RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12577
(298 letters)
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 151 bits (382), Expect = 2e-41
Identities = 45/145 (31%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
Query: 43 ICYSEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGQSSFSVISDQLE 102
IC S CI +A++L+ NM+ + +PC DF+++ CG +L+ VIP+ S +F ++ D+LE
Sbjct: 2 ICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELE 61
Query: 103 VQLRTIIEEPAKDSDIKPFRLAKNLYKVCMNKTQIELQGLDHMKSILKHLGGWPVLEDLP 162
V L+ +++EP + DI + AK LY+ C+N++ I+ +G + + +L + GWPV +
Sbjct: 62 VVLKDVLQEPKTE-DIVAVQKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENW 120
Query: 163 QEPSETDSLADESKAIRKPQSSTAY 187
++ A+++ A +
Sbjct: 121 EQKYGASWTAEKAIAQLNSKYGKKV 145
Score = 86.7 bits (215), Expect = 3e-19
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 191 ICYSEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGDSWDEGSFSW 248
IC S CI +A++L+ NM+ + +PC DF+++ CG +L+ VIP+ S G+F
Sbjct: 2 ICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRY----GNFDI 55
Score = 49.3 bits (118), Expect = 8e-07
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 235 DKSGDSWDEGSFSWKG-SVYKFRRYGYSVDYFLDFSVGVNLKNSTERVIEFDQASLGL-S 292
+ + + SW Y ++ VG + KNS VI DQ LGL S
Sbjct: 115 VATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVNHVIHIDQPRLGLPS 174
Query: 293 REYLAK 298
R+Y
Sbjct: 175 RDYYEC 180
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 145 bits (368), Expect = 1e-39
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 46 SEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGQSSFSVISDQLEVQL 105
SE C+ S +LS+M+ +VDPC DF+ + CG +++ +PD S +FS + + + +
Sbjct: 1 SEACVSVTSSILSSMDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQAII 60
Query: 106 RTIIEEPAKDSDIKPFRLAKNLYKVCMNKTQIELQGLDHMKSILKHLGGWPVLEDL 161
+ ++E + R A+ Y+ CMN+T+IE + +++ LGGW +
Sbjct: 61 KHLLENSTASVS-EAERKAQVYYRACMNETRIEELRAKPLMELIERLGGWNITGPW 115
Score = 81.3 bits (201), Expect = 2e-17
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 194 SEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGDSW 241
SE C+ S +LS+M+ +VDPC DF+ + CG +++ +PD S
Sbjct: 1 SEACVSVTSSILSSMDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGT 48
Score = 49.3 bits (118), Expect = 7e-07
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 236 KSGDSWDEGSFSWKGSVYKFRRYGYSVDYFLDFSVGVNLKNSTERVIEFDQASLGL-SRE 294
W + +F + Y F V + KNS VI+ DQ+ LGL SR+
Sbjct: 110 NITGPWAKDNFQD---TLQVVTAHYRTSPFFSVYVSADSKNSNSNVIQVDQSGLGLPSRD 166
Query: 295 YL 296
Y
Sbjct: 167 YY 168
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 136 bits (345), Expect = 2e-36
Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 2/132 (1%)
Query: 34 QSSTAYSPKICYSEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGQSS 93
++ + LS+++ P D + GR+L E IP D++ +
Sbjct: 24 DLYDDDDKDHPFTMTLAIPSGIDLSHIDADARPQDDLFGHVNGRWLAEHEIPADRATDGA 83
Query: 94 FSVISDQLEVQLRTIIEEPAK--DSDIKPFRLAKNLYKVCMNKTQIELQGLDHMKSILKH 151
F + D+ E Q+R +I + ++ + + +LY +++ +E G+ + L
Sbjct: 84 FRSLFDRAETQVRDLIIQASQAGAAVGTDAQRIGDLYASFLDEEAVERAGVQPLHDELAT 143
Query: 152 LGGWPVLEDLPQ 163
+ +L
Sbjct: 144 IDSAADATELAA 155
Score = 79.7 bits (197), Expect = 7e-17
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 182 QSSTAYSPKICYSEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGDSW 241
++ + LS+++ P D + GR+L E IP D++ D
Sbjct: 24 DLYDDDDKDHPFTMTLAIPSGIDLSHIDADARPQDDLFGHVNGRWLAEHEIPADRATD-- 81
Query: 242 DEGSFSW 248
G+F
Sbjct: 82 --GAFRS 86
Score = 50.1 bits (120), Expect = 5e-07
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 246 FSWKGSVYKFRRYGYSVDYFLDFSVGVNLKNSTERVIEFDQASLGL-SREY 295
++ +R G + V + K+ST ++ F Q+ +GL Y
Sbjct: 151 TELAAALGTLQRAGVGG--GIGVYVDTDSKDSTRYLVHFTQSGIGLPDESY 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 4e-06
Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 53/193 (27%)
Query: 2 KHP-SLLPFTDLPQEPSETTDSLAD----ESKAIRKPQSSTA------YSPKICYSEG-C 49
+ LL T Q P+ T A +SK + ++ A Y+ ++
Sbjct: 1720 RSEKGLLSATQFTQ-PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 50 IHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGQSSFSVI---------SDQ 100
I + +++ FYR G ++ V P D+ G+S++ +I S
Sbjct: 1779 IESLVEVV------------FYR---GMTMQVAV-PRDELGRSNYGMIAINPGRVAASFS 1822
Query: 101 LEVQLRTIIEEPAKDSDIKPFRLAKNLYKVCMNK--TQI----ELQGLDHMKSILKHLGG 154
E L+ ++E K + + V N Q +L+ LD + ++L +
Sbjct: 1823 QEA-LQYVVERVGKRTG-------WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL 1874
Query: 155 WPV-LEDLPQEPS 166
+ + +L + S
Sbjct: 1875 QKIDIIELQKSLS 1887
Score = 37.7 bits (87), Expect = 0.005
Identities = 44/310 (14%), Positives = 81/310 (26%), Gaps = 122/310 (39%)
Query: 9 FTDLPQEPSETTDSLA--DESKAI--------------RKPQSSTAYSP--KICYSE--- 47
F + EP T+ A DE +P + +C +E
Sbjct: 37 FNKILPEP---TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 48 ----GC-IHT-ASKLLSNMNQSV----DPCQDFY--RFTCGRFLEETVIPDDKSGQSSFS 95
G IH A+KLL + ++ + +++ R R P DK S+
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR-------PFDKKSNSAL- 145
Query: 96 VISDQLEVQLRTIIEEPAKDSDIKPFRLAKNLYKVCMNKTQIELQGLDHMKSILKHLGGW 155
R + E A+ L + GG
Sbjct: 146 ---------FRAVGEGNAQ------------LVAIF---------------------GG- 162
Query: 156 PVLEDLPQEPSET--DSLADESKAIRKPQSSTAYSPKICYSEGCIHTASKLLSNMNQSVD 213
Q ++ + L D Y + I +++ LS + ++
Sbjct: 163 -------QGNTDDYFEELRD---------LYQTYHVLV---GDLIKFSAETLSELIRTTL 203
Query: 214 PCQDFYR--FTCGRFLEETVIPDDKSGDSW-DEGSFSWKGS-VYKFRRY-------GYSV 262
+ + +LE P + + S V + Y G++
Sbjct: 204 DAEKVFTQGLNILEWLEN---PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 263 DYFLDFSVGV 272
+ G
Sbjct: 261 GELRSYLKGA 270
Score = 30.8 bits (69), Expect = 0.60
Identities = 47/253 (18%), Positives = 70/253 (27%), Gaps = 96/253 (37%)
Query: 8 PFTDLPQEPSETTDSLADESKAIRKPQSSTAYSPKICYSEGCIHTASKLLSNMNQSVDPC 67
P T LP PS DSL + +EG S +LS N + +
Sbjct: 315 PNTSLP--PSILEDSLEN--------------------NEG---VPSPMLSISNLTQEQV 349
Query: 68 QDFYRFTCGRFLEETVIPDDKS-------GQSSFSVIS------DQLEVQLRTIIEEPAK 114
QD+ T P K G + V+S L + LR
Sbjct: 350 QDYVNKTNSHL------PAGKQVEISLVNGAKNL-VVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 115 DSDIKPF--RLAKNLYKVCMNKTQIELQGL--------DHMKS----ILKHLGG----W- 155
D PF R K + + L + I K L +
Sbjct: 403 DQSRIPFSER-----------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 156 ------PVL-----EDLPQEPSE--TDSLADESKAIRKP---QSSTAYSPK--ICYSEGC 197
PV DL + S ++ + D IR P +++T + + + G
Sbjct: 452 AKDIQIPVYDTFDGSDL-RVLSGSISERIVDC--IIRLPVKWETTTQFKATHILDFGPGG 508
Query: 198 IHTASKLLSNMNQ 210
L
Sbjct: 509 ASGLGVLTHRNKD 521
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 3e-04
Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 49/183 (26%)
Query: 5 SLLPFTDLPQEPSETTDSLADESKAIRKPQSSTAYSPKI-------CYSEGCIHTASKLL 57
SL+ F + + + L S ++P+ ST P I +E +H ++
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIV 450
Query: 58 S--NMNQSVD------PCQD--FYRF------TCG---------------RFLEETVIPD 86
N+ ++ D P D FY RFLE+ + D
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 87 DKSGQSSFSVISD--QLEVQLRTIIE-EPAKD---SDIKPF--RLAKNLYKV-CMNKTQI 137
+ +S S+++ QL+ I + +P + + I F ++ +NL + +I
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 138 ELQ 140
L
Sbjct: 571 ALM 573
Score = 34.8 bits (79), Expect = 0.035
Identities = 46/291 (15%), Positives = 91/291 (31%), Gaps = 62/291 (21%)
Query: 42 KICYSEGCIHTA-SKLLSNMNQSVDPCQDFYRFTCGRFLEETVIP------DDKSGQSSF 94
K+ Y T+ S SN+ + Q R R L+ +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR----RLLKSKPYENCLLVLLN------- 252
Query: 95 SV----ISDQLEVQLRTIIEEPAKDSDIKPFRLAKNLYKVCMNKTQIELQGLDHMKSIL- 149
V + + + ++ + + F A + ++ + L D +KS+L
Sbjct: 253 -VQNAKAWNAFNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLL 308
Query: 150 KHLGGWPVLEDLPQEPSETDSLADE--SKAIRKPQSSTAYSPKICYSEGCIHTASKLLSN 207
K+L P +DLP+E T+ +++IR ++ + KL +
Sbjct: 309 KYLDCRP--QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--------NCDKLTTI 358
Query: 208 MNQSV---DPC--QDFYRFTCGRFLEETVIPDDKSGDSWDEGSFSWKGSVY-KFRRYG-- 259
+ S+ +P + + F IP W + S V K +Y
Sbjct: 359 IESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 260 --------YSV-DYFLDFSVGVNLKNSTE---RVIEFDQASLGLSREYLAK 298
S+ +L+ V L+N +++ + L
Sbjct: 418 EKQPKESTISIPSIYLELK--VKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.090
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 12/41 (29%)
Query: 26 ESKAIRKPQSSTA-YSPKICYSEGCIHTASKLLSNMNQSVD 65
E +A++K Q+S Y+ +A L + +++
Sbjct: 18 EKQALKKLQASLKLYADD---------SAPALA--IKATME 47
Score = 32.2 bits (72), Expect = 0.090
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 12/41 (29%)
Query: 174 ESKAIRKPQSSTA-YSPKICYSEGCIHTASKLLSNMNQSVD 213
E +A++K Q+S Y+ +A L + +++
Sbjct: 18 EKQALKKLQASLKLYADD---------SAPALA--IKATME 47
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover,
non-active site, oxidoreductase; HET: UMP CB3 MTX NDP;
2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A*
3dl5_A* 3dl6_A* 2oip_A*
Length = 521
Score = 31.7 bits (72), Expect = 0.27
Identities = 12/81 (14%), Positives = 26/81 (32%)
Query: 71 YRFTCGRFLEETVIPDDKSGQSSFSVISDQLEVQLRTIIEEPAKDSDIKPFRLAKNLYKV 130
Y F E+ + + + I D +++ + P N +
Sbjct: 170 YDFMIFEKQEKKTLQNCDPARGQLKSIDDTVDLLGEIAGIRKMGNRHKFPKEEIYNTPSI 229
Query: 131 CMNKTQIELQGLDHMKSILKH 151
+ E Q LD + +L++
Sbjct: 230 RFGREHYEFQYLDLLSRVLEN 250
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 4.4
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 23/84 (27%)
Query: 168 TDSLADESKAIRKPQSSTAYSPKICYSEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFL 227
T D+ R P + C C K++ ++ C CG L
Sbjct: 3 TRESIDKRAGRRGPNLNIV---LTC--PECKVYPPKIVERFSEGDVVCAL-----CGLVL 52
Query: 228 EETVIPDDKSGDSWDEGS----FS 247
+ ++ D S FS
Sbjct: 53 SDKLV---------DTRSEWRTFS 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 27.3 bits (61), Expect = 5.7
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 107 TIIEEPAKDSDIKPFRLAKNLYKVCMNKTQI-ELQGLDHMKSILKHL 152
I P I K + K + + + + S + +
Sbjct: 6 ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNS-IDQI 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.392
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,329,224
Number of extensions: 240661
Number of successful extensions: 493
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 24
Length of query: 298
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 205
Effective length of database: 4,105,140
Effective search space: 841553700
Effective search space used: 841553700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)