RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12576
(165 letters)
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 109 bits (273), Expect = 2e-29
Identities = 105/165 (63%), Positives = 126/165 (76%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 267 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 326
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 327 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 386
Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
M+FG IL P M + E + P +R A +
Sbjct: 387 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 431
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 91.0 bits (224), Expect = 2e-22
Identities = 105/164 (64%), Positives = 125/164 (76%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+ +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164
M+FG IL P M + E + P +R A
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 62.2 bits (150), Expect = 1e-12
Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 6/139 (4%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
+ D + + + F + V+ I ++E+A +
Sbjct: 301 NQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDD 360
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE------HADWR 114
+ +L+ D +A L L E + L + ++ +W+
Sbjct: 361 PIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWK 420
Query: 115 HRDAALMSFGAILVRPSFI 133
+D + F A+ + +
Sbjct: 421 FKDLYIYLFTALAINGNIT 439
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 57.9 bits (138), Expect = 5e-11
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
Query: 1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
MKS D+VA +EFWS + +EE+D+A E ++ S +A +++ +VP L
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQS----PLQSYNFALSSIKDVVPNLL 330
Query: 61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
LT+Q E ++DDWN +AG CL L + C ++ +L FV NI +WR+R+AA+
Sbjct: 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390
Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
M+FG+I+ P + + + + Q++ C+
Sbjct: 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCI 435
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 42.9 bits (99), Expect = 6e-06
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Query: 70 DDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVR 129
D A L+ +E I+P V A ++ HR L +
Sbjct: 451 VDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV 510
Query: 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
IT ++ V P +R + L
Sbjct: 511 CGQDITTKH---MLPTVLRMAGDPVANVRFNVAKSL 543
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 35.9 bits (81), Expect = 0.002
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWR 114
L P + + + + CL L+ E ++P + ++
Sbjct: 922 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLI----SGSSY 977
Query: 115 HRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
R + + + + I +N + + + PD +R AL
Sbjct: 978 ARSSVVTAVKFTISDHPQPIDPLLKN-CIGDFLKTLEDPDLNVRRVALVTF 1027
Score = 35.5 bits (80), Expect = 0.002
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 2/119 (1%)
Query: 48 AKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILP-FVNA 106
LV LT K + L L C + ++ ++
Sbjct: 159 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSE 218
Query: 107 NIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
++ + AI R + I+ +V + D ++R +Q
Sbjct: 219 LSKNDSMSTTRTYIQCIAAI-SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 276
Score = 35.5 bits (80), Expect = 0.002
Identities = 8/68 (11%), Positives = 28/68 (41%)
Query: 98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI 157
+ + + + +D R A L + S + +++++ + + + ++
Sbjct: 2 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEV 61
Query: 158 RVAALQCL 165
+ A++CL
Sbjct: 62 QNLAVKCL 69
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 34.7 bits (78), Expect = 0.004
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 79 KAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFII---- 134
G+ + ++S E P +LP + + ++ D+ + A + I + I+
Sbjct: 106 ATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV 165
Query: 135 TISERNFIMEVVCEATQSPDTQIRVAALQC 164
N ++ + + +IR A+ C
Sbjct: 166 LDRPLNIMIPKFLQFFKHSSPKIRSHAVAC 195
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 30.5 bits (68), Expect = 0.078
Identities = 8/100 (8%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 66 QEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGA 125
++ +D + A + + + + ++ + ++ D R A +
Sbjct: 89 VKDCEDPNPLIRALA----VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAK 144
Query: 126 ILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
+ + ++ E ++ + + + + A+ L
Sbjct: 145 LHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAAL 181
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId:
562]}
Length = 214
Score = 25.7 bits (55), Expect = 2.6
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 83 VCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRP 130
L C +D V + + I +W ++ FG +
Sbjct: 144 RVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKA 191
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.408
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 631,025
Number of extensions: 27708
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 23
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)