BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12578
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 150 bits (379), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/83 (90%), Positives = 77/83 (92%)
Query: 66 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 125
VVELPKTDEGLGFN+MGGKEQNSPIYISR+IPGGVADRHGGLKRGDQLLSVNGVSVEGE
Sbjct: 8 VVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
Query: 126 HGKAVELLKQAQRSVKLVVRYTP 148
H KAVELLK AQ SVKLVVR P
Sbjct: 68 HEKAVELLKAAQGSVKLVVRSGP 90
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR V L K GLGFN++GG E I++S I+ GG AD G L+RGDQ+LSVNG+ + G
Sbjct: 4 PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 62
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRF 158
H +A LK A ++V ++ +Y P+ E +
Sbjct: 63 ASHEQAAAALKGAGQTVTIIAQYQPEDYARFEAKI 97
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR + L K GLGFN++GG E I++S I+ GG AD G L+RGD++LSVNGV++
Sbjct: 13 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 71
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 155
H +A LK+A +SV +V +Y P+ E
Sbjct: 72 ATHEQAAAALKRAGQSVTIVAQYRPEEYSRFE 103
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR + L K GLGFN++GG E I++S I+ GG AD G L+RGD++LSVNGV++
Sbjct: 16 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 155
H +A LK+A +SV +V +Y P+ E
Sbjct: 75 ATHEQAAAALKRAGQSVTIVAQYRPEEYSRFE 106
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR + + + GLGFN++GG E I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 308 PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 366
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQR 162
H +A LK A ++V ++ +Y P+ E + R
Sbjct: 367 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLR 405
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 59 EGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQL 113
EG + L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +
Sbjct: 55 EGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 114
Query: 114 LSVNGVSVEGEDHGKAVELLKQAQRSVKL-VVRYTPKVLEEMEMRFDK 160
L VN V V H AVE LK+A V+L V+R P + ME++ K
Sbjct: 115 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 162
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD++L+VN V +
Sbjct: 158 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 217
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H AV LK V L V
Sbjct: 218 EDVMHEDAVAALKNTYDVVYLKV 240
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR + + + GLGFN++GG E I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 15 PRRIVIHRGSTGLGFNIIGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 155
H +A LK A ++V ++ +Y P+ E
Sbjct: 74 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 105
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR + + + GLGFN++GG E I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 12 PRRIVIHRGSTGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 70
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 157
H +A LK A ++V ++ +Y P+ E +
Sbjct: 71 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR + + + GLGFN++GG E I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 15 PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 155
H +A LK A ++V ++ +Y P+ E
Sbjct: 74 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 105
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR + + + GLGFN++GG E I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 7 PRRIVIHRGSTGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 65
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 155
H +A LK A ++V ++ +Y P+ E
Sbjct: 66 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 97
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 67 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 126
+ L + + G GF ++GG E PIYI I+P G AD G L+ GD+L+SV+G V G+ H
Sbjct: 6 IFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSH 65
Query: 127 GKAVELLKQA--QRSVKLVVRYT 147
V+L++QA Q V L VR T
Sbjct: 66 QLVVQLMQQAAKQGHVNLTVRQT 88
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
+V+ L + EGLG ++ GGKE PI IS I PG ADR GGL GD +L+VNGV++
Sbjct: 12 KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 71
Query: 125 DHGKAVELLKQAQRSVKLVVRYT 147
H +AV +L Q + ++ V Y
Sbjct: 72 KHKEAVTILSQQRGEIEFEVVYV 94
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
+V+ L + EGLG ++ GGKE PI IS I PG ADR GGL GD +L+VNGV++
Sbjct: 5 KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 64
Query: 125 DHGKAVELLKQAQRSVKLVVRYT 147
H +AV +L Q + ++ V Y
Sbjct: 65 KHKEAVTILSQQRGEIEFEVVYV 87
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
+V+ L + EGLG ++ GGKE PI IS I PG ADR GGL GD +L+VNGV++
Sbjct: 30 KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 89
Query: 125 DHGKAVELLKQAQRSVKLVVRYT 147
H +AV +L Q + ++ V Y
Sbjct: 90 KHKEAVTILSQQRGEIEFEVVYV 112
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 66 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 125
VEL + +G GF++ GG+E N +Y+ R+ G A+R G ++ GD++L +NG + +
Sbjct: 27 TVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMK 86
Query: 126 HGKAVELLKQAQRSVKLVVR 145
H +A+EL+K R V+L ++
Sbjct: 87 HSRAIELIKNGGRRVRLFLK 106
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 75 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 134
GLG ++ GG+E PI IS+I PG AD+ L+ GD +LSVNG + H +AV+ LK
Sbjct: 16 GLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALK 75
Query: 135 QAQRSVKLVVRYTPKV 150
+A + V L V++ +V
Sbjct: 76 RAGKEVLLEVKFIREV 91
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 64 PRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
PR+V L K LGFN+ GGK I+IS++IP A R GL+ GDQ+L+VN V +
Sbjct: 16 PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHR-AGLQEGDQVLAVNDVDFQ 74
Query: 123 GEDHGKAVELLKQAQRSVKLVVRY 146
+H KAVE+LK A R + + VR+
Sbjct: 75 DIEHSKAVEILKTA-REISMRVRF 97
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 67 VELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
VEL KTD LG +V GG ++ IY+ IIP G A+ G + +GD++L+VNGVS+EG
Sbjct: 16 VELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 75
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
H +AVE L+ + V L++
Sbjct: 76 ATHKQAVETLRNTGQVVHLLL 96
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 67 VELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
VEL KTD LG +V GG ++ IY+ IIP G A+ G + +GD++L+VNGVS+EG
Sbjct: 8 VELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 67
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
H +AVE L+ + V L++
Sbjct: 68 ATHKQAVETLRNTGQVVHLLL 88
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 13/93 (13%)
Query: 64 PRVVELPKTDEGLGFNVMG-----------GKEQNSPI-YISRIIPGGVADRHGGLKRGD 111
PRVV + K++ G GFNV G E +P+ ++S ++PGG ADR G+++GD
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADR-AGVRKGD 65
Query: 112 QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144
++L VNGV+VEG H + V+L++ ++ + L V
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 13/93 (13%)
Query: 64 PRVVELPKTDEGLGFNVMG-----------GKEQNSPI-YISRIIPGGVADRHGGLKRGD 111
PRVV + K++ G GFNV G E +P+ ++S ++PGG ADR G+++GD
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADR-AGVRKGD 65
Query: 112 QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144
++L VNGV+VEG H + V+L++ ++ + L V
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 65 RVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ + L + +GLGF+++GG + PIY+ + G A G LKRGDQ+++VNG S+
Sbjct: 27 KSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSL 86
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
EG H +AV +LK+ + +V L+V
Sbjct: 87 EGVTHEEAVAILKRTKGTVTLMV 109
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 13/93 (13%)
Query: 64 PRVVELPKTDEGLGFNVMG-----------GKEQNSPI-YISRIIPGGVADRHGGLKRGD 111
PRVV + K++ G GFNV G E +P+ ++S ++PGG ADR G+++GD
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADR-AGVRKGD 65
Query: 112 QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144
++L VNGV+VEG H + V+L++ ++ + L V
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 67 VELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
VEL K D LG +V GG ++ IY+ +IP G A+ G + +GD++L+VNGVS+EG
Sbjct: 9 VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
H +AVE L+ + V L++
Sbjct: 69 ATHKQAVETLRNTGQVVHLLL 89
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 65 RVVELPKTDEG--LGFNVMGG----KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
R VE+ EG GF + GG + ++ P+ I+ + PGG ADR G +K GD+LLSV+G
Sbjct: 3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG 62
Query: 119 VSVEGEDHGKAVELLKQAQRSVKLVVRY 146
+ + G H +A+ +LKQ + L++ Y
Sbjct: 63 IRLLGTTHAEAMSILKQCGQEAALLIEY 90
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 12/112 (10%)
Query: 61 HAHPR------VVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKR 109
H HPR + L + + GLGF++ GG + + I+I++IIPGG A + G L+
Sbjct: 4 HHHPRGSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRV 63
Query: 110 GDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL-VVRYTPKVLEEMEMRFDK 160
D +L VN V V H AVE LK+A V+L V+R P + ME++ K
Sbjct: 64 NDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 115
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD++L+VN V +
Sbjct: 111 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 170
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H AV LK V L V
Sbjct: 171 EDVMHEDAVAALKNTYDVVYLKV 193
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR V L + GLGFN++GG E I+IS I+ GG AD G L++GD+++SVN V +
Sbjct: 8 PRKVVLHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRA 66
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPK 149
H +A LK A ++V +V +Y P+
Sbjct: 67 ASHEQAAAALKNAGQAVTIVAQYRPE 92
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 67 VELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
VEL K D LG +V GG ++ IY+ +IP G A+ G + +GD++L+VNGVS+EG
Sbjct: 9 VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
H +AVE L+ + V L++
Sbjct: 69 ATHKQAVETLRNTGQVVHLLL 89
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Query: 65 RVVELPKTDEG--LGFNVMGG----KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
R VE+ EG GF + GG + ++ P+ I+ + PGG ADR G +K GD+LLSV+G
Sbjct: 106 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDG 165
Query: 119 VSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 152
+ + G H +A+ +LKQ + L++ Y V++
Sbjct: 166 IRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMD 199
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 66 VVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
VVEL K + LG V GG +++ +S + GG+A R L GD + +VNG+++
Sbjct: 10 VVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKF 69
Query: 125 DHGKAVELLKQAQRSVKLVVRY 146
H + + LLK V L V Y
Sbjct: 70 RHDEIISLLKNVGERVVLEVEY 91
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 66 VVELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 119
V L +++ GLGF++ GGK ++ I++SRI GG A R G L+ GD++LS+NGV
Sbjct: 10 VACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGV 69
Query: 120 SVEGEDHGKAVELLKQAQRSVKLVV 144
V H AV LL A ++ L++
Sbjct: 70 DVTEARHDHAVSLLTAASPTIALLL 94
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
H VEL GLGF ++GGK S + + I+PGG+ADR G L+ GD +L + G +V
Sbjct: 14 GHVEEVELINDGSGLGFGIVGGK--TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNV 71
Query: 122 EGEDHGKAVELLKQAQRSVKLVVRYTPK 149
+G + ++L+ SV+++V P
Sbjct: 72 QGMTSEQVAQVLRNCGNSVRMLVARDPA 99
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 67 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ L + + GLGF++ GG + +S I+I++II GG A + G L+ D +L VN V V
Sbjct: 15 ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDV 74
Query: 122 EGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEM 154
H KAVE LK+A V+L V+ V E++
Sbjct: 75 RDVTHSKAVEALKEAGSIVRLYVKRRKPVSEKI 107
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 67 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +L VN V V
Sbjct: 9 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 68
Query: 122 EGEDHGKAVELLKQAQRSVKL-VVRYTPKVLEEMEMRFDK 160
H AVE LK+A V+L V+R P + ME++ K
Sbjct: 69 REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 108
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD++L+VN V +
Sbjct: 104 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 163
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H AV LK V L V
Sbjct: 164 EDVMHEDAVAALKNTYDVVYLKV 186
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 67 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +L VN V V
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 122 EGEDHGKAVELLKQAQRSVKL-VVRYTPKVLEEMEMRFDK 160
H AVE LK+A V+L V+R P + ME++ K
Sbjct: 66 REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 105
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD++L+VN V +
Sbjct: 101 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 160
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H AV LK V L V
Sbjct: 161 EDVMHEDAVAALKNTYDVVYLKV 183
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 66 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 125
V++ K +G GF++ GG+E +Y+ R+ G A R+G ++ GDQ++ +NG S
Sbjct: 14 TVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT 73
Query: 126 HGKAVELLKQAQRSVKLVVR 145
H +A+EL+K R V+L+++
Sbjct: 74 HARAIELIKSGGRRVRLLLK 93
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 67 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 126
V L + + G GF ++GG E PI I +I G ADR G L GD+L+ V+G+ V G+ H
Sbjct: 13 VHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72
Query: 127 GKAVELLKQAQRS--VKLVVR 145
++L+ A R+ V L VR
Sbjct: 73 RYVIDLMHHAARNGQVNLTVR 93
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 60 GHAHPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
G R V + K D G LG ++ GG+E PI IS+I G AD+ L GD +LSVNG
Sbjct: 1 GSLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60
Query: 119 VSVEGEDHGKAVELLKQAQRSVKLVVRY 146
+ H +AV+ LK+ + V L V+Y
Sbjct: 61 EDLSSATHDEAVQALKKTGKEVVLEVKY 88
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 67 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ L + + GLGF++ GG + + I+I++IIPGG A G L+ D +L VN V V
Sbjct: 13 ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 72
Query: 122 EGEDHGKAVELLKQAQRSVKLVVR 145
H KAVE LK+A V+L VR
Sbjct: 73 SEVSHSKAVEALKEAGSIVRLYVR 96
>pdb|3LRA|A Chain A, Structural Basis For Assembling A Human Tripartite Complex
Dlg1-Mpp7- Mals3
Length = 254
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 31/36 (86%)
Query: 1 GEVPVTKLSALQKVLQSDFFNCVRDVYEHVYETVDI 36
GEVP KL ALQ+VLQS+F N VR+VYEHVYETVDI
Sbjct: 218 GEVPPQKLQALQRVLQSEFCNAVREVYEHVYETVDI 253
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 67 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ L + GLGFN++GG +Q +S IY+SRI G A G L+ GD++LSVNG +
Sbjct: 13 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 72
Query: 122 EGEDHGKAVELLKQAQRSVKLVVRY 146
+ H AV+L + A +V L V++
Sbjct: 73 KNLLHQDAVDLFRNAGYAVSLRVQH 97
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 67 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ L + GLGFN++GG +Q +S IY+SRI G A G L+ GD++LSVNG +
Sbjct: 11 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 70
Query: 122 EGEDHGKAVELLKQAQRSVKLVVRY 146
+ H AV+L + A +V L V++
Sbjct: 71 KNLLHQDAVDLFRNAGYAVSLRVQH 95
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 65 RVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
R V + K D G LG ++ GG+E PI IS+I G AD+ L GD +LSVNG +
Sbjct: 2 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 61
Query: 124 EDHGKAVELLKQAQRSVKLVVRY 146
H +AV+ LK+ + V L V+Y
Sbjct: 62 ATHDEAVQALKKTGKEVVLEVKY 84
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 65 RVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
R V + K D G LG ++ GG+E PI IS+I G AD+ L GD +LSVNG +
Sbjct: 79 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 138
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPKV 150
H +AV+ LK+ + V L V+Y +V
Sbjct: 139 ATHDEAVQALKKTGKEVVLEVKYMKEV 165
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 65 RVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
R V + K D G LG ++ GG+E PI IS+I G AD+ L GD +LSVNG +
Sbjct: 2 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 61
Query: 124 EDHGKAVELLKQAQRSVKLVVRY 146
H +AV+ LK+ + V L V+Y
Sbjct: 62 ATHDEAVQALKKTGKEVVLEVKY 84
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 67 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ L + GLGFN++GG +Q +S IY+SRI G A G L+ GD++LSVNG +
Sbjct: 21 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 80
Query: 122 EGEDHGKAVELLKQAQRSVKLVVRYTPKV 150
+ H AV+L + A +V L V++ +V
Sbjct: 81 KNLLHQDAVDLFRNAGYAVSLRVQHRLQV 109
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 67 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ L + + GLGF++ GG + +S I+I++II GG A + G L+ D +L VN V
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADV 64
Query: 122 EGEDHGKAVELLKQAQRSVKLVVR 145
H KAVE LK+A V+L V+
Sbjct: 65 RDVTHSKAVEALKEAGSIVRLYVK 88
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Query: 67 VELPKTDEGLGFNVM-----GGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
VEL KTD LG +V GG ++ IY+ IIP G A+ G + +GD++L+VNG
Sbjct: 8 VELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNG 67
Query: 119 VSVEGEDHGKAVELLKQAQRSVKLVV 144
VS+EG H +AVE L+ + V L++
Sbjct: 68 VSLEGATHKQAVETLRNTGQVVHLLL 93
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 75 GLGFNVMGGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
GLGF++ GG + +N I + R+ P G+A + G +++G+++LS+NG S++G H A+ +L
Sbjct: 28 GLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87
Query: 134 KQAQRSVKLVV---RYTPKVLEEME 155
+QA+ + V+ + TP+ + ++
Sbjct: 88 RQAREPRQAVIVTRKLTPEAMPDLN 112
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +L VN V V
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
H AVE LK+A V+L V
Sbjct: 66 REVTHSAAVEALKEAGSIVRLYV 88
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +L VN V V
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
H AVE LK+A V+L V
Sbjct: 65 REVTHSAAVEALKEAGSIVRLYV 87
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
+ L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +L VN V V
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
H AVE LK+A V+L V
Sbjct: 65 REVTHSAAVEALKEAGSIVRLYV 87
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 61 HAHPRVVELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLS 115
H H +V P+ +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+
Sbjct: 2 HHHHHLV--PRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 59
Query: 116 VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDK 160
VN V++E H +AV LK V L V + ME++ K
Sbjct: 60 VNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGSGEKIMEIKLIK 104
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN VS+
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSL 66
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H +AV LK V L V
Sbjct: 67 EEVTHEEAVTALKNTSDFVYLKV 89
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 63 HPRVVELPKT-DEGLGFNVMGG---KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
H +VV + K E LG V GG +E + PIY+ + PGGV R G +K GD LL+V+G
Sbjct: 24 HEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDG 83
Query: 119 VSVEGEDHGKAVELLKQAQRSVKL 142
V + +AV LLK+ S+ L
Sbjct: 84 VELTEVSRSEAVALLKRTSSSIVL 107
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 67 VELPKTDEGLGFNVM-----GGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
VEL K D LG +V GG ++ IY+ +IP G A+ G + +GD++L+VNG
Sbjct: 13 VELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 72
Query: 119 VSVEGEDHGKAVELLKQAQRSVKLVV 144
VS+EG H +AVE L+ + V L++
Sbjct: 73 VSLEGATHKQAVETLRNTGQVVHLLL 98
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR V L + GLGFN++GG E I+IS I+ GG AD G L++GD+++SVN V +
Sbjct: 5 PRKVVLHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRA 63
Query: 124 EDHGKAVELLKQAQRSVKLVVR 145
H +A LK A ++V +V +
Sbjct: 64 ASHEQAAAALKNAGQAVTIVAQ 85
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V++
Sbjct: 12 IKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 71
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H +AV LK V L V
Sbjct: 72 EEVTHEEAVTALKNTSDFVYLKV 94
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 66
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H +AV LK V L V
Sbjct: 67 EEVTHEEAVTALKNTSDFVYLKV 89
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 66 VVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
++E+ K GLG +++GGK+ + I I + G A R G L GDQ+L VNGV +
Sbjct: 20 IIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNS 79
Query: 125 DHGKAVELLKQAQRSVKLVV 144
H +A+ L+Q + V+LVV
Sbjct: 80 SHEEAITALRQTPQKVRLVV 99
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 15 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 74
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H +AV LK V L V
Sbjct: 75 EEVTHEEAVTALKNTSDFVYLKV 97
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGL 66
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H +AV LK V L V
Sbjct: 67 EEVTHEEAVTALKNTSDFVYLKV 89
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 13 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 72
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H +AV LK V L V
Sbjct: 73 EEVTHEEAVTALKNTSDFVYLKV 95
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 3 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 62
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H +AV LK V L V
Sbjct: 63 EEVTHEEAVTALKNTSDFVYLKV 85
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL VN S+
Sbjct: 28 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H +AV +LK V L V
Sbjct: 88 EEVTHEEAVAILKNTSEVVYLKV 110
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 2 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 61
Query: 122 EGEDHGKAVELLKQAQRSVKL 142
E H +AV LK V L
Sbjct: 62 EEVTHEEAVTALKNTSDFVYL 82
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 65 RVVEL--PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
R+V L K EGLGF++ GG E IY+S + PG +A++ GL+ GDQ+L VN S+
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLA 68
Query: 123 GEDHGKAVELLKQAQRSV 140
H +AV+ LK +++ V
Sbjct: 69 RVTHAEAVKALKGSKKLV 86
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 67 VELPKTDEGLGFNV------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 120
++L K EGLGF++ +GG ++PIY+ I+P G A + G LK GD+L+ VNGV
Sbjct: 15 IQLKKGTEGLGFSITSRDVTIGG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 71
Query: 121 VEGEDHGKAVELLKQAQR--SVKLVV 144
+ G+ + V LL+ + +V L+V
Sbjct: 72 LAGKSQEEVVSLLRSTKMEGTVSLLV 97
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 66 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 125
VEL + LG + G +E PI IS + GG+A+R G + GD++L++N S++G+
Sbjct: 8 TVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKP 67
Query: 126 HGKAVELLKQAQRSVKLVVR 145
+A+ LL+ A +V L ++
Sbjct: 68 LSEAIHLLQMAGETVTLKIK 87
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 9/77 (11%)
Query: 67 VELPKTDEGLGFNV------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 120
++L K EGLGF++ +GG ++PIY+ I+P G A + G LK GD+L+ VNGV
Sbjct: 9 IQLKKGTEGLGFSITSRDVTIGG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 65
Query: 121 VEGEDHGKAVELLKQAQ 137
+ G+ + V LL+ +
Sbjct: 66 LAGKSQEEVVSLLRSTK 82
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 67 VELPKTDEGLGFNV------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 120
++L K EGLGF++ +GG ++PIY+ I+P G A + G LK GD+L+ VNGV
Sbjct: 34 IQLKKGTEGLGFSITSRDVTIGG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 90
Query: 121 VEGEDHGKAVELLKQAQR--SVKLVV 144
+ G+ + V LL+ + +V L+V
Sbjct: 91 LVGKSQEEVVSLLRSTKMEGTVSLLV 116
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY++ I+ GG A + G L+ GD+LL+VN V +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGL 66
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H +AV LK V L V
Sbjct: 67 EEVTHEEAVTALKNTSDFVYLKV 89
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 67 VELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
+E P T GLGF+V+ + QN I++ + PG VADR LK DQ+L++N ++
Sbjct: 31 IERPSTG-GLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQ 89
Query: 124 E-DHGKAVELLKQAQRSVKLVVRYTP 148
H +A+ LL+Q S++L+V P
Sbjct: 90 NISHQQAIALLQQTTGSLRLIVAREP 115
>pdb|3UIT|A Chain A, Overall Structure Of PatjPALS1MALS COMPLEX
pdb|3UIT|B Chain B, Overall Structure Of PatjPALS1MALS COMPLEX
pdb|3UIT|C Chain C, Overall Structure Of PatjPALS1MALS COMPLEX
pdb|3UIT|D Chain D, Overall Structure Of PatjPALS1MALS COMPLEX
Length = 265
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 1 GEVPVTKLSALQKVLQSDFFNCVRDVYEHVYETVDIQGS 39
GE+P KL ALQ+VLQS F + +R+VYE +Y+T+DI GS
Sbjct: 227 GELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGS 265
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR+ L + ++G GF++ G K + +I R+ PG A+ L+ GD+L+ VNGV+VEG
Sbjct: 2 PRLCRLVRGEQGYGFHLHGEKGRRGQ-FIRRVEPGSPAE-AAALRAGDRLVEVNGVNVEG 59
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
E H + V+ +K + +L+V
Sbjct: 60 ETHHQVVQRIKAVEGQTRLLV 80
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 63 HPRVVELPKTDEG-LGFNVMGGKEQNSP---IYISRIIPGGVADRHGGLKRGDQLLSVNG 118
H V EL K G LGF+V+G + +N I++ I G VA R G LK DQ+L++NG
Sbjct: 20 HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79
Query: 119 VSVEGE-DHGKAVELLKQAQRSVKLVV 144
+++ H +A+ +L++A+ +V+LV+
Sbjct: 80 QALDQTITHQQAISILQKAKDTVQLVI 106
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
V L K +GLGF++ GG Q+ P IYI++II GG A + G L+ GD+LL+VN ++
Sbjct: 7 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
+ H +AV LK V L V
Sbjct: 67 QDVRHEEAVASLKNTSDMVYLKV 89
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 67 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD++L+VN V +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 66
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E H AV LK V L V
Sbjct: 67 EDVMHEDAVAALKNTYDVVYLKV 89
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 65 RVVELPK--TDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 119
R VE+ K TD LG ++ GG + PI+I+ + P GVA + L+ GD+++++ G
Sbjct: 26 RTVEMKKGPTDS-LGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT 84
Query: 120 SVEGEDHGKAVELLKQAQRSVKLVV 144
S EG H +AV LLK A S+++ V
Sbjct: 85 STEGMTHTQAVNLLKNASGSIEMQV 109
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
EGLG +V GG E ++IS +I GG AD GL+ GD+++ +NG S+ H + + L+
Sbjct: 96 EGLGLSVRGGLEFGCGLFISHLIKGGQADS-VGLQVGDEIVRINGYSISSCTHEEVINLI 154
Query: 134 KQAQRSVKLVVRY 146
+ +++V + VR+
Sbjct: 155 R-TEKTVSIKVRH 166
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 75 GLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 128
GLG ++ GGK + I+ISR+ G A R G++ GD+LL VNGV+++G +H +
Sbjct: 15 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDKLLEVNGVALQGAEHHE 73
Query: 129 AVELLKQAQRSVKLVV 144
AVE L+ A +V++ V
Sbjct: 74 AVEALRGAGTAVQMRV 89
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 61 HAHPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 116
H P ++ + K G+G +++ K + IY+ ++ GG AD G L GDQLLSV
Sbjct: 7 HKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66
Query: 117 NGVSVEGEDHGKAVELLKQAQRSVKLVV 144
+G S+ G +A EL+ + V L V
Sbjct: 67 DGRSLVGLSQERAAELMTRTSSVVTLEV 94
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 65 RVVELPKTDEGLGFNVMGGKEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVS 120
++VEL K +GLGF+++ ++ P I I ++ GVA+R GGL GD+L+SVN
Sbjct: 17 KIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYC 76
Query: 121 VEGEDHGKAVELLKQ 135
++ +AVE+LK
Sbjct: 77 LDNTSLAEAVEILKA 91
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 71 KTDEGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
K +EG GF ++ G P I RII G ADR LK GD++L+VNG S+
Sbjct: 19 KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIIN 78
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPK 149
H V+L+K A SV L R P+
Sbjct: 79 MPHADIVKLIKDAGLSVTL--RIIPQ 102
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 75 GLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 128
GLG ++ GGK + I+ISR+ G A R G ++ GD+LL VNGV+++G +H +
Sbjct: 27 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHE 85
Query: 129 AVELLKQAQRSVKLVV 144
AVE L+ A +V++ V
Sbjct: 86 AVEALRGAGTAVQMRV 101
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PRVV + K G GF + G EQ I I I PG A+ GLK D +++VNG SVE
Sbjct: 6 PRVVVIKKGSNGYGFYLRAGPEQKGQI-IKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEA 63
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
DH VE++++ L+V
Sbjct: 64 LDHDGVVEMIRKGGDQTTLLV 84
>pdb|1Y74|A Chain A, Solution Structure Of Mlin-2MLIN-7 L27 Domain Complex
pdb|1Y74|C Chain C, Solution Structure Of Mlin-2MLIN-7 L27 Domain Complex
Length = 57
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 1 GEVPVTKLSALQKVLQSDFFNCVRDVYEHVYETVDI 36
GE+P KL ALQ+VLQS F + +R+VYE +Y+T+DI
Sbjct: 21 GELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDI 56
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 69 LPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
L + + GLGF++ GG + + I+I++IIPGG A G L D +L VN V V
Sbjct: 10 LERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSE 69
Query: 124 EDHGKAVELLKQA 136
H +AVE LK+A
Sbjct: 70 VVHSRAVEALKEA 82
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
LGF+V GG E I++S++ G A+R GL GD++ VNG+S+E G AV++L
Sbjct: 24 LGFSVRGGSEHGLGIFVSKVEEGSSAER-AGLCVGDKITEVNGLSLESTTMGSAVKVLTS 82
Query: 136 AQRSVKLVVR 145
+ R + ++VR
Sbjct: 83 SSR-LHMMVR 91
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR V++ K E LG +++ G++ IY+S++ G +A + GL+ GDQLL NG+++
Sbjct: 20 PRHVKVQKGSEPLGISIVSGEK--GGIYVSKVTVGSIAHQ-AGLEYGDQLLEFNGINLRS 76
Query: 124 EDHGKAVELLKQAQRSVKLVVRYTPKV 150
+A ++ Q ++ ++ +Y P V
Sbjct: 77 ATEQQARLIIGQQCDTITILAQYNPHV 103
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
+GLG +++G K ++ +++S I+ GG+AD G L +GDQ+L VNG V LL
Sbjct: 16 KGLGLSIVG-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALL 74
Query: 134 KQAQRSVKL 142
K + +V L
Sbjct: 75 KCSLGTVTL 83
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PRVV + K G GF + G EQ I I I PG A+ GLK D +++VNG SVE
Sbjct: 3 PRVVVIKKGSNGYGFYLRAGPEQKGQI-IKDIEPGSPAE-AAGLKNNDLVVAVNGKSVEA 60
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
DH VE++++ L+V
Sbjct: 61 LDHDGVVEMIRKGGDQTTLLV 81
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 66 VVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
+E+ K GLG +++GG + I I + G A + G L GDQ+L VNG+ +
Sbjct: 7 TIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKA 66
Query: 125 DHGKAVELLKQAQRSVKLVV 144
H +A+ +L+Q + V+L +
Sbjct: 67 THDEAINVLRQTPQRVRLTL 86
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 69 LPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 128
L K++ G GF ++GG E + + + +IP G A + G ++ GD ++ +N V V G H
Sbjct: 25 LKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD 84
Query: 129 AVELLKQAQ--RSVKLVV 144
V+L + +SV LV+
Sbjct: 85 VVKLFQSVPIGQSVNLVL 102
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 63 HPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
P ++ + K G+G +++ K + IY+ ++ GG AD G L GDQLLSV+G
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 119 VSVEGEDHGKAVELLKQAQRSVKL 142
S+ G +A EL+ + V L
Sbjct: 63 RSLVGLSQERAAELMTRTSSVVTL 86
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 63 HPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
P ++ + K G+G +++ K + IY+ ++ GG AD G L GDQLLSV+G
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 119 VSVEGEDHGKAVELLKQAQRSVKL 142
S+ G +A EL+ + V L
Sbjct: 63 RSLVGLSQERAAELMTRTSSVVTL 86
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 66 VVELPKTDEGLGFNVMGGKEQNS-PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
++EL K GLG ++ G K+++ I++ I P G A G ++ GD+LL +N + G
Sbjct: 28 IIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGR 87
Query: 125 DHGKAVELLKQAQRSVKLVVRYTPKVLEEM 154
H A ++K A VKLV + +M
Sbjct: 88 SHQNASAIIKTAPSKVKLVFIRNEDAVNQM 117
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
+PR +L K EG + E+++ ++ R+I G GL GD++L +NGV V+
Sbjct: 13 NPRECKLSKQ-EGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVD 71
Query: 123 GEDHGKAVELLKQAQRSVKLVV 144
E+H + VEL++++ SV L+V
Sbjct: 72 KEEHAQVVELVRKSGNSVTLLV 93
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 64 PRVVELPK-TDEGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQL 113
PR+VE+ + + LG +++GG+ E+ I+I +++ A + LK GD++
Sbjct: 16 PRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKI 75
Query: 114 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR---YTPKVL 151
L V+GV ++ H +AVE +K A V +V+ TP+V+
Sbjct: 76 LEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSSTPRVI 116
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 60 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 119
G +++ L K E LG + EQ I ++RI GG ADR G + GD+L VNG+
Sbjct: 1 GSDSVKIIRLVKNREPLGATIKK-DEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGI 59
Query: 120 SVEGEDHGKAVELLKQAQRSVKL 142
VE + + +++L Q+Q ++
Sbjct: 60 PVEDKRPEEIIQILAQSQGAITF 82
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 63 HPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
P ++ + K G+G +++ K + IY+ ++ GG AD G L GDQLLSV+G
Sbjct: 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 119 VSVEGEDHGKAVELLKQAQRSVKL 142
S+ G +A EL+ + V L
Sbjct: 69 RSLVGLSQERAAELMTRTSSVVTL 92
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 72 TDEGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
T++ LGF + G E+ I+ISR++PGG+A G L D++L VNG+ V
Sbjct: 40 TEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVS 99
Query: 123 GEDHGKAVELLKQAQRSVKLVVR 145
G+ + +++ R++ + VR
Sbjct: 100 GKSLDQVTDMMIANSRNLIITVR 122
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 67 VELPK---TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
V+LPK + G+ + ++ P+ IS I G VA R G L+ GD+LL+++ + ++
Sbjct: 111 VKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDS 170
Query: 124 EDHGKAVELLKQAQRSVKLVVR 145
AV++L+Q + VKL +R
Sbjct: 171 CSMEDAVQILQQCEDLVKLKIR 192
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 79 NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138
+V + +SP IS I A+R G L+ GD+++++NG+ E +A +LL+ +
Sbjct: 27 SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI 86
Query: 139 SVKLVVRYTPKVLEEM 154
+ K+ + V E +
Sbjct: 87 TSKVTLEIEFDVAESV 102
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 64 PRVVELPKT-DEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
P +VE+ KT LG ++ +N S I I RI P V DR G L GD +LS++G S+
Sbjct: 16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75
Query: 122 EGEDHGKAVELLKQAQRSVKLVVRYTPK 149
E +A +LL V+L + P+
Sbjct: 76 EHCSLLEATKLLASISEKVRLEILPVPQ 103
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR+ L K +G GFN+ K + YI + PG A R GL+ D+L+ VNG +VEG
Sbjct: 5 PRLCHLRKGPQGYGFNLHSDKSRPGQ-YIRSVDPGSPAAR-SGLRAQDRLIEVNGQNVEG 62
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
H + V +K + +L+V
Sbjct: 63 LRHAEVVASIKAREDEARLLV 83
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR+ L K G GF++ G K + YI + PG A++ GL GD+L+ VNG +VE
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
E H + V ++ A +V+L+V
Sbjct: 62 ETHQQVVSRIRAALNAVRLLV 82
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 65 RVVELPKTDEGLGFNVMGGKEQNSP--IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
RV+ + K + GLG ++GG +N +YI +IPGG + G LK GDQL+S+N S+
Sbjct: 17 RVITVTK-ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMI 75
Query: 123 GEDHGKAVELLKQAQ 137
G +A ++ +A+
Sbjct: 76 GVSFEEAKSIITRAK 90
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query: 76 LGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 127
LGF++ GG + + I+++R+ P G A + L+ GD+++ NG S +HG
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINIEHG 61
Query: 128 KAVELLKQAQRSVKLVV 144
+AV LLK Q +V+L++
Sbjct: 62 QAVSLLKTFQNTVELII 78
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR+ L K G GF++ G K + YI + PG A++ GL GD+L+ VNG +VE
Sbjct: 3 PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 60
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
E H + V ++ A +V+L+V
Sbjct: 61 ETHQQVVSRIRAALNAVRLLV 81
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR+ L K G GF++ G K + YI + PG A++ GL GD+L+ VNG +VE
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
E H + V ++ A +V+L+V
Sbjct: 62 ETHQQVVSRIRAALNAVRLLV 82
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query: 76 LGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 127
LGF++ GG + + I+++R+ P G A + L+ GD+++ NG S +HG
Sbjct: 5 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINIEHG 62
Query: 128 KAVELLKQAQRSVKLVV 144
+AV LLK Q +V+L++
Sbjct: 63 QAVSLLKTFQNTVELII 79
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR+ L K G GF++ G K + YI + PG A++ GL GD+L+ VNG +VE
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
E H + V ++ A +V+L+V
Sbjct: 62 ETHQQVVSRIRAALNAVRLLV 82
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 73 DEGLGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
D LGF++ GG + + I+++R+ P G A + L+ GD+++ NG S
Sbjct: 12 DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINI 69
Query: 125 DHGKAVELLKQAQRSVKLVV 144
+HG+AV LLK Q +V+L++
Sbjct: 70 EHGQAVSLLKTFQNTVELII 89
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 70 PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRH-GGLKRGDQLLSVNGVSVEGEDHGK 128
P + GFNV GG +Q P+ +SR+ PG AD L GDQ++ +NG + H +
Sbjct: 12 PDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQ 71
Query: 129 AVELLKQA--QRSVKLVVRYTPKVLE 152
V +K + + S +L++ P +E
Sbjct: 72 VVLFIKASCERHSGELMLLVRPNAVE 97
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 73 DEGLGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
D LGF++ GG + + I+++R+ P G A + L+ GD+++ NG S
Sbjct: 20 DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINI 77
Query: 125 DHGKAVELLKQAQRSVKLVV 144
+HG+AV LLK Q +V+L++
Sbjct: 78 EHGQAVSLLKTFQNTVELII 97
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
GF + GGK+ N P+ ISRI PG A + L +GD +++++GV+ + H +A +K
Sbjct: 13 WGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 71
Query: 136 AQRSVKLVVR 145
A ++ L ++
Sbjct: 72 ASYNLSLTLQ 81
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
GF + GGK+ N P+ ISRI PG A + L +GD +++++GV+ + H +A +K
Sbjct: 20 WGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 78
Query: 136 AQRSVKLVVR 145
A ++ L ++
Sbjct: 79 ASYNLSLTLQ 88
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR +L K EG + E+++ ++ R+I G GL GD++L +NGV V+
Sbjct: 3 PRESKLSKQ-EGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 61
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
E+H + VEL++++ SV L+V
Sbjct: 62 EEHAQVVELVRKSGNSVTLLV 82
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 67 VELPKTDEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
VEL + G G + GG++ ++P+ + ++ G A R G L+ GD +L +NG S +G
Sbjct: 15 VELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74
Query: 125 DHGKAVELLKQAQRSVKLVVR 145
H +AVE ++ + LV+R
Sbjct: 75 THAQAVERIRAGGPQLHLVIR 95
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR +L K EG + E+++ ++ R+I G GL GD++L +NGV V+
Sbjct: 2 PRESKLSKQ-EGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 60
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
E+H + VEL++++ SV L+V
Sbjct: 61 EEHAQVVELVRKSGNSVTLLV 81
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
RVV + K G GF + G EQ I I I PG A+ G LK D +++VNG SVE
Sbjct: 8 RVVVIKKGSNGYGFYLRAGPEQKGQI-IKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEAL 65
Query: 125 DHGKAVELLKQAQRSVKLVV 144
DH VE++++ L+V
Sbjct: 66 DHDGVVEMIRKGGDQTTLLV 85
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 76 LGFNVMGGK--------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 127
LGFN++GG+ + I++S+I+ G A + GGL+ D+++ VNG + H
Sbjct: 21 LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHD 80
Query: 128 KAVELLKQAQRSVKL-VVRYT 147
+AVE K A+ + + V+R T
Sbjct: 81 QAVEAFKTAKEPIVVQVLRRT 101
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
GF + GG E P+ +S+I GG A ++ GD+L+++NG + G +A+ L+K
Sbjct: 23 WGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQ-EALILIKG 81
Query: 136 AQRSVKLVVR 145
+ R +KL+VR
Sbjct: 82 SFRILKLIVR 91
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 70 PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRH-GGLKRGDQLLSVNGVSVEGEDHGK 128
P + GFNV GG +Q P+ +SR+ PG AD L GDQ++ +NG + H +
Sbjct: 23 PDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQ 82
Query: 129 AVELLKQA 136
V +K +
Sbjct: 83 VVLFIKAS 90
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 60 GHAHPRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQL 113
GH VEL K ++GLG +++G G + + I++ + GG A R G ++ DQ+
Sbjct: 1 GHMELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQI 60
Query: 114 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144
+ V+G+S+ G A +L+ + +V+ V+
Sbjct: 61 VEVDGISLVGVTQNFAATVLRNTKGNVRFVI 91
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 67 VELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 120
VEL K ++GLG +++G G + + I++ + GG A R G ++ DQ++ V+G+S
Sbjct: 84 VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 143
Query: 121 VEGEDHGKAVELLKQAQRSVKLVV 144
+ G A +L+ + +V+ V+
Sbjct: 144 LVGVTQNFAATVLRNTKGNVRFVI 167
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 75 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 134
GLG ++ G Q I+IS + PG ++ G L+ GDQ++ VNGV DH +AV +LK
Sbjct: 14 GLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLK 72
Query: 135 QAQ 137
++
Sbjct: 73 SSR 75
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
LG + GG E IYI+ + PG A+ G LK GDQ+L VNG S H +AV LLK
Sbjct: 34 LGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKS 92
Query: 136 AQRSVKLV 143
++ + V
Sbjct: 93 SRHLILTV 100
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 75 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 134
GLG ++ G Q I+IS + PG ++ G L+ GDQ++ VNGV DH +AV +LK
Sbjct: 28 GLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
Query: 135 QAQRSVKLVV 144
+ RS+ + +
Sbjct: 87 -SSRSLTISI 95
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 72 TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
+D+ LGF + G E+ I+ISR++PGG+A+ G L D+++ VNG+ V
Sbjct: 41 SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 100
Query: 123 GEDHGKAVELLKQAQRSVKLVVRYTP 148
G+ + +++ S L++ P
Sbjct: 101 GKTLDQVTDMM--VANSSNLIITVKP 124
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 68 ELPKTDEG---LGFNVMGGKEQNS----PIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 120
E+P D G LG +V G + + + I++ II GG A + G L+ DQL++VNG S
Sbjct: 12 EVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGES 71
Query: 121 VEGEDHGKAVELLKQA 136
+ G+ + +A+E L+++
Sbjct: 72 LLGKANQEAMETLRRS 87
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 72 TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
+D+ LGF + G E+ I+ISR++PGG+A+ G L D+++ VNG+ V
Sbjct: 41 SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 100
Query: 123 GEDHGKAVELLKQAQRSVKLVVRYTP 148
G+ + +++ S L++ P
Sbjct: 101 GKTLDQVTDMM--VANSSNLIITVKP 124
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 68 ELPKTDEG---LGFNVMGGKEQNS----PIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 120
E+P D G LG +V G + + + I++ II GG A + G L+ DQL++VNG S
Sbjct: 9 EVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGES 68
Query: 121 VEGEDHGKAVELLKQA 136
+ G+ + +A+E L+++
Sbjct: 69 LLGKANQEAMETLRRS 84
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR+ + K G GFN+ K + +I + P A+ GL+ D+++ VNGV +EG
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPG-QFIRSVDPDSPAE-ASGLRAQDRIVEVNGVCMEG 67
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
+ HG V ++ KL+V
Sbjct: 68 KQHGDVVSAIRAGGDETKLLV 88
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 71 KTDEG--LGFNVMGGKEQNSPIYISRIIPGGVADRH-GGLKRGDQLLSVNGVSVEGEDHG 127
K DE GFNV GG +Q P+ +SR+ PG AD L GDQ++ +NG + H
Sbjct: 24 KPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD 83
Query: 128 KAVELLKQA 136
+ V +K +
Sbjct: 84 QVVLFIKAS 92
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 66 VVELPKTDEGLGFNVMGGKEQN--SP-IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
VEL + GLG ++ G + +P +YI ++PG A G L GD++L VNG S+
Sbjct: 11 TVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLL 70
Query: 123 GEDHGKAVELLKQAQRSVKLVV 144
G + +AV+L++ + ++ +V
Sbjct: 71 GLGYLRAVDLIRHGGKKMRFLV 92
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 66 VVELPKTDEG---LGFNVMGGKEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNG 118
+E+P D G LG ++ G K + + I+I II GG A + G L+ DQL++VNG
Sbjct: 26 TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNG 85
Query: 119 VSVEGEDHGKAVELLKQA 136
++ G+ + +A+E L+++
Sbjct: 86 ETLLGKSNHEAMETLRRS 103
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 84 KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 143
+ + + ISRI+ GG A++ G L GD++L +NG+ + G+D + +LL ++ V
Sbjct: 44 RNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV 103
Query: 144 V 144
+
Sbjct: 104 L 104
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 67 VELPKTDEGLGFNVMG----GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
VEL K +GLG + G K + S I++ I + G ++ GDQ+++V+G +++
Sbjct: 8 VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
Query: 123 GEDHGKAVELLKQAQRSVKLVV 144
G + +AVE+L+ ++V L +
Sbjct: 68 GFTNQQAVEVLRHTGQTVLLTL 89
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 68 ELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 127
+L K+ G GF V+GG E + + I ++ G A G ++ GD ++SVN V G H
Sbjct: 5 KLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHA 64
Query: 128 KAVELLKQ 135
+ V++ +
Sbjct: 65 QVVKIFQS 72
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 72 TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
+D+ LGF + G E+ I+ISR++PGG+A+ G L D+++ VNG+ V
Sbjct: 13 SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 72
Query: 123 GEDHGKAVELLKQAQRSVKLVVRYTP 148
G+ + +++ S L++ P
Sbjct: 73 GKTLDQVTDMM--VANSSNLIITVKP 96
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR+ + K G GFN+ K + +I + P A+ GL+ D+++ VNGV +EG
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPGQ-FIRSVDPDSPAE-ASGLRAQDRIVEVNGVCMEG 67
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
+ HG V ++ KL+V
Sbjct: 68 KQHGDVVSAIRAGGDETKLLV 88
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR+ + K G GFN+ K + +I + P A+ G L+ D+++ VNGV +EG
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPGQ-FIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEG 67
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
+ HG V ++ KL+V
Sbjct: 68 KQHGDVVSAIRAGGDETKLLV 88
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 67 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 126
+L K+ G GF V+GG E + + I ++ G A G ++ GD ++SVN V G H
Sbjct: 22 TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 81
Query: 127 GKAVELLKQ 135
+ V++ +
Sbjct: 82 AQVVKIFQS 90
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 72 TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
+D+ LGF + G E+ I+ISR++PGG+A+ G L D+++ VNG+ V
Sbjct: 15 SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 74
Query: 123 GEDHGKAVELLKQAQRSVKLVVRYTP 148
G+ + +++ S L++ P
Sbjct: 75 GKTLDQVTDMM--VANSSNLIITVKP 98
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR+ + K G GFN+ K + +I + P A+ GL+ D+++ VNGV +EG
Sbjct: 5 PRLCTMKKGPSGYGFNLHSDKSKPGQ-FIRSVDPDSPAE-ASGLRAQDRIVEVNGVCMEG 62
Query: 124 EDHGKAVELLKQAQRSVKLVV 144
+ HG V ++ KL+V
Sbjct: 63 KQHGDVVSAIRAGGDETKLLV 83
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 74 EGLGFNVMGGKEQNSP---------IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
E LG ++ GG ++ I+IS++ P G A R G L+ G +LL VN S+ G
Sbjct: 21 ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGL 80
Query: 125 DHGKAVELLKQAQRSVKLVV 144
HG+AV+LL+ ++ ++V
Sbjct: 81 THGEAVQLLRSVGDTLTVLV 100
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 72 TDEGLGFNVMGGKE---QNSPI--YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 126
+ GLG ++GGKE + I YI++I+PGG A++ G L G Q+L NG+ + + +
Sbjct: 28 SGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTY 87
Query: 127 GKAVELLKQAQRSVKLVVR 145
+ ++ Q ++ VR
Sbjct: 88 EEVQSIISQQSGEAEICVR 106
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 67 VELPKTD-EGLGFNVMG--GKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 120
VEL + D + LG ++G G S IY+ +IPG A +G ++ D++++V+GV+
Sbjct: 19 VELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVN 78
Query: 121 VEGEDHGKAVELLKQAQRSVKLVV 144
++G + VE+L+ A + V L +
Sbjct: 79 IQGFANHDVVEVLRNAGQVVHLTL 102
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
GF + GG++ ++PI ++++ G A + L+ GD ++++NG S EG H +A ++Q
Sbjct: 13 WGFRITGGRDFHTPIMVTKVAERGKA-KDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 71
Query: 136 AQRSVKL 142
+ ++L
Sbjct: 72 SPSPLRL 78
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
GF + GGK+ N P+ IS + GG A + ++ GD +LS++G+S +G H +A +K
Sbjct: 17 WGFRLQGGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKA 75
Query: 136 AQRSVKLVVR 145
S+ + ++
Sbjct: 76 CTGSLNMTLQ 85
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
GF + GG++ ++PI ++++ G A + L+ GD ++++NG S EG H +A ++Q
Sbjct: 14 WGFRITGGRDFHTPIMVTKVAERGKA-KDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 72
Query: 136 AQRSVKL 142
+ ++L
Sbjct: 73 SPSPLRL 79
>pdb|1ZL8|A Chain A, Nmr Structure Of L27 Heterodimer From C. Elegans Lin-7
And H. Sapiens Lin-2 Scaffold Proteins
Length = 53
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 1 GEVPVTKLSALQKVLQSDFFNCVRDVYEHV 30
GEV KL++LQ+VLQS+FF VR+VYE V
Sbjct: 23 GEVNNAKLASLQQVLQSEFFGAVREVYETV 52
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 67 VELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 120
VEL K ++GLG +++G G + + I++ + GG A R G ++ DQ++ V+G+S
Sbjct: 13 VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 72
Query: 121 VEGEDHGKAVELLKQAQRSVKLVV 144
+ G A +L+ + +V+ V+
Sbjct: 73 LVGVTQNFAATVLRNTKGNVRFVI 96
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 66 VVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
V L K GLGF++ GGK + P+ I+RI G +++ ++ GD++L + G +++
Sbjct: 32 TVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQ 91
Query: 123 GEDHGKAVELLK 134
G +A ++K
Sbjct: 92 GLTRFEAWNIIK 103
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 66 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 125
++ P E LGF V G I ++ GG+A+R GG++ G +++ +NG SV
Sbjct: 12 IIHRPHAREQLGFCVEDG-------IICSLLRGGIAER-GGIRVGHRIIEINGQSVVATP 63
Query: 126 HGKAVELLKQAQRSVKL 142
H + +ELL +A V +
Sbjct: 64 HARIIELLTEAYGEVHI 80
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 66 VVELPKT-DEGLGFNVMGGKEQNSP------IYISRIIPGGVADRHGGLKRGDQLLSVNG 118
+V L KT + G ++ G+ ++SP I+I I+P A G LK GD++LS+NG
Sbjct: 8 MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 119 VSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 149
V ++L+K+A ++L ++ K
Sbjct: 68 KDVRNSTEQAVIDLIKEADFKIELEIQTFDK 98
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
GF + GGK+ N P+ ISR+ PGG A G+ GD +LS++G
Sbjct: 15 WGFRLQGGKDFNVPLSISRLTPGGKA-AQAGVAVGDWVLSIDG 56
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 60 GHAHPRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQL 113
GH VEL K EGLG +++G G + + I++ + GG A R G ++ D L
Sbjct: 1 GHMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 114 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144
+ V+G S+ G A +L+ + V+ ++
Sbjct: 61 VEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 91
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 75 GLGFNVMGG----KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAV 130
G G + GG + +SP + I P A+R G L+ GD++LS+NG++ E +A
Sbjct: 28 GFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEAN 87
Query: 131 ELLKQAQRSVKLVVR 145
+LL+ A + K+V+
Sbjct: 88 QLLRDAALAHKVVLE 102
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
GF + GG + N P+ I+RI PG A L GD +L+++G E H A + +K
Sbjct: 17 WGFRLSGGIDFNQPLVITRITPGSKA-AAANLCPGDVILAIDGFGTESMTHADAQDRIKA 75
Query: 136 AQRSVKLVV 144
A + L +
Sbjct: 76 ASYQLCLKI 84
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 63 HPRVVELPKT-DEGLGFNVMGGKEQNS---------PIYISRIIPGGVADRHGGLKRGDQ 112
PR VEL + + LG +++GG+ S I+I ++ A ++G LK GD+
Sbjct: 4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 63
Query: 113 LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 145
++ V+G+ + H +AVE +++A V +V+
Sbjct: 64 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 96
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
GF + GGK+ N P+ IS + GG A ++ GD +LS++G++ +G H +A +K
Sbjct: 15 WGFRLQGGKDFNMPLTISSLKDGGKA-AQANVRIGDVVLSIDGINAQGMTHLEAQNKIKG 73
Query: 136 AQRSVKLVVR 145
S+ + ++
Sbjct: 74 CTGSLNMTLQ 83
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 63 HPRVVELPKT-DEGLGFNVMGGKEQNS---------PIYISRIIPGGVADRHGGLKRGDQ 112
PR VEL + + LG +++GG+ S I+I ++ A ++G LK GD+
Sbjct: 24 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 83
Query: 113 LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 145
++ V+G+ + H +AVE +++A V +V+
Sbjct: 84 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 116
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
R V + K D G G V G ++P+++ + G A R G++ GD+++ VNG V
Sbjct: 9 RCVIIQKDDNGFGLTVSG----DNPVFVQSVKEDGAAMR-AGVQTGDRIIKVNGTLVTHS 63
Query: 125 DHGKAVELLKQAQRSVKLVVRYTP 148
+H + V+L+K V L V+ P
Sbjct: 64 NHLEVVKLIKSGSY-VALTVQGRP 86
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 67 VELPKTDEGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 119
VEL K EGLG +++G G E+ I++ + GG A R G ++ D L+ V+G
Sbjct: 84 VELEKDSEGLGISIIGMGAGADMGLEKLG-IFVKTVTEGGAAHRDGRIQVNDLLVEVDGT 142
Query: 120 SVEGEDHGKAVELLKQAQRSVKLVV 144
S+ G A +L+ + V+ ++
Sbjct: 143 SLVGVTQSFAASVLRNTKGRVRFMI 167
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 67 VELPKTDEGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 119
VEL K EGLG +++G G E+ I++ + GG A R G ++ D L+ V+G
Sbjct: 84 VELEKDSEGLGISIIGMGAGADMGLEKLG-IFVKTVTEGGAAHRDGRIQVNDLLVEVDGT 142
Query: 120 SVEGEDHGKAVELLKQAQRSVKLVV 144
S+ G A +L+ + V+ ++
Sbjct: 143 SLVGVTQSFAASVLRNTKGRVRFMI 167
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 64 PRV--VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
PRV VE+ + G GF + G +P +S ++ G AD GL+ GDQ+L+VN ++V
Sbjct: 1 PRVRSVEVARGRAGYGFTLSG----QAPCVLSCVMRGSPAD-FVGLRAGDQILAVNEINV 55
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
+ H V+L+ + + +V+
Sbjct: 56 KKASHEDVVKLIGKCSGVLHMVI 78
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
R V + K G GF V G + + + + PGG A + G+K GD+++ VNG V
Sbjct: 10 RCVIIQKDQHGFGFTVSG----DRIVLVQSVRPGGAAMK-AGVKEGDRIIKVNGTMVTNS 64
Query: 125 DHGKAVELLKQA 136
H + V+L+K
Sbjct: 65 SHLEVVKLIKSG 76
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 29/109 (26%)
Query: 64 PRVVELPKTDEGLGFNVM-----------------------GGKEQN-----SPIYISRI 95
P+ V L +T +G GF + GGK++N I++ ++
Sbjct: 9 PKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQV 68
Query: 96 IPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144
GG A GL GD+++ VNG SV G+ + + + L++ + +++L V
Sbjct: 69 KEGGPA-FEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS----VKLVVR 145
+ +S + GG A+RHGG+ +GD+++++NG V +A L++A + LVV
Sbjct: 45 VVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVA 104
Query: 146 YTPKVLEEMEMRF 158
P + E+ F
Sbjct: 105 VCPPKEYDDELTF 117
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 75 GLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 132
GLGF V KE+ S P+ IS +I GG A++ G ++ GD +L+VN + + A+E+
Sbjct: 21 GLGFLV---KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 77
Query: 133 LK--QAQRSVKLVVRYTPKVLEEMEMRFD---KQRTARRRQP 169
L+ ++ V L++R +E F +T R QP
Sbjct: 78 LRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 119
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 64 PRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
R+V+ K TDE +G + E N I ++RI+ GG+ R G L GD++ +NG+SV
Sbjct: 2 SRLVQFQKNTDEPMGIT-LKMNELNHCI-VARIMHGGMIHRQGTLHVGDEIREINGISVA 59
Query: 123 GEDHGKAVELLKQAQRSVKL 142
+ + ++L++ + S+
Sbjct: 60 NQTVEQLQKMLREMRGSITF 79
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 75 GLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 132
GLGF V KE+ S P+ IS +I GG A++ G ++ GD +L+VN + + A+E+
Sbjct: 16 GLGFLV---KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 72
Query: 133 LK--QAQRSVKLVVRYTPKVLEEMEMRFD---KQRTARRRQP 169
L+ ++ V L++R +E F +T R QP
Sbjct: 73 LRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 114
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 75 GLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 132
GLGF V KE+ S P+ IS +I GG A++ G ++ GD +L+VN + + A+E+
Sbjct: 14 GLGFLV---KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 70
Query: 133 LK--QAQRSVKLVVRYTPKVLEEMEMRFD---KQRTARRRQP 169
L+ ++ V L++R +E F +T R QP
Sbjct: 71 LRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 112
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 66 VVELPKTDEGLGFNVMGGKEQNSPI-YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 124
+V + K+ LG + GG P+ I I GG A G LK G +L VNG+++ G+
Sbjct: 9 LVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGK 68
Query: 125 DHGKAVELLKQAQRS 139
+H +A ++ +A ++
Sbjct: 69 EHREAARIIAEAFKT 83
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 65 RVVELPKTD-EGLGFNVMGGKEQNSPI-------------YISRIIPGGVADRHGGLKRG 110
+ V L K D EG GF + G K Q +PI Y+ + GGVA R GL+ G
Sbjct: 9 KTVLLQKKDSEGFGFVLRGAKAQ-TPIEEFTPTPAFPALQYLESVDEGGVAWR-AGLRMG 66
Query: 111 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144
D L+ VNG +V H + V +++Q ++ + V
Sbjct: 67 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 71 KTDEGLGFNVMGGKEQNSP-----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 125
K LG ++ G ++Q++ IY+ +IPG A G ++ D++L V+ V+V+G
Sbjct: 22 KDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMA 81
Query: 126 HGKAVELLKQA 136
VE+L+ A
Sbjct: 82 QSDVVEVLRNA 92
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 85 EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144
E + IYIS I P +A + G ++ GD+++ +NG+ V+ + A+ L + ++ L++
Sbjct: 45 EDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVAL-LTSEENKNFSLLI 103
Query: 145 RYTPKVLEEMEMRFDK 160
L+E M D
Sbjct: 104 ARPELQLDEGWMDDDS 119
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 65 RVVELPKTD-EGLGFNVMGGKEQNSPI-------------YISRIIPGGVADRHGGLKRG 110
+ V L K D EG GF + G K Q +PI Y+ + GGVA R GL+ G
Sbjct: 9 KTVLLQKKDSEGFGFVLRGAKAQ-TPIEEFTPTPAFPALQYLESVDEGGVAWR-AGLRMG 66
Query: 111 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144
D L+ VNG +V H + V +++Q ++ + V
Sbjct: 67 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 65 RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
R+++ K T+E +G + ++Q+ + +RI+ GG+ R G L GD++L +NG +V
Sbjct: 14 RLIQFEKVTEEPMGITLKLNEKQSCTV--ARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 124 EDHGKAVELLKQAQRSVK 141
+V+ L++A + K
Sbjct: 72 H----SVDQLQKAMKETK 85
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 71 KTDEGLGFNVMGGKEQNSPI-------------YISRIIPGGVADRHGGLKRGDQLLSVN 117
K EG GF + G K Q +PI Y+ + GGVA R GL+ GD L+ VN
Sbjct: 36 KDSEGFGFVLRGAKAQ-TPIEEFTPTPAFPALQYLESVDEGGVAWR-AGLRMGDFLIEVN 93
Query: 118 GVSVEGEDHGKAVELLKQAQRSVKLVV 144
G +V H + V +++Q ++ + V
Sbjct: 94 GQNVVKVGHRQVVNMIRQGGNTLMVKV 120
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 65 RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
R+++ K T+E +G + ++Q+ + +RI+ GG+ R G L GD++L +NG +V
Sbjct: 14 RLIQFEKVTEEPMGICLKLNEKQSCTV--ARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 124 EDHGKAVELLKQAQRSVK 141
+V+ L++A + K
Sbjct: 72 H----SVDQLQKAMKETK 85
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds
To Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
E GF+V G + +Y+ I P G D GGLK D+LL VN V D V L+
Sbjct: 19 EDFGFSVADGLLEKG-VYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRTRDFDCCLVVPLI 76
Query: 134 KQAQRSVKLVVRYTP 148
++ + LV+ P
Sbjct: 77 AESGNKLDLVISRNP 91
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
GF + GG++ ++PI ++++ G A+ L+ GD ++++NG S E H +A ++Q
Sbjct: 18 WGFRISGGRDFHTPIIVTKVTERGKAE-AADLRPGDIIVAINGQSAENMLHAEAQSKIRQ 76
Query: 136 AQRSVKL 142
+ ++L
Sbjct: 77 SASPLRL 83
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK--QAQRSVKLVVRYT 147
+ ++ ++ GG A R G L GDQ++S+NG S+ G ++K + Q VKL +
Sbjct: 218 VILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSC 277
Query: 148 PKVLE 152
P V E
Sbjct: 278 PPVTE 282
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 67 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 110
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 16 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 74
Query: 111 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 144
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 75 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 67 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 110
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 16 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 74
Query: 111 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 144
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 75 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 67 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 110
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 17 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 75
Query: 111 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 144
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 76 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 110
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 67 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 110
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 27 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 85
Query: 111 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 144
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 86 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 120
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 67 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 110
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 8 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 66
Query: 111 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 144
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 67 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 101
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 67 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 110
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 6 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 64
Query: 111 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 144
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 65 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 99
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
LGF+V G I ++ GG+A+R GG++ G +++ +NG SV H K V +L
Sbjct: 26 LGFSVQNG-------IICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILSN 77
Query: 136 A 136
A
Sbjct: 78 A 78
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 67 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 110
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 16 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 74
Query: 111 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 144
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 75 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
LGF+V G I ++ GG+A+R GG++ G +++ +NG SV H K V +L
Sbjct: 17 LGFSVQNG-------IICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILSN 68
Query: 136 A 136
A
Sbjct: 69 A 69
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 79 NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138
+V + +SP IS I A+R G L+ GD+++++NG+ E +A +LL+ +
Sbjct: 27 SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI 86
Query: 139 SVKLVVRYTPKVLEEMEMRFD 159
+ K+ +E+ FD
Sbjct: 87 TSKVT----------LEIEFD 97
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 79 NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138
+V + +SP IS I A+R G L+ GD+++++NG+ E +A +LL+ +
Sbjct: 36 SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI 95
Query: 139 SVKLVVRYTPKVLEEMEMRFD 159
+ K+ +E+ FD
Sbjct: 96 TSKVT----------LEIEFD 106
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
GF ++GGK+ P+ ISR+ PG A L GD + +++G + H +A +K
Sbjct: 15 WGFRLVGGKDFEQPLAISRVTPGSKA-ALANLCIGDVITAIDGENTSNMTHLEAQNRIKG 73
Query: 136 AQRSVKLVV 144
++ L V
Sbjct: 74 CTDNLTLTV 82
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK--QAQRSVKLVVRYT 147
+ I+ ++ GG A++ G L GDQ++S+NG S+ G ++K + Q VKL +
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVRC 90
Query: 148 PKVLEEMEMRFD 159
P V + R D
Sbjct: 91 PPVTTVLIRRPD 102
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
LGF+V G I ++ GG+A+R GG++ G +++ +NG SV H K V +L
Sbjct: 107 LGFSVQNG-------IICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILSN 158
Query: 136 A 136
A
Sbjct: 159 A 159
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 60 GHAHPRVVELPKTDEGLGF--NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVN 117
G + P++ L K + G GF N + G + +I + GG AD G L+ D ++ VN
Sbjct: 4 GSSGPKLCRLAKGENGYGFHLNAIRGLPGS---FIKEVQKGGPADLAG-LEDEDVIIEVN 59
Query: 118 GVSVEGEDHGKAVELLKQAQRSVKLVV 144
GV+V E + K V+ ++ + ++V L+V
Sbjct: 60 GVNVLDEPYEKVVDRIQSSGKNVTLLV 86
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 77 GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136
GF++ ++ P+ + + GG A HG L GDQ+L +N E +AV++L++A
Sbjct: 24 GFHI----SESLPLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREA 77
Query: 137 QRSVKL-VVRYT 147
+ S+ + VVR T
Sbjct: 78 EDSLSITVVRCT 89
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 74 EGLGFNVM--GGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVE 131
EGLG ++ G I+ ++ GG A+R G L GD+L ++NG S+ G
Sbjct: 21 EGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQA 80
Query: 132 LLKQ--AQRSVKLVVRYTPKV 150
+++ +Q SV L + + P V
Sbjct: 81 AVRETKSQTSVTLSIVHCPPV 101
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 77 GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136
GF ++GG++ ++P+ ISR+ G A L GD + ++NG S E H +A +K
Sbjct: 15 GFRLVGGRDFSAPLTISRVHAGSKAAL-AALCPGDLIQAINGESTELMTHLEAQNRIKGC 73
Query: 137 QRSVKLVV 144
+ L V
Sbjct: 74 HDHLTLSV 81
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 64 PRVVELPKTDEGLGFNVM--GGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
PR + L K +G GF + G + ++ + PG + + G++ GD+L++V G SV
Sbjct: 4 PRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPG-LPAKKAGMQAGDRLVAVAGESV 62
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
EG H + V ++ V L V
Sbjct: 63 EGLGHEETVSRIQGQGSCVSLTV 85
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 76 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
LG +++G + IYI I+ GG G ++ GD LL VN V+ E + AV +L
Sbjct: 12 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 71
Query: 134 KQ 135
++
Sbjct: 72 RE 73
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135
GF ++GG++ ++P+ ISR+ G A L GD + ++NG S E H +A +K
Sbjct: 20 WGFRLVGGRDFSAPLTISRVHAGSKAAL-AALCPGDLIQAINGESTELMTHLEAQNRIKG 78
Query: 136 AQRSVKLVVRYTPK 149
+ L V P
Sbjct: 79 CHDHLTLSVSSGPS 92
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 64 PRVVELPKTDEGLGF--NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
P++ L K + G GF N + G + +I + GG AD GL+ D ++ VNGV+V
Sbjct: 4 PKLCRLAKGENGYGFHLNAIRGLPGS---FIKEVQKGGPADL-AGLEDEDVIIEVNGVNV 59
Query: 122 EGEDHGKAVELLKQAQRSVKLVV 144
E + K V+ ++ + ++V L+V
Sbjct: 60 LDEPYEKVVDRIQSSGKNVTLLV 82
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 62 AHPRVVELPKTDEGLGF--NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 119
+ P++ L K + G GF N + G + +I + GG AD GL+ D ++ VNGV
Sbjct: 2 SKPKLCRLAKGENGYGFHLNAIRGLPGS---FIKEVQKGGPADL-AGLEDEDVIIEVNGV 57
Query: 120 SVEGEDHGKAVELLKQAQRSVKLVV 144
+V E + K V+ ++ + ++V L+V
Sbjct: 58 NVLDEPYEKVVDRIQSSGKNVTLLV 82
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 76 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
LG +++G + IYI I+ GG G ++ GD LL VN V+ E + AV +L
Sbjct: 15 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 74
Query: 134 KQ 135
++
Sbjct: 75 RE 76
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 105 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 150
GL GD + SVNG++VEG H + V+++K + ++L Y+ +
Sbjct: 53 AGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYSSTL 98
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 145
S I++ I +A R G ++ GD +L +NG E A L+++++ +K+VV+
Sbjct: 23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQ 80
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144
S I++ + G+A + G L GD +L +NG E A +L+++++ ++LVV
Sbjct: 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144
S I++ + G+A + G L GD +L +NG E A +L+++++ ++LVV
Sbjct: 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK--QAQRSVKLVVRYT 147
+ I+ ++ GG A++ G L GDQ++S+NG S+ G ++K + Q VKL +
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVSG 94
Query: 148 PK 149
P
Sbjct: 95 PS 96
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 145
S I++ I +A R G ++ GD +L +NG E A L+++++ +K+VV+
Sbjct: 20 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQ 77
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 76 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
LG +++G + + IYI I+ GG G ++ GD LL VN ++ E + AV +L
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 134 K 134
+
Sbjct: 79 R 79
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK--QAQRSVKL-VVR 145
+ I+ ++ GG A++ G L GDQ++S+NG S+ G ++K + Q VKL +VR
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVR 89
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 65 RVVELPKTD-EGLGFNVMGGKEQNSPIYISRI------IPGGVADRHGGLKRGDQLLSVN 117
++V + K D E GF + + QN S + I GL+ GD L ++N
Sbjct: 17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANIN 76
Query: 118 GVSVEGEDHGKAVELLKQA 136
GVS EG + + V+L++ +
Sbjct: 77 GVSTEGFTYKQVVDLIRSS 95
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 76 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
LG +++G + + IYI I GG G ++ GD LL VN ++ E + AV +L
Sbjct: 13 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 72
Query: 134 KQ 135
+
Sbjct: 73 RD 74
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 145
S I++ I +A R G ++ GD +L +NG E A L+++++ +K+VV+
Sbjct: 21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQ 78
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 76 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
LG +++G + + IYI I GG G ++ GD LL VN ++ E + AV +L
Sbjct: 15 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 74
Query: 134 KQ 135
+
Sbjct: 75 RD 76
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 76 LGFNVMGGKEQNS---PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
LG V+GGK S +I+++ G +AD G L+ GD++L NG ++G
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQG 100
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 76 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
LG +++G + + IYI I GG G ++ GD LL VN ++ E + AV +L
Sbjct: 15 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 74
Query: 134 K 134
+
Sbjct: 75 R 75
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 105 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 146
GL GD + SVNG++VEG H + V+++K + ++L Y
Sbjct: 53 AGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 105 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 146
GL GD + SVNG++VEG H + V+++K + ++L Y
Sbjct: 53 AGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 64 PRVVELPKTDEGL-GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
P V L K + L G ++ GG + +YI ++ A G + GD++ VNG S++
Sbjct: 20 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 79
Query: 123 GEDHGKAVELLKQAQRSVKL 142
G+ + +++++ + V +
Sbjct: 80 GKTKVEVAKMIQEVKGEVTI 99
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 60 GHAHPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
G PR V L K +G +G + K ++ I++ +++ GL+ GDQ+L +NG
Sbjct: 1 GAMDPREVILCKDQDGKIGLRL---KSIDNGIFV-QLVQANSPASLVGLRFGDQVLQING 56
Query: 119 VSVEGEDHGKAVELLKQA-QRSVKLVVRYTP 148
+ G KA ++LKQA + + +R P
Sbjct: 57 ENCAGWSSDKAHKVLKQAFGEKITMTIRDRP 87
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 64 PRVVELPKTDEGL-GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
P V L K + L G ++ GG + +YI ++ A G + GD++ VNG S++
Sbjct: 3 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 62
Query: 123 GEDHGKAVELLKQAQRSVKL 142
G+ + +++++ + V +
Sbjct: 63 GKTKVEVAKMIQEVKGEVTI 82
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 64 PRVVELPKTDEGL-GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122
P V L K + L G ++ GG + +YI ++ A G + GD++ VNG S++
Sbjct: 25 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 84
Query: 123 GEDHGKAVELLKQAQRSVKL 142
G+ + +++++ + V +
Sbjct: 85 GKTKVEVAKMIQEVKGEVTI 104
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 76 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
LG +++G + + IYI I+ GG G ++ GD LL VN ++ E + AV +L
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 134 K 134
+
Sbjct: 79 R 79
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 76 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
LG +++G + + IYI I+ GG G ++ GD LL VN ++ E + AV +L
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 134 K 134
+
Sbjct: 79 R 79
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 76 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
LG +++G + + IYI I+ GG G ++ GD LL VN ++ E + AV +L
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 134 KQ 135
+
Sbjct: 79 RD 80
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 60 GHAHPRVVELPKTDEGL-GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 118
G P V L K + L G ++ GG + +YI ++ A G + GD++ VNG
Sbjct: 2 GSGVPGKVTLQKDAQNLIGISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNG 61
Query: 119 VSVEGEDHGKAVELLKQAQRSVKL---VVRYTPKVLEEM 154
S++G+ + +++++ + V + ++ PK LE +
Sbjct: 62 RSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVL 100
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 76 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133
LG +++G + + IYI I+ GG G ++ GD LL VN ++ E + AV +L
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 134 KQ 135
+
Sbjct: 79 RD 80
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk P55
Subfamily Member 2
Length = 91
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 65 RVVELPKTDE---GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
R+V + KT G+ F V GG+ + I+RI+ GG+ + G L GD + VNG V
Sbjct: 8 RMVGIRKTAGEHLGVTFRVEGGE-----LVIARILHGGMVAQQGLLHVGDIIKEVNGQPV 62
Query: 122 EGEDHGKAVELLKQAQRSVKLVVRYTPK 149
G D ELL+ A SV L + P
Sbjct: 63 -GSDPRALQELLRNASGSVILKILSGPS 89
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 106 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136
GL+ GDQ+L +NG + G KA ++LKQA
Sbjct: 44 GLRFGDQVLQINGENCAGWSSDKAHKVLKQA 74
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 149
+Y++ + G+A + G LK GD++L +N + + + + L +Q S+ L+VR P+
Sbjct: 46 LYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFL--SQPSLGLLVRTYPE 102
Query: 150 VLEEME 155
+ E +E
Sbjct: 103 LEEGVE 108
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 76 LGFNVMGGKEQNSP---IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 132
LG V+GGK + +I+++ G +AD G L+ GD++L NG + G + + +
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNI 98
Query: 133 LKQAQ 137
+ +++
Sbjct: 99 ILESK 103
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 105 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142
GLK GD + +NG V G H + +ELL ++ V +
Sbjct: 49 AGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSI 86
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 81 MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140
MG + + ++ + G + GL+ GD + +NG SV G H VELL ++ +
Sbjct: 26 MGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKI 85
Query: 141 KL 142
L
Sbjct: 86 SL 87
>pdb|3GGE|A Chain A, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|B Chain B, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|C Chain C, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
Length = 95
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 69 LPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 126
L TD G+G+ +I RI GGV D + GD + S+NG ++ G H
Sbjct: 20 LTITDNGVGYA-----------FIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRH 66
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 69 LPKTDEG--LGFNVMGGKEQNSP---IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
+PK D G LG V+GGK + +I+++ G +AD G L+ GD++L NG + G
Sbjct: 31 MPK-DSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPG 89
Query: 124 EDH 126
+
Sbjct: 90 ATN 92
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 149
+Y++ + G+A + G LK GD++L +N + + + + L +Q S+ L+VR P+
Sbjct: 37 LYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFL--SQPSLGLLVRTYPE 93
Query: 150 V 150
+
Sbjct: 94 L 94
>pdb|1VAE|A Chain A, Solution Structure Of The Pdz Domain Of Mouse Rhophilin-2
Length = 111
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123
PR + + LGF + G N+P+ + + P A G K GD ++S+ GV +
Sbjct: 16 PRGIHFTVEEGDLGFTLRG----NTPVQVHFLDPHCSASL-AGAKEGDYIVSIQGVDCKW 70
Query: 124 EDHGKAVELLKQ 135
+ ++LLK
Sbjct: 71 LTVSEVMKLLKS 82
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 106 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 148
GL++GD + VNG V G H + VEL+ ++ K+ + TP
Sbjct: 53 GLRQGDLITHVNGEPVHGLVHTEVVELILKSGN--KVAISTTP 93
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of Pdz
Domain And Ligand Resonances
Length = 105
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 91 YISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
YI +IP A+ GGLK D ++S+NG SV
Sbjct: 38 YIIEVIPDTPAE-AGGLKENDVIISINGQSV 67
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 91 YISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
YI +IP A+ GGLK D ++S+NG SV
Sbjct: 257 YIIEVIPDTPAEA-GGLKENDVIISINGQSV 286
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 91 YISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
YI +IP A+ GGLK D ++S+NG SV
Sbjct: 257 YIIEVIPDTPAEA-GGLKENDVIISINGQSV 286
>pdb|3SYV|A Chain A, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|B Chain B, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|C Chain C, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|D Chain D, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|E Chain E, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|F Chain F, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|G Chain G, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|H Chain H, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
Length = 347
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 128 KAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQ 168
+A ++ Q ++++ + RYTP+ +E+ME F+ + A R++
Sbjct: 204 EAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQR 244
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 91 YISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121
YI +IP A+ GGLK D ++S+NG SV
Sbjct: 51 YIIEVIPDTPAE-AGGLKENDVIISINGQSV 80
>pdb|3QE6|A Chain A, Mouse Pacsin 3 F-Bar Domain Structure
pdb|3QE6|B Chain B, Mouse Pacsin 3 F-Bar Domain Structure
Length = 304
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 128 KAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQ 168
+A ++ Q ++++ + RYTP+ +E+ME F+ + A R++
Sbjct: 198 EAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQR 238
>pdb|3M3W|A Chain A, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
pdb|3M3W|B Chain B, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
Length = 320
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 128 KAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARR 166
+A ++ Q ++++ + RYTP+ +E+ME F+ + A R
Sbjct: 198 EAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAER 236
>pdb|3OUL|A Chain A, Crystal Structure Of Toxoflavin-Degrading Enzyme In A
Substrate-Free Form
pdb|3OUM|A Chain A, Crystal Structure Of Toxoflavin-Degrading Enzyme In
Complex With Toxoflavin
Length = 232
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 110 GDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142
DQLLS+ +++ D +A LKQA+ VKL
Sbjct: 130 ADQLLSIGEINITTSDVEQAATRLKQAELPVKL 162
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 67 VELPKTDEGLGFNVMGGKEQNSP-IYISRIIPGGVADRHGGLKRGDQLLSVNG 118
V L K D G + + + P ++I ++ GG+A + G L D++L++NG
Sbjct: 7 VALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAING 59
>pdb|3PKV|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla)
pdb|3PKW|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
Mn(Ii)
pdb|3PKX|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
Mn(Ii) And Toxoflavin
Length = 252
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 110 GDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142
DQLLS+ +++ D +A LKQA+ VKL
Sbjct: 153 ADQLLSIGEINITTSDVEQAATRLKQAELPVKL 185
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 81 MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140
MG + S +I + G + GL GD + VNG V G H + VEL+ ++
Sbjct: 29 MGDTDVYSVHHIVWHVEEGGPAQEAGLCAGDLITHVNGEPVHGMVHPEVVELILKSGN-- 86
Query: 141 KLVVRYTP 148
K+ V TP
Sbjct: 87 KVAVTTTP 94
>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
pdb|3S51|A Chain A, Structure Of Fanci
pdb|3S51|B Chain B, Structure Of Fanci
pdb|3S51|C Chain C, Structure Of Fanci
pdb|3S51|D Chain D, Structure Of Fanci
Length = 1308
Score = 26.9 bits (58), Expect = 5.4, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 147
SP+ + R + D HG L DQ V +E DH V L A LV+
Sbjct: 1037 SPVTLLRDLS---QDIHGQLGDIDQ-----DVEIEKTDHFAVVNLRTAAPTVCLLVLSQA 1088
Query: 148 PKVLEEME 155
KVLEE++
Sbjct: 1089 EKVLEEVD 1096
>pdb|3O5N|A Chain A, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|B Chain B, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|C Chain C, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|D Chain D, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|E Chain E, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|F Chain F, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|G Chain G, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|H Chain H, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
Length = 112
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 65 RVVELPKTD-EGLGFNVMGGK-----EQNSPI-------YISRIIPGGVADRHGGLKRGD 111
+V L K D EG GF + G K E+ +P Y+ + GVA R GL+ GD
Sbjct: 12 KVAILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWR-AGLRTGD 70
Query: 112 QLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK 149
L+ VNGV+V H + V L++Q R V VV T K
Sbjct: 71 FLIEVNGVNVVKVGHKQVVGLIRQGGNRLVMKVVSVTRK 109
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 128 KAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 172
KA++L+ +A V+L TP L+E+E + D+ R + SQ
Sbjct: 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQ 417
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 128 KAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 172
KA++L+ +A V+L TP L+E+E + D+ R + SQ
Sbjct: 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQ 417
>pdb|2RHE|A Chain A, Structure Of A Novel Bence-Jones Protein (Rhe) Fragment At
1.6 Angstroms Resolution
Length = 114
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 90 IYISRIIPGGVADRHGGLKRGDQL-LSVNGVSVEGE 124
IY + ++P GV+DR K G L+++G+ E E
Sbjct: 49 IYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDE 84
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 97 PGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 148
PGG A++ G + GD +++V+G +V+G +LL+ S VV + P
Sbjct: 108 PGGPAEKAGA-RAGDVIVTVDGTAVKGXSLYDVSDLLQGEADSQVEVVLHAP 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,684,929
Number of Sequences: 62578
Number of extensions: 170481
Number of successful extensions: 788
Number of sequences better than 100.0: 279
Number of HSP's better than 100.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 289
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)