RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12577
         (298 letters)



>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 696

 Score =  148 bits (373), Expect = 8e-41
 Identities = 46/135 (34%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 43  ICYSEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGQSSFSVISDQLE 102
           IC S  CI +A++L+ NM+ + +PC DF+++ CG +L+  VIP+  S   +F ++ D+LE
Sbjct: 2   ICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELE 61

Query: 103 VQLRTIIEEPAKDSDIKPFRLAKNLYKVCMNKTQIELQGLDHMKSILKHLGGWPVLEDLP 162
           V L+ +++EP K  DI   + AK LY+ C+N++ I+ +G + +  +L  + GWPV  +  
Sbjct: 62  VVLKDVLQEP-KTEDIVAVQKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENW 120

Query: 163 QEPSETDSLADESKA 177
           ++       A+++ A
Sbjct: 121 EQKYGASWTAEKAIA 135



 Score = 85.5 bits (210), Expect = 4e-19
 Identities = 20/53 (37%), Positives = 34/53 (64%)

Query: 191 ICYSEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETVIPDDKSGDSWDE 243
           IC S  CI +A++L+ NM+ + +PC DF+++ CG +L+  VIP+  S     +
Sbjct: 2   ICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFD 54



 Score = 31.5 bits (70), Expect = 0.11
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 225 RFLEETVIPDDKSGDSWDEGSFSWK-GSVYKFRRYGYSVDYFLDFSVGVNLKNSTERVIE 283
           + L +       + +   +   SW            Y     ++  VG + KNS   VI 
Sbjct: 105 KLLPDIYGWPVATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVNHVIH 164

Query: 284 FDQASLGLSREYL 296
            DQ  LGL     
Sbjct: 165 IDQPRLGLPSRDY 177


>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 363

 Score = 28.0 bits (61), Expect = 1.5
 Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 4/80 (5%)

Query: 143 DHMKSILKHLGGWPVLEDLPQEPSETDSLADESKAIRKPQSSTAYSPKICYSEGCIHTAS 202
           +  + +L        +  +P         +D +    K      ++P +   EG   T  
Sbjct: 267 EMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEK----LGWAPNMRLKEGLRITYF 322

Query: 203 KLLSNMNQSVDPCQDFYRFT 222
            +   + +      D   + 
Sbjct: 323 WIKEQIEKEKAKGSDVSLYG 342


>d2gx9a1 d.299.1.1 (A:79-205) Non-structural protein NS1 C-terminal
           domain {Influenza A virus [TaxId: 11320]}
          Length = 127

 Score = 26.4 bits (58), Expect = 2.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 91  QSSFSVISDQLE--VQLRTIIEEPAKDSDIKPF 121
           +++FSVI D+LE  + LR   EE A   +I P 
Sbjct: 53  KANFSVIFDRLETLILLRAFTEEGAIVGEISPL 85


>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 321

 Score = 25.9 bits (57), Expect = 5.6
 Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 46  SEGCIHTASKLLSNMNQSVDPCQDFYRFTCGRFLEETV-IPDDKSGQSSFSVISDQLEVQ 104
           ++  +     LL N+ Q     Q FY+      L+    +  D S  +  ++ +  +   
Sbjct: 184 ADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHA-SILAY 242

Query: 105 LRTIIEEPAKDSDIKP 120
           +  ++EE    + + P
Sbjct: 243 MFNLVEEGKISTSLNP 258


>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
           (UDP-galactose 4-epimerase) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 346

 Score = 25.8 bits (55), Expect = 8.0
 Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 4/55 (7%)

Query: 7   LPFTDLPQEPSETTDSLADESKAIRKPQSSTAYSPKICYSEGCIHTASKLLSNMN 61
           +P+  + +   +     A+ S A  +      ++  +     C         N +
Sbjct: 292 IPYKVVARREGDVAACYANPSLAQEE----LGWTAALGLDRMCEDLWRWQKQNPS 342


>d1b35a_ b.121.4.1 (A:) Insect picorna-like virus coat proteins
           {Cricket paralysis virus [TaxId: 12136]}
          Length = 260

 Score = 25.4 bits (55), Expect = 8.8
 Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 4/65 (6%)

Query: 233 PDDKSGDSWDEGSFSWKGSVYKFRRYGYSVDYFLDFSVGVN----LKNSTERVIEFDQAS 288
           P      + +   F +   +Y F R    +    +   G        N T  V  F+   
Sbjct: 78  PTKTLTSTRNYTQFDYYYYLYAFWRGSMRIKMVAETQDGTGTPRKKTNFTWFVRMFNSLQ 137

Query: 289 LGLSR 293
              + 
Sbjct: 138 DSFNS 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,081,340
Number of extensions: 49317
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 8
Length of query: 298
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,240,546
Effective search space: 264236298
Effective search space used: 264236298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)