Query psy12577
Match_columns 298
No_of_seqs 166 out of 1342
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 22:53:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3624|consensus 99.9 3.3E-26 7.1E-31 236.8 18.8 165 42-294 38-203 (687)
2 PF05649 Peptidase_M13_N: Pept 99.9 3.2E-26 6.9E-31 216.5 10.9 149 67-296 1-155 (390)
3 COG3590 PepO Predicted metallo 99.9 1.2E-22 2.6E-27 202.3 11.2 154 55-297 9-166 (654)
4 KOG3624|consensus 98.7 4.7E-09 1E-13 109.4 3.5 47 190-236 38-84 (687)
5 PF05649 Peptidase_M13_N: Pept 96.5 0.00045 9.8E-09 65.4 -1.1 21 215-235 1-21 (390)
6 COG3590 PepO Predicted metallo 90.9 0.094 2E-06 54.2 1.0 36 203-238 9-44 (654)
7 PF03002 Somatostatin: Somatos 26.6 31 0.00068 19.6 0.7 10 211-220 3-12 (18)
8 PF07459 CTX_RstB: CTX phage R 22.4 1.2E+02 0.0025 25.5 3.5 32 250-283 69-100 (117)
9 COG0278 Glutaredoxin-related p 21.4 80 0.0017 26.0 2.3 43 120-162 32-76 (105)
10 PF11966 SSURE: Fibronectin-bi 17.2 76 0.0017 24.7 1.3 14 2-15 6-19 (81)
No 1
>KOG3624|consensus
Probab=99.94 E-value=3.3e-26 Score=236.82 Aligned_cols=165 Identities=36% Similarity=0.724 Sum_probs=151.6
Q ss_pred CCCCChhHHHHHHHHHHcCCCCCCCCcchHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHhhCcCCCCCChHH
Q psy12577 42 KICYSEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGQSSFSVISDQLEVQLRTIIEEPAKDSDIKPF 121 (298)
Q Consensus 42 ~vC~S~~Ci~~A~~L~s~MN~SVDPCdDFY~YACG~W~k~~~Ip~d~~~~s~fs~l~d~v~~~Lk~LLe~~~~~~~~s~~ 121 (298)
.+|.++.|+.+|+.|+++||.+||||+|||+||||+|.+.++++.+. .++.|..+.+.+.+.++++|++......++.+
T Consensus 38 ~~~~~~~~~~~a~~l~~~~d~svdPC~dFy~~ACG~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~s~~~ 116 (687)
T KOG3624|consen 38 DVCESPECVTLAHQLLNYMDTSVDPCEDFYQYACGNWAENHPIPKDK-RSSTLDELQDQVLRQLKELLEEPNSSSTSKAE 116 (687)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCCcchhHHHHHhCcHhhcCCCcccc-cccHHHHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 78999999999999999999999999999999999999999999877 89999999999999999999987655578899
Q ss_pred HHHHHHHHHHHchHHHhhhc-hhHHHHHHHHhCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCCCccchhhhHhH
Q psy12577 122 RLAKNLYKVCMNKTQIELQG-LDHMKSILKHLGGWPVLEDLPQEPSETDSLADESKAIRKPQSSTAYSPKICYSEGCIHT 200 (298)
Q Consensus 122 ~K~k~fY~SCmd~~~~nk~G-~~pL~~lL~~IggWP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (298)
++++.||++|++....+..+ ..++.++|+.+||||.+..
T Consensus 117 ~~~k~~Y~sC~~~~~~~~~~~~~~l~~~i~~~G~wP~l~~---------------------------------------- 156 (687)
T KOG3624|consen 117 RKAKRFYESCLDAKALESSGALQLLFRIIQSIGGWPLLEG---------------------------------------- 156 (687)
T ss_pred HHHHHHHHHHhchhhhhhhcchHHHHHHHHHhCCCcCCCC----------------------------------------
Confidence 99999999999987777765 8899999999999999985
Q ss_pred HHHHhhhCCCCCCCccccccccccccccccccCCCCCCCCCCCCcccHHHHHHHHHHhcCCCCcceEEeeecCCCCCcce
Q psy12577 201 ASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGDSWDEGSFSWKGSVYKFRRYGYSVDYFLDFSVGVNLKNSTER 280 (298)
Q Consensus 201 ~~~~~~~~~~~~~pc~~f~~~~c~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~ 280 (298)
.|++.+|+|.+.++.+... ||+..|+.+.|..|..+++
T Consensus 157 ---------------------------------------~w~~~~f~~~~~l~~~~~~-yg~~~l~~~~v~~~~~~~~-- 194 (687)
T KOG3624|consen 157 ---------------------------------------NWDESKFNLNEMLANLLRR-YGLTTLFLLEVALDYKNSS-- 194 (687)
T ss_pred ---------------------------------------CCCcccCCHHHHHHHHHHH-cCccceeEEEEecccccCc--
Confidence 3999999999999998887 8999999999999998888
Q ss_pred EEEEecCCCCCchh
Q psy12577 281 VIEFDQASLGLSRE 294 (298)
Q Consensus 281 ~i~~~~~~l~l~~~ 294 (298)
|+.+++|.+
T Consensus 195 -----~~~~~l~~~ 203 (687)
T KOG3624|consen 195 -----QPGLILPSR 203 (687)
T ss_pred -----ccccCcchH
Confidence 888888854
No 2
>PF05649 Peptidase_M13_N: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR008753 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0008237 metallopeptidase activity, 0006508 proteolysis; PDB: 3DWB_A 3ZUK_A 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A.
Probab=99.93 E-value=3.2e-26 Score=216.53 Aligned_cols=149 Identities=33% Similarity=0.734 Sum_probs=123.7
Q ss_pred CcchHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHhhCcCCC-----CCChHHHHHHHHHHHHHchHHHhhhc
Q psy12577 67 CQDFYRFTCGRFLEETVIPDDKSGQSSFSVISDQLEVQLRTIIEEPAKD-----SDIKPFRLAKNLYKVCMNKTQIELQG 141 (298)
Q Consensus 67 CdDFY~YACG~W~k~~~Ip~d~~~~s~fs~l~d~v~~~Lk~LLe~~~~~-----~~~s~~~K~k~fY~SCmd~~~~nk~G 141 (298)
|||||+||||+|.+.++++.+...++.|+.+++.+.+.++++|++.... ...++++|++.||++||+...++..|
T Consensus 1 CdDFY~yvCg~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~Y~sC~~~~~~~~~~ 80 (390)
T PF05649_consen 1 CDDFYQYVCGNWIKSHPIPSGQSSYSTFSDLQDNIDRQLKEILEKPSSSDTSPAEDSSAEQKAKALYDSCMDTDAREKDG 80 (390)
T ss_dssp TT-HHHHHHHHHHHH----TT-SEEEHHHHHHHHHHHHHHHHHSCCS--HCC-TTTTHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred CccHHHHHhCcHHhhCCCCcCcccccHHHHHHHHhhhhhhhhhcccccccccccCCChHHHHHHHHHHHHHHhhhcchhh
Confidence 9999999999999999999999999999999999999999999987432 25799999999999999999999999
Q ss_pred hhHHHHHHHHhCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCCCccchhhhHhHHHHHhhhCCCCCCCccccccc
Q psy12577 142 LDHMKSILKHLGGWPVLEDLPQEPSETDSLADESKAIRKPQSSTAYSPKICYSEGCIHTASKLLSNMNQSVDPCQDFYRF 221 (298)
Q Consensus 142 ~~pL~~lL~~IggWP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pc~~f~~~ 221 (298)
.++|+++|+.+|+||.+..
T Consensus 81 ~~~l~~~l~~~~~~p~~~~------------------------------------------------------------- 99 (390)
T PF05649_consen 81 LEPLKEFLRSIGGWPFLSD------------------------------------------------------------- 99 (390)
T ss_dssp THHHHHHHHHCTCBCCCSS-------------------------------------------------------------
T ss_pred hhhHHHHHHHhhhcccCCc-------------------------------------------------------------
Confidence 9999999999999999853
Q ss_pred cccccccccccCCCCCCCCCCCCcccHHHHHHHHHHhcCCCCcceEEeeecCCCCCcceEEEEecCCCCCchh-hh
Q psy12577 222 TCGRFLEETVIPDDKSGDSWDEGSFSWKGSVYKFRRYGYSVDYFLDFSVGVNLKNSTERVIEFDQASLGLSRE-YL 296 (298)
Q Consensus 222 ~c~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~i~~~~~~l~l~~~-y~ 296 (298)
|++..++|...++.+.+. +|+++||++.|..|+.|++.++|+|++|.++||++ |+
T Consensus 100 -------------------~~~~~~~~~~~l~~l~~~-~~~~~l~~~~v~~d~~~~~~~~l~i~~~~~~l~~~~~~ 155 (390)
T PF05649_consen 100 -------------------WNESKFDLLDTLARLSRR-YGIDPLFSLYVDPDPQNPSKYILYIDPPELGLPSKEYY 155 (390)
T ss_dssp -------------------HHTTCCHHHHHHHHHHHT-C---SSSEEEEEEETTEEEEEEEEEEE---SSSSGGGG
T ss_pred -------------------ccCCHhHHHHHHHHHHhh-ccccceeeeEeeccccchheeEeecccCCCCCcchHHh
Confidence 556788999999999987 78899999999999999999999999999999876 44
No 3
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.2e-22 Score=202.29 Aligned_cols=154 Identities=28% Similarity=0.467 Sum_probs=136.9
Q ss_pred HHHHcCCCCCCCCcchHhhhccccccccccCCCCCCCchHHHHHHHHHHHHHHHhhCcCCC---CCChHHHHHHHHHHHH
Q psy12577 55 KLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGQSSFSVISDQLEVQLRTIIEEPAKD---SDIKPFRLAKNLYKVC 131 (298)
Q Consensus 55 ~L~s~MN~SVDPCdDFY~YACG~W~k~~~Ip~d~~~~s~fs~l~d~v~~~Lk~LLe~~~~~---~~~s~~~K~k~fY~SC 131 (298)
.-++.||..+.||||||.||+|.|++.++||+|++++|.|..+.++.+..++++++..... ......+++..||++-
T Consensus 9 fd~s~~d~~~rpqdDly~~vNG~Wl~~~~IPaDrsr~G~F~~L~d~~e~~~~~~i~~a~a~~~ap~~~~~~~~g~~y~~~ 88 (654)
T COG3590 9 FDLSHMDAMTRPQDDLYGYVNGEWLKTAEIPADRSRDGAFDKLDDRAEALVRDIIEAAAANEQAPEDAILQRIGKLYRSF 88 (654)
T ss_pred cChhcCCCcCCcchHHHHHhhhhhhhcCcCCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999999999999875432 2346889999999999
Q ss_pred HchHHHhhhchhHHHHHHHHhCCCCCCCCCCCCCCcccchhhhhhhhccCCCCCCCCCCccchhhhHhHHHHHhhhCCCC
Q psy12577 132 MNKTQIELQGLDHMKSILKHLGGWPVLEDLPQEPSETDSLADESKAIRKPQSSTAYSPKICYSEGCIHTASKLLSNMNQS 211 (298)
Q Consensus 132 md~~~~nk~G~~pL~~lL~~IggWP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (298)
||...+++.|..||+..|++|.......+
T Consensus 89 mD~~~~E~~g~~Pl~~~La~i~~~~s~sd--------------------------------------------------- 117 (654)
T COG3590 89 MDEAKREKAGVDPLKPELAEIDSLASFSD--------------------------------------------------- 117 (654)
T ss_pred ccHHHHHhcCCCchhHHHHHHHhhccHHH---------------------------------------------------
Confidence 99999999999999999999865333322
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCcccHHHHHHHHHHhcCCCCcceEEeeecCCCCCcceEEEEecCCCCC
Q psy12577 212 VDPCQDFYRFTCGRFLEETVIPDDKSGDSWDEGSFSWKGSVYKFRRYGYSVDYFLDFSVGVNLKNSTERVIEFDQASLGL 291 (298)
Q Consensus 212 ~~pc~~f~~~~c~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~i~~~~~~l~l 291 (298)
+...+.++.+. |++.+|+|+|++|.+|++.+|+++.|++|||
T Consensus 118 ------------------------------------f~a~l~~~~~~--g~~~~f~~~vspD~kds~~~v~~~sq~GlgL 159 (654)
T COG3590 118 ------------------------------------FAAALGQLERA--GQGNPFGFSVSPDFKDSTRYVLYFSQSGLGL 159 (654)
T ss_pred ------------------------------------HHHHHHHHHhc--cCCCCceeeeccccccchhheeeeccCCCCC
Confidence 35688889885 7799999999999999999999999999999
Q ss_pred chh-hhc
Q psy12577 292 SRE-YLA 297 (298)
Q Consensus 292 ~~~-y~~ 297 (298)
|++ ||.
T Consensus 160 PD~~YY~ 166 (654)
T COG3590 160 PDTTYYR 166 (654)
T ss_pred Cchhhhh
Confidence 998 875
No 4
>KOG3624|consensus
Probab=98.75 E-value=4.7e-09 Score=109.41 Aligned_cols=47 Identities=47% Similarity=1.027 Sum_probs=45.2
Q ss_pred CccchhhhHhHHHHHhhhCCCCCCCccccccccccccccccccCCCC
Q psy12577 190 KICYSEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDK 236 (298)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~pc~~f~~~~c~~~~~~~~~~~~~ 236 (298)
++|.+++|+..|+.|++.+|.+++||.|||+||||+|.....++.+.
T Consensus 38 ~~~~~~~~~~~a~~l~~~~d~svdPC~dFy~~ACG~~~~~~~~~~~~ 84 (687)
T KOG3624|consen 38 DVCESPECVTLAHQLLNYMDTSVDPCEDFYQYACGNWAENHPIPKDK 84 (687)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCCcchhHHHHHhCcHhhcCCCcccc
Confidence 89999999999999999999999999999999999999999999764
No 5
>PF05649 Peptidase_M13_N: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR008753 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0008237 metallopeptidase activity, 0006508 proteolysis; PDB: 3DWB_A 3ZUK_A 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A.
Probab=96.50 E-value=0.00045 Score=65.43 Aligned_cols=21 Identities=38% Similarity=1.186 Sum_probs=15.1
Q ss_pred ccccccccccccccccccCCC
Q psy12577 215 CQDFYRFTCGRFLEETVIPDD 235 (298)
Q Consensus 215 c~~f~~~~c~~~~~~~~~~~~ 235 (298)
|+|||+||||+|.....++.+
T Consensus 1 CdDFY~yvCg~w~~~~~~~~~ 21 (390)
T PF05649_consen 1 CDDFYQYVCGNWIKSHPIPSG 21 (390)
T ss_dssp TT-HHHHHHHHHHHH----TT
T ss_pred CccHHHHHhCcHHhhCCCCcC
Confidence 999999999999999988875
No 6
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=0.094 Score=54.17 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=33.1
Q ss_pred HHhhhCCCCCCCccccccccccccccccccCCCCCC
Q psy12577 203 KLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSG 238 (298)
Q Consensus 203 ~~~~~~~~~~~pc~~f~~~~c~~~~~~~~~~~~~~~ 238 (298)
+=++.|+.++.||+|||.||=|+|.++..||+|.+.
T Consensus 9 fd~s~~d~~~rpqdDly~~vNG~Wl~~~~IPaDrsr 44 (654)
T COG3590 9 FDLSHMDAMTRPQDDLYGYVNGEWLKTAEIPADRSR 44 (654)
T ss_pred cChhcCCCcCCcchHHHHHhhhhhhhcCcCCCCccc
Confidence 346889999999999999999999999999999776
No 7
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=26.65 E-value=31 Score=19.59 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=7.3
Q ss_pred CCCCcccccc
Q psy12577 211 SVDPCQDFYR 220 (298)
Q Consensus 211 ~~~pc~~f~~ 220 (298)
...||.+||-
T Consensus 3 ~k~~CknffW 12 (18)
T PF03002_consen 3 RKAGCKNFFW 12 (18)
T ss_pred ccccccceee
Confidence 4568999873
No 8
>PF07459 CTX_RstB: CTX phage RstB protein; InterPro: IPR010008 This family contains a number of RstB proteins approximately 120 residues long, including RstB1 and RstB2, from the Vibrio cholerae phage CTX. Functional analyses indicate that rstB2 is required for integration of the CTXphi phage into the V. cholerae chromosome [].
Probab=22.38 E-value=1.2e+02 Score=25.53 Aligned_cols=32 Identities=6% Similarity=0.296 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCcceEEeeecCCCCCcceEEE
Q psy12577 250 GSVYKFRRYGYSVDYFLDFSVGVNLKNSTERVIE 283 (298)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~i~ 283 (298)
..+++|.. +-...+.++.+.+|+.|.++|++.
T Consensus 69 ~ll~~~~~--i~fP~~veL~lepdP~dpsrNiVv 100 (117)
T PF07459_consen 69 ALLAKFKQ--IQFPVLVELELEPDPEDPSRNIVV 100 (117)
T ss_pred HHHHHHhc--CcCceEEEEEccCCCCCCcccEEE
Confidence 36777776 467999999999999999999874
No 9
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.35 E-value=80 Score=25.98 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHH--chHHHhhhchhHHHHHHHHhCCCCCCCCCC
Q psy12577 120 PFRLAKNLYKVCM--NKTQIELQGLDHMKSILKHLGGWPVLEDLP 162 (298)
Q Consensus 120 ~~~K~k~fY~SCm--d~~~~nk~G~~pL~~lL~~IggWP~~~~~~ 162 (298)
...++......|- +....|-+.-..++.-|+++.+||.++.|.
T Consensus 32 FS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLy 76 (105)
T COG0278 32 FSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLY 76 (105)
T ss_pred ccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceee
Confidence 4455555566664 455566666678999999999999999764
No 10
>PF11966 SSURE: Fibronectin-binding repeat; InterPro: IPR021021 Streptococcal surface repeat domain - SSURE - is a protein fragment found to bind to extracellular matrix protein fibronectin but not to collagen or submaxillary mucin in Streptococci. Anti-SSURE antibodies recognised the corresponding protein on the surface of streptococcal cells. The full-length proteins are thus fibronectin-binding surface adhesins []. The proteins are further characterised by having an N-terminal motif resembling [YF]SIRKxxxGxxS[VIA] IPR005877 from INTERPRO and a C-terminal LPXTG motif-containing region which is a characteristic of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall (see IPR019931 from INTERPRO).
Probab=17.24 E-value=76 Score=24.74 Aligned_cols=14 Identities=43% Similarity=0.845 Sum_probs=10.0
Q ss_pred CCCccccccCCCCC
Q psy12577 2 KHPSLLPFTDLPQE 15 (298)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (298)
|||.|+|+..|+.+
T Consensus 6 knp~L~Pl~~l~kG 19 (81)
T PF11966_consen 6 KNPALLPLEGLTKG 19 (81)
T ss_pred CCCCCCCccccCCc
Confidence 67777777777766
Done!