BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12577
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
Imidazo[4,5- C]pyridine Inhibitor
pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
INHIBITOR
pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
With A Heteroarylalanine Diacid
Length = 696
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 43 ICYSEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGQSSFSVISDQLE 102
IC S CI +A++L+ NM+ + +PC DF+++ CG +L+ VIP+ S +F ++ D+LE
Sbjct: 2 ICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELE 61
Query: 103 VQLRTIIEEPAKDSDIKPFRLAKNLYKVCMNKTQIELQGLDHMKSILKHLGGWPV 157
V L+ +++EP K DI + AK LY+ C+N++ I+ +G + + +L + GWPV
Sbjct: 62 VVLKDVLQEP-KTEDIVAVQKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPV 115
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 191 ICYSEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKS 237
IC S CI +A++L+ NM+ + +PC DF+++ CG +L+ VIP+ S
Sbjct: 2 ICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSS 48
>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
Length = 670
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 46 SEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGQSSFSVISDQLEVQL 105
SE C+ S +LS+M+ +VDPC DF+ + CG +++ +PD S +FS + + + +
Sbjct: 1 SEACVSVTSSILSSMDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQAII 60
Query: 106 RTIIEEPAKDSDIKPFRLAKNLYKVCMNKTQIELQGLDHMKSILKHLGGWPV 157
+ ++E + S + R A+ Y+ CMN+T+IE + +++ LGGW +
Sbjct: 61 KHLLEN-STASVSEAERKAQVYYRACMNETRIEELRAKPLMELIERLGGWNI 111
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 194 SEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGDSWDEGSFS 247
SE C+ S +LS+M+ +VDPC DF+ + CG +++ +PD S W G+FS
Sbjct: 1 SEACVSVTSSILSSMDPTVDPCHDFFSYACGGWIKANPVPDGHS--RW--GTFS 50
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 260 YSVDYFLDFSVGVNLKNSTERVIEFDQASLGL-SREY 295
Y F V + KNS VI+ DQ+ LGL SR+Y
Sbjct: 131 YRTSPFFSVYVSADSKNSNSNVIQVDQSGLGLPSRDY 167
>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
Length = 699
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 57 LSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGQSSFSVISDQLEVQLRTII 109
LS+++ P D + GR+L E IP D++ +F + D+ E Q+R +I
Sbjct: 47 LSHIDADARPQDDLFGHVNGRWLAEHEIPADRATDGAFRSLFDRAETQVRDLI 99
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|B Chain B, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|C Chain C, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
Length = 327
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 LDFSVGVNLKNSTERVIEFDQASLGLSREYLAK 298
+D++ V LKNS R E + SLGLS+E AK
Sbjct: 126 IDYNESVELKNSILRESEILRISLGLSKEDTAK 158
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 LDFSVGVNLKNSTERVIEFDQASLGLSREYLAK 298
+D++ V LKNS R E + SLGLS+E AK
Sbjct: 127 IDYNESVELKNSILRESEILRISLGLSKEDTAK 159
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 266 LDFSVGVNLKNSTERVIEFDQASLGLSREYLAK 298
+D++ V LKNS R E + SLGLS+E AK
Sbjct: 118 IDYNESVELKNSILRESEILRISLGLSKEDTAK 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,848,066
Number of Sequences: 62578
Number of extensions: 364733
Number of successful extensions: 659
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 12
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)