Query psy12578
Match_columns 172
No_of_seqs 210 out of 1766
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 22:54:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3550|consensus 100.0 4.6E-36 9.9E-41 208.6 14.6 170 1-170 28-197 (207)
2 PF00595 PDZ: PDZ domain (Also 99.7 7E-16 1.5E-20 99.4 10.1 79 66-145 1-81 (81)
3 KOG3209|consensus 99.5 6E-14 1.3E-18 118.3 9.3 86 62-147 897-982 (984)
4 KOG3549|consensus 99.5 5.6E-14 1.2E-18 110.3 7.4 90 58-147 49-139 (505)
5 cd00992 PDZ_signaling PDZ doma 99.4 5E-12 1.1E-16 81.1 11.5 79 65-144 2-81 (82)
6 KOG3209|consensus 99.4 2.1E-12 4.6E-17 109.2 9.9 87 62-148 648-736 (984)
7 smart00228 PDZ Domain present 99.4 2.2E-11 4.9E-16 78.3 12.3 82 65-147 3-84 (85)
8 KOG3551|consensus 99.3 3E-12 6.4E-17 101.8 6.4 86 65-150 86-172 (506)
9 cd00136 PDZ PDZ domain, also c 99.3 4.4E-11 9.5E-16 74.5 9.6 67 75-144 2-69 (70)
10 KOG0609|consensus 99.2 7.5E-10 1.6E-14 91.7 12.7 131 5-147 74-205 (542)
11 PF13180 PDZ_2: PDZ domain; PD 99.2 3.9E-10 8.4E-15 72.7 8.8 72 75-150 2-75 (82)
12 KOG3651|consensus 99.1 3.2E-10 7E-15 87.9 8.6 107 64-170 5-115 (429)
13 KOG3542|consensus 99.1 9.1E-10 2E-14 93.4 9.7 130 20-162 503-634 (1283)
14 cd00988 PDZ_CTP_protease PDZ d 99.1 1.1E-09 2.5E-14 70.7 7.9 70 74-147 2-72 (85)
15 KOG3606|consensus 99.0 1.6E-09 3.5E-14 82.8 7.3 85 64-148 159-254 (358)
16 KOG1892|consensus 99.0 2.5E-09 5.5E-14 93.4 9.4 92 62-154 932-1026(1629)
17 KOG3571|consensus 99.0 2.2E-09 4.7E-14 88.2 8.3 87 63-149 249-341 (626)
18 KOG3553|consensus 98.9 1.1E-09 2.5E-14 71.5 4.5 70 76-147 37-116 (124)
19 KOG3580|consensus 98.9 3.7E-09 7.9E-14 88.7 8.0 85 63-149 8-99 (1027)
20 KOG3552|consensus 98.9 3.8E-09 8.3E-14 92.0 6.5 90 63-160 55-148 (1298)
21 cd00991 PDZ_archaeal_metallopr 98.8 3.8E-08 8.2E-13 62.9 8.8 61 87-150 9-71 (79)
22 COG0793 Prc Periplasmic protea 98.8 3.8E-08 8.2E-13 81.2 9.9 74 71-147 97-171 (406)
23 cd00990 PDZ_glycyl_aminopeptid 98.8 7.3E-08 1.6E-12 61.4 8.5 67 76-149 3-69 (80)
24 PLN00049 carboxyl-terminal pro 98.7 6E-08 1.3E-12 79.7 9.4 75 74-149 85-163 (389)
25 PRK11186 carboxy-terminal prot 98.7 8.2E-08 1.8E-12 83.3 10.4 72 73-147 243-320 (667)
26 cd00989 PDZ_metalloprotease PD 98.7 1.4E-07 3.1E-12 59.8 9.0 58 89-149 13-71 (79)
27 cd00987 PDZ_serine_protease PD 98.6 3.6E-07 7.9E-12 59.3 8.6 59 88-149 24-84 (90)
28 TIGR00225 prc C-terminal pepti 98.6 1.7E-07 3.7E-12 75.6 8.3 72 74-149 51-123 (334)
29 KOG3605|consensus 98.6 6.6E-08 1.4E-12 81.8 5.6 89 63-152 645-739 (829)
30 cd00986 PDZ_LON_protease PDZ d 98.6 4.6E-07 1E-11 57.7 8.1 58 89-150 9-68 (79)
31 KOG3580|consensus 98.5 4E-07 8.7E-12 76.7 8.4 89 63-155 407-497 (1027)
32 KOG3938|consensus 98.5 3.7E-07 8.1E-12 69.9 6.7 126 19-146 71-209 (334)
33 TIGR01713 typeII_sec_gspC gene 98.4 1.4E-06 3.1E-11 67.8 7.9 72 76-150 179-252 (259)
34 TIGR02037 degP_htrA_DO peripla 98.3 2.7E-06 5.9E-11 70.8 8.0 60 88-150 257-318 (428)
35 KOG3605|consensus 98.3 8.9E-07 1.9E-11 75.1 4.5 74 62-143 735-810 (829)
36 PRK10139 serine endoprotease; 98.2 5E-06 1.1E-10 69.7 8.4 59 88-149 390-448 (455)
37 PRK10942 serine endoprotease; 98.2 5.8E-06 1.3E-10 69.7 8.4 59 88-149 408-466 (473)
38 PRK10139 serine endoprotease; 98.2 9E-06 2E-10 68.2 9.1 61 87-150 289-351 (455)
39 TIGR00054 RIP metalloprotease 98.2 8.4E-06 1.8E-10 67.8 8.1 59 89-150 204-263 (420)
40 TIGR02037 degP_htrA_DO peripla 98.2 9.6E-06 2.1E-10 67.5 8.4 60 88-150 362-423 (428)
41 TIGR02038 protease_degS peripl 98.1 1E-05 2.3E-10 65.7 7.9 60 88-150 278-339 (351)
42 PRK10898 serine endoprotease; 98.1 1.8E-05 3.8E-10 64.4 8.5 60 88-150 279-340 (353)
43 PRK10942 serine endoprotease; 98.1 1.5E-05 3.2E-10 67.2 7.8 61 87-150 310-372 (473)
44 PRK10779 zinc metallopeptidase 98.1 2E-05 4.4E-10 66.0 8.4 59 89-150 222-281 (449)
45 PRK10779 zinc metallopeptidase 98.1 8.3E-06 1.8E-10 68.4 6.0 57 90-149 128-186 (449)
46 PF04495 GRASP55_65: GRASP55/6 97.8 9.1E-05 2E-09 52.3 7.3 81 63-146 10-100 (138)
47 TIGR02860 spore_IV_B stage IV 97.8 0.00013 2.8E-09 60.0 9.0 69 74-150 96-173 (402)
48 KOG0606|consensus 97.8 0.00014 3E-09 65.6 8.8 79 66-145 629-714 (1205)
49 TIGR03279 cyano_FeS_chp putati 97.7 0.00012 2.7E-09 60.5 6.2 52 92-148 2-54 (433)
50 TIGR00054 RIP metalloprotease 97.6 0.00016 3.6E-09 60.1 7.0 58 88-148 128-185 (420)
51 PF14685 Tricorn_PDZ: Tricorn 97.5 0.00078 1.7E-08 43.8 7.6 69 76-149 3-81 (88)
52 KOG3129|consensus 97.4 0.00072 1.6E-08 50.4 6.7 61 89-150 140-202 (231)
53 COG0265 DegQ Trypsin-like seri 97.2 0.0011 2.3E-08 53.8 6.3 62 87-151 269-332 (347)
54 KOG3532|consensus 97.1 0.0031 6.8E-08 54.6 8.5 70 74-148 386-455 (1051)
55 PRK09681 putative type II secr 97.1 0.0017 3.6E-08 50.9 6.1 47 102-151 221-269 (276)
56 KOG1738|consensus 97.0 0.0013 2.8E-08 56.2 5.4 76 71-148 210-285 (638)
57 COG3975 Predicted protease wit 97.0 0.0025 5.4E-08 53.7 6.9 42 74-119 451-492 (558)
58 PF02828 L27: L27 domain; Int 96.7 0.0038 8.2E-08 37.0 4.2 36 4-39 19-54 (56)
59 KOG4407|consensus 96.4 0.0039 8.6E-08 57.4 4.1 54 90-144 145-198 (1973)
60 COG3480 SdrC Predicted secrete 96.3 0.019 4.1E-07 45.7 7.1 56 89-148 131-188 (342)
61 KOG1320|consensus 96.3 0.017 3.6E-07 48.6 6.9 58 89-149 399-458 (473)
62 COG3031 PulC Type II secretory 96.1 0.041 8.9E-07 42.1 7.6 69 67-150 198-268 (275)
63 KOG1421|consensus 96.0 0.014 3.1E-07 50.7 5.3 58 90-151 305-363 (955)
64 PF12812 PDZ_1: PDZ-like domai 95.2 0.071 1.5E-06 33.8 5.2 46 90-138 32-77 (78)
65 KOG3834|consensus 93.6 0.19 4.1E-06 41.7 5.5 57 88-145 15-71 (462)
66 KOG4371|consensus 93.2 0.16 3.4E-06 46.4 4.9 84 65-152 1149-1232(1332)
67 smart00569 L27 domain in recep 92.9 0.27 5.8E-06 28.5 4.2 31 6-36 20-50 (55)
68 KOG4371|consensus 89.7 0.64 1.4E-05 42.7 4.9 81 65-146 1247-1328(1332)
69 PF09045 L27_2: L27_2; InterP 89.0 0.79 1.7E-05 27.1 3.4 28 4-31 24-51 (58)
70 COG0750 Predicted membrane-ass 86.1 3.6 7.8E-05 33.5 7.0 53 91-146 132-188 (375)
71 KOG3834|consensus 84.3 5.4 0.00012 33.3 7.1 81 62-144 76-164 (462)
72 PF09058 L27_1: L27_1; InterP 82.0 1.1 2.3E-05 27.2 1.7 23 6-28 32-54 (64)
73 KOG1421|consensus 81.1 4.5 9.8E-05 35.9 5.7 49 87-139 861-909 (955)
74 KOG0792|consensus 80.9 0.82 1.8E-05 42.0 1.3 64 74-137 716-798 (1144)
75 PF11874 DUF3394: Domain of un 78.2 4.8 0.0001 29.8 4.4 39 75-117 112-150 (183)
76 KOG2921|consensus 67.0 7.8 0.00017 32.2 3.6 37 87-123 219-255 (484)
77 KOG1703|consensus 56.2 4.9 0.00011 34.3 0.7 71 75-147 9-79 (479)
78 PRK15464 cold shock-like prote 53.2 25 0.00054 21.6 3.4 44 66-115 8-53 (70)
79 PRK13810 orotate phosphoribosy 51.9 41 0.00088 24.9 4.9 36 105-140 117-152 (187)
80 PRK09937 stationary phase/star 50.0 47 0.001 20.6 4.3 44 66-115 5-50 (74)
81 KOG0572|consensus 46.2 48 0.001 27.7 4.8 41 108-148 354-395 (474)
82 KOG0708|consensus 45.5 25 0.00054 28.9 3.1 48 115-162 2-49 (359)
83 COG5233 GRH1 Peripheral Golgi 43.2 16 0.00035 29.6 1.7 31 90-121 65-95 (417)
84 COG1278 CspC Cold shock protei 42.6 64 0.0014 19.8 3.9 44 66-115 5-50 (67)
85 PRK10354 RNA chaperone/anti-te 42.0 80 0.0017 19.2 4.4 43 67-115 9-53 (70)
86 PRK15463 cold shock-like prote 40.9 41 0.0009 20.6 3.0 44 66-115 8-53 (70)
87 PRK09890 cold shock protein Cs 39.8 88 0.0019 19.1 4.4 44 66-115 8-53 (70)
88 COG0461 PyrE Orotate phosphori 38.3 85 0.0018 23.6 4.8 35 106-140 108-142 (201)
89 TIGR01744 XPRTase xanthine pho 38.0 76 0.0017 23.5 4.6 34 107-140 114-147 (191)
90 PRK14998 cold shock-like prote 36.5 1E+02 0.0023 19.0 4.4 44 66-115 5-50 (73)
91 PRK09219 xanthine phosphoribos 36.4 57 0.0012 24.2 3.7 35 106-140 113-147 (189)
92 KOG4407|consensus 35.8 22 0.00048 34.3 1.6 84 59-144 42-150 (1973)
93 COG0034 PurF Glutamine phospho 35.4 92 0.002 26.6 5.0 40 107-146 345-385 (470)
94 PRK10943 cold shock-like prote 34.7 59 0.0013 19.8 3.0 44 66-115 7-52 (69)
95 PRK05500 bifunctional orotidin 34.6 89 0.0019 26.8 4.9 37 104-140 387-423 (477)
96 PRK13812 orotate phosphoribosy 34.3 1E+02 0.0023 22.4 4.7 35 105-139 102-136 (176)
97 PRK09507 cspE cold shock prote 33.0 1.1E+02 0.0025 18.5 4.1 44 66-115 7-52 (69)
98 PRK13809 orotate phosphoribosy 32.3 1.1E+02 0.0025 22.9 4.8 34 106-139 114-147 (206)
99 cd01433 Ribosomal_L16_L10e Rib 31.8 43 0.00093 22.5 2.2 31 106-140 75-105 (112)
100 PRK06388 amidophosphoribosyltr 30.9 68 0.0015 27.5 3.7 40 107-146 353-393 (474)
101 PLN02293 adenine phosphoribosy 30.2 1.3E+02 0.0028 22.2 4.7 35 105-139 120-154 (187)
102 TIGR00336 pyrE orotate phospho 29.6 1.2E+02 0.0027 21.8 4.4 34 106-139 104-137 (173)
103 COG0503 Apt Adenine/guanine ph 29.5 1.1E+02 0.0023 22.5 4.1 35 106-140 112-146 (179)
104 PRK09203 rplP 50S ribosomal pr 29.3 52 0.0011 23.1 2.3 28 106-138 96-123 (138)
105 PRK06781 amidophosphoribosyltr 28.8 1.1E+02 0.0024 26.2 4.6 40 108-147 346-386 (471)
106 COG4273 Uncharacterized conser 28.5 1.3E+02 0.0028 21.0 4.0 48 91-144 49-98 (135)
107 COG1625 Fe-S oxidoreductase, r 28.0 55 0.0012 27.4 2.6 33 91-124 4-37 (414)
108 KOG1945|consensus 26.7 42 0.00092 27.5 1.6 77 67-143 103-185 (377)
109 PF00313 CSD: 'Cold-shock' DNA 24.9 56 0.0012 19.3 1.6 42 67-114 5-48 (66)
110 TIGR02381 cspD cold shock doma 24.5 83 0.0018 19.0 2.4 44 66-115 5-50 (68)
111 PRK06031 phosphoribosyltransfe 23.0 2.7E+02 0.0059 21.4 5.4 33 107-139 151-183 (233)
112 KOG1712|consensus 22.6 1.8E+02 0.0038 21.3 4.0 36 105-140 117-152 (183)
113 PRK07349 amidophosphoribosyltr 22.5 1.6E+02 0.0034 25.5 4.4 39 108-146 375-414 (500)
114 PRK09213 pur operon repressor; 21.9 1.8E+02 0.0039 23.0 4.3 33 107-139 193-225 (271)
115 PRK07631 amidophosphoribosyltr 21.4 1.5E+02 0.0033 25.4 4.1 41 107-147 345-386 (475)
116 PRK12560 adenine phosphoribosy 21.4 2.3E+02 0.005 20.8 4.7 33 107-139 111-143 (187)
117 TIGR01164 rplP_bact ribosomal 21.0 70 0.0015 22.1 1.7 27 106-137 95-121 (126)
118 PRK08341 amidophosphoribosyltr 20.8 1.6E+02 0.0034 25.0 4.0 39 108-146 332-371 (442)
119 cd04458 CSP_CDS Cold-Shock Pro 20.2 1.7E+02 0.0038 17.0 3.2 43 67-115 5-49 (65)
No 1
>KOG3550|consensus
Probab=100.00 E-value=4.6e-36 Score=208.63 Aligned_cols=170 Identities=86% Similarity=1.247 Sum_probs=165.3
Q ss_pred CCCChhcHHHHHHhhhhhHHHHHHHHHHHHHhhhccCCCcccccccchhhhhhhhhhccCCCCCEEEEEecCCCCCCeEE
Q psy12578 1 GEVPVTKLSALQKVLQSDFFNCVRDVYEHVYETVDIQGSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNV 80 (172)
Q Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~g~G~~l 80 (172)
|++|+++|..|+++|+|.||.++.|+|+++|++++..+++...+.+..+++++.|.+++....||.|.|.|...|+||.+
T Consensus 28 gevp~~kl~alq~vlqsef~~avrevye~vyetidi~~s~eira~atakatvaafaaseghahprvvelpktdeglgfnv 107 (207)
T KOG3550|consen 28 GEVPPQKLQALQKVLQSEFCTAVREVYEHVYETIDIDGSPEIRAAATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNV 107 (207)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHhhhhhhHHHHHHHHHhccCCCCceeecCccccccceee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCchhHHHHHHhhh
Q psy12578 81 MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDK 160 (172)
Q Consensus 81 ~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~~~~~~ 160 (172)
.||++.+.++||++++|||.|++.|.|+.||++++|||.++.+-.|+.++.+++.+.++|.|.|++.|+.+++++.+|.+
T Consensus 108 mggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvrytpkvleeme~rfek 187 (207)
T KOG3550|consen 108 MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRYTPKVLEEMEARFEK 187 (207)
T ss_pred ccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEecChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCC
Q psy12578 161 QRTARRRQPP 170 (172)
Q Consensus 161 ~~~~~~~~~~ 170 (172)
.|...|||+.
T Consensus 188 ~r~~rrrqq~ 197 (207)
T KOG3550|consen 188 QRSARRRQQS 197 (207)
T ss_pred HHHHHHhhcC
Confidence 9988877653
No 2
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.68 E-value=7e-16 Score=99.41 Aligned_cols=79 Identities=42% Similarity=0.753 Sum_probs=71.6
Q ss_pred EEEEec-CCCCCCeEEeccCCCC-CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12578 66 VVELPK-TDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 143 (172)
Q Consensus 66 ~v~l~~-~~~g~G~~l~~~~~~~-~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 143 (172)
+|++.| ...+|||.+.++.+.. .+++|..|.++|+|+++| |++||+|++|||+++.++++.++..+++.+++.++|+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~ 79 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT 79 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence 477888 6689999999876543 579999999999999999 9999999999999999999999999999999899998
Q ss_pred EE
Q psy12578 144 VR 145 (172)
Q Consensus 144 v~ 145 (172)
|+
T Consensus 80 V~ 81 (81)
T PF00595_consen 80 VQ 81 (81)
T ss_dssp EE
T ss_pred EC
Confidence 74
No 3
>KOG3209|consensus
Probab=99.52 E-value=6e-14 Score=118.34 Aligned_cols=86 Identities=37% Similarity=0.648 Sum_probs=79.6
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
....+|+|.++..||||+|+||.++..++||.++..+|||.+.|++++||+|++|||....+++|+.++.+|++.+..+.
T Consensus 897 ~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vl 976 (984)
T KOG3209|consen 897 GDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVL 976 (984)
T ss_pred CCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred EEEEEC
Q psy12578 142 LVVRYT 147 (172)
Q Consensus 142 l~v~r~ 147 (172)
|.+++.
T Consensus 977 l~Lr~g 982 (984)
T KOG3209|consen 977 LLLRRG 982 (984)
T ss_pred EEeccC
Confidence 777654
No 4
>KOG3549|consensus
Probab=99.50 E-value=5.6e-14 Score=110.35 Aligned_cols=90 Identities=34% Similarity=0.542 Sum_probs=83.1
Q ss_pred ccCCCCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12578 58 SEGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136 (172)
Q Consensus 58 ~~~~~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 136 (172)
++..+..|+|+|.+.. +|||++|.||.+..-|+.|+++.++-+|+..|.|.+||.|++|||+.|..++|++++++++++
T Consensus 49 ~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA 128 (505)
T KOG3549|consen 49 PPMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA 128 (505)
T ss_pred CCccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc
Confidence 3345677999999976 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEC
Q psy12578 137 QRSVKLVVRYT 147 (172)
Q Consensus 137 ~~~v~l~v~r~ 147 (172)
|+.|+|+|.+.
T Consensus 129 GdeVtlTV~~l 139 (505)
T KOG3549|consen 129 GDEVTLTVKHL 139 (505)
T ss_pred CCEEEEEeHhh
Confidence 99999999543
No 5
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.43 E-value=5e-12 Score=81.13 Aligned_cols=79 Identities=53% Similarity=0.861 Sum_probs=68.4
Q ss_pred EEEEEecC-CCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12578 65 RVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 143 (172)
Q Consensus 65 ~~v~l~~~-~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 143 (172)
+.+.+.+. ..+|||.+.++.....+++|..|.++++|+.+| |++||+|++|||.++.++++.++..+++.....+.|+
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 56778776 588999998764334579999999999999988 9999999999999999999999999999877777776
Q ss_pred E
Q psy12578 144 V 144 (172)
Q Consensus 144 v 144 (172)
+
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 5
No 6
>KOG3209|consensus
Probab=99.39 E-value=2.1e-12 Score=109.15 Aligned_cols=87 Identities=38% Similarity=0.743 Sum_probs=79.7
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS 139 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~ 139 (172)
.....|.|.+...||||.|.||.+.+.+++|..|++.|+|+..|+|+.||.|+.|+|++|.+.+|.+++.++..+ .+.
T Consensus 648 dk~ldV~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArngh 727 (984)
T KOG3209|consen 648 DKELDVFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGH 727 (984)
T ss_pred ccceeEEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCc
Confidence 355678999999999999999999999999999999999999999999999999999999999999999999875 356
Q ss_pred EEEEEEECC
Q psy12578 140 VKLVVRYTP 148 (172)
Q Consensus 140 v~l~v~r~~ 148 (172)
|.|+|+|..
T Consensus 728 V~LtVRRkv 736 (984)
T KOG3209|consen 728 VNLTVRRKV 736 (984)
T ss_pred eEEEEeeee
Confidence 999998764
No 7
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.38 E-value=2.2e-11 Score=78.34 Aligned_cols=82 Identities=48% Similarity=0.743 Sum_probs=70.3
Q ss_pred EEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12578 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144 (172)
Q Consensus 65 ~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v 144 (172)
..+.+.+....|||.+........+++|..|.++++|+.+| |++||+|++|||..+.++++.+....++..+..+.|++
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i 81 (85)
T smart00228 3 RLVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTV 81 (85)
T ss_pred EEEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 45677776688999998754322679999999999999999 99999999999999999999999988888777899998
Q ss_pred EEC
Q psy12578 145 RYT 147 (172)
Q Consensus 145 ~r~ 147 (172)
.|+
T Consensus 82 ~r~ 84 (85)
T smart00228 82 LRG 84 (85)
T ss_pred EeC
Confidence 875
No 8
>KOG3551|consensus
Probab=99.32 E-value=3e-12 Score=101.84 Aligned_cols=86 Identities=44% Similarity=0.686 Sum_probs=79.6
Q ss_pred EEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12578 65 RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 143 (172)
Q Consensus 65 ~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 143 (172)
|.|++.|.. +|+|++|.||.+...++.|+.+.+|-+|++.+.|..||.|++|||.++.+.+|+++++.++..|..|.|.
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~le 165 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLE 165 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeee
Confidence 789998855 8999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEECCch
Q psy12578 144 VRYTPKV 150 (172)
Q Consensus 144 v~r~~~~ 150 (172)
|++.-++
T Consensus 166 vKy~REv 172 (506)
T KOG3551|consen 166 VKYMREV 172 (506)
T ss_pred eeeehhc
Confidence 8765433
No 9
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.30 E-value=4.4e-11 Score=74.52 Aligned_cols=67 Identities=40% Similarity=0.682 Sum_probs=59.3
Q ss_pred CCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-CeEEEEE
Q psy12578 75 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-RSVKLVV 144 (172)
Q Consensus 75 g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v 144 (172)
++||.+....+ .+++|..|.+++||+.+| |++||+|++|||.++.++++.++..+++... ..+.|++
T Consensus 2 ~~G~~~~~~~~--~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE--GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC--CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 68999987542 479999999999999998 9999999999999999999999999999875 5688876
No 10
>KOG0609|consensus
Probab=99.16 E-value=7.5e-10 Score=91.65 Aligned_cols=131 Identities=25% Similarity=0.415 Sum_probs=102.1
Q ss_pred hhcHHHHHHhhhhhHHHHHHHHHHHHHhhhccCCCcccccccchhhhhhhhhhccCCCCCEEEEEecC-CCCCCeEEecc
Q psy12578 5 VTKLSALQKVLQSDFFNCVRDVYEHVYETVDIQGSPDVRASATAKATVAAFAASEGHAHPRVVELPKT-DEGLGFNVMGG 83 (172)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~~g~G~~l~~~ 83 (172)
..+...|..+|+.++|++++..++.+....+ ..+....... .........+.+.+.+. +..+|.+++..
T Consensus 74 ~~~~~eL~~iL~~ph~~~~l~ahd~vas~~~--~~~~~p~l~~--------~~~e~~~~vriv~i~k~~~eplG~Tik~~ 143 (542)
T KOG0609|consen 74 SSEVQELRQLLNTPHLQALLQAHDTVASKYD--QPPFSPYLNP--------ESPEPVEAVRIVRIVKNTGEPLGATIRVE 143 (542)
T ss_pred ChhHHHHHHHhcchhHhHHHHHhHHHhhccC--CCCCccccCC--------CcccccceeEEEEEeecCCCccceEEEec
Confidence 3466789999999999999999988875521 1111111000 11223345688888886 78999999874
Q ss_pred CCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEEC
Q psy12578 84 KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 147 (172)
Q Consensus 84 ~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 147 (172)
.. ..++|.+++.||.+++.|.|++||.|.+|||+.+.+....++..+++.+.++++++|...
T Consensus 144 e~--~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~ 205 (542)
T KOG0609|consen 144 ED--TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPS 205 (542)
T ss_pred cC--CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEccc
Confidence 32 259999999999999999999999999999999999999999999999999999998543
No 11
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.15 E-value=3.9e-10 Score=72.68 Aligned_cols=72 Identities=29% Similarity=0.499 Sum_probs=56.9
Q ss_pred CCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 75 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 75 g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
++|+.+..... ..++.|..|.++|||+++| |++||+|++|||..+. +..++...+.. .+.++.|++.|+++.
T Consensus 2 ~lGv~~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 2 GLGVTVQNLSD-TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp E-SEEEEECSC-SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred EECeEEEEccC-CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 47888876332 3479999999999999999 9999999999999994 45777777743 356799999998754
No 12
>KOG3651|consensus
Probab=99.12 E-value=3.2e-10 Score=87.91 Aligned_cols=107 Identities=21% Similarity=0.423 Sum_probs=89.8
Q ss_pred CEEEEEecCCCC-CCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 64 PRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 64 ~~~v~l~~~~~g-~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
+.+|+|.|+..+ +|++|-||....+.+||.+|..++||++.|+++.||.|++|||+.|.+.+..++.++|+-..+.|.+
T Consensus 5 ~~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I 84 (429)
T KOG3651|consen 5 SETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI 84 (429)
T ss_pred cCcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence 356899998755 7999999888788899999999999999999999999999999999999999999999999888888
Q ss_pred EEE---ECCchhHHHHHHhhhcccccccCCC
Q psy12578 143 VVR---YTPKVLEEMEMRFDKQRTARRRQPP 170 (172)
Q Consensus 143 ~v~---r~~~~~~~~~~~~~~~~~~~~~~~~ 170 (172)
.+. -+|..-+.+..-+.+.++...+...
T Consensus 85 hyNKL~adp~qGktLDI~lKKvKHrvVen~s 115 (429)
T KOG3651|consen 85 HYNKLEADPTQGKTLDILLKKVKHRVVENVS 115 (429)
T ss_pred EehhcccCcccCccHHHHHHHHHHHHHhhcc
Confidence 763 3455555666777777776665543
No 13
>KOG3542|consensus
Probab=99.07 E-value=9.1e-10 Score=93.41 Aligned_cols=130 Identities=32% Similarity=0.504 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhhccCCCcccccccchhhhhhhhhhccCCCCCEEEEEecCC--CCCCeEEeccCCCCCCeEEEeecC
Q psy12578 20 FNCVRDVYEHVYETVDIQGSPDVRASATAKATVAAFAASEGHAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIP 97 (172)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~--~g~G~~l~~~~~~~~~~~V~~v~~ 97 (172)
+..++|.|+..++...+.+..+..+.+ .....++|.|.|.|.. ..+-|.+.||.+.+-++||..|.+
T Consensus 503 MtrfLEeFE~nLEr~kM~ghLrLLNIA-----------CaaKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~p 571 (1283)
T KOG3542|consen 503 MTRFLEEFEGNLERDKMHGHLRLLNIA-----------CAAKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFP 571 (1283)
T ss_pred HHHHHHHHhhhhhhccccceeeehhhh-----------hhhcccceeEEEecccccCCceeEeccCccccceeEEeeecC
Confidence 355666666666655555554433321 1223578899998844 789999999999888999999999
Q ss_pred CChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCchhHHHHHHhhhcc
Q psy12578 98 GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQR 162 (172)
Q Consensus 98 g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~~~~~~~~ 162 (172)
|+.|++.| |+.||+|++|||++..+.+...+..++++.. .++|+|+.+--.++++..+....+
T Consensus 572 gskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnt-hLtltvKtNvfvfKEll~r~e~eK 634 (1283)
T KOG3542|consen 572 GSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNT-HLTLTVKTNVFVFKELLGRIEHEK 634 (1283)
T ss_pred CchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCc-eEEEEEecceeeHHHHHhhhhhhc
Confidence 99999999 9999999999999999999999999998763 689999998888998887776665
No 14
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.06 E-value=1.1e-09 Score=70.65 Aligned_cols=70 Identities=26% Similarity=0.551 Sum_probs=59.5
Q ss_pred CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEEC
Q psy12578 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYT 147 (172)
Q Consensus 74 ~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~ 147 (172)
.++|+.+... ..+++|..+.+++||+++| |++||+|++|||..+.++++.++..+++.. +..+.+++.|+
T Consensus 2 ~~lG~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYD---DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEc---CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 4678888642 3569999999999999998 999999999999999998888988888764 55699999887
No 15
>KOG3606|consensus
Probab=98.99 E-value=1.6e-09 Score=82.81 Aligned_cols=85 Identities=32% Similarity=0.580 Sum_probs=73.2
Q ss_pred CEEEEEecCC--CCCCeEEeccC---------CCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12578 64 PRVVELPKTD--EGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 132 (172)
Q Consensus 64 ~~~v~l~~~~--~g~G~~l~~~~---------~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~ 132 (172)
-|.|+|.|-+ ..+||.|+.|. +.-.|+||+++.+||.|+..|.|.+.|+|++|||+.|.+.+.+++..+
T Consensus 159 HRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDM 238 (358)
T KOG3606|consen 159 HRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDM 238 (358)
T ss_pred hhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHH
Confidence 3668888844 78999998655 345689999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEEEECC
Q psy12578 133 LKQAQRSVKLVVRYTP 148 (172)
Q Consensus 133 l~~~~~~v~l~v~r~~ 148 (172)
+-.....+.++|+...
T Consensus 239 MvANshNLIiTVkPAN 254 (358)
T KOG3606|consen 239 MVANSHNLIITVKPAN 254 (358)
T ss_pred HhhcccceEEEecccc
Confidence 9888778888886544
No 16
>KOG1892|consensus
Probab=98.99 E-value=2.5e-09 Score=93.41 Aligned_cols=92 Identities=32% Similarity=0.547 Sum_probs=78.2
Q ss_pred CCCEEEEEecCCCCCCeEEeccC---CCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~---~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
.+..+|+|.|. .|+|++|...+ +..-|+||+.|.+||+|+..|+|..||+++.|||+.+.+++.+.+..++-..|.
T Consensus 932 pei~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~ 1010 (1629)
T KOG1892|consen 932 PEIITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGN 1010 (1629)
T ss_pred CceEEEEEecc-CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCC
Confidence 34566788877 89999987533 224589999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCchhHHH
Q psy12578 139 SVKLVVRYTPKVLEEM 154 (172)
Q Consensus 139 ~v~l~v~r~~~~~~~~ 154 (172)
.|.|.|...+-.+.-+
T Consensus 1011 vV~leVaKqgAiyhGL 1026 (1629)
T KOG1892|consen 1011 VVHLEVAKQGAIYHGL 1026 (1629)
T ss_pred eEEEehhhhhhHHHHH
Confidence 9999998776555543
No 17
>KOG3571|consensus
Probab=98.98 E-value=2.2e-09 Score=88.23 Aligned_cols=87 Identities=30% Similarity=0.449 Sum_probs=73.1
Q ss_pred CCEEEEEecCCC-CCCeEEeccC--CCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC---
Q psy12578 63 HPRVVELPKTDE-GLGFNVMGGK--EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--- 136 (172)
Q Consensus 63 ~~~~v~l~~~~~-g~G~~l~~~~--~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--- 136 (172)
...+|+|..+.. -||++|.|-. ..++|+||..|++||+.+..|++.+||.|++||.+++.+++.++++..|+..
T Consensus 249 nIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~ 328 (626)
T KOG3571|consen 249 NIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR 328 (626)
T ss_pred eEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence 445666766664 4899999833 2367899999999999999999999999999999999999999999999975
Q ss_pred CCeEEEEEEECCc
Q psy12578 137 QRSVKLVVRYTPK 149 (172)
Q Consensus 137 ~~~v~l~v~r~~~ 149 (172)
.++++|+|..+..
T Consensus 329 ~gPi~ltvAk~~D 341 (626)
T KOG3571|consen 329 PGPIKLTVAKCWD 341 (626)
T ss_pred CCCeEEEEeeccC
Confidence 5679999976653
No 18
>KOG3553|consensus
Probab=98.95 E-value=1.1e-09 Score=71.53 Aligned_cols=70 Identities=31% Similarity=0.576 Sum_probs=58.9
Q ss_pred CCeEEeccCCC----------CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE
Q psy12578 76 LGFNVMGGKEQ----------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 145 (172)
Q Consensus 76 ~G~~l~~~~~~----------~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~ 145 (172)
+||.|-||.+. +.|+||.+|..||||+.+| |+.+|.|++|||-+..-.+|+.+++.|+... .+.|.|.
T Consensus 37 ~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~~-vl~mLVa 114 (124)
T KOG3553|consen 37 LGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKEE-VLRMLVA 114 (124)
T ss_pred EEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHhH-HHHHHHH
Confidence 79999888754 4579999999999999999 9999999999999999999999999988742 3555554
Q ss_pred EC
Q psy12578 146 YT 147 (172)
Q Consensus 146 r~ 147 (172)
|.
T Consensus 115 R~ 116 (124)
T KOG3553|consen 115 RQ 116 (124)
T ss_pred hh
Confidence 43
No 19
>KOG3580|consensus
Probab=98.93 E-value=3.7e-09 Score=88.70 Aligned_cols=85 Identities=34% Similarity=0.589 Sum_probs=74.3
Q ss_pred CCEEEEEecCC-CCCCeEEeccCCCCC------CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12578 63 HPRVVELPKTD-EGLGFNVMGGKEQNS------PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135 (172)
Q Consensus 63 ~~~~v~l~~~~-~g~G~~l~~~~~~~~------~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 135 (172)
+-.+++|.|.+ .|||+.|.||.+... -++|+.|.+||||+ |.|+.+|.|+.|||.++.+..|.-+++.|+.
T Consensus 8 EQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrk 85 (1027)
T KOG3580|consen 8 EQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRK 85 (1027)
T ss_pred hhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHh
Confidence 34689999977 899999999886533 37899999999999 5799999999999999999999999999999
Q ss_pred CCCeEEEEEEECCc
Q psy12578 136 AQRSVKLVVRYTPK 149 (172)
Q Consensus 136 ~~~~v~l~v~r~~~ 149 (172)
++....++|+|.-+
T Consensus 86 sgK~A~ItvkRprk 99 (1027)
T KOG3580|consen 86 SGKVAAITVKRPRK 99 (1027)
T ss_pred hccceeEEecccce
Confidence 99888888877643
No 20
>KOG3552|consensus
Probab=98.88 E-value=3.8e-09 Score=91.96 Aligned_cols=90 Identities=29% Similarity=0.502 Sum_probs=73.3
Q ss_pred CCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 63 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 63 ~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
.||.|.+.+.. -||||.- +.+++|..|.+|||+. |.|.+||+|++|||.+|.+.+++.++++++.+..+|.
T Consensus 55 ~pr~vq~~r~~~lGFgfva------grPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ 126 (1298)
T KOG3552|consen 55 EPRQVQLQRNASLGFGFVA------GRPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVN 126 (1298)
T ss_pred cchhhhhhccccccceeec------CCceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcc
Confidence 48888888865 6777754 2579999999999998 5699999999999999999999999999999999999
Q ss_pred EEEEEC---CchhHHHHHHhhh
Q psy12578 142 LVVRYT---PKVLEEMEMRFDK 160 (172)
Q Consensus 142 l~v~r~---~~~~~~~~~~~~~ 160 (172)
|+|.+. |.....+....++
T Consensus 127 ltV~qPc~~p~pKStflSa~Kr 148 (1298)
T KOG3552|consen 127 LTVCQPCVLPGPKSTFLSAGKR 148 (1298)
T ss_pred eEEeccccCCCchhhhhhhhhh
Confidence 999873 4344444444333
No 21
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.84 E-value=3.8e-08 Score=62.92 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=52.0
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 150 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~ 150 (172)
..|+.|..|.+++||+.+| |+.||+|++|||..+. ++.++...+... +..+.+++.|+++.
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~~ 71 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTTK 71 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCEE
Confidence 4579999999999999999 9999999999999996 457888888764 56799999988743
No 22
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=3.8e-08 Score=81.18 Aligned_cols=74 Identities=24% Similarity=0.392 Sum_probs=65.2
Q ss_pred cCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EEEEEEEC
Q psy12578 71 KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VKLVVRYT 147 (172)
Q Consensus 71 ~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~-v~l~v~r~ 147 (172)
....|+|+.+.-... .++.|..+.+++||+++| |++||.|+.|||.++.+++.++++..++...++ |+|++.|.
T Consensus 97 ~~~~GiG~~i~~~~~--~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 97 GEFGGIGIELQMEDI--GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred ccccceeEEEEEecC--CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 345889999976432 579999999999999999 999999999999999999999999999988665 99999996
No 23
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.77 E-value=7.3e-08 Score=61.41 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=51.0
Q ss_pred CCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12578 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 76 ~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 149 (172)
+|+.+... +.++.|..|.++|+|+.+| |++||+|++|||..+.+ ..++...+ ..+..+.+++.|++.
T Consensus 3 ~G~~~~~~---~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~ 69 (80)
T cd00990 3 LGLTLDKE---EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDR 69 (80)
T ss_pred ccEEEEcc---CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCE
Confidence 57777532 3469999999999999999 99999999999999965 33333322 245578999988764
No 24
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.75 E-value=6e-08 Score=79.73 Aligned_cols=75 Identities=31% Similarity=0.508 Sum_probs=61.5
Q ss_pred CCCCeEEeccCCCC---CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEECCc
Q psy12578 74 EGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYTPK 149 (172)
Q Consensus 74 ~g~G~~l~~~~~~~---~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 149 (172)
.|+|+.+....... .++.|..|.++|||+.+| |+.||+|++|||.++.+++..++..+++.. +..+.|+|.|++.
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~ 163 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE 163 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 68898886422111 268999999999999999 999999999999999998888888888764 4569999988764
No 25
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.75 E-value=8.2e-08 Score=83.32 Aligned_cols=72 Identities=28% Similarity=0.377 Sum_probs=59.1
Q ss_pred CCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECC-----eeCCCCCHHHHHHHHHhCCCe-EEEEEEE
Q psy12578 73 DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG-----VSVEGEDHGKAVELLKQAQRS-VKLVVRY 146 (172)
Q Consensus 73 ~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng-----~~v~~~~~~~~~~~l~~~~~~-v~l~v~r 146 (172)
-.|+|+.+... ...++|..|.+||||++++.|++||+|++||+ .++.+++.++++.+|++..++ |+|+|.|
T Consensus 243 ~~GIGa~l~~~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r 319 (667)
T PRK11186 243 LEGIGAVLQMD---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILP 319 (667)
T ss_pred eeEEEEEEEEe---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEe
Confidence 36889988652 23589999999999999833999999999994 356688889999999987655 9999987
Q ss_pred C
Q psy12578 147 T 147 (172)
Q Consensus 147 ~ 147 (172)
.
T Consensus 320 ~ 320 (667)
T PRK11186 320 A 320 (667)
T ss_pred C
Confidence 4
No 26
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.74 E-value=1.4e-07 Score=59.84 Aligned_cols=58 Identities=26% Similarity=0.528 Sum_probs=49.5
Q ss_pred CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEECCc
Q psy12578 89 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYTPK 149 (172)
Q Consensus 89 ~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 149 (172)
++.|..|.++++|+.+| |++||.|++|||..+.+ +.++...+... +..+.+++.|++.
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECCE
Confidence 48899999999999999 99999999999999964 57787777765 4568999988764
No 27
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.63 E-value=3.6e-07 Score=59.29 Aligned_cols=59 Identities=31% Similarity=0.425 Sum_probs=49.9
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCc
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPK 149 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~ 149 (172)
.+++|..|.++++|+.+| |+.||+|++|||..+.+ ..++..++... +..+.+++.|++.
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 469999999999999999 99999999999999965 46677777664 5679999988774
No 28
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.62 E-value=1.7e-07 Score=75.59 Aligned_cols=72 Identities=32% Similarity=0.495 Sum_probs=60.0
Q ss_pred CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12578 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK 149 (172)
Q Consensus 74 ~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 149 (172)
.++|+.+... ..++.|..|.++|||+.+| |++||+|++|||.++.+++..++..+++. .+..+.+++.|.+.
T Consensus 51 ~~lG~~~~~~---~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 51 EGIGIQVGMD---DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred EEEEEEEEEE---CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 5688888642 2468999999999999999 99999999999999998877788777765 45569999988763
No 29
>KOG3605|consensus
Probab=98.60 E-value=6.6e-08 Score=81.79 Aligned_cols=89 Identities=30% Similarity=0.436 Sum_probs=72.2
Q ss_pred CCEEEEEec-CCCCCCeEEeccCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 63 HPRVVELPK-TDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 63 ~~~~v~l~~-~~~g~G~~l~~~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
..+.|.+.| .+..||+.|.- ... -..++|...+.+|||+++|.|..||+|++|||.++.+++.......||+.++
T Consensus 645 ~qKEVvv~K~kGEiLGVViVE-SGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~Kn 723 (829)
T KOG3605|consen 645 NQKEVVLEKHKGEILGVVIVE-SGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKN 723 (829)
T ss_pred ccceeeeecccCceeeEEEEe-cCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccc
Confidence 345677777 44678877753 111 1237788999999999999999999999999999999999999999999875
Q ss_pred e--EEEEEEECCchhH
Q psy12578 139 S--VKLVVRYTPKVLE 152 (172)
Q Consensus 139 ~--v~l~v~r~~~~~~ 152 (172)
. |+|+|.++|++.+
T Consensus 724 QT~VkltiV~cpPV~~ 739 (829)
T KOG3605|consen 724 QTAVKLNIVSCPPVTT 739 (829)
T ss_pred cceEEEEEecCCCceE
Confidence 4 9999999987654
No 30
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.59 E-value=4.6e-07 Score=57.70 Aligned_cols=58 Identities=24% Similarity=0.465 Sum_probs=48.6
Q ss_pred CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 89 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 89 ~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
|+.|..|.++++|+. | |++||.|++|||..+.+ ++++..++.. .+..+.+++.|++..
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~~ 68 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEKE 68 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 689999999999986 7 99999999999999964 5778877764 356799999988754
No 31
>KOG3580|consensus
Probab=98.54 E-value=4e-07 Score=76.75 Aligned_cols=89 Identities=24% Similarity=0.477 Sum_probs=70.4
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSV 140 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v 140 (172)
..+.|++. .+..+|+.+.||+ +.|+||..|..|+||+..| |+.||+|+.||.++..++..++++..|-.. |..|
T Consensus 407 ~tk~VrF~-KGdSvGLRLAGGN--DVGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEev 482 (1027)
T KOG3580|consen 407 NTKMVRFK-KGDSVGLRLAGGN--DVGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEV 482 (1027)
T ss_pred CceeEEee-cCCeeeeEeccCC--ceeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEE
Confidence 33555555 4457899999987 5679999999999999999 999999999999999999999999888775 3457
Q ss_pred EEEEEECCchhHHHH
Q psy12578 141 KLVVRYTPKVLEEME 155 (172)
Q Consensus 141 ~l~v~r~~~~~~~~~ 155 (172)
++.-.+.-.++-.++
T Consensus 483 tilaQ~k~Dvyr~iv 497 (1027)
T KOG3580|consen 483 TILAQSKADVYRDIV 497 (1027)
T ss_pred eehhhhhhHHHHHHH
Confidence 776655444444433
No 32
>KOG3938|consensus
Probab=98.50 E-value=3.7e-07 Score=69.85 Aligned_cols=126 Identities=24% Similarity=0.378 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCcccc-----------cccchhhhhhhhhhccCCCCCEEEEEecCCCCCCeEEeccCCCC
Q psy12578 19 FFNCVRDVYEHVYETVDIQGSPDVR-----------ASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQN 87 (172)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~g~G~~l~~~~~~~ 87 (172)
-|.++.|+|+.+.+....+..+..- ....-.....+|-........+.|+++|....||++|... ..
T Consensus 71 ~fsnv~ELY~kIAe~F~Is~~dIlfcTlNshKvDM~~llgGqigleDfiFAHvkGq~kEv~v~KsedalGlTITDN--G~ 148 (334)
T KOG3938|consen 71 GFSNVRELYQKIAEAFDISPDDILFCTLNSHKVDMKRLLGGQIGLEDFIFAHVKGQAKEVEVVKSEDALGLTITDN--GA 148 (334)
T ss_pred ccccHHHHHHHHHHHhcCCccceEEEecCCCcccHHHHhcCccChhhhhhhhhcCcceeEEEEecccccceEEeeC--Cc
Confidence 3567888998888777665554321 1111112233444444446778899999999999999752 13
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--CeEEEEEEE
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSVKLVVRY 146 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~--~~v~l~v~r 146 (172)
+..||..+.+||.-++--.+++||.|-+|||+++.++.|.++.++|+... ...+|.+..
T Consensus 149 GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLie 209 (334)
T KOG3938|consen 149 GYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIE 209 (334)
T ss_pred ceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeec
Confidence 45899999999998876669999999999999999999999999999864 456666543
No 33
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.40 E-value=1.4e-06 Score=67.77 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=55.6
Q ss_pred CCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12578 76 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 150 (172)
Q Consensus 76 ~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~ 150 (172)
+|+......+...|+.|..+.++++|+++| |+.||+|++|||.++.+. .++..++... +..+.++|.|++..
T Consensus 179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred EeEEEEEeCCceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 455543222223579999999999999999 999999999999999654 6777777663 35699999999854
No 34
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.30 E-value=2.7e-06 Score=70.83 Aligned_cols=60 Identities=27% Similarity=0.450 Sum_probs=50.4
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
.+++|..|.++|||+++| |+.||+|++|||..+.+ +.++...+.. .+..+.+++.|+++.
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~ 318 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISS--FADLRRAIGTLKPGKKVTLGILRKGKE 318 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 579999999999999999 99999999999999965 4666666654 456799999998754
No 35
>KOG3605|consensus
Probab=98.28 E-value=8.9e-07 Score=75.13 Aligned_cols=74 Identities=32% Similarity=0.583 Sum_probs=62.4
Q ss_pred CCCEEEEEecCC--CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 62 AHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 62 ~~~~~v~l~~~~--~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
....+|.|.|.. .-|||++..| +|.++..||.|++.| +++|.+|++|||++|....|+.++++|..+-+.
T Consensus 735 pPV~~V~I~RPd~kyQLGFSVQNG-------iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGE 806 (829)
T KOG3605|consen 735 PPVTTVLIRRPDLRYQLGFSVQNG-------IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGE 806 (829)
T ss_pred CCceEEEeecccchhhccceeeCc-------EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhhh
Confidence 344566777755 5799999874 678899999999988 999999999999999999999999999887666
Q ss_pred EEEE
Q psy12578 140 VKLV 143 (172)
Q Consensus 140 v~l~ 143 (172)
|.|+
T Consensus 807 IhMK 810 (829)
T KOG3605|consen 807 IHMK 810 (829)
T ss_pred hhhh
Confidence 6553
No 36
>PRK10139 serine endoprotease; Provisional
Probab=98.25 E-value=5e-06 Score=69.73 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=52.2
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 149 (172)
.+++|..|.+++||+++| |++||.|++|||+++.+ ++++..+++..+..+.|+|.|++.
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 468999999999999999 99999999999999954 588888888766779999999875
No 37
>PRK10942 serine endoprotease; Provisional
Probab=98.23 E-value=5.8e-06 Score=69.67 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=52.7
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 149 (172)
.+++|..|.++|+|+++| |++||+|++|||+++.+ .+++..+++..+..+.|+|.|++.
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 469999999999999999 99999999999999965 588888888877779999999874
No 38
>PRK10139 serine endoprotease; Provisional
Probab=98.21 E-value=9e-06 Score=68.21 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=51.7
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
..|++|..|.++|||+++| |+.||+|++|||+.+.+ +.++...+.. .++.+.++|.|+++.
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~V~R~G~~ 351 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGKP 351 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 3579999999999999999 99999999999999965 5787777765 466799999888753
No 39
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.17 E-value=8.4e-06 Score=67.78 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=50.8
Q ss_pred CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEECCch
Q psy12578 89 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYTPKV 150 (172)
Q Consensus 89 ~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~~ 150 (172)
++.|..|.++|||+.+| |++||+|++|||+++.+ .+++...++.. +..+.+++.|++..
T Consensus 204 g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred CcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCEE
Confidence 58899999999999999 99999999999999954 58888888764 45589999988753
No 40
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.17 E-value=9.6e-06 Score=67.54 Aligned_cols=60 Identities=27% Similarity=0.419 Sum_probs=52.3
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 150 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~ 150 (172)
.+++|..|.++|+|+++| |++||.|++|||+++.+ ..++.++++.. ++.+.|+|.|++..
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~~ 423 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGAT 423 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 579999999999999999 99999999999999964 57888888763 56799999998753
No 41
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.14 E-value=1e-05 Score=65.69 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=51.2
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
.+++|..|.+++||+.+| |++||+|++|||+.+.+ +.++...+.. .++.+.+++.|+++.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g~~ 339 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQGKQ 339 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 479999999999999999 99999999999999965 4777777764 466799999998754
No 42
>PRK10898 serine endoprotease; Provisional
Probab=98.10 E-value=1.8e-05 Score=64.43 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=50.0
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
.+++|..|.+++||+++| |+.||+|++|||+.+.+ ..+....+.. .+..+.+++.|+++.
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g~~ 340 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDKQ 340 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 579999999999999999 99999999999999965 4566665654 456799999998743
No 43
>PRK10942 serine endoprotease; Provisional
Probab=98.07 E-value=1.5e-05 Score=67.24 Aligned_cols=61 Identities=20% Similarity=0.339 Sum_probs=50.9
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 150 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~ 150 (172)
..|++|..|.+++||+++| |+.||+|++|||..+.+ ..++...+... +..+.++|.|+++.
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~G~~ 372 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGKP 372 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCeE
Confidence 3579999999999999999 99999999999999965 47777666543 56799999888753
No 44
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.06 E-value=2e-05 Score=66.02 Aligned_cols=59 Identities=19% Similarity=0.395 Sum_probs=50.1
Q ss_pred CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEECCch
Q psy12578 89 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYTPKV 150 (172)
Q Consensus 89 ~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~~ 150 (172)
++.|..|.++|||+.+| |++||+|++|||..+. +++++...++.. ++.+.+++.|++..
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~ 281 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGSP 281 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCEE
Confidence 47899999999999999 9999999999999995 457887777764 45689999988753
No 45
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.06 E-value=8.3e-06 Score=68.36 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=46.6
Q ss_pred eEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12578 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 149 (172)
Q Consensus 90 ~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 149 (172)
..|..|.++|||+++| |+.||+|++|||+.+.+. +++...+.. .+.++.+++.|+++
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk 186 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGS 186 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCc
Confidence 4789999999999999 999999999999999765 555544433 34569999999875
No 46
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.85 E-value=9.1e-05 Score=52.31 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=52.3
Q ss_pred CCEEEEEec-----CCCCCCeEEeccCCC---CCCeEEEeecCCChhhhcCCCCC-CCEEEEECCeeCCCCCHHHHHHHH
Q psy12578 63 HPRVVELPK-----TDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKR-GDQLLSVNGVSVEGEDHGKAVELL 133 (172)
Q Consensus 63 ~~~~v~l~~-----~~~g~G~~l~~~~~~---~~~~~V~~v~~g~~A~~~G~L~~-GD~I~~Vng~~v~~~~~~~~~~~l 133 (172)
..|.+.+.- +.+-+|++++-..-. ..++.|..|.++|||+.+| |.+ .|.|+.+++..+.+. +++...+
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v 86 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELV 86 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHHH
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHHH
Confidence 345555533 235689998753322 3468899999999999999 888 699999999888754 6777777
Q ss_pred HhCC-CeEEEEEEE
Q psy12578 134 KQAQ-RSVKLVVRY 146 (172)
Q Consensus 134 ~~~~-~~v~l~v~r 146 (172)
.... ..+.|.|..
T Consensus 87 ~~~~~~~l~L~Vyn 100 (138)
T PF04495_consen 87 EANENKPLQLYVYN 100 (138)
T ss_dssp HHTTTS-EEEEEEE
T ss_pred HHcCCCcEEEEEEE
Confidence 7654 458888853
No 47
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.84 E-value=0.00013 Score=59.95 Aligned_cols=69 Identities=16% Similarity=0.369 Sum_probs=52.1
Q ss_pred CCCCeEEeccCCCCCCeEEEeec--------CCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-CeEEEEE
Q psy12578 74 EGLGFNVMGGKEQNSPIYISRII--------PGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-RSVKLVV 144 (172)
Q Consensus 74 ~g~G~~l~~~~~~~~~~~V~~v~--------~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v 144 (172)
..+|+.+.. .|++|.... .++||+.+| |++||.|++|||.++.+ ++++..++...+ ..+.+++
T Consensus 96 ~~iGI~l~t-----~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~LtV 167 (402)
T TIGR02860 96 QSIGVKLNT-----KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAGGEKLTLTI 167 (402)
T ss_pred EEEEEEEec-----CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEEEEE
Confidence 446666643 357765432 258999999 99999999999999954 588888887764 5699999
Q ss_pred EECCch
Q psy12578 145 RYTPKV 150 (172)
Q Consensus 145 ~r~~~~ 150 (172)
.|++..
T Consensus 168 ~R~Ge~ 173 (402)
T TIGR02860 168 ERGGKI 173 (402)
T ss_pred EECCEE
Confidence 998753
No 48
>KOG0606|consensus
Probab=97.78 E-value=0.00014 Score=65.60 Aligned_cols=79 Identities=25% Similarity=0.353 Sum_probs=64.7
Q ss_pred EEEEecCCCCCCeEEec------cCCC-CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 66 VVELPKTDEGLGFNVMG------GKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 66 ~v~l~~~~~g~G~~l~~------~~~~-~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
.|.+++...+|||+++. ..+. ..-..|..|..|+||..+| ++.||.|..|||..+.++.|.++++++-+.+.
T Consensus 629 pI~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 629 PITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGN 707 (1205)
T ss_pred ceeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence 48888899999988753 2110 1124577899999999998 99999999999999999999999999998888
Q ss_pred eEEEEEE
Q psy12578 139 SVKLVVR 145 (172)
Q Consensus 139 ~v~l~v~ 145 (172)
.+.+.+.
T Consensus 708 ~v~~~tt 714 (1205)
T KOG0606|consen 708 KVTLRTT 714 (1205)
T ss_pred eeEEEee
Confidence 8777663
No 49
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.65 E-value=0.00012 Score=60.53 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=41.1
Q ss_pred EEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE-ECC
Q psy12578 92 ISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR-YTP 148 (172)
Q Consensus 92 V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~-r~~ 148 (172)
|..|.++|+|+.+| |++||+|++|||+.+.+ +.++...+. +..+.++|. +++
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~~rdG 54 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVLDANG 54 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEEcCCC
Confidence 56789999999999 99999999999999955 466665553 346888875 454
No 50
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.65 E-value=0.00016 Score=60.12 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=47.2
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 148 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 148 (172)
.+..|..|.++|||+++| |+.||+|++|||..+.+. .++...+....+++.+++.|+.
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~g 185 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAER 185 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEec
Confidence 457899999999999999 999999999999999654 6666666554467778887754
No 51
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.54 E-value=0.00078 Score=43.82 Aligned_cols=69 Identities=30% Similarity=0.497 Sum_probs=40.9
Q ss_pred CCeEEeccCCCCCCeEEEeecCC--------ChhhhcC-CCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEE
Q psy12578 76 LGFNVMGGKEQNSPIYISRIIPG--------GVADRHG-GLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVR 145 (172)
Q Consensus 76 ~G~~l~~~~~~~~~~~V~~v~~g--------~~A~~~G-~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~ 145 (172)
||.-+... ..++.|.++.+| ||....| .++.||.|++|||+++... .....+|.+. +..|.|+|.
T Consensus 3 LGAd~~~~---~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~ 77 (88)
T PF14685_consen 3 LGADFSYD---NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVN 77 (88)
T ss_dssp -SEEEEEE---TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE
T ss_pred cceEEEEc---CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEe
Confidence 45544432 345778888876 5555555 2569999999999999653 4456666654 556999998
Q ss_pred ECCc
Q psy12578 146 YTPK 149 (172)
Q Consensus 146 r~~~ 149 (172)
+.+.
T Consensus 78 ~~~~ 81 (88)
T PF14685_consen 78 RKPG 81 (88)
T ss_dssp -STT
T ss_pred cCCC
Confidence 8763
No 52
>KOG3129|consensus
Probab=97.39 E-value=0.00072 Score=50.41 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=44.4
Q ss_pred CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCC-HHHHHHHHHhC-CCeEEEEEEECCch
Q psy12578 89 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED-HGKAVELLKQA-QRSVKLVVRYTPKV 150 (172)
Q Consensus 89 ~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~-~~~~~~~l~~~-~~~v~l~v~r~~~~ 150 (172)
-++|..|.++|||+.+| |++||.|+.+....-.+.. ...+....+.. +..+.++|.|.+..
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 37889999999999999 9999999998776554433 34444444444 34588888777643
No 53
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0011 Score=53.79 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=49.7
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCchh
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKVL 151 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~~ 151 (172)
..|++|..+.+++||.++| ++.||.|+++||..+.+. .+....+.. .+..+.+++.|.++..
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~--~~l~~~v~~~~~g~~v~~~~~r~g~~~ 332 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASL--SDLVAAVASNRPGDEVALKLLRGGKER 332 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCH--HHHHHHHhccCCCCEEEEEEEECCEEE
Confidence 4468999999999999999 999999999999999654 555555443 3567999999986543
No 54
>KOG3532|consensus
Probab=97.11 E-value=0.0031 Score=54.62 Aligned_cols=70 Identities=19% Similarity=0.374 Sum_probs=55.0
Q ss_pred CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12578 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 148 (172)
Q Consensus 74 ~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 148 (172)
..+|+..... ....+.|..|.++++|.++. +++||++++|||.++. +..++.+.++...+.+...+.+.-
T Consensus 386 ~~ig~vf~~~--~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~~~ 455 (1051)
T KOG3532|consen 386 SPIGLVFDKN--TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVERSL 455 (1051)
T ss_pred CceeEEEecC--CceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEeecc
Confidence 4566665431 13457889999999999997 9999999999999995 458889999988778776666654
No 55
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.06 E-value=0.0017 Score=50.93 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=36.6
Q ss_pred hhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--CeEEEEEEECCchh
Q psy12578 102 DRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSVKLVVRYTPKVL 151 (172)
Q Consensus 102 ~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~--~~v~l~v~r~~~~~ 151 (172)
..+| |+.||.+++|||.++.+. .++.++++... ..++|+|.|++...
T Consensus 221 ~~~G-Lq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~~ 269 (276)
T PRK09681 221 DASG-FKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGARH 269 (276)
T ss_pred HHcC-CCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEEE
Confidence 4577 999999999999999765 55556665543 46999999998654
No 56
>KOG1738|consensus
Probab=97.02 E-value=0.0013 Score=56.21 Aligned_cols=76 Identities=25% Similarity=0.406 Sum_probs=63.4
Q ss_pred cCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12578 71 KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 148 (172)
Q Consensus 71 ~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 148 (172)
+...|+|+.|... .++.++|..+.+++||+....|..||.|+.||++.+.++.+.-+++.++...--|.++|+..+
T Consensus 210 kp~eglg~~I~Ss--ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp 285 (638)
T KOG1738|consen 210 SPSEGLGLYIDSS--YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRP 285 (638)
T ss_pred CcccCCceEEeee--cCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccC
Confidence 4557899998753 355689999999999999999999999999999999999999999988887655666665443
No 57
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.02 E-value=0.0025 Score=53.70 Aligned_cols=42 Identities=33% Similarity=0.596 Sum_probs=36.3
Q ss_pred CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCe
Q psy12578 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 119 (172)
Q Consensus 74 ~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~ 119 (172)
..+|+.+... .+...|..|.++|||..+| |.+||.|++|||.
T Consensus 451 ~~LGl~v~~~---~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 451 YYLGLKVKSE---GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred cccceEeccc---CCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 4688887542 4458899999999999999 9999999999999
No 58
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=96.70 E-value=0.0038 Score=37.00 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=30.1
Q ss_pred ChhcHHHHHHhhhhhHHHHHHHHHHHHHhhhccCCC
Q psy12578 4 PVTKLSALQKVLQSDFFNCVRDVYEHVYETVDIQGS 39 (172)
Q Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 39 (172)
+..+...|+++|++++|++++++|+.++.+...+..
T Consensus 19 ~~~~~~eL~~lL~~p~~~aLl~~hD~va~~~~~~~~ 54 (56)
T PF02828_consen 19 SQEDAQELQQLLQSPHFQALLEVHDKVAQKVYEPPS 54 (56)
T ss_dssp THHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTT---
T ss_pred ChHHHHHHHHHHcCHHHHHHHHHHHHHHhhcCCCCC
Confidence 457899999999999999999999999988876554
No 59
>KOG4407|consensus
Probab=96.39 E-value=0.0039 Score=57.38 Aligned_cols=54 Identities=30% Similarity=0.466 Sum_probs=45.1
Q ss_pred eEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12578 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144 (172)
Q Consensus 90 ~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v 144 (172)
+||..|++.++|..+. |+-||.++.||..++.++...+++.++++..-.+++.|
T Consensus 145 ~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~ 198 (1973)
T KOG4407|consen 145 IFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHV 198 (1973)
T ss_pred hhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCcee
Confidence 5777889999999886 99999999999999999999999999988765555544
No 60
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.32 E-value=0.019 Score=45.66 Aligned_cols=56 Identities=16% Similarity=0.352 Sum_probs=46.8
Q ss_pred CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECC
Q psy12578 89 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTP 148 (172)
Q Consensus 89 ~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~ 148 (172)
|+++..+..++++. |.|+.||.|++|||+++.+ .++....+++. |+.|++.++|..
T Consensus 131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred eEEEEEccCCcchh--ceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEecc
Confidence 58999999999987 4599999999999999954 58888877654 788999998743
No 61
>KOG1320|consensus
Probab=96.26 E-value=0.017 Score=48.61 Aligned_cols=58 Identities=29% Similarity=0.539 Sum_probs=47.8
Q ss_pred CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--CeEEEEEEECCc
Q psy12578 89 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSVKLVVRYTPK 149 (172)
Q Consensus 89 ~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~--~~v~l~v~r~~~ 149 (172)
++.|..|.+++++...+ +..||+|++|||+.+.+. .++..++..+. +.|.+..++..+
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~~e 458 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRSAE 458 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecCcc
Confidence 58899999999999988 999999999999999776 77778887764 467776666543
No 62
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=96.07 E-value=0.041 Score=42.12 Aligned_cols=69 Identities=23% Similarity=0.385 Sum_probs=47.4
Q ss_pred EEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--CeEEEEE
Q psy12578 67 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSVKLVV 144 (172)
Q Consensus 67 v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~--~~v~l~v 144 (172)
..+.+++.-+|+.+..+++ ++.=...| |+.||..++||+.++++ .+++..+++... ..+.|+|
T Consensus 198 tpv~r~eki~Gyr~~pgkd------------~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~qlTv 262 (275)
T COG3031 198 TPVIRNEKIEGYRFEPGKD------------GSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQLTV 262 (275)
T ss_pred eeEeeCCceEEEEecCCCC------------cchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEEEE
Confidence 3344455556776665442 34445577 99999999999999954 466666666543 3599999
Q ss_pred EECCch
Q psy12578 145 RYTPKV 150 (172)
Q Consensus 145 ~r~~~~ 150 (172)
.|++..
T Consensus 263 ~R~G~r 268 (275)
T COG3031 263 IRRGKR 268 (275)
T ss_pred EecCcc
Confidence 998853
No 63
>KOG1421|consensus
Probab=95.99 E-value=0.014 Score=50.73 Aligned_cols=58 Identities=22% Similarity=0.482 Sum_probs=46.0
Q ss_pred eEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCchh
Q psy12578 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPKVL 151 (172)
Q Consensus 90 ~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~~~ 151 (172)
+.|..|.++|+|+.. |++||.+++||+..+.+ ...+.+++-. .+..+.|+|.|.+...
T Consensus 305 LvV~~vL~~gpa~k~--Le~GDillavN~t~l~d--f~~l~~iLDegvgk~l~LtI~Rggqel 363 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK--LEPGDILLAVNSTCLND--FEALEQILDEGVGKNLELTIQRGGQEL 363 (955)
T ss_pred EEEEEeccCCchhhc--cCCCcEEEEEcceehHH--HHHHHHHHhhccCceEEEEEEeCCEEE
Confidence 667899999999986 99999999999887744 3555566543 4667999999988643
No 64
>PF12812 PDZ_1: PDZ-like domain
Probab=95.21 E-value=0.071 Score=33.82 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=37.2
Q ss_pred eEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 90 ~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
.++.....|+++...| +..|-.|.+||++++.++ ++..+.+++.++
T Consensus 32 gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ipd 77 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPDL--DDFIKVVKKIPD 77 (78)
T ss_pred EEEEEecCCChhhhCC-CCCCeEEEeECCcCCcCH--HHHHHHHHhCCC
Confidence 4555667788888766 999999999999999765 888888887654
No 65
>KOG3834|consensus
Probab=93.58 E-value=0.19 Score=41.65 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=46.0
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 145 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~ 145 (172)
.+..|.+|..+++|.++|..---|.|++|||..+. ...+.+..+++.....|+|+|.
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~-~dnd~Lk~llk~~sekVkltv~ 71 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN-KDNDTLKALLKANSEKVKLTVY 71 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCccccc-CchHHHHHHHHhcccceEEEEE
Confidence 46788999999999999955568999999999994 4566777777776556888874
No 66
>KOG4371|consensus
Probab=93.24 E-value=0.16 Score=46.44 Aligned_cols=84 Identities=27% Similarity=0.429 Sum_probs=60.9
Q ss_pred EEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12578 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144 (172)
Q Consensus 65 ~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v 144 (172)
..+.+.+..+.+|..+..- ...+.++...-.+.-.+- .|.+||.+..+||+.+.+.-|.+++.++++.++.|.|.|
T Consensus 1149 i~~~~~r~~~~l~~~~a~~---~~~~~~~~~~~~~~~~~p-d~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1224 (1332)
T KOG4371|consen 1149 IDVELDRNEGSLGVQIASL---SGRVCIKQLTSEPAISHP-DIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGV 1224 (1332)
T ss_pred ccccCCCCCCCCCceeccC---ccceehhhcccCCCCCCC-CcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEe
Confidence 3345566667788877642 122344444333333334 399999999999999999999999999999999999999
Q ss_pred EECCchhH
Q psy12578 145 RYTPKVLE 152 (172)
Q Consensus 145 ~r~~~~~~ 152 (172)
.|.+..+.
T Consensus 1225 ~r~~~~~~ 1232 (1332)
T KOG4371|consen 1225 QRPPPAYS 1232 (1332)
T ss_pred ecCCcccc
Confidence 99876543
No 67
>smart00569 L27 domain in receptor targeting proteins Lin-2 and Lin-7.
Probab=92.86 E-value=0.27 Score=28.46 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=27.1
Q ss_pred hcHHHHHHhhhhhHHHHHHHHHHHHHhhhcc
Q psy12578 6 TKLSALQKVLQSDFFNCVRDVYEHVYETVDI 36 (172)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 36 (172)
+++..|+++|++++|++++++|+.+..+...
T Consensus 20 ~~~~~L~~ll~~~~~~all~~hd~v~~~~~~ 50 (55)
T smart00569 20 EDLQELRRLLQSPHLQALLKIHDKVAETVYD 50 (55)
T ss_pred ccHHHHHHHHcCHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999988866653
No 68
>KOG4371|consensus
Probab=89.65 E-value=0.64 Score=42.70 Aligned_cols=81 Identities=30% Similarity=0.413 Sum_probs=61.0
Q ss_pred EEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12578 65 RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 143 (172)
Q Consensus 65 ~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 143 (172)
..+.+.+.+ .++|+.+... ....++++..+..++.|.-.|.+++||+++..+|.++.+.+......-++-.-+.+.++
T Consensus 1247 ~~~~~~~~p~~~~~~~~~~~-~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~ 1325 (1332)
T KOG4371|consen 1247 ISVMLLKKPMATLGLSLAKR-TMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQIT 1325 (1332)
T ss_pred hhheeeeccccccccccccc-CcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhhe
Confidence 344454444 7888887652 23557999988888888888899999999999999999987777766666555666666
Q ss_pred EEE
Q psy12578 144 VRY 146 (172)
Q Consensus 144 v~r 146 (172)
+.+
T Consensus 1326 ~~~ 1328 (1332)
T KOG4371|consen 1326 VTR 1328 (1332)
T ss_pred ehh
Confidence 644
No 69
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=88.98 E-value=0.79 Score=27.15 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=22.6
Q ss_pred ChhcHHHHHHhhhhhHHHHHHHHHHHHH
Q psy12578 4 PVTKLSALQKVLQSDFFNCVRDVYEHVY 31 (172)
Q Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 31 (172)
+.++++.++.+|+||+|..++.+...+.
T Consensus 24 ~~e~L~~l~~~LqSPLF~~iL~LQqSi~ 51 (58)
T PF09045_consen 24 HSEKLSLLKDTLQSPLFNQILTLQQSIK 51 (58)
T ss_dssp THHHHHHHHHHHH-HHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 3569999999999999999888876553
No 70
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=86.09 E-value=3.6 Score=33.50 Aligned_cols=53 Identities=25% Similarity=0.398 Sum_probs=40.0
Q ss_pred EEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCe---EEEEEEE
Q psy12578 91 YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRS---VKLVVRY 146 (172)
Q Consensus 91 ~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~---v~l~v~r 146 (172)
.+..+...++|..+| ++.||.++++|+..+.++ +++...+.. .+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASW--DDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCH--HHHHHHHHhccCCcccceEEEEEe
Confidence 344688899999999 999999999999999654 665555544 2333 5777777
No 71
>KOG3834|consensus
Probab=84.35 E-value=5.4 Score=33.34 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=52.2
Q ss_pred CCCEEEEEecCC-CC---CCeEEeccCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12578 62 AHPRVVELPKTD-EG---LGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 134 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g---~G~~l~~~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~ 134 (172)
...|.+.+...+ -| ||++|+=.... ..-..|-+|.+.+||+++|...-+|.|+-+- +......++...+|.
T Consensus 76 ~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~--~~~~~~~eDl~~lIe 153 (462)
T KOG3834|consen 76 QEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIW--DAVMHEEEDLFTLIE 153 (462)
T ss_pred ceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecch--hhhccchHHHHHHHH
Confidence 355667776544 45 88888643221 1236688999999999999444899998662 222234577777776
Q ss_pred hCC-CeEEEEE
Q psy12578 135 QAQ-RSVKLVV 144 (172)
Q Consensus 135 ~~~-~~v~l~v 144 (172)
... +.+.|.|
T Consensus 154 she~kpLklyV 164 (462)
T KOG3834|consen 154 SHEGKPLKLYV 164 (462)
T ss_pred hccCCCcceeE
Confidence 654 4477766
No 72
>PF09058 L27_1: L27_1; InterPro: IPR015143 The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices []. ; PDB: 3LRA_A 1RSO_A.
Probab=82.02 E-value=1.1 Score=27.23 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.1
Q ss_pred hcHHHHHHhhhhhHHHHHHHHHH
Q psy12578 6 TKLSALQKVLQSDFFNCVRDVYE 28 (172)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~ 28 (172)
..++.+..+|+|.+|++++++++
T Consensus 32 ~~ierli~ifkS~LF~ALLDIqe 54 (64)
T PF09058_consen 32 TAIERLINIFKSRLFQALLDIQE 54 (64)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999874
No 73
>KOG1421|consensus
Probab=81.09 E-value=4.5 Score=35.94 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=42.3
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
..|+||.....||||.. + |..-..|.+|||+...+ .++.+.+++...+.
T Consensus 861 p~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~~--lddf~~~~~~ipdn 909 (955)
T KOG1421|consen 861 PEGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTNT--LDDFYHMLLEIPDN 909 (955)
T ss_pred CCceEEeecccCChhHh-h-cchheeEEEecccccCc--HHHHHHHHhhCCCC
Confidence 45799999999999998 6 99999999999999854 58999998877543
No 74
>KOG0792|consensus
Probab=80.92 E-value=0.82 Score=42.05 Aligned_cols=64 Identities=36% Similarity=0.657 Sum_probs=52.0
Q ss_pred CCCCeEEeccCCCC-----CCeEEEeec-------------CCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12578 74 EGLGFNVMGGKEQN-----SPIYISRII-------------PGGVADR-HGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 134 (172)
Q Consensus 74 ~g~G~~l~~~~~~~-----~~~~V~~v~-------------~g~~A~~-~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~ 134 (172)
+-+||.+.|+.+.. .+..+.++. ++++|+. .-++..||+++.|||.++....|+.++.+|+
T Consensus 716 g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ir 795 (1144)
T KOG0792|consen 716 GRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLIR 795 (1144)
T ss_pred ccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHHh
Confidence 56999999988765 567777787 7777643 3357889999999999999999999999998
Q ss_pred hCC
Q psy12578 135 QAQ 137 (172)
Q Consensus 135 ~~~ 137 (172)
...
T Consensus 796 s~r 798 (1144)
T KOG0792|consen 796 SPR 798 (1144)
T ss_pred hhh
Confidence 763
No 75
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=78.17 E-value=4.8 Score=29.81 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEEC
Q psy12578 75 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVN 117 (172)
Q Consensus 75 g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vn 117 (172)
..|+.+... +..+.|..|..||+|+++| +.-+..|++|-
T Consensus 112 ~~GL~l~~e---~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 112 AAGLTLMEE---GGKVIVDEVEFGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred hCCCEEEee---CCEEEEEecCCCCHHHHcC-CCCCcEEEEEE
Confidence 368887652 3458999999999999999 99999998763
No 76
>KOG2921|consensus
Probab=67.01 E-value=7.8 Score=32.20 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=29.9
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCC
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 123 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~ 123 (172)
+.++.|..|...||+..-..|.+||.|.++||.+|.+
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~ 255 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK 255 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCC
Confidence 4568888998888875433399999999999999965
No 77
>KOG1703|consensus
Probab=56.19 E-value=4.9 Score=34.27 Aligned_cols=71 Identities=28% Similarity=0.468 Sum_probs=58.2
Q ss_pred CCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEEC
Q psy12578 75 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 147 (172)
Q Consensus 75 g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 147 (172)
.|||.+.++ +...++.+..+.+++.+..+. +..+|.+..+++..-..+.|.++..-.+..+....+.+.|.
T Consensus 9 ~~~~r~~~~-~~~~~l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 79 (479)
T KOG1703|consen 9 PWGFRLQGG-DFLQPLRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRS 79 (479)
T ss_pred Cceeeeccc-ccccccceeccCCCCcccccc-ccccccccccccccccccccccccCcccccccccccccccc
Confidence 566665554 445568889999999999887 99999999999998888999998888878877788887664
No 78
>PRK15464 cold shock-like protein CspH; Provisional
Probab=53.21 E-value=25 Score=21.64 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=25.9
Q ss_pred EEEEecCCCCCCeEEeccCCCCCCeEEE--eecCCChhhhcCCCCCCCEEEE
Q psy12578 66 VVELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 66 ~v~l~~~~~g~G~~l~~~~~~~~~~~V~--~v~~g~~A~~~G~L~~GD~I~~ 115 (172)
+|.......||||...... ..-+||. .+...+ .. .|..||.|.-
T Consensus 8 ~Vk~fn~~KGfGFI~~~~g--~~DvFvH~s~l~~~g---~~-~l~~G~~V~f 53 (70)
T PRK15464 8 IVKTFDRKSGKGFIIPSDG--RKEVQVHISAFTPRD---AE-VLIPGLRVEF 53 (70)
T ss_pred EEEEEECCCCeEEEccCCC--CccEEEEehhehhcC---CC-CCCCCCEEEE
Confidence 4666667799999765421 2236654 443322 12 2888998764
No 79
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=51.94 E-value=41 Score=24.90 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=32.5
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 105 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 105 G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
|.+..||.++-|++.-.++-+...+.++++..|..+
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V 152 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYI 152 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEE
Confidence 458899999999999999999999999999998763
No 80
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=49.99 E-value=47 Score=20.63 Aligned_cols=44 Identities=25% Similarity=0.362 Sum_probs=26.0
Q ss_pred EEEEecCCCCCCeEEeccCCCCCCeEEE--eecCCChhhhcCCCCCCCEEEE
Q psy12578 66 VVELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 66 ~v~l~~~~~g~G~~l~~~~~~~~~~~V~--~v~~g~~A~~~G~L~~GD~I~~ 115 (172)
+|.......||||...... ..-+||. .+...+ .. .|+.|+.|.-
T Consensus 5 ~Vkwfn~~KGfGFI~~~~g--g~dVFvH~s~i~~~g---~~-~l~~G~~V~f 50 (74)
T PRK09937 5 TVKWFNNAKGFGFICPEGG--GEDIFAHYSTIQMDG---YR-TLKAGQSVQF 50 (74)
T ss_pred EEEEEeCCCCeEEEeeCCC--CccEEEEEeeccccC---CC-CCCCCCEEEE
Confidence 4666667799999865422 2235654 443322 12 3888998763
No 81
>KOG0572|consensus
Probab=46.16 E-value=48 Score=27.71 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=35.2
Q ss_pred CCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EEEEEEECC
Q psy12578 108 KRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VKLVVRYTP 148 (172)
Q Consensus 108 ~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~-v~l~v~r~~ 148 (172)
-.|-+|+-|++.-|.+.+...++++++.+|-+ |.+.+...|
T Consensus 354 ~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAsPp 395 (474)
T KOG0572|consen 354 FEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPP 395 (474)
T ss_pred cCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEecCCc
Confidence 35889999999999999999999999999865 988886443
No 82
>KOG0708|consensus
Probab=45.53 E-value=25 Score=28.88 Aligned_cols=48 Identities=29% Similarity=0.467 Sum_probs=38.7
Q ss_pred EECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCchhHHHHHHhhhcc
Q psy12578 115 SVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQR 162 (172)
Q Consensus 115 ~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~~~~~~~~ 162 (172)
.+||.+..+.+|.++...++..++++.+++...++.+...+....+.+
T Consensus 2 ~~~~~~~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~~~~~e~~i~~~~ 49 (359)
T KOG0708|consen 2 SVNGVDGRNATHEDAAAALKTSGDSVYIRAQYRPEEYDKFELKIHDLE 49 (359)
T ss_pred cccccccccchHHHHHHHhhcCCCceEEEEEechhhhchhhcccCCcc
Confidence 467888888999999999999999999999988877666555544443
No 83
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=43.15 E-value=16 Score=29.55 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=27.5
Q ss_pred eEEEeecCCChhhhcCCCCCCCEEEEECCeeC
Q psy12578 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 121 (172)
Q Consensus 90 ~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v 121 (172)
+-+.+|.+-++|..+| +-.||.|+-+|+-++
T Consensus 65 l~~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~ 95 (417)
T COG5233 65 LEVLRVNPESPAEKAG-MVVGDYILGINEDPL 95 (417)
T ss_pred hhheeccccChhHhhc-cccceeEEeecCCcH
Confidence 5677889999999999 999999999998665
No 84
>COG1278 CspC Cold shock proteins [Transcription]
Probab=42.60 E-value=64 Score=19.78 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=24.9
Q ss_pred EEEEecCCCCCCeEEeccCCCCCCeEE--EeecCCChhhhcCCCCCCCEEEE
Q psy12578 66 VVELPKTDEGLGFNVMGGKEQNSPIYI--SRIIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 66 ~v~l~~~~~g~G~~l~~~~~~~~~~~V--~~v~~g~~A~~~G~L~~GD~I~~ 115 (172)
+|.......|+||.....- ..-+|| +.|...+.. .|..|+.+.-
T Consensus 5 tVKwfn~~KGfGFI~p~~G--~~DvFVH~Sai~~~g~~----~L~eGQ~V~f 50 (67)
T COG1278 5 TVKWFNATKGFGFITPEDG--GKDVFVHISAIQRAGFR----TLREGQKVEF 50 (67)
T ss_pred eEEEeeCCCcceEcCCCCC--CcCEEEEeeeeccCCCc----ccCCCCEEEE
Confidence 4555666789999775421 123555 455433322 2777887753
No 85
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=41.99 E-value=80 Score=19.20 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=24.1
Q ss_pred EEEecCCCCCCeEEeccCCCCCCeEE--EeecCCChhhhcCCCCCCCEEEE
Q psy12578 67 VELPKTDEGLGFNVMGGKEQNSPIYI--SRIIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 67 v~l~~~~~g~G~~l~~~~~~~~~~~V--~~v~~g~~A~~~G~L~~GD~I~~ 115 (172)
|.......||||.-.... ..-+|+ +.+...+ .. .|..||.|.-
T Consensus 9 Vk~f~~~kGfGFI~~~~g--~~dvfvH~s~l~~~g---~~-~l~~G~~V~f 53 (70)
T PRK10354 9 VKWFNADKGFGFITPDDG--SKDVFVHFSAIQNDG---YK-SLDEGQKVSF 53 (70)
T ss_pred EEEEeCCCCcEEEecCCC--CccEEEEEeeccccC---CC-CCCCCCEEEE
Confidence 445556689999664421 123555 4443322 12 3888998764
No 86
>PRK15463 cold shock-like protein CspF; Provisional
Probab=40.93 E-value=41 Score=20.59 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=25.8
Q ss_pred EEEEecCCCCCCeEEeccCCCCCCeEEE--eecCCChhhhcCCCCCCCEEEE
Q psy12578 66 VVELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 66 ~v~l~~~~~g~G~~l~~~~~~~~~~~V~--~v~~g~~A~~~G~L~~GD~I~~ 115 (172)
+|.......||||.-.... ..-+||. .+...+ . ..|..|+.|.-
T Consensus 8 ~Vk~fn~~kGfGFI~~~~g--~~DvFvH~sal~~~g---~-~~l~~G~~V~f 53 (70)
T PRK15463 8 IVKTFDGKSGKGLITPSDG--RKDVQVHISALNLRD---A-EELTTGLRVEF 53 (70)
T ss_pred EEEEEeCCCceEEEecCCC--CccEEEEehhhhhcC---C-CCCCCCCEEEE
Confidence 4566667799999876422 2236654 333222 1 23888888764
No 87
>PRK09890 cold shock protein CspG; Provisional
Probab=39.79 E-value=88 Score=19.05 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=25.3
Q ss_pred EEEEecCCCCCCeEEeccCCCCCCeEE--EeecCCChhhhcCCCCCCCEEEE
Q psy12578 66 VVELPKTDEGLGFNVMGGKEQNSPIYI--SRIIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 66 ~v~l~~~~~g~G~~l~~~~~~~~~~~V--~~v~~g~~A~~~G~L~~GD~I~~ 115 (172)
+|.......|+||.-.... ..-+|+ +.+...+ .. .|..||.|.-
T Consensus 8 ~Vk~f~~~kGfGFI~~~~g--~~dvFvH~s~l~~~~---~~-~l~~G~~V~f 53 (70)
T PRK09890 8 LVKWFNADKGFGFITPDDG--SKDVFVHFTAIQSNE---FR-TLNENQKVEF 53 (70)
T ss_pred EEEEEECCCCcEEEecCCC--CceEEEEEeeeccCC---CC-CCCCCCEEEE
Confidence 3555556799999876422 122554 4444332 11 3888888764
No 88
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=38.29 E-value=85 Score=23.64 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=31.3
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 106 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 106 ~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
....|++++-|++.-.++.+..+++..++..|..|
T Consensus 108 ~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V 142 (201)
T COG0461 108 GEVKGEKVVVVEDVITTGGSILEAVEALREAGAEV 142 (201)
T ss_pred cCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeE
Confidence 35689999999999999999999999999998774
No 89
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=38.01 E-value=76 Score=23.52 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=31.4
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 107 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 107 L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
+..||+++-|++.-.++-+...+.+++++.|..+
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~V 147 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKI 147 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEE
Confidence 7799999999999999999999999999998763
No 90
>PRK14998 cold shock-like protein CspD; Provisional
Probab=36.53 E-value=1e+02 Score=18.97 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=25.4
Q ss_pred EEEEecCCCCCCeEEeccCCCCCCeEEE--eecCCChhhhcCCCCCCCEEEE
Q psy12578 66 VVELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 66 ~v~l~~~~~g~G~~l~~~~~~~~~~~V~--~v~~g~~A~~~G~L~~GD~I~~ 115 (172)
+|.......||||...... ..-+|+. .+...+ .. .|..|+.|.-
T Consensus 5 ~Vkwfn~~kGfGFI~~~~g--~~dVFvH~s~l~~~g---~~-~l~~G~~V~f 50 (73)
T PRK14998 5 TVKWFNNAKGFGFICPEGG--GEDIFAHYSTIQMDG---YR-TLKAGQSVRF 50 (73)
T ss_pred EEEEEeCCCceEEEecCCC--CccEEEEeeeecccC---CC-CCCCCCEEEE
Confidence 4555667799999876422 2235554 443322 12 3888888764
No 91
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=36.37 E-value=57 Score=24.18 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=31.9
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 106 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 106 ~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
.+..|+.++-|++.--++-+...+.+++++.|..+
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~v 147 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKV 147 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEE
Confidence 38899999999999999999999999999998763
No 92
>KOG4407|consensus
Probab=35.77 E-value=22 Score=34.25 Aligned_cols=84 Identities=10% Similarity=0.071 Sum_probs=58.6
Q ss_pred cCCCCCEEEEEecCCCCCCeEEeccCCC-------------------------CCCeEEEeecCCChhhhcCCCCCCCEE
Q psy12578 59 EGHAHPRVVELPKTDEGLGFNVMGGKEQ-------------------------NSPIYISRIIPGGVADRHGGLKRGDQL 113 (172)
Q Consensus 59 ~~~~~~~~v~l~~~~~g~G~~l~~~~~~-------------------------~~~~~V~~v~~g~~A~~~G~L~~GD~I 113 (172)
..+..+.+|.+.+.+.||||+++-..-+ ..-+++..+..++++..+| +..+|.|
T Consensus 42 ~S~~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v 120 (1973)
T KOG4407|consen 42 SSIQPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGV 120 (1973)
T ss_pred ccCCCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccce
Confidence 4466778888899999999999743210 0125677788889999999 9999999
Q ss_pred EEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12578 114 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144 (172)
Q Consensus 114 ~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v 144 (172)
+.|||..+.+.+ ....-+++.....+.+.|
T Consensus 121 ~~itG~e~~~~T-S~~~~~vk~~eT~~~~eV 150 (1973)
T KOG4407|consen 121 AGITGLEPTSPT-SLPPYQVKAMETIFIKEV 150 (1973)
T ss_pred eeecccccCCCc-cccHHHHhhhhhhhhhhh
Confidence 999999887755 333334444333333333
No 93
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=35.44 E-value=92 Score=26.57 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=34.7
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EEEEEEE
Q psy12578 107 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VKLVVRY 146 (172)
Q Consensus 107 L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~-v~l~v~r 146 (172)
.-.|-+|+-|++.-|.+.+...++++++.+|-+ |.+.+..
T Consensus 345 ~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 345 VVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred HhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 345899999999999999999999999999855 8888753
No 94
>PRK10943 cold shock-like protein CspC; Provisional
Probab=34.74 E-value=59 Score=19.77 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=25.0
Q ss_pred EEEEecCCCCCCeEEeccCCCCCCeEEE--eecCCChhhhcCCCCCCCEEEE
Q psy12578 66 VVELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 66 ~v~l~~~~~g~G~~l~~~~~~~~~~~V~--~v~~g~~A~~~G~L~~GD~I~~ 115 (172)
+|.......||||.-.... ..-+|+. .+...+ .. .|..||.|.-
T Consensus 7 ~Vk~f~~~kGfGFI~~~~g--~~dvFvH~s~l~~~g---~~-~l~~G~~V~f 52 (69)
T PRK10943 7 QVKWFNESKGFGFITPADG--SKDVFVHFSAIQGNG---FK-TLAEGQNVEF 52 (69)
T ss_pred EEEEEeCCCCcEEEecCCC--CeeEEEEhhHccccC---CC-CCCCCCEEEE
Confidence 3555667799999876421 1236654 333221 12 3888888764
No 95
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=34.60 E-value=89 Score=26.85 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=33.2
Q ss_pred cCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 104 HGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 104 ~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
.|.+..||.++-|++.-.++.+..+++.+++..|..|
T Consensus 387 eG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V 423 (477)
T PRK05500 387 EGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNV 423 (477)
T ss_pred ecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEE
Confidence 4568899999999999999999999999999988764
No 96
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=34.30 E-value=1e+02 Score=22.42 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 105 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 105 G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
|.+..|+.++-|++.--++-+...++++++..|..
T Consensus 102 g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~ 136 (176)
T PRK13812 102 GRLDEGEEVVVLEDIATTGQSAVDAVEALREAGAT 136 (176)
T ss_pred ecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCe
Confidence 34779999999999999999999999999999865
No 97
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=32.96 E-value=1.1e+02 Score=18.48 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=24.3
Q ss_pred EEEEecCCCCCCeEEeccCCCCCCeEEE--eecCCChhhhcCCCCCCCEEEE
Q psy12578 66 VVELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 66 ~v~l~~~~~g~G~~l~~~~~~~~~~~V~--~v~~g~~A~~~G~L~~GD~I~~ 115 (172)
+|.......||||.-.... ..-+|+. .+...+ .. .|..||.|.-
T Consensus 7 ~Vk~f~~~kGyGFI~~~~g--~~dvfvH~s~l~~~g---~~-~l~~G~~V~f 52 (69)
T PRK09507 7 NVKWFNESKGFGFITPEDG--SKDVFVHFSAIQTNG---FK-TLAEGQRVEF 52 (69)
T ss_pred EEEEEeCCCCcEEEecCCC--CeeEEEEeecccccC---CC-CCCCCCEEEE
Confidence 3555666799999664321 1236654 333221 11 3888888764
No 98
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=32.30 E-value=1.1e+02 Score=22.90 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=30.9
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 106 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 106 ~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
.+..|+.++-|++.-.++.+..++.+++++.|..
T Consensus 114 ~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~ 147 (206)
T PRK13809 114 LFTPGQTCLVINDMVSSGKSIIETAVALEEEGLV 147 (206)
T ss_pred ccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 3678999999999999999999999999999866
No 99
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=31.79 E-value=43 Score=22.47 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=23.0
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 106 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 106 ~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
++++|+.|+++.+.+. .+.+...++.....+
T Consensus 75 ~v~~G~iifEi~~~~~----~~~~~~alk~a~~Kl 105 (112)
T cd01433 75 RVKPGQILFEVRGVPE----EEVAKEALRRAAKKL 105 (112)
T ss_pred EECCCCEEEEEeCcCc----HHHHHHHHHHhhccC
Confidence 4888999999998775 467777777665443
No 100
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=30.87 E-value=68 Score=27.48 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=33.9
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EEEEEEE
Q psy12578 107 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VKLVVRY 146 (172)
Q Consensus 107 L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~-v~l~v~r 146 (172)
...|..|+-|++.-+++.|...+.++|+..|-. |.+.+..
T Consensus 353 ~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~s 393 (474)
T PRK06388 353 VISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGS 393 (474)
T ss_pred cccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 446889999999999999999999999998754 7887743
No 101
>PLN02293 adenine phosphoribosyltransferase
Probab=30.19 E-value=1.3e+02 Score=22.24 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 105 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 105 G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
|.+..|+.++-|++.--++-+...+.++++..|..
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~ 154 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERAGAE 154 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHCCCE
Confidence 34789999999999999999999999999999876
No 102
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=29.56 E-value=1.2e+02 Score=21.82 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.9
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 106 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 106 ~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
.+..|+.++-|++.--++.+...+.++++..|..
T Consensus 104 ~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~ 137 (173)
T TIGR00336 104 ELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQ 137 (173)
T ss_pred CCCCCCEEEEEeccccChHHHHHHHHHHHHcCCe
Confidence 3778999999999999999999999999998866
No 103
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=29.47 E-value=1.1e+02 Score=22.45 Aligned_cols=35 Identities=37% Similarity=0.487 Sum_probs=31.8
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 106 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 106 ~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
.+..||.++-|++.--++-+...+.+++.+.+..+
T Consensus 112 ~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~v 146 (179)
T COG0503 112 ALKPGDRVLIVDDLLATGGTALALIELLEQAGAEV 146 (179)
T ss_pred hCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEE
Confidence 38899999999999999999999999999998763
No 104
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=29.29 E-value=52 Score=23.14 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 106 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 106 ~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
++.+|+.|+++.+ .+.+.+..+++.+..
T Consensus 96 rVk~G~iifEi~~-----~~~~~a~~al~~a~~ 123 (138)
T PRK09203 96 VVKPGRILFEIAG-----VSEELAREALRLAAA 123 (138)
T ss_pred EECCCCEEEEEeC-----CCHHHHHHHHHHHhc
Confidence 4899999999988 345777788877643
No 105
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=28.83 E-value=1.1e+02 Score=26.19 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=33.7
Q ss_pred CCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EEEEEEEC
Q psy12578 108 KRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VKLVVRYT 147 (172)
Q Consensus 108 ~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~-v~l~v~r~ 147 (172)
-.|-.|+-|++.-+++.|...+.++|+..|-. |.+.+...
T Consensus 346 i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sP 386 (471)
T PRK06781 346 VEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASP 386 (471)
T ss_pred cCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCC
Confidence 35788999999999999999999999998754 88877533
No 106
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=28.50 E-value=1.3e+02 Score=20.97 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=34.5
Q ss_pred EEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe--EEEEE
Q psy12578 91 YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS--VKLVV 144 (172)
Q Consensus 91 ~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~--v~l~v 144 (172)
-+..|..|.++...- -+.|++|+.++|-++ .-+..-|...|-. +.|+|
T Consensus 49 C~agvg~gv~~l~~~-arsgrrIlalDGCp~-----~Catk~l~~AGv~~D~~l~i 98 (135)
T COG4273 49 CTAGVGAGVPALVDA-ARSGRRILALDGCPL-----RCATKCLAEAGVQADVHLTI 98 (135)
T ss_pred eeecccCCcHHHHHH-hhcCCceEEecCChH-----HHHHHHHHHhccceeEEEEe
Confidence 345677788877765 889999999998766 5566666666644 56665
No 107
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=28.05 E-value=55 Score=27.44 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=27.4
Q ss_pred EEEeecCCChhhhcCCCCCCCEEEEEC-CeeCCCC
Q psy12578 91 YISRIIPGGVADRHGGLKRGDQLLSVN-GVSVEGE 124 (172)
Q Consensus 91 ~V~~v~~g~~A~~~G~L~~GD~I~~Vn-g~~v~~~ 124 (172)
.|..+.+++.++..| .+.||.+..|| +..+..+
T Consensus 4 ~i~~v~~~~~~d~~G-fe~~~~l~~Vn~~~~~~~c 37 (414)
T COG1625 4 KISKVGGISGADCDG-FEEGDYLLKVNPGFGCKDC 37 (414)
T ss_pred ceeeccCCCcccccC-ccccceeeecCCCCCCCcC
Confidence 466788888999998 99999999999 7766554
No 108
>KOG1945|consensus
Probab=26.70 E-value=42 Score=27.52 Aligned_cols=77 Identities=26% Similarity=0.364 Sum_probs=55.6
Q ss_pred EEEecCCCCCCeEEeccCCC------CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 67 VELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 67 v~l~~~~~g~G~~l~~~~~~------~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
+-+.++..|+|+.+.+-... ..++++....+|+.-++.|+..+-|.+..+.+......+..-.....+..-..+
T Consensus 103 ~av~~~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S~~~~ 182 (377)
T KOG1945|consen 103 VAVEKGAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGSSSRV 182 (377)
T ss_pred hhccCCcCCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccchhcc
Confidence 34455567777777652111 235888899999999999999999999999998888887777777666554334
Q ss_pred EEE
Q psy12578 141 KLV 143 (172)
Q Consensus 141 ~l~ 143 (172)
+++
T Consensus 183 n~~ 185 (377)
T KOG1945|consen 183 NFT 185 (377)
T ss_pred CCc
Confidence 443
No 109
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=24.93 E-value=56 Score=19.29 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=23.4
Q ss_pred EEEecCCCCCCeEEeccCCCCCCeEEE--eecCCChhhhcCCCCCCCEEE
Q psy12578 67 VELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLL 114 (172)
Q Consensus 67 v~l~~~~~g~G~~l~~~~~~~~~~~V~--~v~~g~~A~~~G~L~~GD~I~ 114 (172)
|.-.....|+||....+.+ ..+|+. .+..++ . . .|..||.|.
T Consensus 5 V~~~~~~kgyGFI~~~~~~--~diFfh~s~~~~~~--~-~-~l~~G~~V~ 48 (66)
T PF00313_consen 5 VKWFDDEKGYGFITSDDGG--EDIFFHISDLSGNG--F-R-SLKEGDRVE 48 (66)
T ss_dssp EEEEETTTTEEEEEETTSS--SEEEEEGGGBCSSS--S-T-S--TTSEEE
T ss_pred EEEEECCCCceEEEEcccc--eeEEeccccccccc--c-c-cCCCCCEEE
Confidence 4455567899998876432 246765 333333 1 1 388888875
No 110
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=24.46 E-value=83 Score=18.98 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=24.9
Q ss_pred EEEEecCCCCCCeEEeccCCCCCCeEEE--eecCCChhhhcCCCCCCCEEEE
Q psy12578 66 VVELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 66 ~v~l~~~~~g~G~~l~~~~~~~~~~~V~--~v~~g~~A~~~G~L~~GD~I~~ 115 (172)
+|.......||||...... ..-+|+. .+...+ .. .|..|+.|.-
T Consensus 5 ~Vk~f~~~kGfGFI~~~~g--~~dvfvH~s~~~~~g---~~-~l~~G~~V~f 50 (68)
T TIGR02381 5 IVKWFNNAKGFGFICPEGV--DGDIFAHYSTIQMDG---YR-TLKAGQKVQF 50 (68)
T ss_pred EEEEEeCCCCeEEEecCCC--CccEEEEHHHhhhcC---CC-CCCCCCEEEE
Confidence 3555666799999876421 2236665 232211 11 3888887764
No 111
>PRK06031 phosphoribosyltransferase; Provisional
Probab=23.00 E-value=2.7e+02 Score=21.37 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=30.1
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 107 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 107 L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
+..|+.|+-|++.-.++.+...+.++++..|..
T Consensus 151 ~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~ 183 (233)
T PRK06031 151 LLEGRRVALIDDVISSGASIVAGLRLLAACGIE 183 (233)
T ss_pred cCCCCEEEEEEeEccccHHHHHHHHHHHHcCCe
Confidence 568999999999999999999999999999855
No 112
>KOG1712|consensus
Probab=22.64 E-value=1.8e+02 Score=21.35 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=32.1
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 105 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 105 G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
|.+++|++++-|++.--++=+...+.+++.+.+..|
T Consensus 117 ~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~v 152 (183)
T KOG1712|consen 117 GAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEV 152 (183)
T ss_pred cccCCCCeEEEEechhhcCccHHHHHHHHHHhccEE
Confidence 459999999999999999999999999999988763
No 113
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=22.52 E-value=1.6e+02 Score=25.53 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=33.1
Q ss_pred CCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EEEEEEE
Q psy12578 108 KRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VKLVVRY 146 (172)
Q Consensus 108 ~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~-v~l~v~r 146 (172)
..|-.|+-|++.-+++.|...++++|+..|-. |.+.+..
T Consensus 375 ~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~s 414 (500)
T PRK07349 375 LAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISS 414 (500)
T ss_pred cCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCC
Confidence 35788999999999999999999999998755 7777643
No 114
>PRK09213 pur operon repressor; Provisional
Probab=21.87 E-value=1.8e+02 Score=22.96 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=31.1
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 107 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 107 L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
|..|+.++-|++.--.+-+...+.++++..+..
T Consensus 193 l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~ 225 (271)
T PRK09213 193 LKEGSRVLIVDDFMKAGGTINGMISLLKEFDAE 225 (271)
T ss_pred cCCcCEEEEEeeecccCHhHHHHHHHHHHCCCE
Confidence 889999999999999999999999999999876
No 115
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=21.40 E-value=1.5e+02 Score=25.41 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=34.2
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EEEEEEEC
Q psy12578 107 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VKLVVRYT 147 (172)
Q Consensus 107 L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~-v~l~v~r~ 147 (172)
.-.|..|+-|++.-+++.|...+.++|+..|-. |.+.+...
T Consensus 345 ~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sP 386 (475)
T PRK07631 345 VVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSP 386 (475)
T ss_pred ccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence 445889999999999999999999999998754 88877543
No 116
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=21.39 E-value=2.3e+02 Score=20.78 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=30.6
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 107 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 107 L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
+..|+.++-|++.--++.+...+.+++++.+..
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~ 143 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGGI 143 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 778999999999999999999999999999866
No 117
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=21.03 E-value=70 Score=22.11 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=20.2
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 106 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 106 ~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
++.+|+.|++|.+ .+.+.+..+++.+.
T Consensus 95 rV~~G~ilfEi~~-----~~~~~a~~al~~a~ 121 (126)
T TIGR01164 95 VVKPGKILFEIAG-----VPEEVAREAFRLAA 121 (126)
T ss_pred EECCCCEEEEEeC-----CCHHHHHHHHHHHH
Confidence 4899999999988 34567777776654
No 118
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=20.77 E-value=1.6e+02 Score=25.03 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=33.2
Q ss_pred CCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EEEEEEE
Q psy12578 108 KRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VKLVVRY 146 (172)
Q Consensus 108 ~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~-v~l~v~r 146 (172)
-.|-.|+-|++.-+++.|...++++|+..|-. |.+.+..
T Consensus 332 v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~s 371 (442)
T PRK08341 332 INGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIAS 371 (442)
T ss_pred cCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcC
Confidence 35788999999999999999999999998754 8887743
No 119
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=20.22 E-value=1.7e+02 Score=16.98 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=24.3
Q ss_pred EEEecCCCCCCeEEeccCCCCCCeEEEe--ecCCChhhhcCCCCCCCEEEE
Q psy12578 67 VELPKTDEGLGFNVMGGKEQNSPIYISR--IIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 67 v~l~~~~~g~G~~l~~~~~~~~~~~V~~--v~~g~~A~~~G~L~~GD~I~~ 115 (172)
|.......|+||...... ..-+|+.. +...+ . ..+..||.|.-
T Consensus 5 Vk~~~~~kGfGFI~~~~~--g~diffh~~~~~~~~---~-~~~~~G~~V~f 49 (65)
T cd04458 5 VKWFDDEKGFGFITPDDG--GEDVFVHISALEGDG---F-RSLEEGDRVEF 49 (65)
T ss_pred EEEEECCCCeEEEecCCC--CcCEEEEhhHhhccC---C-CcCCCCCEEEE
Confidence 444455689999886532 22366652 32222 1 24888888764
Done!