 92.9 bits (230), Expect = 8e-23
Identities = 26/165 (15%), Positives = 61/165 (36%), Gaps = 5/165 (3%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
+ + VAL+ EFW ++++ + + K + ++ +
Sbjct: 265 TQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL----IPVLVNGMKYSDIDIILLKG 320
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
D DWN K + L +L++ ++++PHILP + + H +W +++ +
Sbjct: 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGI 380
Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
+ GAI + ++ + + +R L
Sbjct: 381 LVLGAIAEGCMQGMI-PYLPELIPHLIQCLSDKKALVRSITCWTL 424
Score = 40.5 bits (94), Expect = 1e-04
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 22/122 (18%)
Query: 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-----------DMVPHILPF 103
L+P L L D +D+N C+ A L CE+ + ++P
Sbjct: 129 LLPKLCSLL-------DSEDYNTCEGA---FGALQKICEDSAEILDSDVLDRPLNIMIPK 178
Query: 104 VNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163
+H+ + R A+ ++ + + + +FI + A + ++R +
Sbjct: 179 FLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDE-EPEVRKNVCR 237
Query: 164 CL 165
L
Sbjct: 238 AL 239
Score = 40.2 bits (93), Expect = 1e-04
Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 72 EDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAIL--VR 129
+ G+ + ++S E P +LP + + ++ D+ + A + I
Sbjct: 101 DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA 160
Query: 130 PSFIITISER--NFIMEVVCEATQSPDTQIRVAALQCL 165
+ +R N ++ + + +IR A+ C+
Sbjct: 161 EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACV 198
Score = 29.8 bits (66), Expect = 0.46
Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 15/123 (12%)
Query: 35 DFGRPPTRTSRFYAKGALQYLVPILTQKLTKQE--------ELDDEDDWNPCKAAGVCLM 86
F + + R +A + + TQ L L +++ K L+
Sbjct: 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 87 LLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVV 146
+L + ++PH+ V ++ + + AL + F +T++E+ +V+
Sbjct: 241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEAC-------EFWLTLAEQPICKDVL 293
Query: 147 CEA 149
Sbjct: 294 VRH 296
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 44.5 bits (104), Expect = 5e-06
Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 66 QEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH------ADWRHRDAA 119
+ +L+ D +A L L E + L + ++ +W+ +D
Sbjct: 366 RRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLY 425
Query: 120 LMSFGAILVRPSFIITISERN---------FIMEVVCEATQSPDTQIRVAALQC 164
+ F A+ + + F E+ + T + I +
Sbjct: 426 IYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAI 479
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 43.1 bits (101), Expect = 1e-05
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 9/114 (7%)
Query: 52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHA 111
++P+ DE D A C+ + +ED+ ++P + E
Sbjct: 201 KSEIIPMF------SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDK 254
Query: 112 DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
WR R F + IT ++ ++ + + ++R AA +
Sbjct: 255 SWRVRYMVADKFTELQKAVGPEITKTD---LVPAFQNLMKDCEAEVRAAASHKV 305
Score = 40.4 bits (94), Expect = 1e-04
Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 9/132 (6%)
Query: 40 PTRTSRFYAKGALQYLVPILTQKLTKQ-----EELDDEDDWNPCKAAGVCLMLLSSCCE- 93
TSR A G P ++ + + L +D +AA L + E
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL 197
Query: 94 EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP 153
+++ I+P + R A+ + I + +M + +A +
Sbjct: 198 DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA---QLLPQEDLEALVMPTLRQAAEDK 254
Query: 154 DTQIRVAALQCL 165
++R
Sbjct: 255 SWRVRYMVADKF 266
Score = 38.8 bits (90), Expect = 3e-04
Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 9/113 (7%)
Query: 53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHAD 112
+ L + L D A L+ +E I+P V A +
Sbjct: 440 EKLNSLC------MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN 493
Query: 113 WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
+ HR L + IT ++ V P +R + L
Sbjct: 494 YLHRMTTLFCINVLSEVCGQDIT---TKHMLPTVLRMAGDPVANVRFNVAKSL 543
Score = 35.0 bits (80), Expect = 0.007
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 9/115 (7%)
Query: 51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH 110
+++L+P+ +L DE + + +LP + E
Sbjct: 360 TIEHLLPLF------LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 413
Query: 111 ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
A WR R A + + + + + IR AA L
Sbjct: 414 AKWRVRLAIIEYMPLLAGQLGVEFFD---EKLNSLCMAWLVDHVYAIREAATSNL 465
Score = 31.9 bits (72), Expect = 0.088
Identities = 13/119 (10%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 48 AKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNAN 107
+ ++P L ++ +D+ A L + E ++P
Sbjct: 236 QEDLEALVMPTL------RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289
Query: 108 IEHADWRHRDAALMSFGAIL-VRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
++ + R AA + + I+ + E + ++ A +
Sbjct: 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVI 348
Score = 31.1 bits (70), Expect = 0.16
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 10/112 (8%)
Query: 51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH 110
L+P LT + DED+ A + + V +LP + +
Sbjct: 46 TRSELLPFLTDTI------YDEDEVL-LALAEQLGTFTTLVGGPEYVHCLLPPLESLATV 98
Query: 111 ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL 162
+ RD A+ S AI + +V R +A
Sbjct: 99 EETVVRDKAVESLRAIS---HEHSPSDLEAHFVPLVKRLAGGDWFTSRTSAC 147
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing,
nuclear transport, mRNA splicing, mRNA transport; 3.35A
{Drosophila melanogaster}
Length = 971
Score = 41.9 bits (97), Expect = 4e-05
Identities = 21/173 (12%), Positives = 53/173 (30%), Gaps = 22/173 (12%)
Query: 6 DEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTK 65
+ + + FW + DE ++ ++ + Y K +L IL +K +
Sbjct: 367 ESCSTMALAFWYMLQDEVFAMSNDEQKHK---------CWEYIKPLYAHLTRILVRKSEQ 417
Query: 66 QEEL--------DDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANI-----EHAD 112
+E D E + M + ++ + ++ I
Sbjct: 418 PDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTH 477
Query: 113 WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
W +A + SF ++ + + + + ++ AL+ +
Sbjct: 478 WTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETM 530
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Length = 997
Score = 41.7 bits (97), Expect = 5e-05
Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 1/123 (0%)
Query: 44 SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPF 103
+ YLV + L + D + L ++ V I+ +
Sbjct: 746 RGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDY 805
Query: 104 VNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCE-ATQSPDTQIRVAAL 162
V ++ L L +T E+N I+E V ++RV A
Sbjct: 806 VCSSNVALSSNQTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAA 865
Query: 163 QCL 165
L
Sbjct: 866 SIL 868
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 41.4 bits (96), Expect = 6e-05
Identities = 20/174 (11%), Positives = 52/174 (29%), Gaps = 28/174 (16%)
Query: 6 DEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTK 65
+ + + FW + D+ + E + + LV +L K
Sbjct: 354 ETTSSLTLTFWYTLQDDILSFEAEKQAVY----------QQVYRPVYFQLVDVLLHKAQF 403
Query: 66 --QEELDDEDD----------WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADW 113
EE + +L + ++ + + ++ E W
Sbjct: 404 PSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSW 463
Query: 114 RHRDAALMSFGAILVRPSFIITISERNFIMEVV--CEATQSPDTQIRVAALQCL 165
+H +A L F +I + I ++ + + ++ + Q+ + +
Sbjct: 464 QHTEALLYGFQSI----AETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTI 513
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 37.1 bits (85), Expect = 0.001
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 79 KAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISE 138
+ +L M P +L ++ + R R L+ + + I+ +
Sbjct: 151 SVRDIVNVLSDVVGPLKMTPMLLD----ALKSKNARQRSECLLVIEYYI--TNAGISPLK 204
Query: 139 RNFIMEVVCEATQSPDTQIRVAALQCL 165
+ + V D +R AA+ L
Sbjct: 205 SLSVEKTVAPFVGDKDVNVRNAAINVL 231
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 35.8 bits (82), Expect = 0.003
Identities = 10/73 (13%), Positives = 23/73 (31%)
Query: 93 EEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS 152
D++ + +E W R +L +L + + + T+
Sbjct: 9 PVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68
Query: 153 PDTQIRVAALQCL 165
+ + A +CL
Sbjct: 69 SNVVLVAMAGKCL 81
Score = 33.8 bits (77), Expect = 0.017
Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 11/115 (9%)
Query: 52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHA 111
VP L +K E N A + + + + + ++ +
Sbjct: 96 ASACVPSLLEKFK-------EKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNK 145
Query: 112 DWRHRDAALMSFGAILVR-PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
+ + + L R + + + + PD +R ++ + L
Sbjct: 146 NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEAL 200
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 34.1 bits (77), Expect = 0.019
Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 66 QEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHAD--WRHRDAALMSF 123
+E + + D K+ L+ L+ D ++ + I+ ++ W + + +
Sbjct: 418 REFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAI 477
Query: 124 GAILVRPSFIITISERNFIMEVV------CEATQSPDTQIRVAA 161
G+I + +E+ F++ V+ + D + VA+
Sbjct: 478 GSIS---GTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVAS 518
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 32.3 bits (73), Expect = 0.044
Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 8/126 (6%)
Query: 44 SRFYAKGALQYLVPILTQKLT-KQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILP 102
+ ++K + + L + K+ + + L SS EDM+ IL
Sbjct: 94 TPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILE 153
Query: 103 FVNANIEHADWRHRDAALMSFGAILVR---PSFIITISERNFIMEVVCEATQSPDTQIRV 159
++H + R F A + + ++ ++ +V + IR
Sbjct: 154 H----MKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRT 209
Query: 160 AALQCL 165
+
Sbjct: 210 IGFESF 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.11
Identities = 29/199 (14%), Positives = 55/199 (27%), Gaps = 74/199 (37%)
Query: 39 PPTRTSRFYAKGALQ----YLVPILTQKL---TKQEELDDEDDWNPCKA-----AGVC-- 84
P T F + + Y I + K E++ E + + G+
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 85 -------LMLLSSCCEEDM-----VP-------H-------------ILPFVNA------ 106
L L+ ED+ +P H ++ +
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 107 ---NIEHADWRHRDAALMS-FGAILVRPSFIITISER---NFIMEVVCEATQ-------- 151
++ A RD S +G I + P + + +++E V + T
Sbjct: 1789 RGMTMQVAV--PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 152 -SPDTQIRVA----ALQCL 165
+ Q A AL +
Sbjct: 1847 NVENQQYVAAGDLRALDTV 1865
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.13
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 22/115 (19%)
Query: 13 IEFWSNVSDEEVDLAIEDS-EAADFGRPPTRTSRFYAKGALQYLVPILTQKL----TKQE 67
+ W +V+ +++ IE S + P F I T L
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 68 ELDDEDDWNPCKAAGVCLMLLSSCCEEDM------VPHILPFVNANIEHADWRHR 116
+ D V + S E+ +P I + +E+ HR
Sbjct: 401 KSDVMVV--------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 79 KAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVR-----PSFI 133
A CL L S +E V I+ + N+ + RD + + ++
Sbjct: 66 NLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125
Query: 134 ITISERNFIMEVVCEATQ-SPDTQIRVAALQCL 165
+ + I + A D +++ AL +
Sbjct: 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 158
Score = 27.8 bits (60), Expect = 2.3
Identities = 13/129 (10%), Positives = 31/129 (24%), Gaps = 10/129 (7%)
Query: 45 RFYAKGALQYLVPILTQKLTKQEELDDE-------DDWNPCKAAGVCLMLLSSCCEEDMV 97
R Y A + V +++ D N D
Sbjct: 272 REYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD 331
Query: 98 PHILPFVNANIEHADWRHRDAALMSFGAIL-VRPSFIITISERNFIMEVVCEATQSPDTQ 156
++ + W+ R AA A++ R + + + + + +
Sbjct: 332 DQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT--VSPALISRFKEREEN 389
Query: 157 IRVAALQCL 165
++
Sbjct: 390 VKADVFHAY 398
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 30.6 bits (68), Expect = 0.25
Identities = 24/186 (12%), Positives = 59/186 (31%), Gaps = 30/186 (16%)
Query: 6 DEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTK 65
E+ +E+W++++ E + + A+ + ++ + +
Sbjct: 365 TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVS 424
Query: 66 Q-------------------EELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNA 106
+ E + D D N K L+ L+ D + +
Sbjct: 425 RMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQN 484
Query: 107 --NIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVV------CEATQSPDTQIR 158
N W++ + + G+I + E+ F++ V+ CE + D +
Sbjct: 485 QVNGTEWSWKNLNTLCWAIGSIS---GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAI 541
Query: 159 VAALQC 164
+A+
Sbjct: 542 IASNIM 547
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 29.0 bits (64), Expect = 0.75
Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 4/101 (3%)
Query: 69 LDDEDDWNPCKAAGVCLMLLSSCCEEDMVP----HILPFVNANIEHADWRHRDAALMSFG 124
L + + + L L+S E + + + AA
Sbjct: 589 LQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLC 648
Query: 125 AILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
+++ I N ++ + + D + A L
Sbjct: 649 NLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 26.9 bits (58), Expect = 4.3
Identities = 6/89 (6%), Positives = 29/89 (32%), Gaps = 1/89 (1%)
Query: 78 CKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI-ITI 136
+ L + +E++ + + + E + + + + ++ ++
Sbjct: 183 TQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH 242
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
+ + ++++ A +CL
Sbjct: 243 ITAENCKLLEILCLLLNEQELQLGAAECL 271
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 26.2 bits (57), Expect = 5.2
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNF 141
G + L + M+ I ++ I +AL+S +L ++ + +
Sbjct: 122 GPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----KRW 177
Query: 142 IMEVVCEATQSPDTQIRVAALQCL 165
+ E EA S + ++ AL L
Sbjct: 178 VNEAQ-EAASSDNIMVQYHALGLL 200
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 25.7 bits (56), Expect = 9.7
Identities = 13/65 (20%), Positives = 17/65 (26%), Gaps = 3/65 (4%)
Query: 17 SNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWN 76
S D L + D K L + + T E L + D W
Sbjct: 175 SVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCI-ELFTTMETLGEHDPWY 233
Query: 77 --PCK 79
CK
Sbjct: 234 CPNCK 238
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.408
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,622,235
Number of extensions: 151564
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 54
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)