Query psy12578
Match_columns 172
No_of_seqs 210 out of 1766
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 22:55:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r6j_A Syntenin 1; PDZ, membra 99.8 6.3E-18 2.1E-22 108.3 11.8 77 62-146 3-80 (82)
2 2dkr_A LIN-7 homolog B; LIN-7B 99.8 2.4E-17 8E-22 107.9 12.2 88 62-149 4-91 (93)
3 3i4w_A Disks large homolog 4; 99.7 6.1E-17 2.1E-21 108.1 12.6 93 61-154 9-101 (104)
4 3gge_A PDZ domain-containing p 99.7 7.7E-17 2.6E-21 105.4 11.8 84 63-148 5-90 (95)
5 2he4_A Na(+)/H(+) exchange reg 99.7 1E-16 3.5E-21 104.3 12.2 85 62-148 3-87 (90)
6 2q9v_A Membrane-associated gua 99.7 5.2E-17 1.8E-21 105.7 10.4 85 63-147 2-88 (90)
7 2r4h_A Membrane-associated gua 99.7 7.6E-17 2.6E-21 109.2 11.5 92 58-149 19-110 (112)
8 1uep_A Membrane associated gua 99.7 3E-17 1E-21 109.5 9.2 88 61-148 7-96 (103)
9 2d92_A INAD-like protein; PDZ 99.7 7.3E-17 2.5E-21 108.6 10.9 88 62-149 14-106 (108)
10 1i16_A Interleukin 16, LCF; cy 99.7 3.3E-17 1.1E-21 113.9 9.4 88 61-148 27-118 (130)
11 2fne_A Multiple PDZ domain pro 99.7 4.5E-17 1.5E-21 111.3 9.9 89 61-149 23-114 (117)
12 2iwo_A Multiple PDZ domain pro 99.7 3.6E-17 1.2E-21 112.2 9.4 90 61-150 22-115 (120)
13 2v90_A PDZ domain-containing p 99.7 1.2E-16 4E-21 105.3 11.5 86 63-149 3-90 (96)
14 2byg_A Channel associated prot 99.7 5E-17 1.7E-21 111.0 10.0 88 62-149 23-115 (117)
15 1uhp_A Hypothetical protein KI 99.7 2.3E-16 7.8E-21 105.9 12.8 89 61-149 6-102 (107)
16 3b76_A E3 ubiquitin-protein li 99.7 8E-17 2.7E-21 110.2 10.6 88 61-148 22-113 (118)
17 1wi2_A Riken cDNA 2700099C19; 99.7 2.3E-16 7.8E-21 105.4 12.5 87 61-149 13-100 (104)
18 2jik_A Synaptojanin-2 binding 99.7 2.6E-16 8.8E-21 104.5 12.6 87 63-149 7-98 (101)
19 1qav_A Alpha-1 syntrophin (res 99.7 1.6E-16 5.5E-21 103.4 11.3 86 62-147 3-89 (90)
20 2fe5_A Presynaptic protein SAP 99.7 3.3E-16 1.1E-20 102.6 12.8 86 63-148 3-93 (94)
21 2i1n_A Discs, large homolog 3; 99.7 2.2E-16 7.5E-21 105.0 12.0 88 63-150 4-96 (102)
22 3o46_A Maguk P55 subfamily mem 99.7 2.7E-16 9.2E-21 102.9 12.2 85 63-148 4-88 (93)
23 2dc2_A GOPC, golgi associated 99.7 1.5E-16 5.2E-21 106.2 11.0 88 61-149 7-96 (103)
24 2f5y_A Regulator of G-protein 99.7 2.4E-16 8.1E-21 102.8 11.7 84 63-151 3-86 (91)
25 2awx_A Synapse associated prot 99.7 2.6E-16 8.9E-21 105.3 12.0 88 63-150 3-95 (105)
26 1d5g_A Human phosphatase HPTP1 99.7 5.3E-16 1.8E-20 102.0 13.2 88 62-149 4-94 (96)
27 4e34_A Golgi-associated PDZ an 99.7 2.3E-16 8E-21 101.9 11.2 83 63-146 2-86 (87)
28 1g9o_A NHE-RF; PDZ domain, com 99.7 4.1E-16 1.4E-20 101.6 12.4 84 63-148 3-87 (91)
29 2ego_A General receptor for ph 99.7 3.4E-16 1.2E-20 103.1 12.1 85 62-147 3-95 (96)
30 1ufx_A KIAA1526 protein; PDZ d 99.7 2.1E-16 7.1E-21 105.6 11.1 87 63-149 6-98 (103)
31 3qe1_A Sorting nexin-27, G pro 99.7 3.8E-16 1.3E-20 104.7 12.4 88 61-149 4-103 (107)
32 2opg_A Multiple PDZ domain pro 99.7 3.6E-16 1.2E-20 103.2 12.1 88 63-150 4-92 (98)
33 2uzc_A Human pdlim5, PDZ and L 99.7 2.5E-16 8.7E-21 101.9 11.1 83 64-148 4-86 (88)
34 2i04_A Membrane-associated gua 99.7 4.3E-16 1.5E-20 100.2 12.1 82 65-146 2-85 (85)
35 1wi4_A Synip, syntaxin binding 99.7 2.2E-16 7.5E-21 106.5 11.1 87 61-148 13-105 (109)
36 1wha_A KIAA0147 protein, scrib 99.7 2.8E-16 9.6E-21 105.1 11.5 89 61-149 5-99 (105)
37 2vsp_A PDZ domain-containing p 99.7 6.8E-17 2.3E-21 105.4 8.1 86 62-149 2-87 (91)
38 3hpk_A Protein interacting wit 99.7 7.6E-16 2.6E-20 106.2 13.8 87 63-149 19-106 (125)
39 1n7e_A AMPA receptor interacti 99.7 6.4E-16 2.2E-20 101.9 12.9 87 63-149 5-91 (97)
40 1ueq_A Membrane associated gua 99.7 7.3E-16 2.5E-20 106.0 13.3 87 62-148 18-106 (123)
41 1ihj_A INAD; intermolecular di 99.7 4.7E-16 1.6E-20 102.6 11.7 86 63-148 5-97 (98)
42 1um1_A KIAA1849 protein, RSGI 99.7 1.1E-15 3.8E-20 103.0 13.5 91 61-151 6-99 (110)
43 2eno_A Synaptojanin-2-binding 99.7 5E-16 1.7E-20 106.4 11.8 88 62-149 16-108 (120)
44 1rgw_A ZAsp protein; PDZ, cyph 99.7 3.1E-16 1.1E-20 100.8 10.1 82 65-148 3-84 (85)
45 3r68_A Na(+)/H(+) exchange reg 99.7 5.7E-16 1.9E-20 101.6 11.6 86 61-148 3-88 (95)
46 2jil_A GRIP1 protein, glutamat 99.7 3.9E-16 1.3E-20 102.9 10.7 87 64-150 4-94 (97)
47 2kv8_A RGS12, regulator of G-p 99.7 1.2E-16 4E-21 102.5 7.9 81 63-148 2-82 (83)
48 2ehr_A INAD-like protein; PDZ 99.7 5.3E-16 1.8E-20 105.7 11.6 92 58-149 10-111 (117)
49 2daz_A INAD-like protein; PDZ 99.7 7.9E-16 2.7E-20 106.0 12.6 91 62-152 24-115 (124)
50 2djt_A Unnamed protein product 99.7 5E-16 1.7E-20 103.6 11.2 89 61-149 9-99 (104)
51 2eeg_A PDZ and LIM domain prot 99.7 5.5E-16 1.9E-20 101.7 11.2 86 62-149 7-92 (94)
52 3l4f_D SH3 and multiple ankyri 99.7 1E-15 3.6E-20 106.6 13.2 87 62-149 26-125 (132)
53 2d90_A PDZ domain containing p 99.7 6.9E-16 2.4E-20 102.6 11.5 86 61-148 4-89 (102)
54 1ujd_A KIAA0559 protein; PDZ d 99.7 3.6E-16 1.2E-20 106.7 10.1 89 63-151 12-112 (117)
55 3cbz_A Dishevelled-2; PDZ doma 99.7 3.4E-16 1.2E-20 105.4 9.8 86 63-148 5-96 (108)
56 1m5z_A GRIP, AMPA receptor int 99.7 1.9E-15 6.5E-20 98.4 13.1 85 62-148 5-91 (91)
57 2dlu_A INAD-like protein; PDZ 99.7 8.1E-16 2.8E-20 103.8 11.2 88 60-149 12-99 (111)
58 2pa1_A PDZ and LIM domain prot 99.7 1.2E-15 4.2E-20 98.5 11.4 78 71-149 9-86 (87)
59 3axa_A Afadin, nectin-3, prote 99.7 9.1E-16 3.1E-20 102.8 11.2 89 62-151 10-101 (106)
60 1kwa_A Hcask/LIN-2 protein; PD 99.7 9.7E-16 3.3E-20 99.4 10.7 82 64-148 2-85 (88)
61 1q7x_A PDZ2B domain of PTP-BAS 99.7 7.9E-16 2.7E-20 103.4 10.6 90 61-150 7-104 (108)
62 4amh_A Disks large homolog 1; 99.7 1.2E-15 4E-20 102.4 11.3 82 68-149 7-93 (106)
63 3egg_C Spinophilin; PP1, serin 99.7 1.1E-15 3.7E-20 110.9 11.9 86 62-147 79-170 (170)
64 2dls_A PDZ-rhogef, RHO guanine 99.7 2E-15 6.9E-20 98.8 12.2 83 61-149 6-88 (93)
65 2db5_A INAD-like protein; PDZ 99.7 7.6E-16 2.6E-20 106.6 10.6 89 61-149 23-116 (128)
66 2qg1_A Multiple PDZ domain pro 99.7 2.7E-15 9.2E-20 97.8 12.7 85 63-148 4-89 (92)
67 1v62_A KIAA1719 protein; struc 99.7 1.2E-15 4.1E-20 104.1 11.4 89 61-149 13-103 (117)
68 1tp5_A Presynaptic density pro 99.7 2.3E-15 7.7E-20 102.8 12.7 93 59-152 10-102 (119)
69 2kpk_A Membrane-associated gua 99.7 9.6E-16 3.3E-20 106.3 11.0 88 62-149 17-106 (129)
70 1wf8_A Neurabin-I; PDZ domain, 99.7 7E-16 2.4E-20 103.5 9.9 88 62-149 8-101 (107)
71 2q3g_A PDZ and LIM domain prot 99.7 8.5E-16 2.9E-20 99.7 9.9 83 65-149 5-87 (89)
72 2dm8_A INAD-like protein; PDZ 99.7 5.1E-16 1.7E-20 105.6 9.0 90 61-150 15-105 (116)
73 2o2t_A Multiple PDZ domain pro 99.7 8.1E-16 2.8E-20 104.8 10.0 90 61-150 18-112 (117)
74 2eei_A PDZ domain-containing p 99.7 8.2E-16 2.8E-20 102.9 9.7 87 60-148 5-91 (106)
75 3nfk_A Tyrosine-protein phosph 99.6 1.4E-15 4.7E-20 102.0 10.5 86 62-147 16-107 (107)
76 2vwr_A Ligand of NUMB protein 99.6 3.7E-15 1.3E-19 97.8 12.4 85 64-149 4-90 (95)
77 1x5q_A LAP4 protein; PDZ domai 99.6 3E-15 1E-19 100.9 12.1 88 62-150 14-107 (110)
78 2w4f_A Protein LAP4; structura 99.6 3.5E-15 1.2E-19 98.2 12.1 86 63-149 3-94 (97)
79 2pkt_A PDZ and LIM domain prot 99.6 1.9E-15 6.5E-20 98.4 10.4 85 64-150 4-88 (91)
80 1nf3_C PAR-6B; semi-CRIB motif 99.6 1.7E-15 5.8E-20 104.9 10.8 91 59-149 25-126 (128)
81 1um7_A Synapse-associated prot 99.6 8.8E-16 3E-20 103.8 9.1 94 61-155 13-106 (113)
82 1mfg_A ERB-B2 interacting prot 99.6 4.8E-15 1.6E-19 97.3 12.3 81 65-148 5-93 (95)
83 2yt7_A Amyloid beta A4 precurs 99.6 5.2E-15 1.8E-19 98.3 12.5 89 61-149 7-100 (101)
84 2cs5_A Tyrosine-protein phosph 99.6 8.6E-16 3E-20 105.0 8.8 86 62-148 14-106 (119)
85 1uju_A Scribble; PDZ domain, c 99.6 4.6E-16 1.6E-20 105.1 7.3 88 61-148 7-104 (111)
86 2g5m_B Neurabin-2; spinophilin 99.6 1.6E-15 5.5E-20 102.7 10.0 89 63-151 4-98 (113)
87 2jre_A C60-1 PDZ domain peptid 99.6 3.3E-15 1.1E-19 100.3 11.4 89 62-150 11-106 (108)
88 2jxo_A Ezrin-radixin-moesin-bi 99.6 2.6E-15 8.8E-20 99.1 10.5 86 61-148 7-93 (98)
89 1wfv_A Membrane associated gua 99.6 5.3E-16 1.8E-20 103.3 7.2 88 62-149 10-97 (103)
90 1wf7_A Enigma homologue protei 99.6 1.3E-15 4.3E-20 101.6 8.7 86 63-150 5-90 (103)
91 1wg6_A Hypothetical protein (r 99.6 1E-15 3.5E-20 105.9 8.5 85 65-149 27-123 (127)
92 1uew_A Membrane associated gua 99.6 7E-15 2.4E-19 99.7 12.5 88 61-149 8-104 (114)
93 1q3o_A Shank1; PDZ, GKAP, pept 99.6 6.5E-15 2.2E-19 99.1 12.1 85 63-148 7-104 (109)
94 2vsv_A Rhophilin-2; scaffold p 99.6 4.1E-15 1.4E-19 100.2 11.0 81 63-148 23-104 (109)
95 2ejy_A 55 kDa erythrocyte memb 99.6 4.5E-15 1.5E-19 98.0 10.9 84 62-147 11-95 (97)
96 2eeh_A PDZ domain-containing p 99.6 5.6E-15 1.9E-19 97.9 11.4 87 61-149 8-95 (100)
97 2gzv_A PRKCA-binding protein; 99.6 1.2E-14 4.1E-19 98.7 13.2 87 61-147 22-109 (114)
98 2csj_A TJP2 protein; PDZ domai 99.6 3.4E-15 1.2E-19 101.7 10.1 86 62-149 13-105 (117)
99 1va8_A Maguk P55 subfamily mem 99.6 7.2E-15 2.5E-19 99.6 11.5 84 62-149 24-109 (113)
100 2koj_A Partitioning defective 99.6 1.2E-14 4E-19 98.0 12.5 89 62-150 10-103 (111)
101 3ngh_A PDZ domain-containing p 99.6 8.9E-15 3E-19 97.9 11.7 84 64-149 2-86 (106)
102 1n7t_A 99-MER peptide of densi 99.6 8.6E-15 2.9E-19 97.5 11.5 84 62-148 10-101 (103)
103 1x6d_A Interleukin-16; PDZ dom 99.6 8.8E-15 3E-19 99.9 11.4 89 62-150 14-105 (119)
104 1z87_A Alpha-1-syntrophin; pro 99.6 1.8E-15 6.1E-20 116.5 8.8 88 62-150 76-165 (263)
105 3soe_A Membrane-associated gua 99.6 1.1E-14 3.8E-19 98.4 11.7 82 62-149 11-94 (113)
106 2yuy_A RHO GTPase activating p 99.6 6.6E-16 2.2E-20 106.7 5.7 89 60-149 5-121 (126)
107 3k1r_A Harmonin; protein-prote 99.6 7.5E-15 2.6E-19 108.3 11.4 87 61-149 82-169 (192)
108 2h2b_A Tight junction protein 99.6 1.4E-14 5E-19 97.0 11.7 86 62-149 6-98 (107)
109 2iwq_A Multiple PDZ domain pro 99.6 2.3E-14 7.8E-19 98.6 12.6 91 59-149 20-120 (123)
110 2fcf_A Multiple PDZ domain pro 99.6 2.4E-14 8.3E-19 95.2 12.4 87 63-149 4-100 (103)
111 1v6b_A Harmonin isoform A1; st 99.6 1.1E-14 3.7E-19 99.5 10.8 86 63-149 18-108 (118)
112 3khf_A Microtubule-associated 99.6 8.1E-15 2.8E-19 96.9 9.8 84 65-149 4-94 (99)
113 3bpu_A Membrane-associated gua 99.6 1.3E-14 4.5E-19 93.8 10.6 82 63-148 3-86 (88)
114 1wfg_A Regulating synaptic mem 99.6 1.7E-14 6E-19 100.2 11.6 76 73-148 47-127 (131)
115 2qkv_A Inactivation-NO-after-p 99.6 2.1E-14 7E-19 94.5 11.3 85 61-148 6-91 (96)
116 2dmz_A INAD-like protein; PDZ 99.6 1.1E-14 3.8E-19 100.8 10.5 89 62-150 14-108 (129)
117 2e7k_A Maguk P55 subfamily mem 99.6 9.6E-15 3.3E-19 95.3 9.5 83 62-148 5-88 (91)
118 2kom_A Partitioning defective 99.6 5.6E-14 1.9E-18 96.3 13.4 87 62-148 29-120 (121)
119 2edp_A Fragment, shroom family 99.6 7E-15 2.4E-19 97.5 8.6 86 62-149 8-95 (100)
120 3gsl_A Disks large homolog 4; 99.6 1.9E-14 6.4E-19 105.7 11.8 86 63-148 5-95 (196)
121 1vb7_A PDZ and LIM domain 2; P 99.6 5.3E-15 1.8E-19 96.9 7.7 77 72-149 14-90 (94)
122 2iwn_A Multiple PDZ domain pro 99.6 3.3E-14 1.1E-18 93.3 11.6 85 64-148 5-93 (97)
123 1whd_A RGS3, regulator of G-pr 99.6 9.5E-15 3.2E-19 96.8 8.9 83 61-148 13-95 (100)
124 2edv_A FERM and PDZ domain-con 99.6 5.7E-15 2E-19 97.2 7.6 82 61-148 6-89 (96)
125 2la8_A Inactivation-NO-after-p 99.6 2.7E-14 9.3E-19 95.7 10.8 81 65-148 4-85 (106)
126 2kjd_A Sodium/hydrogen exchang 99.6 3.1E-14 1E-18 98.3 11.2 88 61-150 7-95 (128)
127 3kzd_A TIAM-1, T-lymphoma inva 99.6 4.5E-14 1.5E-18 92.4 11.3 84 63-149 6-93 (94)
128 3r0h_A INAD, inactivation-NO-a 99.6 5.4E-14 1.9E-18 104.4 13.1 91 59-149 14-109 (206)
129 3e17_A Tight junction protein 99.6 4.5E-14 1.6E-18 91.4 11.0 77 67-149 4-82 (88)
130 1uez_A KIAA1526 protein; PDZ d 99.6 1.4E-14 4.7E-19 96.1 8.5 87 61-149 6-94 (101)
131 2z17_A Pleckstrin homology SEC 99.6 4E-14 1.4E-18 94.4 10.7 83 61-144 13-103 (104)
132 2edz_A PDZ domain-containing p 99.6 4E-14 1.4E-18 96.0 10.5 87 62-150 12-99 (114)
133 3tsv_A Tight junction protein 99.6 5E-14 1.7E-18 97.0 11.2 85 65-153 31-117 (124)
134 1uit_A Human discs large 5 pro 99.6 3.6E-14 1.2E-18 96.6 10.3 87 63-152 19-105 (117)
135 1v5q_A GRIP1 homolog, glutamat 99.6 4.9E-14 1.7E-18 96.7 10.9 88 62-149 14-108 (122)
136 1ujv_A Membrane associated gua 99.5 1.6E-13 5.6E-18 90.2 12.7 83 61-149 8-92 (96)
137 1vae_A Rhophilin 2, rhophilin, 99.5 6.2E-15 2.1E-19 99.7 5.8 86 57-147 9-95 (111)
138 1wif_A RSGI RUH-020, riken cDN 99.5 3.1E-14 1E-18 98.2 9.3 83 62-147 26-110 (126)
139 1x5n_A Harmonin; PDZ domain, u 99.5 1.6E-13 5.5E-18 92.9 11.8 86 62-149 14-101 (114)
140 2d8i_A T-cell lymphoma invasio 99.5 4E-14 1.4E-18 96.1 8.3 86 62-150 14-103 (114)
141 2qt5_A Glutamate receptor-inte 99.5 1.4E-13 4.8E-18 101.8 12.0 87 61-148 5-93 (200)
142 3sfj_A TAX1-binding protein 3; 99.5 2E-13 6.8E-18 90.9 10.9 82 65-147 6-104 (104)
143 2vz5_A TAX1-binding protein 3; 99.5 1.2E-13 4.1E-18 96.9 10.2 87 63-150 23-126 (139)
144 1v5l_A PDZ and LIM domain 3; a 99.5 2.1E-14 7.1E-19 95.7 5.9 83 65-149 7-89 (103)
145 2lob_A Golgi-associated PDZ an 99.3 1.3E-15 4.5E-20 103.2 0.0 84 61-145 25-110 (112)
146 3shw_A Tight junction protein 99.5 1.6E-13 5.6E-18 113.3 11.9 88 64-155 2-91 (468)
147 1y7n_A Amyloid beta A4 precurs 99.5 3.6E-13 1.2E-17 87.6 11.0 77 63-147 11-89 (90)
148 2xkx_A Disks large homolog 4; 99.5 1.6E-13 5.4E-18 119.2 12.1 94 56-149 52-150 (721)
149 1qau_A Neuronal nitric oxide s 99.5 6.1E-13 2.1E-17 89.7 12.2 84 65-150 3-89 (112)
150 2qbw_A PDZ-fibronectin fusion 99.5 4.4E-13 1.5E-17 98.6 11.9 72 73-146 1-80 (195)
151 1uf1_A KIAA1526 protein; PDZ d 99.5 3.3E-13 1.1E-17 93.2 10.5 87 63-151 20-107 (128)
152 3qik_A Phosphatidylinositol 3, 99.5 9.7E-13 3.3E-17 86.7 11.2 79 64-146 18-99 (101)
153 1b8q_A Protein (neuronal nitri 99.4 4.2E-13 1.4E-17 92.5 8.9 87 62-150 7-96 (127)
154 2krg_A Na(+)/H(+) exchange reg 99.4 1.3E-13 4.6E-18 103.4 6.7 87 61-149 7-94 (216)
155 3gsl_A Disks large homolog 4; 99.4 1.1E-12 3.7E-17 96.3 11.0 86 64-149 101-191 (196)
156 3cyy_A Tight junction protein 99.4 2.7E-12 9.3E-17 83.3 11.5 82 63-150 2-85 (92)
157 3tsz_A Tight junction protein 99.4 7.9E-13 2.7E-17 107.3 10.7 87 63-153 9-97 (391)
158 1p1d_A PDZ45, glutamate recept 99.4 1.7E-12 5.7E-17 95.8 11.2 87 63-149 6-99 (196)
159 2eaq_A LIM domain only protein 99.4 4E-12 1.4E-16 82.3 10.6 80 65-148 5-89 (90)
160 2xkx_A Disks large homolog 4; 99.4 2.8E-12 9.5E-17 111.4 12.8 94 63-157 307-400 (721)
161 2qt5_A Glutamate receptor-inte 99.4 4.6E-12 1.6E-16 93.6 10.7 88 64-151 107-198 (200)
162 1w9e_A Syntenin 1; cell adhesi 99.4 1.4E-11 4.7E-16 88.6 12.5 83 62-148 3-87 (166)
163 3r0h_A INAD, inactivation-NO-a 99.4 5.9E-12 2E-16 93.3 10.8 82 64-148 114-196 (206)
164 2rcz_A Tight junction protein 99.3 2.6E-11 8.8E-16 76.6 11.5 68 74-147 13-80 (81)
165 2yub_A LIMK-2, LIM domain kina 99.3 1.3E-11 4.6E-16 84.0 10.3 87 63-150 12-107 (118)
166 1wh1_A KIAA1095 protein; PDZ d 99.3 1.5E-11 5.1E-16 84.4 8.0 86 63-150 19-109 (124)
167 3suz_A Amyloid beta A4 precurs 99.3 2.6E-11 8.9E-16 98.3 10.6 97 55-151 196-297 (388)
168 1p1d_A PDZ45, glutamate recept 99.2 2.4E-10 8.4E-15 84.1 11.6 85 64-148 108-195 (196)
169 2l97_A HTRA, putative serine p 98.9 1.1E-08 3.7E-13 71.0 10.1 60 87-150 56-117 (134)
170 2pzd_A Serine protease HTRA2; 98.9 1.3E-08 4.5E-13 68.3 9.1 60 87-150 34-93 (113)
171 2kjp_A Uncharacterized protein 98.8 1.6E-09 5.5E-14 70.3 3.4 58 89-150 2-61 (91)
172 3i18_A LMO2051 protein; alpha- 98.8 2.8E-08 9.5E-13 65.4 9.4 60 87-150 6-67 (100)
173 2kl1_A YLBL protein; structure 98.8 8.1E-09 2.8E-13 67.3 6.6 60 87-150 4-65 (94)
174 1fc6_A Photosystem II D1 prote 98.8 2.3E-08 7.9E-13 80.9 10.3 75 74-149 85-160 (388)
175 3rle_A Golgi reassembly-stacki 98.8 1.2E-08 3.9E-13 76.0 7.5 72 75-148 3-76 (209)
176 2i6v_A General secretion pathw 98.8 1.7E-08 5.8E-13 64.7 6.7 58 89-149 20-79 (87)
177 1w9e_A Syntenin 1; cell adhesi 98.8 1.4E-07 4.8E-12 67.4 11.8 75 63-145 88-163 (166)
178 3id1_A Regulator of sigma E pr 98.7 4.4E-08 1.5E-12 63.9 8.0 56 90-148 4-61 (95)
179 2p3w_A Probable serine proteas 98.7 4.9E-08 1.7E-12 65.4 8.4 60 87-150 34-93 (112)
180 2zpm_A Regulator of sigma E pr 98.7 3.7E-08 1.3E-12 63.4 6.9 58 90-150 6-64 (91)
181 3suz_A Amyloid beta A4 precurs 98.7 1.9E-09 6.5E-14 87.4 0.3 66 74-147 308-373 (388)
182 3stj_A Protease DEGQ; serine p 98.7 1.2E-07 4.1E-12 75.7 9.6 61 87-150 262-324 (345)
183 1te0_A Protease DEGS; two doma 98.6 1.5E-07 5.3E-12 74.1 9.7 61 87-150 243-305 (318)
184 3k50_A Putative S41 protease; 98.6 2.8E-08 9.6E-13 80.8 5.4 73 73-149 73-147 (403)
185 2i4s_A General secretion pathw 98.6 1.1E-07 3.9E-12 63.0 7.2 59 89-150 38-98 (105)
186 1y8t_A Hypothetical protein RV 98.6 2.3E-07 8E-12 73.2 10.1 72 75-150 230-304 (324)
187 4fgm_A Aminopeptidase N family 98.5 1.9E-07 6.5E-12 79.5 8.3 70 74-150 485-556 (597)
188 4a8c_A Periplasmic PH-dependen 98.5 4.4E-07 1.5E-11 74.5 9.6 60 88-150 363-422 (436)
189 1lcy_A HTRA2 serine protease; 98.5 4.8E-07 1.6E-11 71.5 8.4 59 88-150 256-314 (325)
190 3pv2_A DEGQ; trypsin fold, PDZ 98.4 4.6E-07 1.6E-11 74.7 7.9 60 88-150 282-343 (451)
191 4a8c_A Periplasmic PH-dependen 98.4 4.1E-07 1.4E-11 74.7 7.4 61 87-150 262-324 (436)
192 3rle_A Golgi reassembly-stacki 98.4 6E-07 2.1E-11 66.6 7.7 71 74-148 95-170 (209)
193 3qo6_A Protease DO-like 1, chl 98.4 5.3E-07 1.8E-11 71.9 7.6 60 88-150 251-323 (348)
194 2hga_A Conserved protein MTH13 98.4 9.9E-07 3.4E-11 60.3 7.9 58 87-149 24-83 (125)
195 1zl8_A LIN-7; heterodimer, alp 98.4 1.8E-07 6.1E-12 52.4 3.1 31 1-31 23-53 (53)
196 3pv2_A DEGQ; trypsin fold, PDZ 98.4 6.4E-07 2.2E-11 73.9 7.2 60 88-150 386-445 (451)
197 3num_A Serine protease HTRA1; 98.3 1E-07 3.5E-12 75.6 0.0 60 88-151 254-313 (332)
198 1ky9_A Protease DO, DEGP, HTRA 98.1 3.9E-07 1.3E-11 75.1 0.0 60 88-150 383-442 (448)
199 1ky9_A Protease DO, DEGP, HTRA 98.0 2.5E-06 8.6E-11 70.3 3.8 60 88-150 286-347 (448)
200 1k32_A Tricorn protease; prote 97.9 2.3E-05 7.9E-10 70.2 8.4 69 74-148 737-815 (1045)
201 4fln_A Protease DO-like 2, chl 97.7 7.4E-05 2.5E-09 62.8 6.6 64 87-152 276-349 (539)
202 4fln_A Protease DO-like 2, chl 97.0 0.0016 5.4E-08 54.7 7.5 55 88-145 415-470 (539)
203 1vf6_A PALS-1, PALS1-associate 91.0 0.27 9.2E-06 30.3 3.6 28 4-31 24-51 (83)
204 1rso_B MLIN-2/CASK, peripheral 84.0 1.2 4.2E-05 25.4 3.4 27 5-31 27-53 (56)
205 1y74_B MLIN-2/CASK, peripheral 78.8 3.1 0.00011 22.9 3.7 29 6-34 19-47 (50)
206 3dor_A Protein CT_858, CPAF; m 56.6 18 0.00063 30.5 5.4 41 75-122 85-125 (583)
207 3uit_A INAD-like protein, magu 52.1 10 0.00035 28.6 2.9 30 4-33 31-60 (265)
208 3lra_A Disks large homolog 1, 48.7 12 0.00039 28.2 2.7 28 7-34 32-59 (254)
209 3uit_A INAD-like protein, magu 36.0 40 0.0014 25.4 3.9 36 6-41 161-196 (265)
210 1vf6_C Maguk P55 subfamily mem 27.4 64 0.0022 18.9 3.0 30 5-34 36-65 (72)
211 3lra_A Disks large homolog 1, 26.2 66 0.0022 24.1 3.6 31 5-35 96-126 (254)
212 2j3t_D Trafficking protein par 24.6 49 0.0017 24.2 2.7 65 74-148 34-102 (219)
213 3m3h_A OPRT, oprtase, orotate 24.4 1E+02 0.0035 22.5 4.5 35 105-139 132-166 (234)
214 2kqz_A Proteasomal ubiquitin r 24.0 50 0.0017 22.7 2.5 27 7-33 71-97 (155)
215 3dez_A OPRT, oprtase, orotate 22.1 1.2E+02 0.0041 22.3 4.5 35 105-139 144-178 (243)
216 2k5n_A Putative cold-shock pro 20.1 40 0.0014 20.0 1.2 41 66-115 6-48 (74)
No 1
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.77 E-value=6.3e-18 Score=108.26 Aligned_cols=77 Identities=23% Similarity=0.418 Sum_probs=70.5
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
..+|+|+|+|+. ++|||+++++ .|..+.+++||+++| |+.||+|++|||+++.+++|++++++|+..+..|
T Consensus 3 ~~~r~v~l~k~~~g~~Gf~i~~g-------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V 74 (82)
T 1r6j_A 3 MDPRTITMHKDSTGHVGFIFKNG-------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVV 74 (82)
T ss_dssp TCCEEEEEECCTTSCCCEEEETT-------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEE
T ss_pred CceEEEEEEECCCCCeEEEEECC-------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEE
Confidence 468999999987 5799999864 478999999999999 9999999999999999999999999999888899
Q ss_pred EEEEEE
Q psy12578 141 KLVVRY 146 (172)
Q Consensus 141 ~l~v~r 146 (172)
+|+|..
T Consensus 75 ~L~v~p 80 (82)
T 1r6j_A 75 TITIMP 80 (82)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999864
No 2
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-17 Score=107.91 Aligned_cols=88 Identities=85% Similarity=1.240 Sum_probs=80.0
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
..+++|+|.+...+|||++.++.+...+++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++..++.+.
T Consensus 4 ~~~r~v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~ 83 (93)
T 2dkr_A 4 GSSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVK 83 (93)
T ss_dssp SCSCEEEEECCTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEEEeCCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEE
Confidence 46799999999999999999877666789999999999999995599999999999999999999999999998888899
Q ss_pred EEEEECCc
Q psy12578 142 LVVRYTPK 149 (172)
Q Consensus 142 l~v~r~~~ 149 (172)
|+|.|++.
T Consensus 84 l~v~r~~~ 91 (93)
T 2dkr_A 84 LVVRSGPS 91 (93)
T ss_dssp EEECCCCS
T ss_pred EEEEeCCC
Confidence 99988763
No 3
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.74 E-value=6.1e-17 Score=108.05 Aligned_cols=93 Identities=39% Similarity=0.718 Sum_probs=82.8
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
...++.|++.+...||||++.++.+ ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++..+..+
T Consensus 9 ~~~~~~v~l~k~~~glG~~~~~~~~-~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 87 (104)
T 3i4w_A 9 PREPRRIVIHRGSTGLGFNIVGGEX-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV 87 (104)
T ss_dssp CSSCEEEEEECBTTBTSEEEEECC--CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEE
T ss_pred CCccEEEEEEeCCCccCEEEECCCC-CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 4578999999999999999998654 447999999999999999889999999999999999999999999999988889
Q ss_pred EEEEEECCchhHHH
Q psy12578 141 KLVVRYTPKVLEEM 154 (172)
Q Consensus 141 ~l~v~r~~~~~~~~ 154 (172)
.|+|.|++..+..+
T Consensus 88 ~l~v~r~~~~~~~~ 101 (104)
T 3i4w_A 88 TIIAQYKPEEYSRF 101 (104)
T ss_dssp EEEEEECHHHHHHH
T ss_pred EEEEEECcchhhhh
Confidence 99999998665543
No 4
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.73 E-value=7.7e-17 Score=105.42 Aligned_cols=84 Identities=24% Similarity=0.348 Sum_probs=74.2
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--CeE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSV 140 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~--~~v 140 (172)
.++.|.|.|...+|||+|.++. ...+||+++.+||+|++.|.|++||.|++|||+++.+++|.+++++|++.+ .++
T Consensus 5 ~~k~V~l~K~~~~LG~tI~~~g--~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~ 82 (95)
T 3gge_A 5 IEKEVNVYKSEDSLGLTITDNG--VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELF 82 (95)
T ss_dssp EEEEEEEECCSSCCCEEEECSS--SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEE
T ss_pred eEEEEEEEECCCCceEEEEcCC--CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEE
Confidence 5688999999999999998632 345899999999999999999999999999999999999999999999964 468
Q ss_pred EEEEEECC
Q psy12578 141 KLVVRYTP 148 (172)
Q Consensus 141 ~l~v~r~~ 148 (172)
+|++.+.-
T Consensus 83 ~L~lv~p~ 90 (95)
T 3gge_A 83 TMKLIEPK 90 (95)
T ss_dssp EEEEEEEC
T ss_pred EEEEECcc
Confidence 88886643
No 5
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.72 E-value=1e-16 Score=104.33 Aligned_cols=85 Identities=35% Similarity=0.576 Sum_probs=77.6
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
..+++|+|.++..||||++.++.+ ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.
T Consensus 3 ~~~r~v~l~k~~~g~G~~~~~~~~-~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~ 80 (90)
T 2he4_A 3 LRPRLCHLRKGPQGYGFNLHSDKS-RPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 80 (90)
T ss_dssp TCCEEEEEECBTTBCCEEEEECSS-SSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEE
T ss_pred CCcEEEEEEECCCCccEEEEccCC-CCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence 468999999999999999998654 4579999999999999999 99999999999999999999999999998888899
Q ss_pred EEEEECC
Q psy12578 142 LVVRYTP 148 (172)
Q Consensus 142 l~v~r~~ 148 (172)
|+|.|..
T Consensus 81 l~v~r~~ 87 (90)
T 2he4_A 81 LLVVGPS 87 (90)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9998865
No 6
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.72 E-value=5.2e-17 Score=105.65 Aligned_cols=85 Identities=42% Similarity=0.739 Sum_probs=76.9
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--CeE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSV 140 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~--~~v 140 (172)
.+++|+|.++..||||++.++.+...+++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++..+ +.+
T Consensus 2 ~~~~v~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v 81 (90)
T 2q9v_A 2 MEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHV 81 (90)
T ss_dssp EEEEEEEECBTTBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEE
T ss_pred CcEEEEEEECCCccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeE
Confidence 457899999999999999987766667999999999999999989999999999999999999999999998874 389
Q ss_pred EEEEEEC
Q psy12578 141 KLVVRYT 147 (172)
Q Consensus 141 ~l~v~r~ 147 (172)
.|+|.|.
T Consensus 82 ~l~v~R~ 88 (90)
T 2q9v_A 82 NLTVRQT 88 (90)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9999875
No 7
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.72 E-value=7.6e-17 Score=109.22 Aligned_cols=92 Identities=32% Similarity=0.585 Sum_probs=79.8
Q ss_pred ccCCCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 58 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 58 ~~~~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
.......++|++.++..||||++.++.+...+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++..+
T Consensus 19 ~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g 98 (112)
T 2r4h_A 19 YFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG 98 (112)
T ss_dssp ----CCEEEEEEECBTTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred ccCCCceEEEEEEcCCCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 33345678999999889999999987665678999999999999999889999999999999999999999999999888
Q ss_pred CeEEEEEEECCc
Q psy12578 138 RSVKLVVRYTPK 149 (172)
Q Consensus 138 ~~v~l~v~r~~~ 149 (172)
..+.|+|.|...
T Consensus 99 ~~v~l~v~R~~~ 110 (112)
T 2r4h_A 99 RRVRLFLKRGET 110 (112)
T ss_dssp TEEEEEEECCEE
T ss_pred CeEEEEEEeCCc
Confidence 889999988653
No 8
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.72 E-value=3e-17 Score=109.54 Aligned_cols=88 Identities=36% Similarity=0.652 Sum_probs=79.3
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CC
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QR 138 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~ 138 (172)
....+.++|.+...||||++.++.+...+++|..|.+++||+++|+|++||+|++|||+++.++++.++..+++.. +.
T Consensus 7 ~~~~~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~ 86 (103)
T 1uep_A 7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNG 86 (103)
T ss_dssp SEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHT
T ss_pred CceEEEEEEEeCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence 3456778999988999999998776667899999999999999999999999999999999999999999999887 67
Q ss_pred eEEEEEEECC
Q psy12578 139 SVKLVVRYTP 148 (172)
Q Consensus 139 ~v~l~v~r~~ 148 (172)
.|.|+|.|..
T Consensus 87 ~v~l~v~R~~ 96 (103)
T 1uep_A 87 QVNLTVRRKV 96 (103)
T ss_dssp EEEEEEEEEC
T ss_pred cEEEEEEeCC
Confidence 8999998875
No 9
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.72 E-value=7.3e-17 Score=108.61 Aligned_cols=88 Identities=36% Similarity=0.574 Sum_probs=78.3
Q ss_pred CCCEEEEEecCCCCCCeEEeccCC----CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKE----QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA- 136 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~----~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~- 136 (172)
..+++|+|.|.+.||||++.++.+ ...+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++..
T Consensus 14 ~~~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 93 (108)
T 2d92_A 14 PEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP 93 (108)
T ss_dssp SSCEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSC
T ss_pred CceEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 366899999999999999998654 245799999999999999999999999999999999999999999999996
Q ss_pred CCeEEEEEEECCc
Q psy12578 137 QRSVKLVVRYTPK 149 (172)
Q Consensus 137 ~~~v~l~v~r~~~ 149 (172)
++.+.|+|.|.+.
T Consensus 94 ~~~v~l~v~R~~~ 106 (108)
T 2d92_A 94 PGLVHLGICSGPS 106 (108)
T ss_dssp SEEEEEEEECCCC
T ss_pred CCeEEEEEEcCCC
Confidence 4579999988763
No 10
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.72 E-value=3.3e-17 Score=113.92 Aligned_cols=88 Identities=30% Similarity=0.544 Sum_probs=77.8
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCC---CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~---~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
....+.|+|.++..||||+|.++.+ ...+++|..|.+++||+++|.|++||+|++|||+++.+++|.+++.+++..+
T Consensus 27 ~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 106 (130)
T 1i16_A 27 EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP 106 (130)
T ss_dssp SEEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC
T ss_pred CCcEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 3466789999989999999999776 3557999999999999999449999999999999999999999999999986
Q ss_pred Ce-EEEEEEECC
Q psy12578 138 RS-VKLVVRYTP 148 (172)
Q Consensus 138 ~~-v~l~v~r~~ 148 (172)
+. +.|+|+|..
T Consensus 107 ~~~v~l~v~r~~ 118 (130)
T 1i16_A 107 DGPVTIVIRRKS 118 (130)
T ss_dssp SSEEEEEEEEES
T ss_pred CceEEEEEEeCC
Confidence 54 999998864
No 11
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.72 E-value=4.5e-17 Score=111.26 Aligned_cols=89 Identities=37% Similarity=0.693 Sum_probs=79.5
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
...+++|+|.|+..||||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||.++.++++.++..+++..+
T Consensus 23 ~~~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 102 (117)
T 2fne_A 23 MPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK 102 (117)
T ss_dssp CCEEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred CCccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 34678899999999999999986532 347999999999999999889999999999999999999999999999988
Q ss_pred CeEEEEEEECCc
Q psy12578 138 RSVKLVVRYTPK 149 (172)
Q Consensus 138 ~~v~l~v~r~~~ 149 (172)
+.+.|+|.|.+.
T Consensus 103 ~~v~l~v~R~g~ 114 (117)
T 2fne_A 103 GTVTLMVLSSDE 114 (117)
T ss_dssp SSEEEEEEECSC
T ss_pred CeEEEEEEeCCc
Confidence 889999999864
No 12
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.71 E-value=3.6e-17 Score=112.22 Aligned_cols=90 Identities=36% Similarity=0.572 Sum_probs=75.6
Q ss_pred CCCCEEEEEecCC-CCCCeEEeccCC---CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12578 61 HAHPRVVELPKTD-EGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136 (172)
Q Consensus 61 ~~~~~~v~l~~~~-~g~G~~l~~~~~---~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 136 (172)
+..++.|+|.|+. .+|||++.++.+ ...+++|..|.++|||+++|.|++||+|++|||.++.++++.+++.+++..
T Consensus 22 ~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~ 101 (120)
T 2iwo_A 22 SMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA 101 (120)
T ss_dssp ---CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC
T ss_pred CCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4578999999987 599999998764 234699999999999999944999999999999999999999999999999
Q ss_pred CCeEEEEEEECCch
Q psy12578 137 QRSVKLVVRYTPKV 150 (172)
Q Consensus 137 ~~~v~l~v~r~~~~ 150 (172)
++.++|+|.|++..
T Consensus 102 ~~~v~l~v~r~g~~ 115 (120)
T 2iwo_A 102 SGSIEMQVVAGGDV 115 (120)
T ss_dssp CSEEEEEEECCTTS
T ss_pred CCeEEEEEEECCcc
Confidence 98999999998643
No 13
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=105.26 Aligned_cols=86 Identities=29% Similarity=0.466 Sum_probs=77.2
Q ss_pred CCEEEEEecCCCCCCeEEecc--CCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGG--KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~--~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
.+|+|+|.++..+|||++.+. .+...+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..+..+
T Consensus 3 ~~r~v~l~k~~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v 81 (96)
T 2v90_A 3 KPRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCV 81 (96)
T ss_dssp CCEEEEEECBTTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred CCEEEEEEeCCCcccEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence 679999999999999999873 3334479999999999999999 9999999999999999999999999999887789
Q ss_pred EEEEEECCc
Q psy12578 141 KLVVRYTPK 149 (172)
Q Consensus 141 ~l~v~r~~~ 149 (172)
.|+|.|.+.
T Consensus 82 ~l~v~r~~~ 90 (96)
T 2v90_A 82 SLTVVDPEA 90 (96)
T ss_dssp EEEEECCCT
T ss_pred EEEEECCCC
Confidence 999998864
No 14
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.71 E-value=5e-17 Score=111.02 Aligned_cols=88 Identities=38% Similarity=0.592 Sum_probs=78.5
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCC-----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~-----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 136 (172)
...+.|++.++..||||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..
T Consensus 23 ~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 102 (117)
T 2byg_A 23 MTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT 102 (117)
T ss_dssp EEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred CceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4567889999889999999987542 34799999999999999999999999999999999999999999999988
Q ss_pred CCeEEEEEEECCc
Q psy12578 137 QRSVKLVVRYTPK 149 (172)
Q Consensus 137 ~~~v~l~v~r~~~ 149 (172)
+..+.|+|.|.+.
T Consensus 103 g~~v~l~v~R~~~ 115 (117)
T 2byg_A 103 SEVVYLKVGKPTT 115 (117)
T ss_dssp CSEEEEEEEEEEE
T ss_pred CCeEEEEEEeCCc
Confidence 8889999988753
No 15
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.71 E-value=2.3e-16 Score=105.94 Aligned_cols=89 Identities=29% Similarity=0.554 Sum_probs=78.5
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCC--------CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQ--------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 132 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~--------~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~ 132 (172)
...+++|+|.|...+|||++.++.+. ..+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+
T Consensus 6 ~~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~ 85 (107)
T 1uhp_A 6 SGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEA 85 (107)
T ss_dssp SSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHH
T ss_pred CcEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 45678899999999999999986542 4579999999999999993399999999999999999999999999
Q ss_pred HHhCCCeEEEEEEECCc
Q psy12578 133 LKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 133 l~~~~~~v~l~v~r~~~ 149 (172)
++..+..+.|+|.|...
T Consensus 86 ~~~~~~~v~l~v~R~~~ 102 (107)
T 1uhp_A 86 FKTAKEPIVVQVLRRTS 102 (107)
T ss_dssp HHHCCSSEEEEEEECCS
T ss_pred HHcCCCcEEEEEEeCCC
Confidence 99988889999988653
No 16
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.71 E-value=8e-17 Score=110.17 Aligned_cols=88 Identities=39% Similarity=0.631 Sum_probs=78.4
Q ss_pred CCCCEEEEEecCC-CCCCeEEeccCC---CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12578 61 HAHPRVVELPKTD-EGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136 (172)
Q Consensus 61 ~~~~~~v~l~~~~-~g~G~~l~~~~~---~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 136 (172)
+..+++|.+.++. .+|||++.++.+ ...+++|..|.++|||+++|+|++||+|++|||.++.++++.+++.+++..
T Consensus 22 ~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~ 101 (118)
T 3b76_A 22 SMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT 101 (118)
T ss_dssp EEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSC
T ss_pred CCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 3467889999875 899999998763 345799999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEECC
Q psy12578 137 QRSVKLVVRYTP 148 (172)
Q Consensus 137 ~~~v~l~v~r~~ 148 (172)
++.+.|+|.|..
T Consensus 102 ~~~v~L~v~R~~ 113 (118)
T 3b76_A 102 SSSIVLKALEVK 113 (118)
T ss_dssp CSEEEEEEEEEE
T ss_pred CCeEEEEEEECC
Confidence 888999998754
No 17
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.71 E-value=2.3e-16 Score=105.43 Aligned_cols=87 Identities=44% Similarity=0.723 Sum_probs=79.0
Q ss_pred CCCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 61 HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 61 ~~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
...+++|+|.+.. .+|||++.++.+...+++|..|.+++||+++| |++||+|++|||..+.++++.++..+++. +..
T Consensus 13 ~~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~ 90 (104)
T 1wi2_A 13 QFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-ARE 90 (104)
T ss_dssp SSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-SSS
T ss_pred CCCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-CCE
Confidence 4568999999987 89999999877666789999999999999999 99999999999999999999999999998 678
Q ss_pred EEEEEEECCc
Q psy12578 140 VKLVVRYTPK 149 (172)
Q Consensus 140 v~l~v~r~~~ 149 (172)
+.|+|+|.+.
T Consensus 91 v~l~v~r~~~ 100 (104)
T 1wi2_A 91 ISMRVRFFSG 100 (104)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEECCC
Confidence 9999998864
No 18
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.71 E-value=2.6e-16 Score=104.54 Aligned_cols=87 Identities=39% Similarity=0.634 Sum_probs=78.5
Q ss_pred CCEEEEEecCCCCCCeEEeccCCC-----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~-----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
.++.|+|.++..+|||++.++.+. ..+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++..+
T Consensus 7 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 86 (101)
T 2jik_A 7 TEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG 86 (101)
T ss_dssp EEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCC
T ss_pred ccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 568899999999999999987653 357999999999999999889999999999999999999999999999888
Q ss_pred CeEEEEEEECCc
Q psy12578 138 RSVKLVVRYTPK 149 (172)
Q Consensus 138 ~~v~l~v~r~~~ 149 (172)
..+.|+|.|++.
T Consensus 87 ~~v~l~v~R~~~ 98 (101)
T 2jik_A 87 YAVSLRVQHRLE 98 (101)
T ss_dssp SEEEEEEEEESC
T ss_pred CeEEEEEEeCCC
Confidence 889999988763
No 19
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.71 E-value=1.6e-16 Score=103.37 Aligned_cols=86 Identities=40% Similarity=0.620 Sum_probs=76.7
Q ss_pred CCCEEEEEecC-CCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 62 AHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 62 ~~~~~v~l~~~-~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
..+++|++.+. ..+|||++.++.+...+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++..+..+
T Consensus 3 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v 82 (90)
T 1qav_A 3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV 82 (90)
T ss_dssp SSCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred CccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence 36799999995 58999999987665668999999999999999339999999999999999999999999999988889
Q ss_pred EEEEEEC
Q psy12578 141 KLVVRYT 147 (172)
Q Consensus 141 ~l~v~r~ 147 (172)
.|+|.|.
T Consensus 83 ~l~v~r~ 89 (90)
T 1qav_A 83 VLEVKYM 89 (90)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9999774
No 20
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.71 E-value=3.3e-16 Score=102.59 Aligned_cols=86 Identities=38% Similarity=0.589 Sum_probs=76.9
Q ss_pred CCEEEEEecCCCCCCeEEeccCCC-----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~-----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
..++|+|.+++.||||++.++.+. ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++..+
T Consensus 3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 82 (94)
T 2fe5_A 3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS 82 (94)
T ss_dssp CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCC
T ss_pred EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 457899999999999999986542 247999999999999999889999999999999999999999999999888
Q ss_pred CeEEEEEEECC
Q psy12578 138 RSVKLVVRYTP 148 (172)
Q Consensus 138 ~~v~l~v~r~~ 148 (172)
+.+.|+|.|+.
T Consensus 83 ~~v~l~v~R~g 93 (94)
T 2fe5_A 83 DMVYLKVAKPG 93 (94)
T ss_dssp SEEEEEEECCC
T ss_pred CeEEEEEEcCC
Confidence 88999998764
No 21
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.70 E-value=2.2e-16 Score=105.04 Aligned_cols=88 Identities=40% Similarity=0.608 Sum_probs=78.9
Q ss_pred CCEEEEEecCCCCCCeEEeccCCC-----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~-----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
..+.|+|.++..||||++.++.+. ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++..+
T Consensus 4 ~~~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 83 (102)
T 2i1n_A 4 KYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAG 83 (102)
T ss_dssp EEEEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred eEEEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 457899999999999999987642 458999999999999999889999999999999999999999999999988
Q ss_pred CeEEEEEEECCch
Q psy12578 138 RSVKLVVRYTPKV 150 (172)
Q Consensus 138 ~~v~l~v~r~~~~ 150 (172)
..+.|+|.|++..
T Consensus 84 ~~v~l~v~R~~~~ 96 (102)
T 2i1n_A 84 PVVRLVVRRRQPP 96 (102)
T ss_dssp SEEEEEEEEECCC
T ss_pred CeEEEEEEeCCCC
Confidence 8899999987643
No 22
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.70 E-value=2.7e-16 Score=102.94 Aligned_cols=85 Identities=32% Similarity=0.531 Sum_probs=76.6
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
..+.|++.|.+.+|||++.++ +...+++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++..++.++|
T Consensus 4 ~~r~v~l~k~~~~lG~~i~~~-~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l 82 (93)
T 3o46_A 4 SVKIIRLVKNREPLGATIKKD-EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITF 82 (93)
T ss_dssp CCEEEEEEESSSCCCEEEEEC-TTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEE
T ss_pred cEEEEEEEeCCCCccEEEEec-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 568899999889999999885 3346799999999999999999999999999999999999999999999999888999
Q ss_pred EEEECC
Q psy12578 143 VVRYTP 148 (172)
Q Consensus 143 ~v~r~~ 148 (172)
+|.+..
T Consensus 83 ~v~~~~ 88 (93)
T 3o46_A 83 KIIPGS 88 (93)
T ss_dssp EEECC-
T ss_pred EEEeCC
Confidence 998764
No 23
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=106.18 Aligned_cols=88 Identities=44% Similarity=0.676 Sum_probs=77.4
Q ss_pred CCCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhc-CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 61 HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRH-GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 61 ~~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~-G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
+..++.|.+.+.. .+|||++.++.+...+++|..|.++|||+++ | |++||+|++|||.++.++++.++..+++..++
T Consensus 7 ~~~~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~g-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~ 85 (103)
T 2dc2_A 7 VGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRG 85 (103)
T ss_dssp --CEEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTC-CCSSEEEEEETTEESTTSCHHHHHHHHHHCCS
T ss_pred CCCcEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 4567889998865 8999999987765567999999999999996 6 99999999999999999999999999999998
Q ss_pred eEEEEEEECCc
Q psy12578 139 SVKLVVRYTPK 149 (172)
Q Consensus 139 ~v~l~v~r~~~ 149 (172)
.+.|+|.+...
T Consensus 86 ~v~l~v~~~~~ 96 (103)
T 2dc2_A 86 EIEFEVVYVAL 96 (103)
T ss_dssp EEEEEEEECC-
T ss_pred cEEEEEEecCC
Confidence 99999988763
No 24
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.70 E-value=2.4e-16 Score=102.84 Aligned_cols=84 Identities=24% Similarity=0.413 Sum_probs=74.5
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
.+++|+|.++..||||.+.+. .+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++..++.+.|
T Consensus 3 ~~r~v~l~~~~~g~G~~l~~~----~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l 77 (91)
T 2f5y_A 3 RYRQITIPRGKDGFGFTICCD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIIL 77 (91)
T ss_dssp EEEEEEEECBTTBTSEEEECS----SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred ceEEEEEEeCCCCccEEEecC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 568899999999999999863 469999999999999999 999999999999999999999999999988888999
Q ss_pred EEEECCchh
Q psy12578 143 VVRYTPKVL 151 (172)
Q Consensus 143 ~v~r~~~~~ 151 (172)
+|.|.....
T Consensus 78 ~v~R~~~~~ 86 (91)
T 2f5y_A 78 LVWRMVPQV 86 (91)
T ss_dssp EEEECC---
T ss_pred EEEeCCCCC
Confidence 999986543
No 25
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.70 E-value=2.6e-16 Score=105.29 Aligned_cols=88 Identities=39% Similarity=0.607 Sum_probs=78.4
Q ss_pred CCEEEEEecCCCCCCeEEeccCCC-----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~-----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
..++|+|.+++.||||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||.++.+.++.++...++..+
T Consensus 3 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 82 (105)
T 2awx_A 3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTS 82 (105)
T ss_dssp CEEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCC
T ss_pred eEEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 457899999999999999987642 247999999999999999989999999999999999999999999999888
Q ss_pred CeEEEEEEECCch
Q psy12578 138 RSVKLVVRYTPKV 150 (172)
Q Consensus 138 ~~v~l~v~r~~~~ 150 (172)
..+.|+|.|....
T Consensus 83 ~~v~l~v~R~~~~ 95 (105)
T 2awx_A 83 DFVYLKVAKPTSM 95 (105)
T ss_dssp SEEEEEEECCCC-
T ss_pred CeEEEEEEcCCCC
Confidence 8899999988754
No 26
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.70 E-value=5.3e-16 Score=102.02 Aligned_cols=88 Identities=39% Similarity=0.665 Sum_probs=78.8
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
..++++.|.+...+|||++.++.+. ..+++|..|.++|||+++|.|++||+|++|||+++.++++.++..+++..+.
T Consensus 4 g~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~ 83 (96)
T 1d5g_A 4 GDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ 83 (96)
T ss_dssp TCEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCS
T ss_pred CCEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 4678899999999999999986542 3579999999999999998899999999999999999999999999998888
Q ss_pred eEEEEEEECCc
Q psy12578 139 SVKLVVRYTPK 149 (172)
Q Consensus 139 ~v~l~v~r~~~ 149 (172)
.+.|+|.|++.
T Consensus 84 ~v~l~v~R~~~ 94 (96)
T 1d5g_A 84 VVHLLLEKGQS 94 (96)
T ss_dssp EEEEEEECCSC
T ss_pred eEEEEEEcCCC
Confidence 89999988763
No 27
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.70 E-value=2.3e-16 Score=101.90 Aligned_cols=83 Identities=47% Similarity=0.729 Sum_probs=74.9
Q ss_pred CCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 63 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADR-HGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 63 ~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~-~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
++++++|.+.. .+|||++.++.+...+++|..|.++|||++ +| |++||+|++|||.++.++++.++..+++..++.+
T Consensus 2 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 80 (87)
T 4e34_A 2 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEI 80 (87)
T ss_dssp CCEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEE
T ss_pred CEEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 57889999975 699999998766566799999999999999 57 9999999999999999999999999999998889
Q ss_pred EEEEEE
Q psy12578 141 KLVVRY 146 (172)
Q Consensus 141 ~l~v~r 146 (172)
.|+|.+
T Consensus 81 ~l~v~~ 86 (87)
T 4e34_A 81 EFEVVY 86 (87)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999865
No 28
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.70 E-value=4.1e-16 Score=101.59 Aligned_cols=84 Identities=37% Similarity=0.581 Sum_probs=73.7
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
.+++|+|.+++.||||++.++.+ ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..++.+.+
T Consensus 3 ~~r~v~l~r~~~g~G~~~~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~ 80 (91)
T 1g9o_A 3 LPRLCCLEKGPNGYGFHLHGEKG-KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRL 80 (91)
T ss_dssp CCEEEEEECBTTBCCEEEEECTT-CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred ccEEEEEEeCCCcccEEEEecCC-CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEE
Confidence 67999999999999999988654 4579999999999999999 999999999999999999999999999988777555
Q ss_pred EE-EECC
Q psy12578 143 VV-RYTP 148 (172)
Q Consensus 143 ~v-~r~~ 148 (172)
.+ +|+.
T Consensus 81 ~~~~r~~ 87 (91)
T 1g9o_A 81 LVVDPET 87 (91)
T ss_dssp EEECCCC
T ss_pred EEEcCCc
Confidence 54 4443
No 29
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.70 E-value=3.4e-16 Score=103.08 Aligned_cols=85 Identities=28% Similarity=0.508 Sum_probs=74.2
Q ss_pred CCCEEEEEecCC-CCCCeEEec-------cCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~-------~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l 133 (172)
..+++|+|.|.. .+|||++.+ +.+...+++|..|.++|||+++| |++||+|++|||.++.++++.++..++
T Consensus 3 ~~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l 81 (96)
T 2ego_A 3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDII 81 (96)
T ss_dssp CCEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 467999999987 799999986 33334578999999999999999 999999999999999999999999999
Q ss_pred HhCCCeEEEEEEEC
Q psy12578 134 KQAQRSVKLVVRYT 147 (172)
Q Consensus 134 ~~~~~~v~l~v~r~ 147 (172)
+..++.+.|+|.+.
T Consensus 82 ~~~~~~v~l~v~~~ 95 (96)
T 2ego_A 82 KASGNVLRLETLYG 95 (96)
T ss_dssp HHTTTEEEEEEECC
T ss_pred HhCCCeEEEEEEEC
Confidence 99888899998764
No 30
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.70 E-value=2.1e-16 Score=105.60 Aligned_cols=87 Identities=28% Similarity=0.515 Sum_probs=77.2
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCe-EEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-----C
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPI-YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-----A 136 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~-~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~-----~ 136 (172)
..+.|++.+...+|||+|.++.+...+. +|..|.+++||+++|+|++||+|++|||+++.+++|++++.+|+. .
T Consensus 6 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~ 85 (103)
T 1ufx_A 6 SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD 85 (103)
T ss_dssp SSEEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred ceEEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCC
Confidence 4688999998899999999987655454 999999999999999999999999999999999999999999988 4
Q ss_pred CCeEEEEEEECCc
Q psy12578 137 QRSVKLVVRYTPK 149 (172)
Q Consensus 137 ~~~v~l~v~r~~~ 149 (172)
++.+.++|.|..+
T Consensus 86 ~~~i~l~v~r~~~ 98 (103)
T 1ufx_A 86 RDYIDFLVTEFNS 98 (103)
T ss_dssp CSEEEEEECCCCC
T ss_pred CCeEEEEEEEccc
Confidence 6679999988753
No 31
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.70 E-value=3.8e-16 Score=104.74 Aligned_cols=88 Identities=39% Similarity=0.721 Sum_probs=76.5
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCC------------CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHH
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQN------------SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 128 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~------------~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~ 128 (172)
+..+++|.|.+...||||++.++.+.. ..++|..|.++|||+++| |+.||+|++|||.++.++++.+
T Consensus 4 ~~~~r~v~l~k~~~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~ 82 (107)
T 3qe1_A 4 GGSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQ 82 (107)
T ss_dssp --CCEEEEEECBTTBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHH
T ss_pred CCCcEEEEEEECCCCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence 457899999999889999999864322 234699999999999999 9999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEECCc
Q psy12578 129 AVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 129 ~~~~l~~~~~~v~l~v~r~~~ 149 (172)
+..+++..+..+.|+|.|...
T Consensus 83 ~~~~l~~~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 83 VVDLIRAGEKELILTVLSVES 103 (107)
T ss_dssp HHHHHHHCSSEEEEEEECSSC
T ss_pred HHHHHHcCCCEEEEEEEcCCC
Confidence 999999888889999988754
No 32
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.70 E-value=3.6e-16 Score=103.21 Aligned_cols=88 Identities=30% Similarity=0.542 Sum_probs=79.0
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCC-CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~-~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
.+++|++.++..+|||++.++.+.. .+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++..+..+.
T Consensus 4 ~~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~ 83 (98)
T 2opg_A 4 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR 83 (98)
T ss_dssp EEEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred CEEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence 4678999999999999999876543 589999999999999998899999999999999999999999999998888899
Q ss_pred EEEEECCch
Q psy12578 142 LVVRYTPKV 150 (172)
Q Consensus 142 l~v~r~~~~ 150 (172)
|+|.|++..
T Consensus 84 l~v~R~~~~ 92 (98)
T 2opg_A 84 LTLYRDEAP 92 (98)
T ss_dssp EEEEECSSC
T ss_pred EEEEcCCCC
Confidence 999998753
No 33
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.70 E-value=2.5e-16 Score=101.95 Aligned_cols=83 Identities=29% Similarity=0.481 Sum_probs=74.6
Q ss_pred CEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12578 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 143 (172)
Q Consensus 64 ~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 143 (172)
..+|++ +++.+|||++.++.+...+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|+
T Consensus 4 ~~~v~l-~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~ 81 (88)
T 2uzc_A 4 NYSVSL-VGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMT 81 (88)
T ss_dssp EEEEEE-ESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred EEEEEE-cCCCcccEEEECcCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 466777 66789999999887766689999999999999999 9999999999999999999999999998888889999
Q ss_pred EEECC
Q psy12578 144 VRYTP 148 (172)
Q Consensus 144 v~r~~ 148 (172)
|.|++
T Consensus 82 v~R~g 86 (88)
T 2uzc_A 82 LQRES 86 (88)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 98875
No 34
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.70 E-value=4.3e-16 Score=100.21 Aligned_cols=82 Identities=30% Similarity=0.515 Sum_probs=73.5
Q ss_pred EEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEE
Q psy12578 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKL 142 (172)
Q Consensus 65 ~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v~l 142 (172)
.++++.++..||||++.++.+...+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.. +..+.|
T Consensus 2 ~~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l 81 (85)
T 2i04_A 2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDL 81 (85)
T ss_dssp EEEEEECBTTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEE
T ss_pred EEEEEEECCCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence 468889988999999998766566799999999999999988999999999999999999999999999886 567999
Q ss_pred EEEE
Q psy12578 143 VVRY 146 (172)
Q Consensus 143 ~v~r 146 (172)
+|.|
T Consensus 82 ~v~R 85 (85)
T 2i04_A 82 ELCR 85 (85)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8864
No 35
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.70 E-value=2.2e-16 Score=106.50 Aligned_cols=87 Identities=31% Similarity=0.555 Sum_probs=76.4
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCC--CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ- 137 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~--~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~- 137 (172)
....+.|++.++ .||||++.++.+. ..+++|..|.+++||+++|+|++||+|++|||+++.+++|.+++.+|+...
T Consensus 13 ~~~~~~v~l~k~-~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~ 91 (109)
T 1wi4_A 13 DPAFRVITVTKE-TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKL 91 (109)
T ss_dssp CTTEEEEEECCS-SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCC
T ss_pred CCcEEEEEEeCC-CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcccc
Confidence 456688999886 8999999987653 336999999999999999999999999999999999999999999999876
Q ss_pred ---CeEEEEEEECC
Q psy12578 138 ---RSVKLVVRYTP 148 (172)
Q Consensus 138 ---~~v~l~v~r~~ 148 (172)
..+.+++.|..
T Consensus 92 r~~~~~~l~v~R~~ 105 (109)
T 1wi4_A 92 RSESPWEIAFIRSG 105 (109)
T ss_dssp SSSSCEEEEEECCC
T ss_pred CCCceEEEEEEeCC
Confidence 44999998875
No 36
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.70 E-value=2.8e-16 Score=105.15 Aligned_cols=89 Identities=38% Similarity=0.672 Sum_probs=79.1
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCC------CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 134 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~------~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~ 134 (172)
.....+++|.+...+|||++.++.+. ..+++|..|.++|||+++|.|++||+|++|||+++.++++.++..+++
T Consensus 5 ~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~ 84 (105)
T 1wha_A 5 SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLT 84 (105)
T ss_dssp CCEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHT
T ss_pred CCeeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 34567889999999999999987652 458999999999999999889999999999999999999999999999
Q ss_pred hCCCeEEEEEEECCc
Q psy12578 135 QAQRSVKLVVRYTPK 149 (172)
Q Consensus 135 ~~~~~v~l~v~r~~~ 149 (172)
..+..+.|+|.|++.
T Consensus 85 ~~g~~v~l~v~R~~~ 99 (105)
T 1wha_A 85 AASPTIALLLEREAG 99 (105)
T ss_dssp SCCSCEEEEEEECCC
T ss_pred cCCCeEEEEEEECCC
Confidence 888889999999863
No 37
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.69 E-value=6.8e-17 Score=105.39 Aligned_cols=86 Identities=29% Similarity=0.468 Sum_probs=74.4
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
..||+|+|.++..+|||++.+... ..+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.
T Consensus 2 ~~pr~v~l~k~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~ 79 (91)
T 2vsp_A 2 MKPKLCRLAKGENGYGFHLNAIRG-LPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVT 79 (91)
T ss_dssp CCEEEEEEECBTTBTSCCCBCCTT-CSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEE
T ss_pred CCcEEEEEEeCCCcccEEEEeccC-CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence 468999999999999999987543 4578999999999999999 99999999999999999999999999998877899
Q ss_pred EEEEECCc
Q psy12578 142 LVVRYTPK 149 (172)
Q Consensus 142 l~v~r~~~ 149 (172)
|+|.|...
T Consensus 80 l~v~r~~~ 87 (91)
T 2vsp_A 80 LLVCGKKA 87 (91)
T ss_dssp EEEEC---
T ss_pred EEEEeCCc
Confidence 99988753
No 38
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.69 E-value=7.6e-16 Score=106.18 Aligned_cols=87 Identities=22% Similarity=0.389 Sum_probs=78.8
Q ss_pred CCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 63 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 63 ~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
.++++++.+.. .+|||++.++.+...+++|..|.++|||+++|+|+.||+|++|||.++.++++.++..+++..++.+.
T Consensus 19 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~ 98 (125)
T 3hpk_A 19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT 98 (125)
T ss_dssp EEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred CCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence 56788898865 78999999987766789999999999999999999999999999999999999999999999988899
Q ss_pred EEEEECCc
Q psy12578 142 LVVRYTPK 149 (172)
Q Consensus 142 l~v~r~~~ 149 (172)
|+|.|...
T Consensus 99 l~v~r~~~ 106 (125)
T 3hpk_A 99 IHYNKLQA 106 (125)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 99988543
No 39
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.69 E-value=6.4e-16 Score=101.89 Aligned_cols=87 Identities=32% Similarity=0.543 Sum_probs=77.5
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
..++|++.+...+|||++.++.+...+++|..|.+++||+++|.|++||+|++|||.++.++++.++..+++..+..+.|
T Consensus 5 ~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l 84 (97)
T 1n7e_A 5 IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL 84 (97)
T ss_dssp CEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred eEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 45778898888889999998765556899999999999999988999999999999999999999999999977778999
Q ss_pred EEEECCc
Q psy12578 143 VVRYTPK 149 (172)
Q Consensus 143 ~v~r~~~ 149 (172)
+|.|...
T Consensus 85 ~v~R~~~ 91 (97)
T 1n7e_A 85 KIKKQTD 91 (97)
T ss_dssp EEECCCC
T ss_pred EEEeCCC
Confidence 9988763
No 40
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.69 E-value=7.3e-16 Score=106.04 Aligned_cols=87 Identities=30% Similarity=0.535 Sum_probs=78.6
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS 139 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~ 139 (172)
...++|+|.++..||||++.++.+...+++|..|.++++|+++|.|++||+|++|||+.+.++++.++..+|+.. +..
T Consensus 18 ~~~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~ 97 (123)
T 1ueq_A 18 GTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQS 97 (123)
T ss_dssp SEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCE
T ss_pred CcEEEEEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence 355678899999999999998776667899999999999999988999999999999999999999999999984 577
Q ss_pred EEEEEEECC
Q psy12578 140 VKLVVRYTP 148 (172)
Q Consensus 140 v~l~v~r~~ 148 (172)
+.|+|.|..
T Consensus 98 v~l~v~R~~ 106 (123)
T 1ueq_A 98 VNLVLCRGY 106 (123)
T ss_dssp EEEEEEESC
T ss_pred EEEEEEeCC
Confidence 999999876
No 41
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.69 E-value=4.7e-16 Score=102.64 Aligned_cols=86 Identities=29% Similarity=0.490 Sum_probs=76.1
Q ss_pred CCEEEEEec-CCCCCCeEEeccCCCCC------CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12578 63 HPRVVELPK-TDEGLGFNVMGGKEQNS------PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135 (172)
Q Consensus 63 ~~~~v~l~~-~~~g~G~~l~~~~~~~~------~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 135 (172)
.+++++|.| ...+|||++.++.+... +++|..|.++|||+++|.|++||+|++|||+++.++++.++..+++.
T Consensus 5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~ 84 (98)
T 1ihj_A 5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE 84 (98)
T ss_dssp EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred eEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence 457899999 66899999988764332 79999999999999998899999999999999999999999999999
Q ss_pred CCCeEEEEEEECC
Q psy12578 136 AQRSVKLVVRYTP 148 (172)
Q Consensus 136 ~~~~v~l~v~r~~ 148 (172)
.+..+.|+|.|++
T Consensus 85 ~g~~v~l~v~R~g 97 (98)
T 1ihj_A 85 ADFKIELEIQTFD 97 (98)
T ss_dssp SCSEEEEEEEEC-
T ss_pred CCCeEEEEEEeCC
Confidence 8888999999875
No 42
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.68 E-value=1.1e-15 Score=102.97 Aligned_cols=91 Identities=29% Similarity=0.495 Sum_probs=80.7
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
....++|+|.++..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+
T Consensus 6 ~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 85 (110)
T 1um1_A 6 SGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG 85 (110)
T ss_dssp CCCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred CCcEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 45678899999999999999986543 357999999999999999889999999999999999999999999999988
Q ss_pred CeEEEEEEECCchh
Q psy12578 138 RSVKLVVRYTPKVL 151 (172)
Q Consensus 138 ~~v~l~v~r~~~~~ 151 (172)
..+.|+|.|.+...
T Consensus 86 ~~v~l~v~R~~~~~ 99 (110)
T 1um1_A 86 KKMRFLVAKSDVET 99 (110)
T ss_dssp SEEEEEEECCCHHH
T ss_pred CeEEEEEEeCCcce
Confidence 88999999987543
No 43
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5e-16 Score=106.37 Aligned_cols=88 Identities=39% Similarity=0.628 Sum_probs=79.7
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCC-----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~-----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 136 (172)
..++.|+|.+...+|||++.++.+. ..+++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++..
T Consensus 16 ~~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~ 95 (120)
T 2eno_A 16 VTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 95 (120)
T ss_dssp EEEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH
T ss_pred CceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 3668899999999999999987653 45899999999999999988999999999999999999999999999988
Q ss_pred CCeEEEEEEECCc
Q psy12578 137 QRSVKLVVRYTPK 149 (172)
Q Consensus 137 ~~~v~l~v~r~~~ 149 (172)
+..+.|+|.|++.
T Consensus 96 g~~v~l~v~R~~~ 108 (120)
T 2eno_A 96 GYAVSLRVQHRLQ 108 (120)
T ss_dssp CSEEEEEEEEEEE
T ss_pred CCeEEEEEEeCCc
Confidence 8889999998764
No 44
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.68 E-value=3.1e-16 Score=100.85 Aligned_cols=82 Identities=32% Similarity=0.511 Sum_probs=73.0
Q ss_pred EEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12578 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144 (172)
Q Consensus 65 ~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v 144 (172)
.+|++ +++.+|||++.++.+...+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..++.+.|+|
T Consensus 3 ~~v~l-~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 80 (85)
T 1rgw_A 3 YSVTL-TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL 80 (85)
T ss_dssp EEEEE-CCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEE
T ss_pred EEEEE-eCCCccCEEEEeccCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEE
Confidence 56777 45689999999877666689999999999999998 99999999999999999999999999988887899999
Q ss_pred EECC
Q psy12578 145 RYTP 148 (172)
Q Consensus 145 ~r~~ 148 (172)
.|+.
T Consensus 81 ~R~~ 84 (85)
T 1rgw_A 81 QKSK 84 (85)
T ss_dssp ESCC
T ss_pred EeCC
Confidence 8864
No 45
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.68 E-value=5.7e-16 Score=101.64 Aligned_cols=86 Identities=36% Similarity=0.546 Sum_probs=75.8
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
+..++.|+|.++..+|||++.++.. ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..++.+
T Consensus 3 p~~~r~v~l~~~~~~~G~~l~~~~~-~~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~ 80 (95)
T 3r68_A 3 PHQPRVVVIKKGSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQT 80 (95)
T ss_dssp CCCCEEEEEECBTTBCSCEEEEC---CCSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred CCCcEEEEEecCCCcccEEEEecCC-CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence 3578999999999999999987543 2479999999999999999 9999999999999999999999999999988888
Q ss_pred EEEEEECC
Q psy12578 141 KLVVRYTP 148 (172)
Q Consensus 141 ~l~v~r~~ 148 (172)
.+++.|..
T Consensus 81 ~~~~~r~~ 88 (95)
T 3r68_A 81 TLLVLDKE 88 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEECCc
Confidence 88776654
No 46
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.68 E-value=3.9e-16 Score=102.88 Aligned_cols=87 Identities=37% Similarity=0.671 Sum_probs=77.3
Q ss_pred CEEEEEecCCCCCCeEEeccCCC----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 64 PRVVELPKTDEGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 64 ~~~v~l~~~~~g~G~~l~~~~~~----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
...|++.++..+|||++.++.+. ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++..+..
T Consensus 4 ~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~ 83 (97)
T 2jil_A 4 TVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 83 (97)
T ss_dssp EEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSE
T ss_pred EEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 46788998889999999987542 35799999999999999988999999999999999999999999999998888
Q ss_pred EEEEEEECCch
Q psy12578 140 VKLVVRYTPKV 150 (172)
Q Consensus 140 v~l~v~r~~~~ 150 (172)
+.|+|.|++..
T Consensus 84 v~l~v~R~~~~ 94 (97)
T 2jil_A 84 AALLIEYDVSE 94 (97)
T ss_dssp EEEEEEEECCC
T ss_pred EEEEEEeCCCc
Confidence 99999997743
No 47
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=102.52 Aligned_cols=81 Identities=31% Similarity=0.542 Sum_probs=73.9
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
.+++|+|.++..||||++.+. .+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++..+..+.|
T Consensus 2 ~~r~v~l~~~~~g~G~~~~~~----~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l 76 (83)
T 2kv8_A 2 RVRSVEVARGRAGYGFTLSGQ----APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHM 76 (83)
T ss_dssp CEEEEEECCCSSCCSCBCCCS----SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEE
T ss_pred CcEEEEEEeCCCcccEEEEcC----CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 578999999999999999763 369999999999999999 999999999999999999999999999888778999
Q ss_pred EEEECC
Q psy12578 143 VVRYTP 148 (172)
Q Consensus 143 ~v~r~~ 148 (172)
+|.|++
T Consensus 77 ~v~R~~ 82 (83)
T 2kv8_A 77 VIAEGV 82 (83)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 998864
No 48
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.68 E-value=5.3e-16 Score=105.75 Aligned_cols=92 Identities=29% Similarity=0.531 Sum_probs=81.1
Q ss_pred ccCCCCCEEEEEecCC-CCCCeEEeccCCC---------CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHH
Q psy12578 58 SEGHAHPRVVELPKTD-EGLGFNVMGGKEQ---------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 127 (172)
Q Consensus 58 ~~~~~~~~~v~l~~~~-~g~G~~l~~~~~~---------~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~ 127 (172)
...+..+++|.|.+.. .+|||++.++.+. ..+++|..|.++|||+++|.|++||+|++|||.++.++++.
T Consensus 10 ~~~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~ 89 (117)
T 2ehr_A 10 FSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHS 89 (117)
T ss_dssp SSCBCCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHH
T ss_pred cccCCCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 3456788999999985 8999999987642 35899999999999999988999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEECCc
Q psy12578 128 KAVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 128 ~~~~~l~~~~~~v~l~v~r~~~ 149 (172)
+++.+++..+..+.|+|.|...
T Consensus 90 ~~~~~~~~~g~~v~l~v~r~~~ 111 (117)
T 2ehr_A 90 EAVEAIKNAGNPVVFIVQSLSS 111 (117)
T ss_dssp HHHHHHHTSCSSEEEEECCBSC
T ss_pred HHHHHHHcCCCeEEEEEEECCC
Confidence 9999999988889999977653
No 49
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.68 E-value=7.9e-16 Score=105.96 Aligned_cols=91 Identities=31% Similarity=0.545 Sum_probs=81.2
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCC-CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~-~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
...++|.|.++..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..+..+
T Consensus 24 ~~~~~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v 103 (124)
T 2daz_A 24 GELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKV 103 (124)
T ss_dssp SEEEEEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEE
T ss_pred CceEEEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 4567899999999999999987653 358999999999999999889999999999999999999999999999988899
Q ss_pred EEEEEECCchhH
Q psy12578 141 KLVVRYTPKVLE 152 (172)
Q Consensus 141 ~l~v~r~~~~~~ 152 (172)
.|+|.|.+...+
T Consensus 104 ~l~v~R~~~~~~ 115 (124)
T 2daz_A 104 KLVFIRNEDAVN 115 (124)
T ss_dssp EEEEEECTTHHH
T ss_pred EEEEEeCCCccc
Confidence 999999875543
No 50
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5e-16 Score=103.64 Aligned_cols=89 Identities=30% Similarity=0.531 Sum_probs=79.3
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCC--CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~--~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
....+.+.|.+...||||++.++.+. ..+++|..|.+++||+++|.|++||+|++|||..+.++++.++..+++..+.
T Consensus 9 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~ 88 (104)
T 2djt_A 9 ASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGP 88 (104)
T ss_dssp CCCCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCS
T ss_pred CCceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 45678999999999999999986543 4579999999999999998899999999999999999999999999988888
Q ss_pred eEEEEEEECCc
Q psy12578 139 SVKLVVRYTPK 149 (172)
Q Consensus 139 ~v~l~v~r~~~ 149 (172)
.+.|+|.|++.
T Consensus 89 ~v~l~v~R~g~ 99 (104)
T 2djt_A 89 QLHLVIRRPLS 99 (104)
T ss_dssp EEEEEECCCCC
T ss_pred eEEEEEEECCC
Confidence 89999988764
No 51
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.5e-16 Score=101.69 Aligned_cols=86 Identities=30% Similarity=0.458 Sum_probs=76.5
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
..++.|++ ++..+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++..+..+.
T Consensus 7 ~~~~~v~l-~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~ 84 (94)
T 2eeg_A 7 GMPHSVTL-RGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLT 84 (94)
T ss_dssp CCCEEEEE-CCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEE
T ss_pred CceEEEEE-eCCCccCEEEECccCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence 45688888 45579999999988767789999999999999999 99999999999999999999999999988877899
Q ss_pred EEEEECCc
Q psy12578 142 LVVRYTPK 149 (172)
Q Consensus 142 l~v~r~~~ 149 (172)
|+|.|++.
T Consensus 85 l~v~R~g~ 92 (94)
T 2eeg_A 85 LSVSSGPS 92 (94)
T ss_dssp EEEECCSS
T ss_pred EEEEeCCC
Confidence 99988763
No 52
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.68 E-value=1e-15 Score=106.58 Aligned_cols=87 Identities=34% Similarity=0.546 Sum_probs=77.2
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCCC------------CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHH
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQN------------SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 128 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~~------------~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~ 128 (172)
..+++|+|.|.. .||||+|.++.... .+++|..|.++|||+++| |+.||+|++|||.++.++++.+
T Consensus 26 ~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~ 104 (132)
T 3l4f_D 26 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQ 104 (132)
T ss_dssp CCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHH
T ss_pred CCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence 467899999854 89999999976421 269999999999999999 9999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEECCc
Q psy12578 129 AVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 129 ~~~~l~~~~~~v~l~v~r~~~ 149 (172)
++.+++..+..+.|+|.+...
T Consensus 105 ~~~~l~~~g~~v~l~v~~~~~ 125 (132)
T 3l4f_D 105 VVNMIRQGGNTLMVKVVMVTR 125 (132)
T ss_dssp HHHHHHHTTTEEEEEEECCCC
T ss_pred HHHHHHcCCCEEEEEEEECCC
Confidence 999999998899999987754
No 53
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=6.9e-16 Score=102.65 Aligned_cols=86 Identities=35% Similarity=0.511 Sum_probs=77.4
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
...+++|+|.++..+|||++.++.+ ..+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++..+..+
T Consensus 4 ~~~~r~v~l~k~~~g~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v 81 (102)
T 2d90_A 4 GSSGRVVVIKKGSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQT 81 (102)
T ss_dssp CSSSEEEEEECCSSSSSCEEEECSS-SSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEE
T ss_pred CCCCEEEEEeeCCCCccEEEEeecC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence 4578999999999999999997443 4579999999999999999 9999999999999999999999999999888889
Q ss_pred EEEEEECC
Q psy12578 141 KLVVRYTP 148 (172)
Q Consensus 141 ~l~v~r~~ 148 (172)
.|+|.|..
T Consensus 82 ~l~v~r~~ 89 (102)
T 2d90_A 82 TLLVLDKE 89 (102)
T ss_dssp EEEECSTT
T ss_pred EEEEEECC
Confidence 99997764
No 54
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.67 E-value=3.6e-16 Score=106.69 Aligned_cols=89 Identities=27% Similarity=0.537 Sum_probs=78.2
Q ss_pred CCEEEEEecCC-------CCCCeEEeccCCC-----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHH
Q psy12578 63 HPRVVELPKTD-------EGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAV 130 (172)
Q Consensus 63 ~~~~v~l~~~~-------~g~G~~l~~~~~~-----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~ 130 (172)
..+.+++.+.. .+|||+|.++.+. ..+++|..|.++|||+++|+|++||+|++|||.++.++++.++.
T Consensus 12 ~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~ 91 (117)
T 1ujd_A 12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ 91 (117)
T ss_dssp CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred ceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHH
Confidence 45778888876 7999999987642 23699999999999999998999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEECCchh
Q psy12578 131 ELLKQAQRSVKLVVRYTPKVL 151 (172)
Q Consensus 131 ~~l~~~~~~v~l~v~r~~~~~ 151 (172)
.+++..+..+.|+|.|++..+
T Consensus 92 ~~l~~~~~~v~l~v~R~~~~~ 112 (117)
T 1ujd_A 92 SIISQQSGEAEICVRLDLNMS 112 (117)
T ss_dssp HHHSCCSSCEEEEEESSCCCC
T ss_pred HHHhcCCCEEEEEEEECCccc
Confidence 999998888999999987543
No 55
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.67 E-value=3.4e-16 Score=105.35 Aligned_cols=86 Identities=28% Similarity=0.453 Sum_probs=76.0
Q ss_pred CCEEEEEecC-CCCCCeEEeccCCC--CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC---
Q psy12578 63 HPRVVELPKT-DEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--- 136 (172)
Q Consensus 63 ~~~~v~l~~~-~~g~G~~l~~~~~~--~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--- 136 (172)
.+++|+|.+. ..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..
T Consensus 5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~ 84 (108)
T 3cbz_A 5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK 84 (108)
T ss_dssp CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS
T ss_pred eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC
Confidence 5688999875 48999999987543 46799999999999999999999999999999999999999999999877
Q ss_pred CCeEEEEEEECC
Q psy12578 137 QRSVKLVVRYTP 148 (172)
Q Consensus 137 ~~~v~l~v~r~~ 148 (172)
++.+.|+|.|..
T Consensus 85 ~~~v~l~v~R~~ 96 (108)
T 3cbz_A 85 PGPIVLTVAKSG 96 (108)
T ss_dssp SSCEEEEEECCC
T ss_pred CCeEEEEEEeCC
Confidence 457999998875
No 56
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.67 E-value=1.9e-15 Score=98.38 Aligned_cols=85 Identities=33% Similarity=0.465 Sum_probs=74.5
Q ss_pred CCCEEEEEecCC--CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 62 AHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 62 ~~~~~v~l~~~~--~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
...+.++|.+.. .+|||++.++.. ..+++|..|.++|||+++| |++||+|++|||+.+.++++.++..+++..+..
T Consensus 5 ~~~~~v~l~k~~~~~~~G~~~~~~~~-~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~ 82 (91)
T 1m5z_A 5 VELHKVTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNK 82 (91)
T ss_dssp CEEEEEEEECCTTCSSSSEEEEECTT-SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTE
T ss_pred cceEEEEEEECCCCCCccEEEEeccC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence 355778888865 589999988654 3579999999999999999 999999999999999999999999999888888
Q ss_pred EEEEEEECC
Q psy12578 140 VKLVVRYTP 148 (172)
Q Consensus 140 v~l~v~r~~ 148 (172)
+.|+|.|+|
T Consensus 83 v~l~v~R~p 91 (91)
T 1m5z_A 83 LDLVISRNP 91 (91)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEeCc
Confidence 999998864
No 57
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.67 E-value=8.1e-16 Score=103.84 Aligned_cols=88 Identities=36% Similarity=0.708 Sum_probs=78.9
Q ss_pred CCCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 60 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 60 ~~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
.+..++.|.+.+...+|||.+.++. ..+++|..|.+++||+++|+|+.||+|++|||..+.++++.++..+++..+..
T Consensus 12 ~~~~~~~v~l~~~~~~lG~~l~~~~--~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~ 89 (111)
T 2dlu_A 12 CWGHVEEVELINDGSGLGFGIVGGK--TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNS 89 (111)
T ss_dssp SCSEEEEEEEECCSSCCCEEEECCS--SSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSE
T ss_pred CcCceEEEEEEeCCCccCEEEeccC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence 3456788999999999999999754 35799999999999999988999999999999999999999999999988888
Q ss_pred EEEEEEECCc
Q psy12578 140 VKLVVRYTPK 149 (172)
Q Consensus 140 v~l~v~r~~~ 149 (172)
+.|+|.|.+.
T Consensus 90 v~l~v~R~~~ 99 (111)
T 2dlu_A 90 VRMLVARDPA 99 (111)
T ss_dssp EEEEEEESCT
T ss_pred EEEEEEeCCC
Confidence 9999998764
No 58
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.67 E-value=1.2e-15 Score=98.52 Aligned_cols=78 Identities=26% Similarity=0.506 Sum_probs=70.4
Q ss_pred cCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12578 71 KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 71 ~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 149 (172)
++..+|||++.++.+...+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|+|.|++.
T Consensus 9 ~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~ 86 (87)
T 2pa1_A 9 AGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRITS 86 (87)
T ss_dssp CSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEECCC
T ss_pred CCCCccCEEEecccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecCC
Confidence 35589999999877656689999999999999999 9999999999999999999999999999888779999999763
No 59
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.67 E-value=9.1e-16 Score=102.76 Aligned_cols=89 Identities=34% Similarity=0.540 Sum_probs=77.0
Q ss_pred CCCEEEEEecCCCCCCeEEeccCC---CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~---~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
....+|++ +...+|||++.++.+ ...+++|..|.++|||+++|+|++||+|++|||.++.++++.++..+++..+.
T Consensus 10 ~~~~~v~l-~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~ 88 (106)
T 3axa_A 10 PEIITVTL-KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS 88 (106)
T ss_dssp CCEEEEEE-ECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred ceEEEEEE-CCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 35566777 788999999987542 24479999999999999999899999999999999999999999999999888
Q ss_pred eEEEEEEECCchh
Q psy12578 139 SVKLVVRYTPKVL 151 (172)
Q Consensus 139 ~v~l~v~r~~~~~ 151 (172)
.+.|+|.|....+
T Consensus 89 ~v~l~v~R~~~~~ 101 (106)
T 3axa_A 89 VVTLEVAKQGAIR 101 (106)
T ss_dssp EEEEEEECCCSSC
T ss_pred eEEEEEEeCCccc
Confidence 8999999987543
No 60
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.66 E-value=9.7e-16 Score=99.41 Aligned_cols=82 Identities=23% Similarity=0.431 Sum_probs=72.9
Q ss_pred CEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 64 PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADR-HGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 64 ~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~-~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
.|.|+|.|.. .+|||++.+.. ..+++|..|.++|||++ +| |++||+|++|||+++.+++++++..+++..++.+.
T Consensus 2 ~r~V~l~K~~~~~lG~~i~~~~--~~~~~I~~V~~gspA~~~ag-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~ 78 (88)
T 1kwa_A 2 SRLVQFQKNTDEPMGITLKMNE--LNHCIVARIMHGGMIHRQGT-LHVGDEIREINGISVANQTVEQLQKMLREMRGSIT 78 (88)
T ss_dssp CEEEEEEECSSSCCCEEEECSC--GGGEEEEEECTTSHHHHHTC-CCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEE
T ss_pred eEEEEEEeCCCCceeEEEEeCC--CCCEEEEEECCCCHHHHcCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEE
Confidence 5789999985 89999998732 34699999999999999 55 99999999999999999999999999999877899
Q ss_pred EEEEECC
Q psy12578 142 LVVRYTP 148 (172)
Q Consensus 142 l~v~r~~ 148 (172)
|+|.|..
T Consensus 79 l~v~r~~ 85 (88)
T 1kwa_A 79 FKIVPSY 85 (88)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9998765
No 61
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.66 E-value=7.9e-16 Score=103.39 Aligned_cols=90 Identities=38% Similarity=0.640 Sum_probs=79.9
Q ss_pred CCCCEEEEEecCCCCCCeEEe-----ccCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12578 61 HAHPRVVELPKTDEGLGFNVM-----GGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 132 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~-----~~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~ 132 (172)
....++|+|.+++.+|||++. ++.+. ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+
T Consensus 7 ~~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~ 86 (108)
T 1q7x_A 7 PGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET 86 (108)
T ss_dssp SSSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred CCcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 456788999999999999999 65542 3579999999999999998899999999999999999999999999
Q ss_pred HHhCCCeEEEEEEECCch
Q psy12578 133 LKQAQRSVKLVVRYTPKV 150 (172)
Q Consensus 133 l~~~~~~v~l~v~r~~~~ 150 (172)
++..+..+.|+|.|++..
T Consensus 87 ~~~~g~~v~l~v~R~~~~ 104 (108)
T 1q7x_A 87 LRNTGQVVHLLLEKGQSP 104 (108)
T ss_dssp HHHTTSEEEEEEECCCCS
T ss_pred HHcCCCeEEEEEEeCCcc
Confidence 999888899999988643
No 62
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=102.38 Aligned_cols=82 Identities=39% Similarity=0.656 Sum_probs=70.7
Q ss_pred EEecCCCCCCeEEeccCCCC-----CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 68 ELPKTDEGLGFNVMGGKEQN-----SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 68 ~l~~~~~g~G~~l~~~~~~~-----~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
.+..+..+|||++.+|.+.. .+++|..|.++|||+++|+|++||+|++|||.++.++++.++..+++..++.+.|
T Consensus 7 ~~~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l 86 (106)
T 4amh_A 7 LVPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYL 86 (106)
T ss_dssp -----CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEE
T ss_pred cCCCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Confidence 34456689999999987643 3799999999999999999999999999999999999999999999999889999
Q ss_pred EEEECCc
Q psy12578 143 VVRYTPK 149 (172)
Q Consensus 143 ~v~r~~~ 149 (172)
+|.|+..
T Consensus 87 ~v~R~~~ 93 (106)
T 4amh_A 87 KVAKPGS 93 (106)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 9999864
No 63
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.66 E-value=1.1e-15 Score=110.86 Aligned_cols=86 Identities=29% Similarity=0.538 Sum_probs=76.2
Q ss_pred CCCEEEEEecCCCCCCeEEec---cCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12578 62 AHPRVVELPKTDEGLGFNVMG---GKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~---~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 135 (172)
.....|+|.++..||||+|.+ +.+. ..+++|..|.+||||+++|+|++||+|++|||.++.++++.+++.+|+.
T Consensus 79 ~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~ 158 (170)
T 3egg_C 79 LELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 158 (170)
T ss_dssp SEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH
T ss_pred ceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 345678899988999999998 3322 3479999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEEC
Q psy12578 136 AQRSVKLVVRYT 147 (172)
Q Consensus 136 ~~~~v~l~v~r~ 147 (172)
.+..|.|+|.|.
T Consensus 159 ~g~~v~L~V~R~ 170 (170)
T 3egg_C 159 TKGRVRFMIGRE 170 (170)
T ss_dssp CCSEEEEEEEEC
T ss_pred CCCEEEEEEEeC
Confidence 988999999874
No 64
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.66 E-value=2e-15 Score=98.79 Aligned_cols=83 Identities=31% Similarity=0.552 Sum_probs=74.1
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
...+|+|.+.++..+|||.+.+ ..+++|..|.+++||+++| |++||+|++|||+++.++++.+++..++ .+..+
T Consensus 6 ~~~~r~v~l~~~~~~~G~~l~~----~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v 79 (93)
T 2dls_A 6 SGVQRCVIIQKDQHGFGFTVSG----DRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYV 79 (93)
T ss_dssp CCCEEEEEEECSSSSCCEEEEC----SSSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEE
T ss_pred CCCCEEEEEEeCCCceeEEEeC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEE
Confidence 4567899999999999999986 3479999999999999999 9999999999999999999988888886 57789
Q ss_pred EEEEEECCc
Q psy12578 141 KLVVRYTPK 149 (172)
Q Consensus 141 ~l~v~r~~~ 149 (172)
.|+|.|++.
T Consensus 80 ~l~v~R~~~ 88 (93)
T 2dls_A 80 ALTLLGSSS 88 (93)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 999998763
No 65
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=7.6e-16 Score=106.60 Aligned_cols=89 Identities=33% Similarity=0.593 Sum_probs=79.3
Q ss_pred CCCCEEEEEecCC-CCCCeEEeccCCCC---CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCC-CCCHHHHHHHHHh
Q psy12578 61 HAHPRVVELPKTD-EGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE-GEDHGKAVELLKQ 135 (172)
Q Consensus 61 ~~~~~~v~l~~~~-~g~G~~l~~~~~~~---~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~-~~~~~~~~~~l~~ 135 (172)
+..++.|+|.+.. .+|||++.++.+.. .+++|..|.+++||+++|+|++||+|++|||.++. ++++.+++.+++.
T Consensus 23 ~~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~ 102 (128)
T 2db5_A 23 GRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ 102 (128)
T ss_dssp TCEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH
T ss_pred cCceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc
Confidence 5577889999986 79999998866432 37999999999999999999999999999999997 9999999999999
Q ss_pred CCCeEEEEEEECCc
Q psy12578 136 AQRSVKLVVRYTPK 149 (172)
Q Consensus 136 ~~~~v~l~v~r~~~ 149 (172)
.+..+.|+|.|.+.
T Consensus 103 ~~~~v~l~v~r~~~ 116 (128)
T 2db5_A 103 TTGSLRLIVAREPV 116 (128)
T ss_dssp CCSEEEEEEEECCC
T ss_pred CCCeEEEEEEcCCC
Confidence 88889999999864
No 66
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.66 E-value=2.7e-15 Score=97.85 Aligned_cols=85 Identities=33% Similarity=0.580 Sum_probs=76.1
Q ss_pred CCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 63 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 63 ~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
..++|+|.+.. .+|||++.++.+ ..+++|..|.++|||+++|.|++||+|++|||+++.+.++.++..+++..++.+.
T Consensus 4 ~~~~v~l~k~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~ 82 (92)
T 2qg1_A 4 DTLTIGLQKKPGKGLGLSIVGKRN-DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVT 82 (92)
T ss_dssp CEEEEEEECCTTSCCSEEEECCSS-SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred eEEEEEEEeCCCCcccEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence 45789999864 899999998654 4579999999999999998899999999999999999999999999998888899
Q ss_pred EEEEECC
Q psy12578 142 LVVRYTP 148 (172)
Q Consensus 142 l~v~r~~ 148 (172)
|+|.|..
T Consensus 83 l~v~R~~ 89 (92)
T 2qg1_A 83 LEVGRIS 89 (92)
T ss_dssp EEEECCC
T ss_pred EEEEccc
Confidence 9998875
No 67
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.66 E-value=1.2e-15 Score=104.09 Aligned_cols=89 Identities=36% Similarity=0.516 Sum_probs=78.8
Q ss_pred CCCCEEEEEecCC-CCCCeEEeccCCCC-CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 61 HAHPRVVELPKTD-EGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 61 ~~~~~~v~l~~~~-~g~G~~l~~~~~~~-~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
...++.|.|.+.. .+|||++.++.+.. .+++|..|.+++||+++|+|++||+|++|||+++.+++++++..+++..+.
T Consensus 13 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~ 92 (117)
T 1v62_A 13 ASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISE 92 (117)
T ss_dssp SSSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSS
T ss_pred CCCcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 3567899999987 79999999865433 349999999999999999999999999999999999999999999998888
Q ss_pred eEEEEEEECCc
Q psy12578 139 SVKLVVRYTPK 149 (172)
Q Consensus 139 ~v~l~v~r~~~ 149 (172)
.+.|+|.|.+.
T Consensus 93 ~v~l~v~r~~~ 103 (117)
T 1v62_A 93 KVRLEILPVPQ 103 (117)
T ss_dssp EEEEEECCBTT
T ss_pred eEEEEEEECCC
Confidence 89999988763
No 68
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.66 E-value=2.3e-15 Score=102.84 Aligned_cols=93 Identities=39% Similarity=0.713 Sum_probs=82.0
Q ss_pred cCCCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 59 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 59 ~~~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
.....+++|+|.+...||||++.++.+ ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++..+.
T Consensus 10 ~~~~~~~~v~l~k~~~glG~~l~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~ 88 (119)
T 1tp5_A 10 DIPREPRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQ 88 (119)
T ss_dssp CCCCSCEEEEEECTTSCCCEEEEECGG-GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCS
T ss_pred CCCCccEEEEEEECCCCccEEEecCCC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 335688999999999999999998643 3579999999999999998899999999999999999999999999988888
Q ss_pred eEEEEEEECCchhH
Q psy12578 139 SVKLVVRYTPKVLE 152 (172)
Q Consensus 139 ~v~l~v~r~~~~~~ 152 (172)
.+.|+|.|.+..+.
T Consensus 89 ~v~l~v~r~~~~~~ 102 (119)
T 1tp5_A 89 TVTIIAQYKPEEYS 102 (119)
T ss_dssp EEEEEEEECHHHHH
T ss_pred eEEEEEEECCchhc
Confidence 89999999875543
No 69
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.66 E-value=9.6e-16 Score=106.31 Aligned_cols=88 Identities=28% Similarity=0.451 Sum_probs=78.3
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS 139 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~ 139 (172)
.....|+|.++..||||++.++.+...+++|..|.++|+|+++|.|+.||+|++|||.++.++++.++..+++.. +..
T Consensus 17 g~~~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~ 96 (129)
T 2kpk_A 17 GKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS 96 (129)
T ss_dssp SEEEEEEEEECSSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEE
T ss_pred CcEEEEEEEECCCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence 355678899988999999998765556799999999999999999999999999999999999999999999987 556
Q ss_pred EEEEEEECCc
Q psy12578 140 VKLVVRYTPK 149 (172)
Q Consensus 140 v~l~v~r~~~ 149 (172)
+.|+|.|...
T Consensus 97 v~l~v~R~~~ 106 (129)
T 2kpk_A 97 VDLELCRGYP 106 (129)
T ss_dssp EEEEEEECSC
T ss_pred EEEEEEeCCC
Confidence 9999998863
No 70
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.66 E-value=7e-16 Score=103.54 Aligned_cols=88 Identities=28% Similarity=0.565 Sum_probs=77.3
Q ss_pred CCCEEEEEecCCCCCCeEEec---cCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12578 62 AHPRVVELPKTDEGLGFNVMG---GKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~---~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 135 (172)
...+.|.|.+...+|||++.+ +.+. ..+++|..|.++|||+++|+|++||+|++|||.++.++++.++..+++.
T Consensus 8 ~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~ 87 (107)
T 1wf8_A 8 LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN 87 (107)
T ss_dssp EEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence 355778899988999999998 3331 3479999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEECCc
Q psy12578 136 AQRSVKLVVRYTPK 149 (172)
Q Consensus 136 ~~~~v~l~v~r~~~ 149 (172)
.+..+.|+|.|...
T Consensus 88 ~~~~v~l~v~R~~~ 101 (107)
T 1wf8_A 88 TKGNVRFVIGREKP 101 (107)
T ss_dssp CCSEEEEEEEEECC
T ss_pred CCCeEEEEEEeCCC
Confidence 88889999988753
No 71
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.66 E-value=8.5e-16 Score=99.70 Aligned_cols=83 Identities=30% Similarity=0.450 Sum_probs=73.2
Q ss_pred EEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12578 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144 (172)
Q Consensus 65 ~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v 144 (172)
.++++. ++.+|||++.++.+...+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..+..+.|+|
T Consensus 5 ~~v~~~-~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v 82 (89)
T 2q3g_A 5 FKVVLE-GPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGL 82 (89)
T ss_dssp EEEEEE-SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEE
T ss_pred EEEEEc-CCCcccEEEECcCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEE
Confidence 456665 4589999999877666679999999999999999 99999999999999999999999999998888899999
Q ss_pred EECCc
Q psy12578 145 RYTPK 149 (172)
Q Consensus 145 ~r~~~ 149 (172)
.|+..
T Consensus 83 ~R~~~ 87 (89)
T 2q3g_A 83 SRAIT 87 (89)
T ss_dssp EEECC
T ss_pred EeCCC
Confidence 88753
No 72
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=105.60 Aligned_cols=90 Identities=34% Similarity=0.592 Sum_probs=79.8
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCC-CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~-~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
+...+.+++.+...+|||++.++.+.. .+++|..|.+++||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus 15 ~~~~~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~ 94 (116)
T 2dm8_A 15 PGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK 94 (116)
T ss_dssp TTSCEEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSE
T ss_pred CCCEEEEEEEECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence 345688999999999999999866433 5899999999999999988999999999999999999999999999988888
Q ss_pred EEEEEEECCch
Q psy12578 140 VKLVVRYTPKV 150 (172)
Q Consensus 140 v~l~v~r~~~~ 150 (172)
+.|+|.|.+..
T Consensus 95 v~l~v~R~~~~ 105 (116)
T 2dm8_A 95 VRLVVYRDEAH 105 (116)
T ss_dssp EEEEEECCSSC
T ss_pred EEEEEEeCCcc
Confidence 99999988754
No 73
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.65 E-value=8.1e-16 Score=104.77 Aligned_cols=90 Identities=36% Similarity=0.581 Sum_probs=79.5
Q ss_pred CCCCEEEEEecCC-CCCCeEEeccCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCC-CCCHHHHHHHHHh
Q psy12578 61 HAHPRVVELPKTD-EGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE-GEDHGKAVELLKQ 135 (172)
Q Consensus 61 ~~~~~~v~l~~~~-~g~G~~l~~~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~-~~~~~~~~~~l~~ 135 (172)
...++.|+|.+.. .+|||++.++... ..+++|..|.++|||+++|.|++||+|++|||.++. ++++.++..+++.
T Consensus 18 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~ 97 (117)
T 2o2t_A 18 GRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK 97 (117)
T ss_dssp TSCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc
Confidence 3578999999974 8999999986532 347999999999999999989999999999999998 8999999999999
Q ss_pred CCCeEEEEEEECCch
Q psy12578 136 AQRSVKLVVRYTPKV 150 (172)
Q Consensus 136 ~~~~v~l~v~r~~~~ 150 (172)
.+..+.|+|.|++..
T Consensus 98 ~~~~v~l~v~R~~~~ 112 (117)
T 2o2t_A 98 AKDTVQLVIARGSLP 112 (117)
T ss_dssp CCSEEEEEEESSCCG
T ss_pred CCCEEEEEEEeCCcc
Confidence 888899999998754
No 74
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.2e-16 Score=102.93 Aligned_cols=87 Identities=30% Similarity=0.483 Sum_probs=77.8
Q ss_pred CCCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 60 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 60 ~~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
.+..+|+|+|.|+..+|||++.+... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..+..
T Consensus 5 ~~~~~r~v~l~k~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 82 (106)
T 2eei_A 5 SSGQPRLCYLVKEGGSYGFSLKTVQG-KKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGSR 82 (106)
T ss_dssp CCSSSEEEEEECCSSSCSCCEECCSS-CCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHCSE
T ss_pred CCCCCEEEEEEECCCCCCEEEEeccC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence 35688999999998999999987543 4579999999999999999 999999999999999999999999999888888
Q ss_pred EEEEEEECC
Q psy12578 140 VKLVVRYTP 148 (172)
Q Consensus 140 v~l~v~r~~ 148 (172)
+.|+|.|..
T Consensus 83 v~l~v~r~~ 91 (106)
T 2eei_A 83 VMFLLVDKE 91 (106)
T ss_dssp EEEEECCTT
T ss_pred EEEEEEcCc
Confidence 999998765
No 75
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.65 E-value=1.4e-15 Score=102.00 Aligned_cols=86 Identities=30% Similarity=0.532 Sum_probs=76.7
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcC-CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC-
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHG-GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR- 138 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G-~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~- 138 (172)
...+.++|.+.. .+|||++.++.+...+++|..|.++|||+++| +|++||+|++|||.++.++++.++..+++..+.
T Consensus 16 ~~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~ 95 (107)
T 3nfk_A 16 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCER 95 (107)
T ss_dssp CCCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGS
T ss_pred CCEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhcccc
Confidence 456889998877 89999999877655679999999999999998 599999999999999999999999999998765
Q ss_pred ---eEEEEEEEC
Q psy12578 139 ---SVKLVVRYT 147 (172)
Q Consensus 139 ---~v~l~v~r~ 147 (172)
.+.|+|.|+
T Consensus 96 ~~~~v~l~v~r~ 107 (107)
T 3nfk_A 96 HSGELMLLVRPN 107 (107)
T ss_dssp BTTBEEEEEECC
T ss_pred CCcEEEEEEEcC
Confidence 799999774
No 76
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.65 E-value=3.7e-15 Score=97.80 Aligned_cols=85 Identities=25% Similarity=0.439 Sum_probs=75.5
Q ss_pred CEEEEEecCC--CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 64 PRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 64 ~~~v~l~~~~--~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
...|.|.|.. .+|||++.++.+ ..+++|..|.++|||+++|.|++||+|++|||.++.+.++.++...++..+..+.
T Consensus 4 ~~~v~l~k~~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~ 82 (95)
T 2vwr_A 4 ILQVALHKRDSGEQLGIKLVRRTD-EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVN 82 (95)
T ss_dssp EEEEEEECSSTTCCCCEEEEECSS-SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred EEEEEEEECCCCCcccEEEEeccC-CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence 4678898853 689999987654 4579999999999999998899999999999999999999999999998888899
Q ss_pred EEEEECCc
Q psy12578 142 LVVRYTPK 149 (172)
Q Consensus 142 l~v~r~~~ 149 (172)
|+|.|.+.
T Consensus 83 l~v~R~~~ 90 (95)
T 2vwr_A 83 LTIARPGK 90 (95)
T ss_dssp EEEEEESC
T ss_pred EEEEcCCc
Confidence 99998764
No 77
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.65 E-value=3e-15 Score=100.85 Aligned_cols=88 Identities=35% Similarity=0.598 Sum_probs=77.5
Q ss_pred CCCEEEEEecCCCCCCeEEeccCC------CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKE------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~------~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 135 (172)
.....+.+.+...+|||++.++.+ ...+++|..|.+++||+++| |++||+|++|||+.+.+.++.++...++.
T Consensus 14 ~~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~ 92 (110)
T 1x5q_A 14 EEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRG 92 (110)
T ss_dssp CEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred cceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhC
Confidence 455678888888999999997654 34679999999999999999 99999999999999999999999988888
Q ss_pred CCCeEEEEEEECCch
Q psy12578 136 AQRSVKLVVRYTPKV 150 (172)
Q Consensus 136 ~~~~v~l~v~r~~~~ 150 (172)
.+..+.|+|.|++..
T Consensus 93 ~g~~v~l~v~R~g~~ 107 (110)
T 1x5q_A 93 AGTAVQMRVWRESGP 107 (110)
T ss_dssp CCSEEEEEEEECSSC
T ss_pred CCCeEEEEEEECCcc
Confidence 888899999998753
No 78
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.64 E-value=3.5e-15 Score=98.18 Aligned_cols=86 Identities=36% Similarity=0.623 Sum_probs=75.8
Q ss_pred CCEEEEEecCCCCCCeEEeccCC------CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKE------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~------~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 136 (172)
....+.+.+...+|||++.++.+ ...+++|..|.++|||+++| |++||+|++|||.++.++++.++...++..
T Consensus 3 ~~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~ 81 (97)
T 2w4f_A 3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA 81 (97)
T ss_dssp CEEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred eEEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence 34678888888999999997654 24679999999999999999 999999999999999999998888888888
Q ss_pred CCeEEEEEEECCc
Q psy12578 137 QRSVKLVVRYTPK 149 (172)
Q Consensus 137 ~~~v~l~v~r~~~ 149 (172)
+..+.|+|.|++.
T Consensus 82 g~~v~l~v~R~g~ 94 (97)
T 2w4f_A 82 GTAVQMRVWRERE 94 (97)
T ss_dssp CSEEEEEEECCSS
T ss_pred CCeEEEEEEeCCc
Confidence 8889999999874
No 79
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.64 E-value=1.9e-15 Score=98.44 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=74.2
Q ss_pred CEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12578 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 143 (172)
Q Consensus 64 ~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 143 (172)
++.+.+. ++.+|||++.++.+...+++|..|.++|||+++| |++||+|++|||.++.++.+.++..+++..+..+.|+
T Consensus 4 ~~~v~~~-~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 81 (91)
T 2pkt_A 4 TQQIDLQ-GPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLT 81 (91)
T ss_dssp EEEEEEE-SSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred cEEEEEC-CCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 3556665 4578999999876655689999999999999999 9999999999999999999999999999977889999
Q ss_pred EEECCch
Q psy12578 144 VRYTPKV 150 (172)
Q Consensus 144 v~r~~~~ 150 (172)
|.|++..
T Consensus 82 v~R~g~~ 88 (91)
T 2pkt_A 82 VARSEHE 88 (91)
T ss_dssp EEEECCC
T ss_pred EEECCcc
Confidence 9998643
No 80
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.64 E-value=1.7e-15 Score=104.90 Aligned_cols=91 Identities=31% Similarity=0.517 Sum_probs=79.2
Q ss_pred cCCCCCEEEEEecC--CCCCCeEEeccCC---------CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHH
Q psy12578 59 EGHAHPRVVELPKT--DEGLGFNVMGGKE---------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 127 (172)
Q Consensus 59 ~~~~~~~~v~l~~~--~~g~G~~l~~~~~---------~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~ 127 (172)
..+..++.|++.+. ..+|||++.++.+ ...+++|..|.++|||+++|.|++||+|++|||.++.+.++.
T Consensus 25 ~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~ 104 (128)
T 1nf3_C 25 ILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLD 104 (128)
T ss_dssp TSCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHH
T ss_pred cCCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence 33567799999997 4799999987643 124699999999999999997899999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEECCc
Q psy12578 128 KAVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 128 ~~~~~l~~~~~~v~l~v~r~~~ 149 (172)
++..+++..++.+.|+|.|.+.
T Consensus 105 ~~~~~l~~~~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 105 QVTDMMIANSRNLIITVRPANQ 126 (128)
T ss_dssp HHHHHHHHTTTSEEEEEECCCC
T ss_pred HHHHHHHcCCCeEEEEEEECCc
Confidence 9999999888889999988763
No 81
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.64 E-value=8.8e-16 Score=103.83 Aligned_cols=94 Identities=43% Similarity=0.751 Sum_probs=83.1
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
...++.|+|.+...+|||++.++.+ ..+++|..|.+++||+++|+|++||+|++|||+++.++++.++..+++..+..+
T Consensus 13 ~~~~~~v~l~k~~~glG~~l~~~~~-~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v 91 (113)
T 1um7_A 13 AREPRKIILHKGSTGLGFNIVGGED-GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSV 91 (113)
T ss_dssp CCSEEEEEEECCSSCSSBCCBCCST-TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEE
T ss_pred CCceEEEEEEECCCcccEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence 4578999999999999999988654 457999999999999999889999999999999999999999999999888889
Q ss_pred EEEEEECCchhHHHH
Q psy12578 141 KLVVRYTPKVLEEME 155 (172)
Q Consensus 141 ~l~v~r~~~~~~~~~ 155 (172)
.|+|.|++..+..+.
T Consensus 92 ~l~v~r~~~~~~~~~ 106 (113)
T 1um7_A 92 TIVAQYRPEEYSRFE 106 (113)
T ss_dssp EEEEECCHHHHHHHH
T ss_pred EEEEEECcchhhhhh
Confidence 999999887665543
No 82
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.64 E-value=4.8e-15 Score=97.25 Aligned_cols=81 Identities=35% Similarity=0.589 Sum_probs=71.3
Q ss_pred EEEEEecCCCCCCeEEeccCC--------CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12578 65 RVVELPKTDEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136 (172)
Q Consensus 65 ~~v~l~~~~~g~G~~l~~~~~--------~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 136 (172)
.+|++.++. +|||++.++.+ ...+++|..|.++|||++ | |++||+|++|||.++.++++.++...++..
T Consensus 5 ~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 81 (95)
T 1mfg_A 5 IRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTF 81 (95)
T ss_dssp EEEEEECSS-SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHC
T ss_pred EEEEECCCC-CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcC
Confidence 567777765 89999998663 345899999999999999 8 999999999999999999999999999988
Q ss_pred CCeEEEEEEECC
Q psy12578 137 QRSVKLVVRYTP 148 (172)
Q Consensus 137 ~~~v~l~v~r~~ 148 (172)
+..+.|+|.|++
T Consensus 82 ~~~v~l~v~R~~ 93 (95)
T 1mfg_A 82 QNTVELIIVREV 93 (95)
T ss_dssp CSEEEEEEEEEC
T ss_pred CCeEEEEEEeCC
Confidence 888999998865
No 83
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-15 Score=98.28 Aligned_cols=89 Identities=30% Similarity=0.437 Sum_probs=74.5
Q ss_pred CCCCEEEEEecCC-CCCCeEEeccCC--CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--
Q psy12578 61 HAHPRVVELPKTD-EGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-- 135 (172)
Q Consensus 61 ~~~~~~v~l~~~~-~g~G~~l~~~~~--~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~-- 135 (172)
....+.+++.+.. .+|||++..... ...+++|..|.+++||+++|.|++||+|++|||+++.+.++.++..+|+.
T Consensus 7 ~~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~ 86 (101)
T 2yt7_A 7 GDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETK 86 (101)
T ss_dssp TCCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTT
T ss_pred CCceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 4467889998755 799999975221 12269999999999999955599999999999999999999999999998
Q ss_pred CCCeEEEEEEECCc
Q psy12578 136 AQRSVKLVVRYTPK 149 (172)
Q Consensus 136 ~~~~v~l~v~r~~~ 149 (172)
.+..+.|+|.|+++
T Consensus 87 ~g~~v~l~v~R~~p 100 (101)
T 2yt7_A 87 SQTSVTLSIVHCPP 100 (101)
T ss_dssp TSSEEEEEECCCCC
T ss_pred CCCeEEEEEEeCCC
Confidence 56779999998874
No 84
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.64 E-value=8.6e-16 Score=104.98 Aligned_cols=86 Identities=30% Similarity=0.541 Sum_probs=76.6
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhc--CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRH--GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ- 137 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~--G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~- 137 (172)
...++|++.++. .+|||++.++.+...+++|..|.++|||+++ | |++||+|++|||.++.++++.++..+++..+
T Consensus 14 ~~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gG-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~ 92 (119)
T 2cs5_A 14 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPR-LNEGDQVVLINGRDIAEHTHDQVVLFIKASCE 92 (119)
T ss_dssp SCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSC-CCTTCEEEEETTBCTTSSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence 467889999977 5699999998766667999999999999999 6 9999999999999999999999999998874
Q ss_pred ---CeEEEEEEECC
Q psy12578 138 ---RSVKLVVRYTP 148 (172)
Q Consensus 138 ---~~v~l~v~r~~ 148 (172)
..+.|+|.|+.
T Consensus 93 ~~~~~v~l~v~R~~ 106 (119)
T 2cs5_A 93 RHSGELMLLVRPNA 106 (119)
T ss_dssp CCSSCEEEEEECCC
T ss_pred cCCCEEEEEEEccc
Confidence 47999998875
No 85
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.64 E-value=4.6e-16 Score=105.11 Aligned_cols=88 Identities=34% Similarity=0.519 Sum_probs=77.9
Q ss_pred CCCCEEEEEecCC-CCCCeEEeccCC---------CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHH
Q psy12578 61 HAHPRVVELPKTD-EGLGFNVMGGKE---------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAV 130 (172)
Q Consensus 61 ~~~~~~v~l~~~~-~g~G~~l~~~~~---------~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~ 130 (172)
+...++|.|.+.. .+|||++.++.+ ...+++|..|.++++|+++|+|++||+|++|||+++.++++.++.
T Consensus 7 ~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~ 86 (111)
T 1uju_A 7 GPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAV 86 (111)
T ss_dssp SCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHH
T ss_pred CCccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 4456789999876 899999998763 245799999999999999998999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEECC
Q psy12578 131 ELLKQAQRSVKLVVRYTP 148 (172)
Q Consensus 131 ~~l~~~~~~v~l~v~r~~ 148 (172)
.+++..+..+.|+|.|..
T Consensus 87 ~~l~~~g~~v~l~v~r~~ 104 (111)
T 1uju_A 87 QLLRSVGDTLTVLVCDGF 104 (111)
T ss_dssp HHHSSCSSEEEECCCCCC
T ss_pred HHHHcCCCeEEEEEEECC
Confidence 999988888999998764
No 86
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.64 E-value=1.6e-15 Score=102.68 Aligned_cols=89 Identities=28% Similarity=0.506 Sum_probs=78.0
Q ss_pred CCEEEEEecCCCCCCeEEec---cCC---CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12578 63 HPRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~---~~~---~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 136 (172)
..+.|+|.+...+|||++.+ +.+ ...+++|..|.++|||+++|+|++||+|++|||.++.++++.++..+++..
T Consensus 4 ~~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 83 (113)
T 2g5m_B 4 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 83 (113)
T ss_dssp EEEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHS
T ss_pred EEEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence 34678888888999999988 332 235799999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEECCchh
Q psy12578 137 QRSVKLVVRYTPKVL 151 (172)
Q Consensus 137 ~~~v~l~v~r~~~~~ 151 (172)
+..+.|+|.|++...
T Consensus 84 g~~v~l~v~R~~~~~ 98 (113)
T 2g5m_B 84 KGRVRFMIGRERPGE 98 (113)
T ss_dssp CSSCEEEEEECCCCT
T ss_pred CCeEEEEEEeCCCCC
Confidence 888999999987543
No 87
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.64 E-value=3.3e-15 Score=100.27 Aligned_cols=89 Identities=30% Similarity=0.506 Sum_probs=76.6
Q ss_pred CCCEEEEEe--cCCCCCCeEEeccCCC-----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12578 62 AHPRVVELP--KTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 134 (172)
Q Consensus 62 ~~~~~v~l~--~~~~g~G~~l~~~~~~-----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~ 134 (172)
.....+++. +...+|||++.++.+. ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++
T Consensus 11 ~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~ 90 (108)
T 2jre_A 11 FSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR 90 (108)
T ss_dssp CEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHH
T ss_pred cEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 456778884 5668999999986532 347999999999999999889999999999999999999999999998
Q ss_pred hCCCeEEEEEEECCch
Q psy12578 135 QAQRSVKLVVRYTPKV 150 (172)
Q Consensus 135 ~~~~~v~l~v~r~~~~ 150 (172)
..+..+.|+|.|.+..
T Consensus 91 ~~g~~v~l~v~R~~~~ 106 (108)
T 2jre_A 91 NAGNPVRLLLIRRLPL 106 (108)
T ss_dssp HHCSEEEEEEEECCCC
T ss_pred cCCCeEEEEEEeCCcC
Confidence 8788899999988743
No 88
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=99.12 Aligned_cols=86 Identities=30% Similarity=0.542 Sum_probs=74.8
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS- 139 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~- 139 (172)
...++.+++.++..||||++.++.+ ..+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++...+.
T Consensus 7 ~~~~~~~~l~~~~~g~G~~~~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~ 84 (98)
T 2jxo_A 7 MLRPRLCTMKKGPSGYGFNLHSDKS-KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET 84 (98)
T ss_dssp SSCCEEEEEECTTTCCCEEEECCCS-SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred cCCcEEEEEEeCCCcccEEEEecCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence 3467899999999999999988543 3479999999999999999 999999999999999999999999999987655
Q ss_pred EEEEEEECC
Q psy12578 140 VKLVVRYTP 148 (172)
Q Consensus 140 v~l~v~r~~ 148 (172)
+.|+|.|++
T Consensus 85 ~~l~v~R~g 93 (98)
T 2jxo_A 85 KLLVVDRET 93 (98)
T ss_dssp EEEECCHHH
T ss_pred EEEEEECCc
Confidence 668887654
No 89
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.63 E-value=5.3e-16 Score=103.27 Aligned_cols=88 Identities=32% Similarity=0.597 Sum_probs=78.4
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
.....+.+.+...||||++.++.+...+++|..|.+++||+++|.|++||+|++|||+++.++++.++..+++..+..+.
T Consensus 10 ~~~~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~ 89 (103)
T 1wfv_A 10 FDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVR 89 (103)
T ss_dssp SCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEEC
T ss_pred ceEEEEEEecCCCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence 45677888888899999999876655589999999999999998899999999999999999999999999997788899
Q ss_pred EEEEECCc
Q psy12578 142 LVVRYTPK 149 (172)
Q Consensus 142 l~v~r~~~ 149 (172)
|+|.|++.
T Consensus 90 l~v~R~~~ 97 (103)
T 1wfv_A 90 LLLKRGTG 97 (103)
T ss_dssp EEEECTTC
T ss_pred EEEEECCC
Confidence 99988764
No 90
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.63 E-value=1.3e-15 Score=101.58 Aligned_cols=86 Identities=29% Similarity=0.477 Sum_probs=76.5
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
...+|+|. +..+|||++.++.+...+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.|
T Consensus 5 ~~~~v~l~-~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l 82 (103)
T 1wf7_A 5 SSGSVSLV-GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM 82 (103)
T ss_dssp CCEEEEEE-SSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEE
T ss_pred CEEEEEEe-CCCccCEEEeccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 45778887 5689999999987766678999999999999999 999999999999999999999999999888888999
Q ss_pred EEEECCch
Q psy12578 143 VVRYTPKV 150 (172)
Q Consensus 143 ~v~r~~~~ 150 (172)
+|.|+...
T Consensus 83 ~v~R~g~~ 90 (103)
T 1wf7_A 83 TLQRASAA 90 (103)
T ss_dssp EECCCSCC
T ss_pred EEEeCCCc
Confidence 99888743
No 91
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.63 E-value=1e-15 Score=105.94 Aligned_cols=85 Identities=32% Similarity=0.539 Sum_probs=72.8
Q ss_pred EEEEEe-cCCCCCCeEEeccCCC----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC---
Q psy12578 65 RVVELP-KTDEGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--- 136 (172)
Q Consensus 65 ~~v~l~-~~~~g~G~~l~~~~~~----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--- 136 (172)
..+.+. +...||||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|+..
T Consensus 27 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~ 106 (127)
T 1wg6_A 27 LEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSM 106 (127)
T ss_dssp EEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhcc
Confidence 335555 4569999999986542 24799999999999999999999999999999999999999999999976
Q ss_pred ----CCeEEEEEEECCc
Q psy12578 137 ----QRSVKLVVRYTPK 149 (172)
Q Consensus 137 ----~~~v~l~v~r~~~ 149 (172)
+..|+|+|.|...
T Consensus 107 ~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 107 EGNIRGMIQLVILRRSG 123 (127)
T ss_dssp HHHHTCEEEEEEEECSC
T ss_pred ccCCCCEEEEEEEeCCC
Confidence 6789999999764
No 92
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.63 E-value=7e-15 Score=99.71 Aligned_cols=88 Identities=35% Similarity=0.512 Sum_probs=75.9
Q ss_pred CCCCEEEEEecC-CCCCCeEEeccCCC-------CCCeEEEeecCCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHHHH
Q psy12578 61 HAHPRVVELPKT-DEGLGFNVMGGKEQ-------NSPIYISRIIPGGVADR-HGGLKRGDQLLSVNGVSVEGEDHGKAVE 131 (172)
Q Consensus 61 ~~~~~~v~l~~~-~~g~G~~l~~~~~~-------~~~~~V~~v~~g~~A~~-~G~L~~GD~I~~Vng~~v~~~~~~~~~~ 131 (172)
...++.|.+.+. ..+|||+|.++.+. ..+++|..|.+++||++ +| |++||+|++|||+.+.++++.++..
T Consensus 8 ~~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~ 86 (114)
T 1uew_A 8 SLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVK 86 (114)
T ss_dssp CCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHH
T ss_pred cccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHH
Confidence 457789999885 48999999875432 12579999999999999 88 9999999999999999999999999
Q ss_pred HHHhCCCeEEEEEEECCc
Q psy12578 132 LLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 132 ~l~~~~~~v~l~v~r~~~ 149 (172)
+++..+..+.|+|.|...
T Consensus 87 ~l~~~g~~v~l~v~r~~~ 104 (114)
T 1uew_A 87 LIKDAGLSVTLRIIPQEE 104 (114)
T ss_dssp HHHHTTTEEEEEECCCSC
T ss_pred HHHcCCCeEEEEEEeCCc
Confidence 999988889999988764
No 93
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.63 E-value=6.5e-15 Score=99.07 Aligned_cols=85 Identities=34% Similarity=0.535 Sum_probs=74.0
Q ss_pred CCEEEEEec-CCCCCCeEEeccCCCC------------CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12578 63 HPRVVELPK-TDEGLGFNVMGGKEQN------------SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA 129 (172)
Q Consensus 63 ~~~~v~l~~-~~~g~G~~l~~~~~~~------------~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~ 129 (172)
.+++++|.+ ...+|||++.++.... .+++|..|.++|||+++| |+.||+|++|||..+.++++.++
T Consensus 7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~ 85 (109)
T 1q3o_A 7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQV 85 (109)
T ss_dssp EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHH
T ss_pred CcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHH
Confidence 467889975 4589999999865421 268999999999999999 99999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEECC
Q psy12578 130 VELLKQAQRSVKLVVRYTP 148 (172)
Q Consensus 130 ~~~l~~~~~~v~l~v~r~~ 148 (172)
..+++..+..+.|+|.+..
T Consensus 86 ~~~l~~~~~~v~l~v~~~~ 104 (109)
T 1q3o_A 86 VNMIRQGGNTLMVKVVMVT 104 (109)
T ss_dssp HHHHHHTTTEEEEEEEEEE
T ss_pred HHHHHhCCCEEEEEEEECC
Confidence 9999988888999987764
No 94
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.63 E-value=4.1e-15 Score=100.24 Aligned_cols=81 Identities=23% Similarity=0.374 Sum_probs=73.2
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VK 141 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~-v~ 141 (172)
.+++|.|.+++.+|||++.+ ..+++|..|.+++||+++| |+.||+|++|||.++.++++.++..+++..++. +.
T Consensus 23 ~~r~v~l~k~~~~~G~~l~~----~~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~ 97 (109)
T 2vsv_A 23 MPRSIRFTAEEGDLGFTLRG----NAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIE 97 (109)
T ss_dssp SCEEEEECCGGGCCCEEEES----SSSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEE
T ss_pred CCEEEEEEeCCCceeEEEeC----CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEE
Confidence 67899999988999999976 3468999999999999999 999999999999999999999999999988776 99
Q ss_pred EEEEECC
Q psy12578 142 LVVRYTP 148 (172)
Q Consensus 142 l~v~r~~ 148 (172)
|+|.|..
T Consensus 98 l~V~~~~ 104 (109)
T 2vsv_A 98 MKVVSLL 104 (109)
T ss_dssp EEEESCC
T ss_pred EEEEECC
Confidence 9997754
No 95
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.63 E-value=4.5e-15 Score=97.98 Aligned_cols=84 Identities=24% Similarity=0.439 Sum_probs=73.3
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
..++.|.|.|.. .+|||++.... ..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++..++.+
T Consensus 11 ~~~~~v~l~K~~~~~lG~~l~~~~--~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v 88 (97)
T 2ejy_A 11 HMVRLIQFEKVTEEPMGICLKLNE--KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMI 88 (97)
T ss_dssp --CEEEEEEECSSSCCSEEEEECT--TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEE
T ss_pred CccEEEEEEeCCCCCeeEEEEeCC--CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 467899999865 79999998633 357999999999999999999999999999999999989999999999888789
Q ss_pred EEEEEEC
Q psy12578 141 KLVVRYT 147 (172)
Q Consensus 141 ~l~v~r~ 147 (172)
.|+|.+.
T Consensus 89 ~L~V~~~ 95 (97)
T 2ejy_A 89 SLKVIPN 95 (97)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 9998764
No 96
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.6e-15 Score=97.92 Aligned_cols=87 Identities=33% Similarity=0.547 Sum_probs=76.0
Q ss_pred CCCCEEEEEecCCC-CCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 61 HAHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 61 ~~~~~~v~l~~~~~-g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
...++.|+|.+... .|||++.+..+...+++|..|.+++||+++| |++||+|++|||.++.++++.++...++. +..
T Consensus 8 ~~~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~ 85 (100)
T 2eeh_A 8 SDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-SSR 85 (100)
T ss_dssp CCEECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-CSS
T ss_pred CCeEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-CCE
Confidence 34567789988774 5999999876555689999999999999999 99999999999999999999999999877 678
Q ss_pred EEEEEEECCc
Q psy12578 140 VKLVVRYTPK 149 (172)
Q Consensus 140 v~l~v~r~~~ 149 (172)
+.|+|.|++.
T Consensus 86 v~l~v~R~g~ 95 (100)
T 2eeh_A 86 LHMMVRRMGS 95 (100)
T ss_dssp EEEEEEECSC
T ss_pred EEEEEEECCc
Confidence 9999999874
No 97
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.62 E-value=1.2e-14 Score=98.69 Aligned_cols=87 Identities=22% Similarity=0.391 Sum_probs=75.9
Q ss_pred CCCCEEEEEecCCC-CCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 61 HAHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 61 ~~~~~~v~l~~~~~-g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
...+++|++.+... +|||++.++.+...+++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++..++.
T Consensus 22 ~~~~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~ 101 (114)
T 2gzv_A 22 SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 101 (114)
T ss_dssp CCCCEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred cCCCEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 35779999999874 59999998766556799999999999999988999999999999999999999999999988888
Q ss_pred EEEEEEEC
Q psy12578 140 VKLVVRYT 147 (172)
Q Consensus 140 v~l~v~r~ 147 (172)
+.|+|.+.
T Consensus 102 v~l~v~~~ 109 (114)
T 2gzv_A 102 VTIHYNKL 109 (114)
T ss_dssp EEEEEECC
T ss_pred EEEEEEec
Confidence 89988654
No 98
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.62 E-value=3.4e-15 Score=101.72 Aligned_cols=86 Identities=34% Similarity=0.544 Sum_probs=75.8
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCC------CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 134 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~------~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~ 134 (172)
..+++|+|.++. .+|||++.++.+. ..+++|..|.+++||+ +| |++||+|++|||+++.++++.++..+++
T Consensus 13 ~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~ 90 (117)
T 2csj_A 13 WEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLR 90 (117)
T ss_dssp EEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred ceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence 356788999886 8999999987652 4579999999999997 77 9999999999999999999999999999
Q ss_pred hCCCeEEEEEEECCc
Q psy12578 135 QAQRSVKLVVRYTPK 149 (172)
Q Consensus 135 ~~~~~v~l~v~r~~~ 149 (172)
..+..+.|+|.|...
T Consensus 91 ~~~~~v~l~v~R~~~ 105 (117)
T 2csj_A 91 KSGKIAAIVVKRPRK 105 (117)
T ss_dssp HSCSEEEEEEEEEEE
T ss_pred cCCCeEEEEEEECCc
Confidence 988889999988653
No 99
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.62 E-value=7.2e-15 Score=99.56 Aligned_cols=84 Identities=29% Similarity=0.573 Sum_probs=75.7
Q ss_pred CCCEEEEEecCCC-CCCeEEeccCCCCCCeEEEeecCCChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 62 AHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGL-KRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 62 ~~~~~v~l~~~~~-g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L-~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
...++|++.+... +|||.+... ..+++|..|.+++||+++| | ++||+|++|||+.+.++++.++..+++..++.
T Consensus 24 ~~~~~v~l~k~~~~~lG~~i~~~---~~gv~V~~V~~~spA~~aG-ll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~ 99 (113)
T 1va8_A 24 ETVKIVRIEKARDIPLGATVRNE---MDSVIISRIVKGGAAEKSG-LLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGT 99 (113)
T ss_dssp EECEEEEEEECTTCCCCEEEEEC---SSSEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEE
T ss_pred CceEEEEEEeCCCCceeEEEEeC---CCCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 3678899999886 999999874 4579999999999999999 7 99999999999999999999999999988888
Q ss_pred EEEEEEECCc
Q psy12578 140 VKLVVRYTPK 149 (172)
Q Consensus 140 v~l~v~r~~~ 149 (172)
+.|+|.|...
T Consensus 100 v~l~v~r~~~ 109 (113)
T 1va8_A 100 LTFVLIPSSG 109 (113)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEECCc
Confidence 9999988764
No 100
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.62 E-value=1.2e-14 Score=98.04 Aligned_cols=89 Identities=35% Similarity=0.630 Sum_probs=76.9
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-- 136 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-- 136 (172)
.....+.+.++..||||++.++.+. ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++..
T Consensus 10 ~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~ 89 (111)
T 2koj_A 10 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKM 89 (111)
T ss_dssp CEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCC
T ss_pred CcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 3556788888889999999975432 25799999999999999988999999999999999999999999999985
Q ss_pred CCeEEEEEEECCch
Q psy12578 137 QRSVKLVVRYTPKV 150 (172)
Q Consensus 137 ~~~v~l~v~r~~~~ 150 (172)
+..+.|+|.|++..
T Consensus 90 g~~v~l~v~R~~~~ 103 (111)
T 2koj_A 90 EGTVSLLVFRQEEA 103 (111)
T ss_dssp SSEEEEEEEECCCC
T ss_pred CCeEEEEEEeCCCC
Confidence 67799999988643
No 101
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.62 E-value=8.9e-15 Score=97.85 Aligned_cols=84 Identities=35% Similarity=0.524 Sum_probs=75.3
Q ss_pred CEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 64 PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 64 ~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
++.+.|.+.. .+|||.+..... ..+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++..+..+.|
T Consensus 2 ~r~v~l~~~~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 79 (106)
T 3ngh_A 2 PRESKLSKQEGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 79 (106)
T ss_dssp CEEEEEECCTTCCCCCEEECCTT-CCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEE
T ss_pred CEEEEEEeCCCCeeCEEEEEEeC-CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEE
Confidence 6889999977 789999987543 4579999999999999999 999999999999999999999999999988889999
Q ss_pred EEEECCc
Q psy12578 143 VVRYTPK 149 (172)
Q Consensus 143 ~v~r~~~ 149 (172)
+|.|...
T Consensus 80 ~v~r~~~ 86 (106)
T 3ngh_A 80 LVLDGDS 86 (106)
T ss_dssp EEECHHH
T ss_pred EEEECCe
Confidence 9988653
No 102
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.61 E-value=8.6e-15 Score=97.46 Aligned_cols=84 Identities=33% Similarity=0.569 Sum_probs=74.1
Q ss_pred CCCEEEEEecCCCCCCeEEeccCC--------CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~--------~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l 133 (172)
.....+++.++. +|||++.++.+ ...+++|..|.++|||++ | |++||+|++|||.++.++++.++...+
T Consensus 10 ~~~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~ 86 (103)
T 1n7t_A 10 KQEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLL 86 (103)
T ss_dssp CCCEEEEEECSS-CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred cEEEEEEEccCC-CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHHh
Confidence 455778888866 99999998653 355899999999999999 8 999999999999999999999999999
Q ss_pred HhCCCeEEEEEEECC
Q psy12578 134 KQAQRSVKLVVRYTP 148 (172)
Q Consensus 134 ~~~~~~v~l~v~r~~ 148 (172)
+..+..+.|+|.|+.
T Consensus 87 ~~~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 87 KTFQNTVELIIVREV 101 (103)
T ss_dssp HHCCSEEEEEEECCC
T ss_pred hcCCCeEEEEEEecC
Confidence 988888999998864
No 103
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.61 E-value=8.8e-15 Score=99.91 Aligned_cols=89 Identities=33% Similarity=0.605 Sum_probs=76.2
Q ss_pred CCCEEEEEecC-CCCCCeEEeccCCC-CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 62 AHPRVVELPKT-DEGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 62 ~~~~~v~l~~~-~~g~G~~l~~~~~~-~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
...+.+.+.+. ..+|||++.++.+. ..+++|..|.+++||+++|+|++||+|++|||+++.++++.++..+++..++.
T Consensus 14 ~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~ 93 (119)
T 1x6d_A 14 DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREP 93 (119)
T ss_dssp TTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSS
T ss_pred CCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence 35567778775 58999999987653 45799999999999999998999999999999999999999999999988766
Q ss_pred -EEEEEEECCch
Q psy12578 140 -VKLVVRYTPKV 150 (172)
Q Consensus 140 -v~l~v~r~~~~ 150 (172)
+.+++.|.+..
T Consensus 94 ~~~l~v~R~~~~ 105 (119)
T 1x6d_A 94 RQAVIVTRKLTP 105 (119)
T ss_dssp SEEEEEEECCCS
T ss_pred eEEEEEEcCCCc
Confidence 66888887643
No 104
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.61 E-value=1.8e-15 Score=116.54 Aligned_cols=88 Identities=41% Similarity=0.645 Sum_probs=80.1
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADR-HGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~-~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
..+++|+|.|.. .||||+|.++.+...+++|..|.+||||++ +| |++||+|++|||+++.+++|.+++.+++..++.
T Consensus 76 ~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aG-L~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~ 154 (263)
T 1z87_A 76 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEA-LFVGDAILSVNGEDLSSATHDEAVQALKKTGKE 154 (263)
T ss_dssp CSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTT-CCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSC
T ss_pred CccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCcCHHHHHHHHhcCCCe
Confidence 367999999974 899999999887667899999999999999 56 999999999999999999999999999999888
Q ss_pred EEEEEEECCch
Q psy12578 140 VKLVVRYTPKV 150 (172)
Q Consensus 140 v~l~v~r~~~~ 150 (172)
|.|+|.|.+..
T Consensus 155 V~L~V~R~~~~ 165 (263)
T 1z87_A 155 VVLEVKYMKEV 165 (263)
T ss_dssp CCEEEECCSSS
T ss_pred EEEEEEeCccc
Confidence 99999997654
No 105
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.61 E-value=1.1e-14 Score=98.38 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=70.9
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS 139 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~ 139 (172)
...++|+|.|+..||||+|.++ ..+.+|..|.+ ++..+| |++||+|++|||.++.+++|.+++++|+.. +..
T Consensus 11 ~~~~~V~L~Kg~~G~GFsI~~~---~~g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~ 84 (113)
T 3soe_A 11 GLLVTIPLIKGPKGFGFAIADS---PTGQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGAD 84 (113)
T ss_dssp CEEEEEEEECBTTBSSEEEEEE---TTEEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCE
T ss_pred CCEEEEEEEECCCcccEEEeCC---CCCcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence 3568899999999999999764 23577889888 577777 999999999999999999999999999986 557
Q ss_pred EEEEEEECCc
Q psy12578 140 VKLVVRYTPK 149 (172)
Q Consensus 140 v~l~v~r~~~ 149 (172)
++|+|.|.+.
T Consensus 85 v~L~V~R~g~ 94 (113)
T 3soe_A 85 VPLLILRGGP 94 (113)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEEECCc
Confidence 9999999874
No 106
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=6.6e-16 Score=106.69 Aligned_cols=89 Identities=27% Similarity=0.470 Sum_probs=77.2
Q ss_pred CCCCCEEEEEecCCCCCCeEEeccCC----------------------------CCCCeEEEeecCCChhhhcCCCCCCC
Q psy12578 60 GHAHPRVVELPKTDEGLGFNVMGGKE----------------------------QNSPIYISRIIPGGVADRHGGLKRGD 111 (172)
Q Consensus 60 ~~~~~~~v~l~~~~~g~G~~l~~~~~----------------------------~~~~~~V~~v~~g~~A~~~G~L~~GD 111 (172)
.+..+++|+|.|...||||++.+... ...+++|..|.+++||+++| |++||
T Consensus 5 ~~~~~r~v~l~r~~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD 83 (126)
T 2yuy_A 5 SSGGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGD 83 (126)
T ss_dssp CSSSCCCEEEECCSSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSC
T ss_pred CCCCCEEEEEEECCCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCC
Confidence 35578899999999999999975210 12468999999999999999 99999
Q ss_pred EEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12578 112 QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 112 ~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 149 (172)
+|++|||+++.++++.++..+++..+..+.|+|.|...
T Consensus 84 ~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 84 RIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS 121 (126)
T ss_dssp CCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred EEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence 99999999999999999999999888889999988753
No 107
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.60 E-value=7.5e-15 Score=108.32 Aligned_cols=87 Identities=33% Similarity=0.594 Sum_probs=79.0
Q ss_pred CCCCEEEEEecC-CCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 61 HAHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 61 ~~~~~~v~l~~~-~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
....+.|.+.+. ..||||++.++.+...+++|..|.+||||+++| |++||+|++|||.++.++++.++..+++. +..
T Consensus 82 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~ 159 (192)
T 3k1r_A 82 SRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-EKT 159 (192)
T ss_dssp CSSCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-SSE
T ss_pred CCceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-CCe
Confidence 456788999997 589999999877666689999999999999999 99999999999999999999999999988 888
Q ss_pred EEEEEEECCc
Q psy12578 140 VKLVVRYTPK 149 (172)
Q Consensus 140 v~l~v~r~~~ 149 (172)
+.|+|.|++.
T Consensus 160 v~l~v~r~g~ 169 (192)
T 3k1r_A 160 VSIKVRHIGL 169 (192)
T ss_dssp EEEEEEECCE
T ss_pred EEEEEEECCc
Confidence 9999999875
No 108
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.60 E-value=1.4e-14 Score=96.96 Aligned_cols=86 Identities=29% Similarity=0.536 Sum_probs=75.1
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCC------CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 134 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~------~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~ 134 (172)
..+++|+|.|.. .+|||++.++.+. ..+++|..|.++|||+ +| |++||+|++|||.++.++++..+...++
T Consensus 6 ~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~ 83 (107)
T 2h2b_A 6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLR 83 (107)
T ss_dssp EEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred ceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhh
Confidence 356889999985 8999999986652 3589999999999999 88 9999999999999999999988888888
Q ss_pred hCCCeEEEEEEECCc
Q psy12578 135 QAQRSVKLVVRYTPK 149 (172)
Q Consensus 135 ~~~~~v~l~v~r~~~ 149 (172)
..+..+.|+|.|+..
T Consensus 84 ~~g~~v~l~v~R~~~ 98 (107)
T 2h2b_A 84 KSGKNAKITIRRKKG 98 (107)
T ss_dssp TCCSEEEEEEEEESC
T ss_pred CCCCEEEEEEEECCC
Confidence 788889999988763
No 109
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.60 E-value=2.3e-14 Score=98.59 Aligned_cols=91 Identities=29% Similarity=0.521 Sum_probs=77.0
Q ss_pred cCCCCCEEEEEecCC-CCCCeEEeccCC---------CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHH
Q psy12578 59 EGHAHPRVVELPKTD-EGLGFNVMGGKE---------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 128 (172)
Q Consensus 59 ~~~~~~~~v~l~~~~-~g~G~~l~~~~~---------~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~ 128 (172)
..+..++++.+.+.. .+|||++.++.+ ...+++|..|.++|||+++|.|++||+|++|||.++.++++.+
T Consensus 20 s~~~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~ 99 (123)
T 2iwq_A 20 FQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ 99 (123)
T ss_dssp ---CCCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred cccCCCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 344577999999875 789999986542 1247999999999999999889999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEECCc
Q psy12578 129 AVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 129 ~~~~l~~~~~~v~l~v~r~~~ 149 (172)
+..+++..++.+.|+|.|.+.
T Consensus 100 ~~~~l~~~~~~v~l~v~r~~~ 120 (123)
T 2iwq_A 100 AVEAIRKAGNPVVFMVQSIIS 120 (123)
T ss_dssp HHHHHHHCCSSEEEEEECCCC
T ss_pred HHHHHHcCCCeEEEEEEECCc
Confidence 999999988899999988764
No 110
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.60 E-value=2.4e-14 Score=95.16 Aligned_cols=87 Identities=30% Similarity=0.569 Sum_probs=74.8
Q ss_pred CCEEEEEecCC-CCCCeEEeccCCC---------CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12578 63 HPRVVELPKTD-EGLGFNVMGGKEQ---------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 132 (172)
Q Consensus 63 ~~~~v~l~~~~-~g~G~~l~~~~~~---------~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~ 132 (172)
.|+++.+.+.. .+|||++.++... ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+
T Consensus 4 dp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~ 83 (103)
T 2fcf_A 4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA 83 (103)
T ss_dssp SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 57889999876 6899999875431 2479999999999999998899999999999999999999999999
Q ss_pred HHhCCCeEEEEEEECCc
Q psy12578 133 LKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 133 l~~~~~~v~l~v~r~~~ 149 (172)
++..++.+.|+|.|...
T Consensus 84 l~~~~~~v~l~v~r~~~ 100 (103)
T 2fcf_A 84 IRKAGNPVVFMVQSIIS 100 (103)
T ss_dssp HHTCCSSEEEEEECCCC
T ss_pred HHhCCCcEEEEEEECCC
Confidence 99888789999988753
No 111
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.60 E-value=1.1e-14 Score=99.47 Aligned_cols=86 Identities=29% Similarity=0.537 Sum_probs=72.3
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCC-CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC----C
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA----Q 137 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~-~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~----~ 137 (172)
..+.+.+.+. .||||++.++.+.. .+++|..|.++|||+++|.|++||+|++|||.++.+++|.++..+|+.. +
T Consensus 18 ~~~~~~~~~~-~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g 96 (118)
T 1v6b_A 18 DVRLLRIKKE-GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGG 96 (118)
T ss_dssp CEEEEEEESC-SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTC
T ss_pred eEEEEEECCC-CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCC
Confidence 4466677665 49999999876543 3599999999999999944999999999999999999999999999865 6
Q ss_pred CeEEEEEEECCc
Q psy12578 138 RSVKLVVRYTPK 149 (172)
Q Consensus 138 ~~v~l~v~r~~~ 149 (172)
..++|+|.|.+.
T Consensus 97 ~~v~l~v~r~~~ 108 (118)
T 1v6b_A 97 DWIDLVVAVCPP 108 (118)
T ss_dssp SEEEEEEECCCS
T ss_pred CeEEEEEEeCCc
Confidence 679999998653
No 112
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.59 E-value=8.1e-15 Score=96.87 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=71.9
Q ss_pred EEEEEecCCCCCCeEEeccCCC--C-----CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 65 RVVELPKTDEGLGFNVMGGKEQ--N-----SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 65 ~~v~l~~~~~g~G~~l~~~~~~--~-----~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
.++.+.+...+|||++.++... . .+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++..+
T Consensus 4 ~~v~l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g 82 (99)
T 3khf_A 4 PPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSG 82 (99)
T ss_dssp CCEEEEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 3578888889999999864321 1 146899999999999999 9999999999999999999999999999888
Q ss_pred CeEEEEEEECCc
Q psy12578 138 RSVKLVVRYTPK 149 (172)
Q Consensus 138 ~~v~l~v~r~~~ 149 (172)
..+.|++.|...
T Consensus 83 ~~v~l~v~r~~~ 94 (99)
T 3khf_A 83 NKISLRTTALEN 94 (99)
T ss_dssp SEEEEEEECSCS
T ss_pred CEEEEEEEECCC
Confidence 899999998653
No 113
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=93.80 Aligned_cols=82 Identities=24% Similarity=0.385 Sum_probs=68.7
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSV 140 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v 140 (172)
+.++|+|.++..||||++.+..+ ..+++|..+ ++|||+ +| |++||+|++|||.++.++++.++..+++. .+..+
T Consensus 3 ~~~~v~l~k~~~g~G~~~~~~~~-~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v 78 (88)
T 3bpu_A 3 ELITVHIVKGPMGFGFTIADSPG-GGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEV 78 (88)
T ss_dssp EEEEEEEECBTTBSSCEEEECTT-SSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEE
T ss_pred cEEEEEEEcCCCceeEEEEecCC-CCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEE
Confidence 45789999999999999987533 356888876 999999 88 99999999999999999999999999985 46679
Q ss_pred EEEEEECC
Q psy12578 141 KLVVRYTP 148 (172)
Q Consensus 141 ~l~v~r~~ 148 (172)
.|+|.|++
T Consensus 79 ~l~v~R~g 86 (88)
T 3bpu_A 79 TLLVQRQT 86 (88)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeCC
Confidence 99998865
No 114
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.59 E-value=1.7e-14 Score=100.20 Aligned_cols=76 Identities=29% Similarity=0.507 Sum_probs=67.6
Q ss_pred CCCCCeEEeccCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--CeEEEEEEEC
Q psy12578 73 DEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSVKLVVRYT 147 (172)
Q Consensus 73 ~~g~G~~l~~~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~--~~v~l~v~r~ 147 (172)
..+|||++.++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+ ..+.|+|.|.
T Consensus 47 ~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 126 (131)
T 1wfg_A 47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126 (131)
T ss_dssp CTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEE
T ss_pred CCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcC
Confidence 47899999886644 237999999999999999999999999999999999999999999999874 6799999886
Q ss_pred C
Q psy12578 148 P 148 (172)
Q Consensus 148 ~ 148 (172)
.
T Consensus 127 g 127 (131)
T 1wfg_A 127 G 127 (131)
T ss_dssp C
T ss_pred C
Confidence 5
No 115
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.59 E-value=2.1e-14 Score=94.51 Aligned_cols=85 Identities=25% Similarity=0.314 Sum_probs=74.4
Q ss_pred CCCCEEEEEec-CCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 61 HAHPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 61 ~~~~~~v~l~~-~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
.....++.|.+ ...+|||++... ..+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..++.
T Consensus 6 ~~~~~~v~l~~~~~~glG~~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~ 82 (96)
T 2qkv_A 6 SLEKFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGK 82 (96)
T ss_dssp CCCCEEEEEECBTTBCCCEEEEEC---SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred HCceEEEEEEeCCCCCccEEEEeC---CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCc
Confidence 34567888876 558999998762 35799999999999999988999999999999999999999999999998889
Q ss_pred EEEEEEECC
Q psy12578 140 VKLVVRYTP 148 (172)
Q Consensus 140 v~l~v~r~~ 148 (172)
+.|+|.|..
T Consensus 83 v~l~v~R~~ 91 (96)
T 2qkv_A 83 VSMEVTRPK 91 (96)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEeCC
Confidence 999998864
No 116
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=100.78 Aligned_cols=89 Identities=28% Similarity=0.493 Sum_probs=77.2
Q ss_pred CCCEEEEEec-CCCCCCeEEeccCC-----CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12578 62 AHPRVVELPK-TDEGLGFNVMGGKE-----QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 135 (172)
Q Consensus 62 ~~~~~v~l~~-~~~g~G~~l~~~~~-----~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~ 135 (172)
...+.|.|.+ ...+|||++.++.+ ...+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.
T Consensus 14 ~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~ 93 (129)
T 2dmz_A 14 FETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN 93 (129)
T ss_dssp EEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 4567788865 56899999998643 24579999999999999998899999999999999999999999999999
Q ss_pred CCCeEEEEEEECCch
Q psy12578 136 AQRSVKLVVRYTPKV 150 (172)
Q Consensus 136 ~~~~v~l~v~r~~~~ 150 (172)
.+..+.|+|.|++..
T Consensus 94 ~~~~v~l~v~R~~~~ 108 (129)
T 2dmz_A 94 AGQVVHLTLVRRKTS 108 (129)
T ss_dssp CCSSEEEEEEEESSS
T ss_pred CCCeEEEEEEeCCcc
Confidence 777899999988743
No 117
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9.6e-15 Score=95.25 Aligned_cols=83 Identities=36% Similarity=0.498 Sum_probs=72.8
Q ss_pred CCCEEEEEecC-CCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 62 AHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 62 ~~~~~v~l~~~-~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
..+|+|+|.|. ..+|||++.+. ..+++|..|.+++||+++|.|++||+|++|||+++ +.+++++..+++..++.+
T Consensus 5 ~~~r~v~l~k~~~~~lG~~i~~~---~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v 80 (91)
T 2e7k_A 5 SSGRMVGIRKTAGEHLGVTFRVE---GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSV 80 (91)
T ss_dssp CCSCBCCBCCCTTCCCCEEEEES---SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSB
T ss_pred CCcEEEEEEECCCCcEeEEEEec---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeE
Confidence 46688898774 47899999873 45799999999999999877999999999999999 999999999999888889
Q ss_pred EEEEEECC
Q psy12578 141 KLVVRYTP 148 (172)
Q Consensus 141 ~l~v~r~~ 148 (172)
.|+|.+..
T Consensus 81 ~l~v~~~~ 88 (91)
T 2e7k_A 81 ILKILSGP 88 (91)
T ss_dssp CEEEECCS
T ss_pred EEEEEECC
Confidence 99998754
No 118
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.58 E-value=5.6e-14 Score=96.32 Aligned_cols=87 Identities=36% Similarity=0.632 Sum_probs=75.3
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCC---CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-- 136 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~---~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-- 136 (172)
.....+.+.+...+|||++.++... ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++..
T Consensus 29 ~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~ 108 (121)
T 2kom_A 29 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKM 108 (121)
T ss_dssp CEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCS
T ss_pred CeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCC
Confidence 3556788888889999999986432 25799999999999999988999999999999999999999999999985
Q ss_pred CCeEEEEEEECC
Q psy12578 137 QRSVKLVVRYTP 148 (172)
Q Consensus 137 ~~~v~l~v~r~~ 148 (172)
+..+.|+|.|.+
T Consensus 109 g~~v~l~v~R~g 120 (121)
T 2kom_A 109 EGTVSLLVFRQE 120 (121)
T ss_dssp SCEEEEEEEECC
T ss_pred CCEEEEEEEeCC
Confidence 677999998865
No 119
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7e-15 Score=97.49 Aligned_cols=86 Identities=30% Similarity=0.497 Sum_probs=73.3
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhc-CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRH-GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~-G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
...+.+++.+.. .+|||++.++.+...+++|..|.+++||+++ | |++||+|++|||+++.++ +.++..+++..+..
T Consensus 8 ~~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agG-L~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~ 85 (100)
T 2edp_A 8 GSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQK-MRTGDELVNINGTPLYGS-RQEALILIKGSFRI 85 (100)
T ss_dssp CCCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTS-CCTTCEEEEETTEECCSC-SHHHHHHHHTCCSS
T ss_pred CCcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCC-CCCCCEEEEECCEEccch-HHHHHHHHHhCCCe
Confidence 355666666543 6999999987765567999999999999999 6 999999999999999886 88899999888878
Q ss_pred EEEEEEECCc
Q psy12578 140 VKLVVRYTPK 149 (172)
Q Consensus 140 v~l~v~r~~~ 149 (172)
+.|+|.|+..
T Consensus 86 v~l~v~R~~~ 95 (100)
T 2edp_A 86 LKLIVRRRNS 95 (100)
T ss_dssp CEEEEEECCC
T ss_pred EEEEEEeCCC
Confidence 9999999864
No 120
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.58 E-value=1.9e-14 Score=105.73 Aligned_cols=86 Identities=38% Similarity=0.641 Sum_probs=78.5
Q ss_pred CCEEEEEecCCCCCCeEEeccCCC-----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~-----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
..+.++|.+++.||||++.++.+. ..+++|..|.++|||+++|+|+.||+|++|||+++.++++.++..+++..+
T Consensus 5 ~~~~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 84 (196)
T 3gsl_A 5 EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG 84 (196)
T ss_dssp EEEEEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred EEEEEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 557899999999999999998754 458999999999999999999999999999999999999999999999998
Q ss_pred CeEEEEEEECC
Q psy12578 138 RSVKLVVRYTP 148 (172)
Q Consensus 138 ~~v~l~v~r~~ 148 (172)
..+.|+|.|..
T Consensus 85 ~~v~l~v~r~~ 95 (196)
T 3gsl_A 85 SIVRLYVMRRK 95 (196)
T ss_dssp SEEEEEEEEEC
T ss_pred CcEEEEEEecC
Confidence 88999998764
No 121
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.58 E-value=5.3e-15 Score=96.93 Aligned_cols=77 Identities=25% Similarity=0.498 Sum_probs=69.9
Q ss_pred CCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12578 72 TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 72 ~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 149 (172)
+..+|||++.++.+...+++|..|.+++||+++| |++||+|++|||.++.++++.++..+++..+..+.|+|.|++.
T Consensus 14 ~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~ 90 (94)
T 1vb7_A 14 GPAPWGFRISGGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG 90 (94)
T ss_dssp SSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred CCCCccEEEecccCCCCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCc
Confidence 5589999999877655679999999999999999 9999999999999999999999999999887789999999864
No 122
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.58 E-value=3.3e-14 Score=93.30 Aligned_cols=85 Identities=28% Similarity=0.480 Sum_probs=74.1
Q ss_pred CEEEEEecCCCCCCeEEeccCC----CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 64 PRVVELPKTDEGLGFNVMGGKE----QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 64 ~~~v~l~~~~~g~G~~l~~~~~----~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
..++++.++..+|||++.+... ...+++|..|.+++||+++|.|++||+|++|||.++.++++.++..+++..+..
T Consensus 5 ~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 84 (97)
T 2iwn_A 5 TFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 84 (97)
T ss_dssp EEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSE
T ss_pred EEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 3567788888999999998632 245799999999999999988999999999999999999999999999888888
Q ss_pred EEEEEEECC
Q psy12578 140 VKLVVRYTP 148 (172)
Q Consensus 140 v~l~v~r~~ 148 (172)
+.|+|.|++
T Consensus 85 v~l~v~r~g 93 (97)
T 2iwn_A 85 VLLTLMRRG 93 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEeCC
Confidence 999998865
No 123
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.58 E-value=9.5e-15 Score=96.84 Aligned_cols=83 Identities=22% Similarity=0.385 Sum_probs=74.5
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
+.....+++.+...+|||.+... .+++|..|.+++||+++| |++||+|++|||.++.++++.++..+++..++.+
T Consensus 13 ~~~~~~v~l~~~~~g~G~~~~~~----~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v 87 (100)
T 1whd_A 13 NGEKLQITIRRGKDGFGFTICCD----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEI 87 (100)
T ss_dssp CCEEEEEEEECCSSSSSCBCCCS----SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEE
T ss_pred ccceEEEEEECCCCeeeEEEeCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 45667789999889999999763 468999999999999999 9999999999999999999999999999888889
Q ss_pred EEEEEECC
Q psy12578 141 KLVVRYTP 148 (172)
Q Consensus 141 ~l~v~r~~ 148 (172)
.|+|.|+.
T Consensus 88 ~l~v~R~~ 95 (100)
T 1whd_A 88 ILLVWRVS 95 (100)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 99998875
No 124
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.7e-15 Score=97.23 Aligned_cols=82 Identities=26% Similarity=0.435 Sum_probs=73.3
Q ss_pred CCCCEEEEEecCC--CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 61 HAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 61 ~~~~~~v~l~~~~--~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
...+++|+|.+.. .+|||.+.+ ..+++|..|.+++||+ +| |++||+|++|||.++.++++.++..+++..+.
T Consensus 6 ~~~~~~v~l~~~~~~~~~G~~l~~----~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~ 79 (96)
T 2edv_A 6 SGVRHTVKIDKDTLLQDYGFHISE----SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREAED 79 (96)
T ss_dssp SCEEEEEEECCCSSSCSCSBCCCS----SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHCSS
T ss_pred CCccEEEEEEECCCCCcccEEEec----CCCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 4467889999977 689999976 4579999999999996 77 99999999999999999999999999998888
Q ss_pred eEEEEEEECC
Q psy12578 139 SVKLVVRYTP 148 (172)
Q Consensus 139 ~v~l~v~r~~ 148 (172)
.+.|+|.|+.
T Consensus 80 ~v~l~v~R~~ 89 (96)
T 2edv_A 80 SLSITVVRCT 89 (96)
T ss_dssp CEEEEEEECC
T ss_pred eEEEEEEECC
Confidence 8999999976
No 125
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.57 E-value=2.7e-14 Score=95.71 Aligned_cols=81 Identities=26% Similarity=0.334 Sum_probs=71.8
Q ss_pred EEEEEec-CCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12578 65 RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 143 (172)
Q Consensus 65 ~~v~l~~-~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 143 (172)
.+|+|.+ ...|+||++.+. ..+++|..|.++|||+++|+|++||+|++|||+++.+.++.++..+++..++.+.|+
T Consensus 4 ~~v~L~k~~~~glG~~i~~~---~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~ 80 (106)
T 2la8_A 4 FNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSME 80 (106)
T ss_dssp EEEEECCBSSSTTCCEEEEC---SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEE
T ss_pred EEEEEEeCCCCccCEEEEeC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Confidence 5678875 558999999772 457999999999999999999999999999999999999999999999988889999
Q ss_pred EEECC
Q psy12578 144 VRYTP 148 (172)
Q Consensus 144 v~r~~ 148 (172)
|.|..
T Consensus 81 v~R~~ 85 (106)
T 2la8_A 81 VTRPK 85 (106)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98864
No 126
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-14 Score=98.33 Aligned_cols=88 Identities=30% Similarity=0.525 Sum_probs=76.9
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS- 139 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~- 139 (172)
...++.+++.++..||||.+.++.+ ..+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+++...+.
T Consensus 7 ~~~~r~v~l~~~~~g~G~~l~~~~~-~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~ 84 (128)
T 2kjd_A 7 MLRPRLCTMKKGPSGYGFNLHSDKS-KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET 84 (128)
T ss_dssp TCCCEEEEEECCSSSCCEEEEECSS-SCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEE
T ss_pred CCCcEEEEEecCCCcccEEEEecCC-CCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCE
Confidence 4578999999999999999988553 3479999999999999999 999999999999999999999999999887555
Q ss_pred EEEEEEECCch
Q psy12578 140 VKLVVRYTPKV 150 (172)
Q Consensus 140 v~l~v~r~~~~ 150 (172)
+.|+|.|++..
T Consensus 85 ~~l~v~R~g~~ 95 (128)
T 2kjd_A 85 KLLVVDRETDE 95 (128)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEEEeCCcc
Confidence 77999876643
No 127
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.57 E-value=4.5e-14 Score=92.43 Aligned_cols=84 Identities=26% Similarity=0.498 Sum_probs=70.0
Q ss_pred CCEEEEEecCC---CCCCeEEeccCC-CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 63 HPRVVELPKTD---EGLGFNVMGGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 63 ~~~~v~l~~~~---~g~G~~l~~~~~-~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
..+.|++.|.+ .+|||++..... ...+++|..|.++|||+++| |+.||+|++|||+++.+++++++..++++ .
T Consensus 6 ~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~--~ 82 (94)
T 3kzd_A 6 VTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ--P 82 (94)
T ss_dssp EEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS--S
T ss_pred ceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC--C
Confidence 56889999976 389999987432 23479999999999999999 99999999999999999999999999874 4
Q ss_pred eEEEEEEECCc
Q psy12578 139 SVKLVVRYTPK 149 (172)
Q Consensus 139 ~v~l~v~r~~~ 149 (172)
.++|+|+.-|+
T Consensus 83 ~l~ltV~~~p~ 93 (94)
T 3kzd_A 83 SLGLLVRTYPE 93 (94)
T ss_dssp EEEEEEEECCC
T ss_pred eEEEEEEecCC
Confidence 68898887664
No 128
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.57 E-value=5.4e-14 Score=104.36 Aligned_cols=91 Identities=22% Similarity=0.278 Sum_probs=80.5
Q ss_pred cCCCCCEEEEEecCCCCCCeEEeccCCCC--CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCC--CCHHHHHHHHH
Q psy12578 59 EGHAHPRVVELPKTDEGLGFNVMGGKEQN--SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG--EDHGKAVELLK 134 (172)
Q Consensus 59 ~~~~~~~~v~l~~~~~g~G~~l~~~~~~~--~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~--~~~~~~~~~l~ 134 (172)
........+++.+...+|||++.++.+.. .+++|..|.++|+|+++|+|+.||+|++|||+++.+ +++.++..+++
T Consensus 14 ~~~~~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~ 93 (206)
T 3r0h_A 14 IKPNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFH 93 (206)
T ss_dssp CCTTSCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHH
T ss_pred CCCCCEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHH
Confidence 33456788999999999999999877543 379999999999999998899999999999999999 99999999999
Q ss_pred hCCCe-EEEEEEECCc
Q psy12578 135 QAQRS-VKLVVRYTPK 149 (172)
Q Consensus 135 ~~~~~-v~l~v~r~~~ 149 (172)
..++. +.|+|.|...
T Consensus 94 ~~~~~~v~l~v~R~~~ 109 (206)
T 3r0h_A 94 TTYEKAVTLTVFRADP 109 (206)
T ss_dssp SCCSSEEEEEEECCSS
T ss_pred hcCCCceEEEEEeccc
Confidence 98888 9999998764
No 129
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.56 E-value=4.5e-14 Score=91.44 Aligned_cols=77 Identities=27% Similarity=0.466 Sum_probs=67.2
Q ss_pred EEEec--CCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12578 67 VELPK--TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144 (172)
Q Consensus 67 v~l~~--~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v 144 (172)
+.+.+ ...+|||.+.+ +++|..|.++|||+++|+|+.||+|++|||.++.+++++++..+++..++++.|++
T Consensus 4 v~l~~~~~~~~~G~~~~~------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v 77 (88)
T 3e17_A 4 VLLMKSRANEEYGLRLGS------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77 (88)
T ss_dssp EEEECBTTBCCCCEEEEE------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEeCCCCCCCCEEEeC------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 45555 33789999965 59999999999999999999999999999999999999999999999999999999
Q ss_pred EECCc
Q psy12578 145 RYTPK 149 (172)
Q Consensus 145 ~r~~~ 149 (172)
.+.+.
T Consensus 78 ~~~~~ 82 (88)
T 3e17_A 78 LRDLE 82 (88)
T ss_dssp CCC--
T ss_pred eCCCc
Confidence 76653
No 130
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.56 E-value=1.4e-14 Score=96.12 Aligned_cols=87 Identities=38% Similarity=0.642 Sum_probs=73.3
Q ss_pred CCCCEEEEEec--CCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 61 HAHPRVVELPK--TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 61 ~~~~~~v~l~~--~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
+...+++.+.+ ...+|||++.++.+...+++|..|.+++||+++| |++||+|++|||+++.++++.+++..++. +.
T Consensus 6 ~~~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~ 83 (101)
T 1uez_A 6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG-SK 83 (101)
T ss_dssp SCCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS-SS
T ss_pred CCccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcC-CC
Confidence 45778888887 3479999999876656689999999999999999 99999999999999999998777776644 45
Q ss_pred eEEEEEEECCc
Q psy12578 139 SVKLVVRYTPK 149 (172)
Q Consensus 139 ~v~l~v~r~~~ 149 (172)
.+.|+|.|+.+
T Consensus 84 ~v~l~v~R~g~ 94 (101)
T 1uez_A 84 KLVLSVYSAGR 94 (101)
T ss_dssp SCCEEECCCCC
T ss_pred eEEEEEEECCc
Confidence 78899987753
No 131
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.56 E-value=4e-14 Score=94.40 Aligned_cols=83 Identities=27% Similarity=0.426 Sum_probs=71.6
Q ss_pred CCCCEEEEEecCC-CCCCeEEeccC-------CCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12578 61 HAHPRVVELPKTD-EGLGFNVMGGK-------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 132 (172)
Q Consensus 61 ~~~~~~v~l~~~~-~g~G~~l~~~~-------~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~ 132 (172)
+..++.+.+.+.. .+|||++.+.. ....+++|..|.+++||+++| |++||+|++|||.++.++++.++..+
T Consensus 13 ~~~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~ 91 (104)
T 2z17_A 13 WSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDL 91 (104)
T ss_dssp CSCCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHH
T ss_pred CCcceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Confidence 4567888899864 78999999732 224579999999999999999 99999999999999999999999999
Q ss_pred HHhCCCeEEEEE
Q psy12578 133 LKQAQRSVKLVV 144 (172)
Q Consensus 133 l~~~~~~v~l~v 144 (172)
++..++.+.|+|
T Consensus 92 l~~~~~~v~l~v 103 (104)
T 2z17_A 92 IRSSGNLLTIET 103 (104)
T ss_dssp HHHTTTEEEEEC
T ss_pred HHhCCCcEEEEE
Confidence 999877787765
No 132
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.55 E-value=4e-14 Score=95.98 Aligned_cols=87 Identities=33% Similarity=0.502 Sum_probs=76.4
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
..++++.+.+.. .+|||.+..... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..+..+
T Consensus 12 ldp~~~~l~~~~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v 89 (114)
T 2edz_A 12 FNPRECKLSKQEGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSV 89 (114)
T ss_dssp CCCEEEEEECCTTCCCSCEEECCTT-CCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEE
T ss_pred CCCEEEEEeCCCCCcccEEEEEecC-CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence 367899998864 789999987443 4579999999999999999 9999999999999999999999999999888889
Q ss_pred EEEEEECCch
Q psy12578 141 KLVVRYTPKV 150 (172)
Q Consensus 141 ~l~v~r~~~~ 150 (172)
.|+|.|....
T Consensus 90 ~l~v~R~~~~ 99 (114)
T 2edz_A 90 TLLVLDGDSY 99 (114)
T ss_dssp EEEEECHHHH
T ss_pred EEEEEECCcc
Confidence 9999887643
No 133
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.55 E-value=5e-14 Score=96.97 Aligned_cols=85 Identities=24% Similarity=0.466 Sum_probs=71.7
Q ss_pred EEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEE
Q psy12578 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKL 142 (172)
Q Consensus 65 ~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l 142 (172)
+.+.+. ...+|||.+.++. ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..++.. .+..+.|
T Consensus 31 ~~~~~~-~~~~lG~~l~~~~--~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l 106 (124)
T 3tsv_A 31 KLVKFR-KGDSVGLRLAGGN--DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI 106 (124)
T ss_dssp EEEEEE-CSSCCCEEEEECT--TSCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEcC-CCCceeEEEecCC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEE
Confidence 434444 4579999998754 3579999999999999999 99999999999999999999999998875 5677999
Q ss_pred EEEECCchhHH
Q psy12578 143 VVRYTPKVLEE 153 (172)
Q Consensus 143 ~v~r~~~~~~~ 153 (172)
+|.|++..++.
T Consensus 107 ~v~R~~~~~~~ 117 (124)
T 3tsv_A 107 LAQKKKDVYRR 117 (124)
T ss_dssp EEEECHHHHHH
T ss_pred EEEECCchhhh
Confidence 99999866554
No 134
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=3.6e-14 Score=96.59 Aligned_cols=87 Identities=31% Similarity=0.626 Sum_probs=76.5
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
.++.|.+.+...+|||++.++. ..+++|..|.+++||+++| |++||+|++|||+++.++++.++...++..+..+.|
T Consensus 19 ~~~~v~l~~~~~~lG~~~~~~~--~~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l 95 (117)
T 1uit_A 19 EPRHVKVQKGSEPLGISIVSGE--KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITI 95 (117)
T ss_dssp CCEEEEEECSSCCCCEEEEECT--TSCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEEEeCCCCccEEEEccC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 5678999998899999998754 3479999999999999999 999999999999999999998888777777888999
Q ss_pred EEEECCchhH
Q psy12578 143 VVRYTPKVLE 152 (172)
Q Consensus 143 ~v~r~~~~~~ 152 (172)
+|.|++..+.
T Consensus 96 ~v~r~~~~~~ 105 (117)
T 1uit_A 96 LAQYNPHVHQ 105 (117)
T ss_dssp EECCCSCCCC
T ss_pred EEEECCchhh
Confidence 9999886543
No 135
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.55 E-value=4.9e-14 Score=96.70 Aligned_cols=88 Identities=27% Similarity=0.450 Sum_probs=76.0
Q ss_pred CCCEEEEEecCC-CCCCeEEeccC----CCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~----~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 136 (172)
..+++|.|.++. .+|||++.++. +...+++|..|.+++||+++|.|++||+|++|||+.+.++++.++..+++..
T Consensus 14 ~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 93 (122)
T 1v5q_A 14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 93 (122)
T ss_dssp EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred ceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 466788998874 99999999752 1235689999999999999988999999999999999999999999999876
Q ss_pred --CCeEEEEEEECCc
Q psy12578 137 --QRSVKLVVRYTPK 149 (172)
Q Consensus 137 --~~~v~l~v~r~~~ 149 (172)
+..+.|+|.|+..
T Consensus 94 ~~g~~v~l~v~R~~~ 108 (122)
T 1v5q_A 94 SITSKVTLEIEFDVA 108 (122)
T ss_dssp TTTTCEEEEEEEECC
T ss_pred CCCCeEEEEEEECCc
Confidence 5679999998763
No 136
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=1.6e-13 Score=90.24 Aligned_cols=83 Identities=20% Similarity=0.368 Sum_probs=71.6
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CC
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QR 138 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~ 138 (172)
....+.+.+.+...||||++... ..+++|..|.++ |+.+| |++||+|++|||+++.+++|.++.++|+.. +.
T Consensus 8 ~~~~~~v~l~~~~~g~G~~i~~~---~~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~ 81 (96)
T 1ujv_A 8 QAELMTLTIVKGAQGFGFTIADS---PTGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGS 81 (96)
T ss_dssp CCCCEEEEEECCSSSSSEEEEEE---TTEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTS
T ss_pred CceEEEEEEEeCCCceeEEEEcC---CCCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCC
Confidence 45678899999999999999753 236899999983 67787 999999999999999999999999999985 56
Q ss_pred eEEEEEEECCc
Q psy12578 139 SVKLVVRYTPK 149 (172)
Q Consensus 139 ~v~l~v~r~~~ 149 (172)
.+.|+|.|+..
T Consensus 82 ~v~l~v~R~g~ 92 (96)
T 1ujv_A 82 ETSLIIHRGSG 92 (96)
T ss_dssp EEEEEEECCSS
T ss_pred EEEEEEEECCC
Confidence 79999998764
No 137
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.54 E-value=6.2e-15 Score=99.69 Aligned_cols=86 Identities=27% Similarity=0.405 Sum_probs=74.5
Q ss_pred hccCCCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12578 57 ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 136 (172)
Q Consensus 57 ~~~~~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~ 136 (172)
....+..+++|+|.++..+|||.+.+. .+++|..|.+++||+++| |+.||+|++|||.++.++++.++..+++..
T Consensus 9 ~~~~~~~~r~v~l~~~~~~~G~~l~~~----~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~ 83 (111)
T 1vae_A 9 ASKRWSPPRGIHFTVEEGDLGFTLRGN----TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSF 83 (111)
T ss_dssp CCCEECCCCCCCEECCSSCCSCCEESS----SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHT
T ss_pred cccCCCCCeEEEEEcCCCcccEEEeCC----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 344456778899999989999999763 468999999999999999 999999999999999988999999999987
Q ss_pred CCe-EEEEEEEC
Q psy12578 137 QRS-VKLVVRYT 147 (172)
Q Consensus 137 ~~~-v~l~v~r~ 147 (172)
++. +.|+|.+.
T Consensus 84 ~~~~v~l~V~~~ 95 (111)
T 1vae_A 84 GGEEVEMKVVSL 95 (111)
T ss_dssp TTSEECEEEECE
T ss_pred CCceEEEEEEec
Confidence 664 99998764
No 138
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.54 E-value=3.1e-14 Score=98.24 Aligned_cols=83 Identities=25% Similarity=0.313 Sum_probs=73.4
Q ss_pred CCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCe
Q psy12578 62 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRS 139 (172)
Q Consensus 62 ~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~ 139 (172)
.....+.+.++..||||++.+. ..+++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++. .+..
T Consensus 26 ~~~~~~~l~k~~~glG~~i~~~---~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~ 102 (126)
T 1wif_A 26 NKVIQTKLTVGNLGLGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTV 102 (126)
T ss_dssp CCEEEEEEECCTTCCCCCEEEE---TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCE
T ss_pred CceEEEEEecCCceEeEEEEcC---CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCE
Confidence 3556788899999999999763 3468999999999999999899999999999999999999999999987 3567
Q ss_pred EEEEEEEC
Q psy12578 140 VKLVVRYT 147 (172)
Q Consensus 140 v~l~v~r~ 147 (172)
+.|+|.|+
T Consensus 103 v~l~V~R~ 110 (126)
T 1wif_A 103 LQIKAYRG 110 (126)
T ss_dssp EEEEEESS
T ss_pred EEEEEEEC
Confidence 99999987
No 139
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.53 E-value=1.6e-13 Score=92.86 Aligned_cols=86 Identities=33% Similarity=0.549 Sum_probs=74.1
Q ss_pred CCCEEEEEec-CCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 62 AHPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 62 ~~~~~v~l~~-~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
..++++.+.+ +..+|||++.++.+...+++|..|.++++|+++| |++||+|++|||+++.++.+.++..+++.. ..+
T Consensus 14 ~~~~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v 91 (114)
T 1x5n_A 14 NKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSL 91 (114)
T ss_dssp CSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSE
T ss_pred CCcEEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeE
Confidence 4567888865 4589999999876666789999999999999999 999999999999999999988888888876 579
Q ss_pred EEEEEEC-Cc
Q psy12578 141 KLVVRYT-PK 149 (172)
Q Consensus 141 ~l~v~r~-~~ 149 (172)
.|+|.|+ +.
T Consensus 92 ~l~v~r~~g~ 101 (114)
T 1x5n_A 92 TISIVAAAGR 101 (114)
T ss_dssp EEEECSSTTT
T ss_pred EEEEEcCCCC
Confidence 9999887 53
No 140
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4e-14 Score=96.10 Aligned_cols=86 Identities=26% Similarity=0.509 Sum_probs=72.9
Q ss_pred CCCEEEEEecCCC---CCCeEEeccCCCC-CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12578 62 AHPRVVELPKTDE---GLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 137 (172)
Q Consensus 62 ~~~~~v~l~~~~~---g~G~~l~~~~~~~-~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~ 137 (172)
..++.++|.+... +|||++.+..+.. .+++|..|.+++||+++| |++||+|++|||.++.++++.++..+++..
T Consensus 14 ~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~- 91 (114)
T 2d8i_A 14 KVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQP- 91 (114)
T ss_dssp CEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTSS-
T ss_pred CceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC-
Confidence 3568899998764 7999998743322 469999999999999999 999999999999999999899999988753
Q ss_pred CeEEEEEEECCch
Q psy12578 138 RSVKLVVRYTPKV 150 (172)
Q Consensus 138 ~~v~l~v~r~~~~ 150 (172)
.+.|+|.|.|..
T Consensus 92 -~v~l~v~R~p~~ 103 (114)
T 2d8i_A 92 -SLGLLVRTYPEL 103 (114)
T ss_dssp -EEEEEEEECCCS
T ss_pred -cEEEEEEECCCC
Confidence 899999998743
No 141
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.52 E-value=1.4e-13 Score=101.81 Aligned_cols=87 Identities=33% Similarity=0.500 Sum_probs=77.2
Q ss_pred CCCCEEEEEecC-CCCCCeEEeccCCCCCCeEEEeecCCChhhhc-CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 61 HAHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRH-GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 61 ~~~~~~v~l~~~-~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~-G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
+..++.+.|.+. ..+|||++.++.+...+++|..|.++|||+++ | |+.||+|++|||+++.+++|.++..+++..+.
T Consensus 5 ~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~agg-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~ 83 (200)
T 2qt5_A 5 FKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQ-LDVGDYIKAVNGINLAKFRHDEIISLLKNVGE 83 (200)
T ss_dssp CEEEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTS-CCTTCEEEEETTEECTTSCHHHHHHHHHTCCS
T ss_pred cCCCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 345678888774 58999999998776678999999999999999 6 99999999999999999999999999998888
Q ss_pred eEEEEEEECC
Q psy12578 139 SVKLVVRYTP 148 (172)
Q Consensus 139 ~v~l~v~r~~ 148 (172)
.+.|+|.|..
T Consensus 84 ~v~l~v~R~~ 93 (200)
T 2qt5_A 84 RVVLEVEYEL 93 (200)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEeccC
Confidence 8999998864
No 142
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.51 E-value=2e-13 Score=90.86 Aligned_cols=82 Identities=34% Similarity=0.551 Sum_probs=67.9
Q ss_pred EEEEEecCC----CCCCeEEeccCCC------------CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHH
Q psy12578 65 RVVELPKTD----EGLGFNVMGGKEQ------------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 128 (172)
Q Consensus 65 ~~v~l~~~~----~g~G~~l~~~~~~------------~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~ 128 (172)
..+++.+.. .+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||.++.+.++.+
T Consensus 6 ~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~ 84 (104)
T 3sfj_A 6 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQ 84 (104)
T ss_dssp EEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHH
T ss_pred EEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence 345665533 3699999965542 4579999999999999999 9999999999999999999999
Q ss_pred HHHHHHhC-CCeEEEEEEEC
Q psy12578 129 AVELLKQA-QRSVKLVVRYT 147 (172)
Q Consensus 129 ~~~~l~~~-~~~v~l~v~r~ 147 (172)
+...++.. +..+.|+|.|.
T Consensus 85 ~~~~l~~~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 85 ARKRLTKRSEEVVRLLVTRQ 104 (104)
T ss_dssp HHHHHTCTTCSEEEEEEEEC
T ss_pred HHHHHHhCCCCEEEEEEEcC
Confidence 99999865 46799999773
No 143
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.51 E-value=1.2e-13 Score=96.89 Aligned_cols=87 Identities=31% Similarity=0.486 Sum_probs=73.1
Q ss_pred CCEEEEEecCC----CCCCeEEeccCC------------CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy12578 63 HPRVVELPKTD----EGLGFNVMGGKE------------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 126 (172)
Q Consensus 63 ~~~~v~l~~~~----~g~G~~l~~~~~------------~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~ 126 (172)
..+.|.|.+.. .+|||++.++.+ ...+++|..|.++|||+++| |++||+|++|||.++.++++
T Consensus 23 ~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~ 101 (139)
T 2vz5_A 23 MVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTH 101 (139)
T ss_dssp EEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred ceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCCH
Confidence 55778887743 479999987654 23589999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhC-CCeEEEEEEECCch
Q psy12578 127 GKAVELLKQA-QRSVKLVVRYTPKV 150 (172)
Q Consensus 127 ~~~~~~l~~~-~~~v~l~v~r~~~~ 150 (172)
.++..+++.. +..+.|+|.|++..
T Consensus 102 ~~~~~~l~~~~g~~v~l~v~R~g~~ 126 (139)
T 2vz5_A 102 DQARKRLTKRSEEVVRLLVTRQSLQ 126 (139)
T ss_dssp HHHHHHHCCTTCSEEEEEEEECC--
T ss_pred HHHHHHHHhCCCCEEEEEEEECCEE
Confidence 9999999874 56799999998754
No 144
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.51 E-value=2.1e-14 Score=95.65 Aligned_cols=83 Identities=30% Similarity=0.459 Sum_probs=72.1
Q ss_pred EEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12578 65 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144 (172)
Q Consensus 65 ~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v 144 (172)
+++.+ ++..+|||++.++.+...+++|..|.+++||+++| |++||+|++|||.++.++++.++..+++..+..+.|+|
T Consensus 7 ~~v~~-~~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 84 (103)
T 1v5l_A 7 GNVVL-PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI 84 (103)
T ss_dssp BCCEE-ESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEE
T ss_pred EEEEE-cCCCCcCEEEeccccCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 34444 35579999999877655579999999999999999 99999999999999999999999999998877899999
Q ss_pred EECCc
Q psy12578 145 RYTPK 149 (172)
Q Consensus 145 ~r~~~ 149 (172)
.|+..
T Consensus 85 ~R~g~ 89 (103)
T 1v5l_A 85 DRAET 89 (103)
T ss_dssp CCCTT
T ss_pred EECCe
Confidence 98874
No 145
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-15 Score=103.15 Aligned_cols=84 Identities=45% Similarity=0.687 Sum_probs=73.6
Q ss_pred CCCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 61 HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADR-HGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 61 ~~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~-~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
+..++++.+.+.. .+|||++.++.+...+++|..|.++|||++ +| |++||+|++|||.++.+.++.++..+++..++
T Consensus 25 ~~~~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~ 103 (112)
T 2lob_A 25 FQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRG 103 (112)
Confidence 3466788888865 899999998776566899999999999999 77 99999999999999999999999999988877
Q ss_pred eEEEEEE
Q psy12578 139 SVKLVVR 145 (172)
Q Consensus 139 ~v~l~v~ 145 (172)
.+.|+|.
T Consensus 104 ~v~l~V~ 110 (112)
T 2lob_A 104 EIEFEVV 110 (112)
Confidence 7888775
No 146
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=113.26 Aligned_cols=88 Identities=24% Similarity=0.452 Sum_probs=79.2
Q ss_pred CEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEE
Q psy12578 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVK 141 (172)
Q Consensus 64 ~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~ 141 (172)
+++|++.++ .+|||++.++.+ .|++|..|.+||||+++| |++||+|++|||.++.++++.+++.+|+. .++.++
T Consensus 2 ~r~V~l~k~-~~lG~~i~gg~~--~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~ 77 (468)
T 3shw_A 2 MKLVKFRKG-DSVGLRLAGGND--VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVT 77 (468)
T ss_dssp EEEEEEECC-SSCCEEEEEETT--TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEE
T ss_pred ceEEEEecC-CccceEEEccCc--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEE
Confidence 578899886 899999998763 679999999999999999 99999999999999999999999999998 677899
Q ss_pred EEEEECCchhHHHH
Q psy12578 142 LVVRYTPKVLEEME 155 (172)
Q Consensus 142 l~v~r~~~~~~~~~ 155 (172)
|+|.|++..+..+.
T Consensus 78 L~V~r~g~~~~~~~ 91 (468)
T 3shw_A 78 ILAQKKKDVYRRIV 91 (468)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEEECCccchhhh
Confidence 99999987766654
No 147
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.50 E-value=3.6e-13 Score=87.58 Aligned_cols=77 Identities=27% Similarity=0.475 Sum_probs=64.9
Q ss_pred CCEEEEEec--CCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 63 HPRVVELPK--TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 63 ~~~~v~l~~--~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
..+.+.+.+ ...+|||.+.+ + +|..|.++|||+++| |+.||+|++|||.++.+.++.++..+++..+..+
T Consensus 11 ~~~~~~i~~~~~~~~lG~~~~~------G-~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v 82 (90)
T 1y7n_A 11 NVTTVLIRRPDLRYQLGFSVQN------G-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEI 82 (90)
T ss_dssp SCEEEEEEESSTTSCCCEEEET------T-EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEE
T ss_pred CcceEEEEeCCCccccCeEecC------C-EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 334444444 45789999864 2 899999999999999 9999999999999999999999999999888789
Q ss_pred EEEEEEC
Q psy12578 141 KLVVRYT 147 (172)
Q Consensus 141 ~l~v~r~ 147 (172)
.|+|.+.
T Consensus 83 ~l~v~p~ 89 (90)
T 1y7n_A 83 HMKTMPA 89 (90)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 9998653
No 148
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.50 E-value=1.6e-13 Score=119.20 Aligned_cols=94 Identities=37% Similarity=0.626 Sum_probs=83.1
Q ss_pred hhccCCCCCEEEEEecCCCCCCeEEeccCCC-----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHH
Q psy12578 56 AASEGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAV 130 (172)
Q Consensus 56 ~~~~~~~~~~~v~l~~~~~g~G~~l~~~~~~-----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~ 130 (172)
........+++|.|.++..||||+|.||.+. ..+++|..|.+||||+++|+|+.||+|++|||.++.+++|.+++
T Consensus 52 ~~~~~~~~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~ 131 (721)
T 2xkx_A 52 NGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAV 131 (721)
T ss_pred CCCCCCceEEEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 3334456778999999999999999998754 56799999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEECCc
Q psy12578 131 ELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 131 ~~l~~~~~~v~l~v~r~~~ 149 (172)
.+++..+..|.|+|.|...
T Consensus 132 ~~l~~~g~~v~l~v~R~~~ 150 (721)
T 2xkx_A 132 EALKEAGSIVRLYVMRRKP 150 (721)
T ss_pred HHhhccccccceEEEeccc
Confidence 9999988889999988763
No 149
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.49 E-value=6.1e-13 Score=89.67 Aligned_cols=84 Identities=31% Similarity=0.448 Sum_probs=72.6
Q ss_pred EEEEEecC-CCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEE
Q psy12578 65 RVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGL-KRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVK 141 (172)
Q Consensus 65 ~~v~l~~~-~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L-~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~v~ 141 (172)
.+|.|.++ ..||||.+.+..+ ..+++|..|.++|||+++| | +.||+|++|||..+.++++.++..+++.. +..+.
T Consensus 3 ~~v~l~~~~~~glG~~~~~~~~-~~~~~V~~v~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~ 80 (112)
T 1qau_A 3 ISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV 80 (112)
T ss_dssp EEEEEECBTTTBTSEEEEECSS-SSCEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEE
T ss_pred EEEEEEcCCCCceeEEEEecCC-CCCEEEEEeCCCChHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEE
Confidence 46788776 4899999987542 4579999999999999999 7 99999999999999999999999999875 46799
Q ss_pred EEEEECCch
Q psy12578 142 LVVRYTPKV 150 (172)
Q Consensus 142 l~v~r~~~~ 150 (172)
|++.|++..
T Consensus 81 l~v~R~g~~ 89 (112)
T 1qau_A 81 VLILRGPEG 89 (112)
T ss_dssp EEEEECCTT
T ss_pred EEEEeCCcc
Confidence 999998754
No 150
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.48 E-value=4.4e-13 Score=98.64 Aligned_cols=72 Identities=36% Similarity=0.656 Sum_probs=66.1
Q ss_pred CCCCCeEEeccCC--------CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12578 73 DEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 144 (172)
Q Consensus 73 ~~g~G~~l~~~~~--------~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v 144 (172)
+.||||+|.|+.+ ...+++|..|.++|||++ | |++||+|++|||+++.++++.+++.+++..++.+.|+|
T Consensus 1 ~~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 78 (195)
T 2qbw_A 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 78 (195)
T ss_dssp CCCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEE
T ss_pred CCcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 3689999999763 246899999999999999 8 99999999999999999999999999999988999999
Q ss_pred EE
Q psy12578 145 RY 146 (172)
Q Consensus 145 ~r 146 (172)
.|
T Consensus 79 ~r 80 (195)
T 2qbw_A 79 VR 80 (195)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 151
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.48 E-value=3.3e-13 Score=93.22 Aligned_cols=87 Identities=39% Similarity=0.551 Sum_probs=73.8
Q ss_pred CCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 63 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 63 ~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
..+++.+.... .+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||..+.++++.+++..++.. ..+.
T Consensus 20 ~~~~v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~v~ 97 (128)
T 1uf1_A 20 DEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLI 97 (128)
T ss_dssp SEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEE
T ss_pred cEEEEEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEE
Confidence 45667777654 78999999866555689999999999999999 999999999999999999898888888764 5899
Q ss_pred EEEEECCchh
Q psy12578 142 LVVRYTPKVL 151 (172)
Q Consensus 142 l~v~r~~~~~ 151 (172)
|+|.|++...
T Consensus 98 l~v~R~g~~~ 107 (128)
T 1uf1_A 98 LTVKDVGRLP 107 (128)
T ss_dssp EEEECCSCCS
T ss_pred EEEEECCccc
Confidence 9999987543
No 152
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.46 E-value=9.7e-13 Score=86.74 Aligned_cols=79 Identities=22% Similarity=0.380 Sum_probs=68.8
Q ss_pred CEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh---CCCeE
Q psy12578 64 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ---AQRSV 140 (172)
Q Consensus 64 ~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~---~~~~v 140 (172)
.+.+.+.+...||||.+... ..+++|..|.+||||+.+| |++||+|++|||..+...+++++...++. .++.+
T Consensus 18 ~~~l~l~~~~~g~G~~l~~~---~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v 93 (101)
T 3qik_A 18 AKRLLILPQEEDYGFDIEEK---NKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPL 93 (101)
T ss_dssp EEEEEECCCSSSSSEEEEEE---TTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCE
T ss_pred cCeEEEEeCCCcccEEEEcc---CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeE
Confidence 35678888889999999863 3468999999999999999 99999999999999988899999999987 47789
Q ss_pred EEEEEE
Q psy12578 141 KLVVRY 146 (172)
Q Consensus 141 ~l~v~r 146 (172)
.|.|..
T Consensus 94 ~LLV~~ 99 (101)
T 3qik_A 94 RLLVAT 99 (101)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 998864
No 153
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.44 E-value=4.2e-13 Score=92.53 Aligned_cols=87 Identities=30% Similarity=0.445 Sum_probs=75.6
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHHHhC-CC
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGL-KRGDQLLSVNGVSVEGEDHGKAVELLKQA-QR 138 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L-~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~ 138 (172)
...+.|++.++. .+|||++.+..+ ..+++|..|.++|||+++| | +.||+|++|||..+.++++.++..+++.. +.
T Consensus 7 ~~~~~v~l~~~~~~glG~~~~~~~~-~~~~~V~~V~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~ 84 (127)
T 1b8q_A 7 PNVISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE 84 (127)
T ss_dssp CCSEEEEEECTTTSCCSCCEEECTT-SSCEEECCCSSSSSHHHHS-SCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSS
T ss_pred CceEEEEEEeCCCCcEeEEEEecCC-CCCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence 467889998876 899999987542 3579999999999999999 7 99999999999999999999999999875 45
Q ss_pred eEEEEEEECCch
Q psy12578 139 SVKLVVRYTPKV 150 (172)
Q Consensus 139 ~v~l~v~r~~~~ 150 (172)
.+.|+|.|++..
T Consensus 85 ~v~l~v~R~g~~ 96 (127)
T 1b8q_A 85 THVVLILRGPEG 96 (127)
T ss_dssp CEEEEEECCCCS
T ss_pred eEEEEEEeCCce
Confidence 699999998754
No 154
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=103.36 Aligned_cols=87 Identities=30% Similarity=0.544 Sum_probs=76.4
Q ss_pred CCCCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 61 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 61 ~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
...++.|+|.++..||||.+.++.+ ..+++|..|.++++|+++| |+.||+|++|||..+.++++.++..+++..+..+
T Consensus 7 ~~~~r~v~l~k~~~glG~~l~~~~~-~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v 84 (216)
T 2krg_A 7 MLRPRLCTMKKGPSGYGFNLHSDKS-KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET 84 (216)
T ss_dssp TCCCEEEEEECCSSSSCEEECCCSS-SCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEE
T ss_pred ccceEEEEEEeCCCCceEEEEecCC-CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeE
Confidence 3578999999999999999987543 3479999999999999999 9999999999999999889999999998877778
Q ss_pred -EEEEEECCc
Q psy12578 141 -KLVVRYTPK 149 (172)
Q Consensus 141 -~l~v~r~~~ 149 (172)
.|+|.|.+.
T Consensus 85 ~~l~V~R~g~ 94 (216)
T 2krg_A 85 KLLVVDRETD 94 (216)
T ss_dssp EEEECCHHHH
T ss_pred EEEEEEECCE
Confidence 888877653
No 155
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.43 E-value=1.1e-12 Score=96.26 Aligned_cols=86 Identities=37% Similarity=0.597 Sum_probs=74.6
Q ss_pred CEEEEEecCCCCCCeEEeccCCC-----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12578 64 PRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 138 (172)
Q Consensus 64 ~~~v~l~~~~~g~G~~l~~~~~~-----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~ 138 (172)
..++.+.+...+|||++.++... ..+++|..|.++|+|+++|+|++||+|++|||+++.++++.++..+++..++
T Consensus 101 ~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~ 180 (196)
T 3gsl_A 101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD 180 (196)
T ss_dssp EEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCE
T ss_pred cEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCC
Confidence 45667777778999999875432 2479999999999999998899999999999999999999999999998888
Q ss_pred eEEEEEEECCc
Q psy12578 139 SVKLVVRYTPK 149 (172)
Q Consensus 139 ~v~l~v~r~~~ 149 (172)
.+.|+|.|+..
T Consensus 181 ~v~l~v~R~~~ 191 (196)
T 3gsl_A 181 VVYLKVAKPSN 191 (196)
T ss_dssp EEEEEEEEESC
T ss_pred eEEEEEeCCCC
Confidence 89999998764
No 156
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.43 E-value=2.7e-12 Score=83.31 Aligned_cols=82 Identities=28% Similarity=0.499 Sum_probs=67.7
Q ss_pred CCEEEEEecCC--CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 63 HPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 63 ~~~~v~l~~~~--~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
.+..+++.+.. ..|||.+. .+++|..|.++|+|+++|.|+.||+|++|||.++.++++.++..+++..++.+
T Consensus 2 ~~~~v~~~~~~~~~~~g~~~~------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v 75 (92)
T 3cyy_A 2 KPTKVTLVKSAKNEEYGLRLA------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKL 75 (92)
T ss_dssp CCEEEEEECSSTTSCCCEEEE------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred CcEEEEEEeCCCCCCCCEEEe------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcE
Confidence 34566776643 68999885 25999999999999999889999999999999999899999999999887789
Q ss_pred EEEEEECCch
Q psy12578 141 KLVVRYTPKV 150 (172)
Q Consensus 141 ~l~v~r~~~~ 150 (172)
.|+|.|++..
T Consensus 76 ~l~v~r~g~~ 85 (92)
T 3cyy_A 76 KMVVQRDERA 85 (92)
T ss_dssp EEEEEC----
T ss_pred EEEEEeCCce
Confidence 9999887743
No 157
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.43 E-value=7.9e-13 Score=107.30 Aligned_cols=87 Identities=25% Similarity=0.460 Sum_probs=76.2
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSV 140 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v 140 (172)
..+.+.+.++. +|||++.++. ..|++|..|.+||||+++| |++||+|++|||.++.++++++++.+++. .+..+
T Consensus 9 ~~~~v~~~k~~-~lG~~i~gg~--~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v 84 (391)
T 3tsz_A 9 SMKLVKFRKGD-SVGLRLAGGN--DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV 84 (391)
T ss_dssp CEEEEEEECCS-SCCEEEEEET--TTEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEE
T ss_pred CcEEEEeecCC-ceeEEEEecC--CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeE
Confidence 55777887765 7999999865 3679999999999999999 99999999999999999999999999996 66789
Q ss_pred EEEEEECCchhHH
Q psy12578 141 KLVVRYTPKVLEE 153 (172)
Q Consensus 141 ~l~v~r~~~~~~~ 153 (172)
+|+|.|++..+..
T Consensus 85 ~l~v~r~~~~~~~ 97 (391)
T 3tsz_A 85 TILAQKKKDVYRR 97 (391)
T ss_dssp EEEEEECHHHHGG
T ss_pred EEEEeeCCccccc
Confidence 9999998865544
No 158
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.42 E-value=1.7e-12 Score=95.81 Aligned_cols=87 Identities=28% Similarity=0.439 Sum_probs=76.1
Q ss_pred CCEEEEEecCC-CCCCeEEeccCC----CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-
Q psy12578 63 HPRVVELPKTD-EGLGFNVMGGKE----QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA- 136 (172)
Q Consensus 63 ~~~~v~l~~~~-~g~G~~l~~~~~----~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~- 136 (172)
+.++|.|.++. .||||++.++.+ ...+++|..|.++|||+++|.|+.||+|++|||..+.++++.++..+++..
T Consensus 6 ~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~ 85 (196)
T 1p1d_A 6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS 85 (196)
T ss_dssp EEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCC
T ss_pred EEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 55778898875 899999998743 234699999999999999988999999999999999988999999999987
Q ss_pred -CCeEEEEEEECCc
Q psy12578 137 -QRSVKLVVRYTPK 149 (172)
Q Consensus 137 -~~~v~l~v~r~~~ 149 (172)
+..+.|+|.|++.
T Consensus 86 ~g~~v~l~v~R~~~ 99 (196)
T 1p1d_A 86 ITSKVTLEIEFDVA 99 (196)
T ss_dssp SSSEEEEEEEECSC
T ss_pred CCCeEEEEEEecCC
Confidence 5679999998874
No 159
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.40 E-value=4e-12 Score=82.27 Aligned_cols=80 Identities=16% Similarity=0.252 Sum_probs=66.1
Q ss_pred EEEEEecCC---CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCe
Q psy12578 65 RVVELPKTD---EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRS 139 (172)
Q Consensus 65 ~~v~l~~~~---~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~ 139 (172)
..+.+.+.. .+|||++... ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++..+++. .+..
T Consensus 5 ~~~~~~~~~~~~~~lG~~~~~~---~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~ 80 (90)
T 2eaq_A 5 MRISINQTPGKSLDFGFTIKWD---IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGH 80 (90)
T ss_dssp EEEEEECCTTCSSCCSEEEEEE---TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTE
T ss_pred eEEEEEecCCCCCcccEEEEec---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCE
Confidence 345555543 3799998753 3479999999999999999 99999999999999987889999998885 4678
Q ss_pred EEEEEEECC
Q psy12578 140 VKLVVRYTP 148 (172)
Q Consensus 140 v~l~v~r~~ 148 (172)
+.|+|.|++
T Consensus 81 v~l~v~R~g 89 (90)
T 2eaq_A 81 LVMDVRRYG 89 (90)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeCC
Confidence 999998865
No 160
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.40 E-value=2.8e-12 Score=111.40 Aligned_cols=94 Identities=39% Similarity=0.744 Sum_probs=83.1
Q ss_pred CCEEEEEecCCCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 63 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 63 ~~~~v~l~~~~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
.++.|.|.+...+|||++.++.+ ..+++|..|.+||+|+++|+|++||+|++|||.++.++++++++.+++..++.+.|
T Consensus 307 ~~~~v~l~~~~~~lG~~i~~~~~-~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L 385 (721)
T 2xkx_A 307 EPRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 385 (721)
T ss_pred ceEEEEEEECCCCccEEEeccCC-CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEE
Confidence 46788899888899999987643 45799999999999999999999999999999999999999999999998888999
Q ss_pred EEEECCchhHHHHHH
Q psy12578 143 VVRYTPKVLEEMEMR 157 (172)
Q Consensus 143 ~v~r~~~~~~~~~~~ 157 (172)
+|.|++..+..++..
T Consensus 386 ~v~r~~~~~~~~~~~ 400 (721)
T 2xkx_A 386 IAQYKPEEYSRFEAK 400 (721)
T ss_pred EEEeCchhhhhhhhh
Confidence 999999777655433
No 161
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.37 E-value=4.6e-12 Score=93.64 Aligned_cols=88 Identities=38% Similarity=0.688 Sum_probs=74.6
Q ss_pred CEEEEEecCCCCCCeEEeccCCC----CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 64 PRVVELPKTDEGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 64 ~~~v~l~~~~~g~G~~l~~~~~~----~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
...+++.+...+|||.+.++... ..+++|..|.++|+|+++|.|++||+|++|||.++.++++.++..+++..+..
T Consensus 107 ~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~ 186 (200)
T 2qt5_A 107 TVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 186 (200)
T ss_dssp EEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSE
T ss_pred EEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 34566666778899999876432 34789999999999999988999999999999999999999999999997778
Q ss_pred EEEEEEECCchh
Q psy12578 140 VKLVVRYTPKVL 151 (172)
Q Consensus 140 v~l~v~r~~~~~ 151 (172)
+.|+|.|++..+
T Consensus 187 v~l~v~R~~~~~ 198 (200)
T 2qt5_A 187 ATLLIEYDVSVM 198 (200)
T ss_dssp EEEEEEEEEEC-
T ss_pred EEEEEEECCccC
Confidence 999999987554
No 162
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.36 E-value=1.4e-11 Score=88.60 Aligned_cols=83 Identities=30% Similarity=0.456 Sum_probs=70.7
Q ss_pred CCCEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-Ce
Q psy12578 62 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-RS 139 (172)
Q Consensus 62 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~-~~ 139 (172)
..++.|.+.+.. .+|||.+... ..+++|..|.++|||+++| |+.||+|++|||.++.+++++.+..+++... ..
T Consensus 3 ~~~r~v~l~k~~~~~lG~~~~~~---~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~ 78 (166)
T 1w9e_A 3 MDPREVILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEK 78 (166)
T ss_dssp CCCEEEEEECCTTSCCSEEEEEE---TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSE
T ss_pred CCCEEEEEEeCCCCcEeEEEEeC---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCE
Confidence 367999999966 6899999873 3579999999999999999 9999999999999999998877777777755 47
Q ss_pred EEEEEEECC
Q psy12578 140 VKLVVRYTP 148 (172)
Q Consensus 140 v~l~v~r~~ 148 (172)
+.|+|++.+
T Consensus 79 v~l~vr~~~ 87 (166)
T 1w9e_A 79 ITMTIRDRP 87 (166)
T ss_dssp EEEEEECCT
T ss_pred EEEEEEcCC
Confidence 999996553
No 163
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.36 E-value=5.9e-12 Score=93.28 Aligned_cols=82 Identities=26% Similarity=0.323 Sum_probs=70.7
Q ss_pred CEEEEEecCC-CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12578 64 PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 142 (172)
Q Consensus 64 ~~~v~l~~~~-~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l 142 (172)
..++.+.+.. .++||++... ..+++|..|.++|+|+++|+|+.||+|++|||+++.++++.++..+++..++.+.|
T Consensus 114 ~~~v~l~~~~~~~lG~~~~~~---~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L 190 (206)
T 3r0h_A 114 KFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSM 190 (206)
T ss_dssp EEEEEEECCTTCCCCEEEEEC---SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred EEEEEEecCCCCccCeEEEcC---CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 3455665554 6899999853 35799999999999999988999999999999999999999999999998889999
Q ss_pred EEEECC
Q psy12578 143 VVRYTP 148 (172)
Q Consensus 143 ~v~r~~ 148 (172)
+|.|..
T Consensus 191 ~V~R~~ 196 (206)
T 3r0h_A 191 EVTRPK 196 (206)
T ss_dssp EEEEEC
T ss_pred EEEeCC
Confidence 998854
No 164
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.34 E-value=2.6e-11 Score=76.61 Aligned_cols=68 Identities=26% Similarity=0.502 Sum_probs=60.8
Q ss_pred CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEEC
Q psy12578 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 147 (172)
Q Consensus 74 ~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 147 (172)
..|||.+.. +++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++..++.+.|+|.|+
T Consensus 13 ~~~g~~~~~------gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~ 80 (81)
T 2rcz_A 13 EEYGLRLAS------HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 80 (81)
T ss_dssp CCCCEEEEE------EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred CCCCEEEeC------CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence 688998863 59999999999999998899999999999999999999999999998777899999775
No 165
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=1.3e-11 Score=84.05 Aligned_cols=87 Identities=21% Similarity=0.329 Sum_probs=68.5
Q ss_pred CCEEEEEec---CC-CCCCeEEeccC---CCCCCeEEEeecC--CChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12578 63 HPRVVELPK---TD-EGLGFNVMGGK---EQNSPIYISRIIP--GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 133 (172)
Q Consensus 63 ~~~~v~l~~---~~-~g~G~~l~~~~---~~~~~~~V~~v~~--g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l 133 (172)
.++++++.+ .. +.+||.+.... +...+++|..|.+ ++||+++| |+.||+|++|||..+.++++.++..++
T Consensus 12 ~~~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l 90 (118)
T 2yub_A 12 LPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAI 90 (118)
T ss_dssp SCCEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHH
T ss_pred CCceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHH
Confidence 456666655 22 34566655321 2245799999999 99999999 999999999999999999999999999
Q ss_pred HhCCCeEEEEEEECCch
Q psy12578 134 KQAQRSVKLVVRYTPKV 150 (172)
Q Consensus 134 ~~~~~~v~l~v~r~~~~ 150 (172)
+..+..+.|+|.|++..
T Consensus 91 ~~~g~~v~l~v~R~g~~ 107 (118)
T 2yub_A 91 KQTSQTLQLLIEHDPVP 107 (118)
T ss_dssp HCCSSCEEEEEEECSSC
T ss_pred HhCCCEEEEEEEECCEE
Confidence 87766799999998743
No 166
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.27 E-value=1.5e-11 Score=84.41 Aligned_cols=86 Identities=27% Similarity=0.521 Sum_probs=69.1
Q ss_pred CCEEEEEecCC--CCCCeEEeccCCC--CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-C
Q psy12578 63 HPRVVELPKTD--EGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-Q 137 (172)
Q Consensus 63 ~~~~v~l~~~~--~g~G~~l~~~~~~--~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~ 137 (172)
..+.+.+.+.. .+|||++...... ..+++|..|.+++||+++|+|++||+|++|||+.+. ++.++..+++.. +
T Consensus 19 ~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g 96 (124)
T 1wh1_A 19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEEN 96 (124)
T ss_dssp EECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSC
T ss_pred eEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCCC
Confidence 33445666644 5899999874321 257999999999999999889999999999999996 478999999875 5
Q ss_pred CeEEEEEEECCch
Q psy12578 138 RSVKLVVRYTPKV 150 (172)
Q Consensus 138 ~~v~l~v~r~~~~ 150 (172)
..+.|+|.|++..
T Consensus 97 ~~v~l~v~R~g~~ 109 (124)
T 1wh1_A 97 KNFSLLIARPELQ 109 (124)
T ss_dssp CSCCEEEEECSSC
T ss_pred CEEEEEEEECCEE
Confidence 5699999998754
No 167
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.27 E-value=2.6e-11 Score=98.32 Aligned_cols=97 Identities=28% Similarity=0.373 Sum_probs=78.5
Q ss_pred hhhccCCCCCEEEEEecC-CCCCCeEEeccCC--CCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHH
Q psy12578 55 FAASEGHAHPRVVELPKT-DEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVE 131 (172)
Q Consensus 55 ~~~~~~~~~~~~v~l~~~-~~g~G~~l~~~~~--~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~ 131 (172)
+.........+.|.+.+. +.+|||++.+... ...+++|..|.+||||+++|+|+.||+|++|||.++.++++.++..
T Consensus 196 ~~~~~~~~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~ 275 (388)
T 3suz_A 196 LIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQG 275 (388)
T ss_dssp HHHTCCSSCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHH
T ss_pred hhhhcccccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHH
Confidence 333444556788999986 5899999987431 1235899999999999999999999999999999999999999999
Q ss_pred HHHhC--CCeEEEEEEECCchh
Q psy12578 132 LLKQA--QRSVKLVVRYTPKVL 151 (172)
Q Consensus 132 ~l~~~--~~~v~l~v~r~~~~~ 151 (172)
+++.. +..+.|+|.|.+...
T Consensus 276 ~l~~~~~~~~v~l~v~r~~~~~ 297 (388)
T 3suz_A 276 IIKGLKNQTQVKLNIVSCPPVT 297 (388)
T ss_dssp HTTTCTTCSCEEEEEEECCSCC
T ss_pred HHHhccCCCccccccccccccc
Confidence 99886 345999999987543
No 168
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.19 E-value=2.4e-10 Score=84.10 Aligned_cols=85 Identities=33% Similarity=0.525 Sum_probs=71.4
Q ss_pred CEEEEEecC-CCCCCeEEeccCCC--CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12578 64 PRVVELPKT-DEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 140 (172)
Q Consensus 64 ~~~v~l~~~-~~g~G~~l~~~~~~--~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 140 (172)
...+.+.+. ..+|||.+...... ..+++|..|.++|+|+++|+|++||+|++|||.++.++++.++..+++..+..+
T Consensus 108 ~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v 187 (196)
T 1p1d_A 108 TFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLV 187 (196)
T ss_dssp CEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCE
T ss_pred cEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEE
Confidence 355666643 36799999874321 357999999999999999889999999999999999988999999999887789
Q ss_pred EEEEEECC
Q psy12578 141 KLVVRYTP 148 (172)
Q Consensus 141 ~l~v~r~~ 148 (172)
.|+|.|+.
T Consensus 188 ~l~v~R~~ 195 (196)
T 1p1d_A 188 KLKIRKDE 195 (196)
T ss_dssp EEEEECCC
T ss_pred EEEEEeCC
Confidence 99998864
No 169
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.92 E-value=1.1e-08 Score=71.02 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=51.6
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 150 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~ 150 (172)
..+++|..|.++|||+ +| |+.||+|++|||..+.+ ..++...+... +..+.|+|.|+++.
T Consensus 56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~ 117 (134)
T 2l97_A 56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIAS--STDLQSALYNHSIGDTIKITYYRNGKE 117 (134)
T ss_dssp CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCC--HHHHHHHHHHSSTTCEEEEEEEETTEE
T ss_pred CCCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 3579999999999999 98 99999999999999965 47787777764 67799999998754
No 170
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.88 E-value=1.3e-08 Score=68.29 Aligned_cols=60 Identities=23% Similarity=0.428 Sum_probs=52.4
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 150 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 150 (172)
..+++|..|.++|||+.+| |++||.|++|||..+. +..++..+++. +..+.|+|.|++..
T Consensus 34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~v~R~g~~ 93 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRET 93 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEEEEETTEE
T ss_pred CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEEEEECCEE
Confidence 3579999999999999999 9999999999999996 46888888877 56799999998753
No 171
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.84 E-value=1.6e-09 Score=70.30 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=50.2
Q ss_pred CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12578 89 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 150 (172)
Q Consensus 89 ~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~ 150 (172)
|++|..|.++|||+. | |++||+|++|||.++.+ ..++..++... +..+.|+|.|++..
T Consensus 2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~ 61 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIEREEKE 61 (91)
T ss_dssp CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence 477889999999999 8 99999999999999964 57888888765 66799999998754
No 172
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.84 E-value=2.8e-08 Score=65.38 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=50.8
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 150 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~ 150 (172)
..|++|..|.++|||+. | |++||+|++|||..+.+ ..++..++... +..+.|+|.|++..
T Consensus 6 ~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~~ 67 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKINYKHGDKN 67 (100)
T ss_dssp CCCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred CCCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 35799999999999995 8 99999999999999964 57888888763 56799999998754
No 173
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.83 E-value=8.1e-09 Score=67.28 Aligned_cols=60 Identities=17% Similarity=0.364 Sum_probs=51.6
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 150 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~ 150 (172)
..+++|..|.++|||+. | |+.||+|++|||.++.+ ..++..++... +..+.|+|.|++..
T Consensus 4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~ 65 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRDRKQ 65 (94)
T ss_dssp CCCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEETTEE
T ss_pred CCcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 34689999999999998 8 99999999999999965 57888888774 66799999998754
No 174
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.82 E-value=2.3e-08 Score=80.92 Aligned_cols=75 Identities=23% Similarity=0.446 Sum_probs=63.2
Q ss_pred CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEECCc
Q psy12578 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYTPK 149 (172)
Q Consensus 74 ~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 149 (172)
.|+|+.+........+++|..|.++|||+++| |++||+|++|||.++.+++..++..+++.. +..+.|+|.|.+.
T Consensus 85 ~giG~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 160 (388)
T 1fc6_A 85 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA 160 (388)
T ss_dssp BBCSEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred EEEEEEEEEeecCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence 58999987521113569999999999999999 999999999999999999888999988865 4569999998865
No 175
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.81 E-value=1.2e-08 Score=75.97 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=51.7
Q ss_pred CCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCC-CEEEEECCeeCCCCCHHHHHHHHH-hCCCeEEEEEEECC
Q psy12578 75 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRG-DQLLSVNGVSVEGEDHGKAVELLK-QAQRSVKLVVRYTP 148 (172)
Q Consensus 75 g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~G-D~I~~Vng~~v~~~~~~~~~~~l~-~~~~~v~l~v~r~~ 148 (172)
|+|++...+.....|++|..|.++|||+++| |+.| |+|++|||..+.++..... .++. ..+..+.|+|.|..
T Consensus 3 g~~~~~~~~~~~~~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~-~~~~~~~g~~v~l~v~R~~ 76 (209)
T 3rle_A 3 GSSQSVEIPGGGTEGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLK-DLLKANVEKPVKMLIYSSK 76 (209)
T ss_dssp -----CCCTTSSSEEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHH-HHHHHTTTSCEEEEEEETT
T ss_pred chhhhhhccCCCCCEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHH-HHHhcCCCCEEEEEEEecC
Confidence 3444444444445679999999999999999 9999 9999999999987754332 3333 34667999998864
No 176
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.78 E-value=1.7e-08 Score=64.72 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=47.8
Q ss_pred CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12578 89 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 149 (172)
Q Consensus 89 ~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 149 (172)
++.|..+.++++|+++| |++||.|++|||+.+.+ +.++..++.. .+..+.|+|.|++.
T Consensus 20 G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g~ 79 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDGQ 79 (87)
T ss_dssp EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred EEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 46777778888889999 99999999999999965 5777777764 35679999999874
No 177
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.76 E-value=1.4e-07 Score=67.41 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=63.2
Q ss_pred CCEEEEEecC-CCCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12578 63 HPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 141 (172)
Q Consensus 63 ~~~~v~l~~~-~~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~ 141 (172)
..+++.+.+. ...+||.+.. + +|..+.++++|+.+| |+.||.|++|||.++.++.+..+...++..+..+.
T Consensus 88 ~~~~v~l~~~~~~~lG~~~~~------g-~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~ 159 (166)
T 1w9e_A 88 FERTITMHKDSTGHVGFIFKN------G-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVT 159 (166)
T ss_dssp TCEEEEEECCTTSCCSEEEET------T-EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred CcEEEEEecCCCCcEeEEEeC------C-EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEE
Confidence 4466777643 3678998872 3 789999999999999 99999999999999999999999888888888887
Q ss_pred EEEE
Q psy12578 142 LVVR 145 (172)
Q Consensus 142 l~v~ 145 (172)
+.+.
T Consensus 160 l~v~ 163 (166)
T 1w9e_A 160 ITIM 163 (166)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 178
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.75 E-value=4.4e-08 Score=63.86 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=48.0
Q ss_pred eEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-C-CeEEEEEEECC
Q psy12578 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-Q-RSVKLVVRYTP 148 (172)
Q Consensus 90 ~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~-~~v~l~v~r~~ 148 (172)
.+|..|.++|||+.+| |+.||+|++|||+.+.+ +.++...+... + ..+.++|.|++
T Consensus 4 p~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~d~~~~l~~~~~~~~v~l~v~R~g 61 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQ-IAPGTELKAVDGIETPD--WDAVRLQLVDKIGDESTTITVAPFG 61 (95)
T ss_dssp CBEEEECTTSHHHHTT-CCTTCEEEEETTEECSS--HHHHHHHHHHTTTCSEEEEEEECTT
T ss_pred CEEEeeCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHhcCCCcEEEEEEECC
Confidence 4688999999999999 99999999999999964 57888877654 3 56999999986
No 179
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.74 E-value=4.9e-08 Score=65.36 Aligned_cols=60 Identities=25% Similarity=0.418 Sum_probs=51.2
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 150 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 150 (172)
..+++|..|.++|||+.+| |+.||.|++|||..+.+ ..++...++ .+..+.|+|.|++..
T Consensus 34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~-~g~~v~l~v~R~g~~ 93 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD--SSELQEAVL-TESPLLLEVRRGNDD 93 (112)
T ss_dssp CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHH-HCSSEEEEEEETTEE
T ss_pred CCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHh-CCCeEEEEEEECCEE
Confidence 3579999999999999999 99999999999999964 577777774 466799999998743
No 180
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.72 E-value=3.7e-08 Score=63.42 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=49.5
Q ss_pred eEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEECCch
Q psy12578 90 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYTPKV 150 (172)
Q Consensus 90 ~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~~ 150 (172)
+.|..|.++|||+.+| |+.||.|++|||..+.+ +.++...+... +..+.++|.|++..
T Consensus 6 ~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g~~ 64 (91)
T 2zpm_A 6 PVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGSP 64 (91)
T ss_dssp CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETTEE
T ss_pred eEEEEECCCChHHhcC-CCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEEEEECCeE
Confidence 5688899999999999 99999999999999964 57888888765 55699999998754
No 181
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.70 E-value=1.9e-09 Score=87.38 Aligned_cols=66 Identities=29% Similarity=0.507 Sum_probs=0.0
Q ss_pred CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEEC
Q psy12578 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 147 (172)
Q Consensus 74 ~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 147 (172)
.+|||.+.+ .+|..|.+||+|+++| |++||+|++|||+++.+.++.+++.+++..++.+.|+|.+.
T Consensus 308 ~~lG~~i~~-------g~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~ 373 (388)
T 3suz_A 308 YQLGFSVQN-------GIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPA 373 (388)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CccceEEec-------CEEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEec
Confidence 467777754 3788999999999999 99999999999999999999999999999988898888543
No 182
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.66 E-value=1.2e-07 Score=75.66 Aligned_cols=61 Identities=23% Similarity=0.386 Sum_probs=53.3
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
..|++|..|.++|||+++| |++||+|++|||+.+. +..++..++.. .+..+.|+|.|+++.
T Consensus 262 ~~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~~ 324 (345)
T 3stj_A 262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGKP 324 (345)
T ss_dssp CSSEEEEEECTTSHHHHHT-CCTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred CceEEEEEeccCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 3578999999999999999 9999999999999996 45888888876 467799999998754
No 183
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.64 E-value=1.5e-07 Score=74.07 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=52.9
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
..+++|..|.++|||+++| |++||+|++|||+.+.+ ..++..+++. .+..+.|+|.|+++.
T Consensus 243 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~ 305 (318)
T 1te0_A 243 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDKQ 305 (318)
T ss_dssp CCCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEEEESSSCE
T ss_pred CCcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 3579999999999999999 99999999999999965 5788888875 466799999998754
No 184
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.64 E-value=2.8e-08 Score=80.82 Aligned_cols=73 Identities=23% Similarity=0.408 Sum_probs=56.8
Q ss_pred CCCCCeEEeccCCCCC--CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12578 73 DEGLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 149 (172)
Q Consensus 73 ~~g~G~~l~~~~~~~~--~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 149 (172)
..|+||.+........ .++|..|.++|||+++| |++||+|++|||..+.++. +..+++..+.+++|++.|.+.
T Consensus 73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~ 147 (403)
T 3k50_A 73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV 147 (403)
T ss_dssp BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence 3677777765332122 37899999999999999 9999999999999998875 556666655569999988764
No 185
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.62 E-value=1.1e-07 Score=62.96 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=46.5
Q ss_pred CeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 89 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 89 ~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
++.|....++++|+++| |++||.|++|||+.+.++ .++..++.. .+..+.|+|.|++..
T Consensus 38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~~ 98 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQQ 98 (105)
T ss_dssp EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTST--THHHHHHHHHTTCSEEEEEEEETTEE
T ss_pred EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 35666777778889999 999999999999999776 555566654 456799999998743
No 186
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.62 E-value=2.3e-07 Score=73.17 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=57.4
Q ss_pred CCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEE-CCch
Q psy12578 75 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRY-TPKV 150 (172)
Q Consensus 75 g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r-~~~~ 150 (172)
.+|+.+... +...+++|..|.+++||+++| |+.||+|++|||+.+.+ ..++..++.. .+..+.|+|.| +++.
T Consensus 230 ~lGi~~~~~-~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~~g~~ 304 (324)
T 1y8t_A 230 SLGVQVTND-KDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVALTFQDPSGGS 304 (324)
T ss_dssp ECCEEEESC-SSSSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEECSSCCE
T ss_pred ccceEeeec-cCCCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCCCE
Confidence 467766542 224579999999999999999 99999999999999965 4777777765 36779999999 7643
No 187
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.55 E-value=1.9e-07 Score=79.48 Aligned_cols=70 Identities=11% Similarity=0.221 Sum_probs=56.7
Q ss_pred CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 74 ~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
.++|+.+... ..++.|..|.++|||+++| |++||+|++|||..+.. .++..+++. .+..|.|+|.|+++.
T Consensus 485 ~~lG~~~~~~---~~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~---~~l~~~l~~~~~g~~v~l~v~R~g~~ 556 (597)
T 4fgm_A 485 VNFGAKYKAS---PQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATE---QSVKRILERYIPGDTVTIHAFRRDEL 556 (597)
T ss_dssp CCCSEEEEEE---TTEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCT---TTHHHHHTTCCTTCEEEEEEEETTEE
T ss_pred cccceEEecc---CCeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCH---HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 4789988653 3469999999999999999 99999999999999953 445555654 467799999998754
No 188
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.53 E-value=4.4e-07 Score=74.53 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=54.2
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 150 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 150 (172)
.+++|..|.++|||+++| |++||+|++|||+++. +++++..+++..++.+.|+|.|++..
T Consensus 363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~~ 422 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNES 422 (436)
T ss_pred CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCeEEEEEEECCEE
Confidence 479999999999999999 9999999999999996 46899999998777899999998754
No 189
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.48 E-value=4.8e-07 Score=71.50 Aligned_cols=59 Identities=24% Similarity=0.421 Sum_probs=52.0
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 150 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 150 (172)
.+++|..|.++|||+++| |+.||+|++|||+.+.+ ..++..+++. +..+.|+|.|+++.
T Consensus 256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~v~R~g~~ 314 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRET 314 (325)
T ss_dssp SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEEEEETTEE
T ss_pred CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEEEEECCEE
Confidence 579999999999999999 99999999999999964 5888888876 56799999998754
No 190
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.45 E-value=4.6e-07 Score=74.71 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=51.8
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
.+++|..|.++|||+++| |+.||+|++|||+.+.+ ..++...+.. .+..+.|+|.|+++.
T Consensus 282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~--~~~l~~~l~~~~~g~~v~l~V~R~g~~ 343 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQ--ATQVKTTISLLRVGSTVKIIVERDNKP 343 (451)
T ss_dssp CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 679999999999999999 99999999999999965 4777777764 467799999998753
No 191
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.44 E-value=4.1e-07 Score=74.72 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=51.3
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
..|++|..|.++|||+++| |+.||+|++|||+.+.++ .++...+.. .+..+.|+|.|+++.
T Consensus 262 ~~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~ 324 (436)
T 4a8c_A 262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKP 324 (436)
T ss_pred CcceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 3579999999999999999 999999999999999754 666666654 367799999998753
No 192
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.44 E-value=6e-07 Score=66.60 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCCCeEEeccCC---CCCCeEEEeecCCChhhhcCCCCC-CCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEECC
Q psy12578 74 EGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKR-GDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYTP 148 (172)
Q Consensus 74 ~g~G~~l~~~~~---~~~~~~V~~v~~g~~A~~~G~L~~-GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 148 (172)
..+|+++..-.. ...+++|..|.++|||+++| |++ ||+|++|||. +.+ ++++..+++.. +..+.|+|.|..
T Consensus 95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~--~~~l~~~l~~~~g~~v~l~v~r~~ 170 (209)
T 3rle_A 95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNE--SEDLFSLIETHEAKPLKLYVYNTD 170 (209)
T ss_dssp SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCS--SSCHHHHHHHTTTSCEEEEEEETT
T ss_pred CccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCC--HHHHHHHHHhCCCCeEEEEEEECC
Confidence 468988873111 12579999999999999999 999 9999999997 644 46677777765 567999998864
No 193
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.43 E-value=5.3e-07 Score=71.88 Aligned_cols=60 Identities=28% Similarity=0.380 Sum_probs=52.3
Q ss_pred CCeEEEeecCCChhhhcCCCCC-----------CCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 88 SPIYISRIIPGGVADRHGGLKR-----------GDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~-----------GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
.|++|..|.++|||+++| |+. ||+|++|||+.+.++ .++...+.. .+++++|+|.|+++.
T Consensus 251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~ 323 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHK 323 (348)
T ss_dssp SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSE
T ss_pred ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEE
Confidence 479999999999999999 999 999999999999765 788888854 367799999998754
No 194
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.43 E-value=9.9e-07 Score=60.32 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=48.9
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 149 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 149 (172)
..++.|..|.+++||+++ |+.||+|++|||..+.+ ..++...+.. .+..+.++| |++.
T Consensus 24 ~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~--~~dl~~~l~~~~~g~~v~l~V-R~g~ 83 (125)
T 2hga_A 24 PDGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITT-DQGT 83 (125)
T ss_dssp CCCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred CCceEEEEECCCChHHHh--cCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence 346999999999999987 99999999999999965 5788887774 366799999 8764
No 195
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=98.41 E-value=1.8e-07 Score=52.40 Aligned_cols=31 Identities=65% Similarity=1.022 Sum_probs=29.8
Q ss_pred CCCChhcHHHHHHhhhhhHHHHHHHHHHHHH
Q psy12578 1 GEVPVTKLSALQKVLQSDFFNCVRDVYEHVY 31 (172)
Q Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 31 (172)
|++|+.|+.+|++||+|.||.++.|+|+++|
T Consensus 23 gevp~~KL~aLq~VLqSdF~~aVREVYEhvy 53 (53)
T 1zl8_A 23 GEVNNAKLASLQQVLQSEFFGAVREVYETVY 53 (53)
T ss_dssp SSSTHHHHHHHHHHHSCSHHHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999999999876
No 196
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.38 E-value=6.4e-07 Score=73.88 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=53.3
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 150 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 150 (172)
.+++|..|.++|+|+++| |++||+|++|||+++.+ .+++..+++..+..+.|+|.|++..
T Consensus 386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~~ 445 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQVLRGPGS 445 (451)
T ss_dssp EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEEEEETTEE
T ss_pred CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEEEEECCEE
Confidence 368999999999999999 99999999999999964 5889999988777899999998743
No 197
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.27 E-value=1e-07 Score=75.55 Aligned_cols=60 Identities=32% Similarity=0.530 Sum_probs=0.0
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCchh
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVL 151 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~ 151 (172)
.+++|..|.++|||+++| |+.||+|++|||..+.+ +.++..+++. +..+.|+|.|+++..
T Consensus 254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~~~ 313 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVS--ANDVSDVIKR-ESTLNMVVRRGNEDI 313 (332)
T ss_dssp ----------------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCEEE
Confidence 478999999999999999 99999999999999954 4677777765 667999999987543
No 198
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.10 E-value=3.9e-07 Score=75.06 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 150 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 150 (172)
.+++|..|.++++|+++| |+.||+|++|||+.+.+ +.++..+++..++.+.|+|.|++..
T Consensus 383 ~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~~--~~~l~~~l~~~~~~v~l~v~R~g~~ 442 (448)
T 1ky9_A 383 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGDST 442 (448)
T ss_dssp ---------------------------------------------------------------
T ss_pred CeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCeEEEEEEECCEE
Confidence 468999999999999999 99999999999999964 5788888887666889999888643
No 199
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.05 E-value=2.5e-06 Score=70.25 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=51.4
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 150 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 150 (172)
.+++|..|.++|||+++| |+.||+|++|||..+.++ .++..++.. .+..+.|+|.|++..
T Consensus 286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~ 347 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKQ 347 (448)
T ss_dssp CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSCE
T ss_pred CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 479999999999999999 999999999999999776 677777764 467799999988643
No 200
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.94 E-value=2.3e-05 Score=70.17 Aligned_cols=69 Identities=10% Similarity=0.136 Sum_probs=56.6
Q ss_pred CCCCeEEeccCCCCCCeEEEeecCC--------ChhhhcC-CCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEE
Q psy12578 74 EGLGFNVMGGKEQNSPIYISRIIPG--------GVADRHG-GLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLV 143 (172)
Q Consensus 74 ~g~G~~l~~~~~~~~~~~V~~v~~g--------~~A~~~G-~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~ 143 (172)
.|+|+.+... ..+++|..|.+| |||+++| .|+ ||+|++|||+++.++. ++..+++.. +..|.|+
T Consensus 737 ~g~G~~~~~~---~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l~ 810 (1045)
T 1k32_A 737 GRIACDFKLD---GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIR 810 (1045)
T ss_dssp CBCSEEEEEE---TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEE
T ss_pred ceecEEEEEe---CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEEE
Confidence 6899988652 346899999988 9999997 389 9999999999998874 677788775 4569999
Q ss_pred EEECC
Q psy12578 144 VRYTP 148 (172)
Q Consensus 144 v~r~~ 148 (172)
|.|.+
T Consensus 811 v~r~~ 815 (1045)
T 1k32_A 811 LSGKG 815 (1045)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 98875
No 201
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.67 E-value=7.4e-05 Score=62.77 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=48.4
Q ss_pred CCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCH--------HHHHHHHH--hCCCeEEEEEEECCchhH
Q psy12578 87 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH--------GKAVELLK--QAQRSVKLVVRYTPKVLE 152 (172)
Q Consensus 87 ~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~--------~~~~~~l~--~~~~~v~l~v~r~~~~~~ 152 (172)
..|++|..|.++|||++ + |+.||+|++|||+.|..... .....++. ..|+++.|+|.|+++..+
T Consensus 276 ~~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~ 349 (539)
T 4fln_A 276 NEGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKK 349 (539)
T ss_dssp SBCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEE
T ss_pred cCceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEE
Confidence 35899999999999986 5 99999999999999964321 11233443 357889999999986543
No 202
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.05 E-value=0.0016 Score=54.73 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=47.9
Q ss_pred CCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EEEEEE
Q psy12578 88 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VKLVVR 145 (172)
Q Consensus 88 ~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~-v~l~v~ 145 (172)
.+++|..|.++++|...| ++.||+|++|||+.|.+ ..++.++++.+.+. +.+.+.
T Consensus 415 ~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s--~~~l~~~l~~~k~~~l~~~~~ 470 (539)
T 4fln_A 415 QIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRN--IHHLAHLIDMCKDKYLVFEFE 470 (539)
T ss_dssp CCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCS--HHHHHHHHHTCCSSEEEEEET
T ss_pred eEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCC--HHHHHHHHHHcCCCeEEEEEC
Confidence 469999999999999998 99999999999999965 58999999988765 666653
No 203
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=91.01 E-value=0.27 Score=30.26 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.1
Q ss_pred ChhcHHHHHHhhhhhHHHHHHHHHHHHH
Q psy12578 4 PVTKLSALQKVLQSDFFNCVRDVYEHVY 31 (172)
Q Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 31 (172)
+.++++.++.+|+||+|..++.++..+.
T Consensus 24 ~~ekLs~lk~~LqSPLF~qILtlQqSik 51 (83)
T 1vf6_A 24 QNEKLSMFYETLKSPLFNQILTLQQSIK 51 (83)
T ss_dssp THHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 4679999999999999988887765444
No 204
>1rso_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity; NMR {Rattus norvegicus} SCOP: a.194.1.1
Probab=84.02 E-value=1.2 Score=25.37 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=24.1
Q ss_pred hhcHHHHHHhhhhhHHHHHHHHHHHHH
Q psy12578 5 VTKLSALQKVLQSDFFNCVRDVYEHVY 31 (172)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~~~~~ 31 (172)
.+++.+|+.+|.+++++++.++|+.+.
T Consensus 27 ~~d~~fL~~ll~~~~L~~Llkvhdki~ 53 (56)
T 1rso_B 27 EKDLDFLHSVFQDQHLHTLLDLYDKIN 53 (56)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 467899999999999999999998774
No 205
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=78.77 E-value=3.1 Score=22.91 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=24.1
Q ss_pred hcHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q psy12578 6 TKLSALQKVLQSDFFNCVRDVYEHVYETV 34 (172)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 34 (172)
.+...|.++|+.|+|+++++.++.+....
T Consensus 19 ~~~~EL~~lL~~PHfqaLl~ahD~Va~~~ 47 (50)
T 1y74_B 19 NDAKELKRILTQPHFMALLQTHDVVAHEV 47 (50)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999998776543
No 206
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=56.62 E-value=18 Score=30.52 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=26.8
Q ss_pred CCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCC
Q psy12578 75 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 122 (172)
Q Consensus 75 g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~ 122 (172)
.+||.+.-.. ++.++|..+.... ++ +..||+|++|||.++.
T Consensus 85 ~~Pf~vki~i--DG~i~V~dv~~~~----s~-I~vGdEIlsING~pv~ 125 (583)
T 3dor_A 85 YLPYTVQKSS--DGRFYFVDIMTFS----SE-IRVGDELLEVDGAPVQ 125 (583)
T ss_dssp ECSEEEEECT--TSCEEEEEECSSC----CS-SCTTCEEEEETTEEHH
T ss_pred cCCeEEEEEE--CCcEEEEeccccc----cC-CCCCCEEEEECCccHH
Confidence 3566665222 2337776653322 24 9999999999999883
No 207
>3uit_A INAD-like protein, maguk P55 subfamily member 5, LIN-7 homolog B; L27 domain, cell polarization, cell adhesion; 2.05A {Mus musculus} PDB: 1y76_A 1y76_B 1y74_A
Probab=52.07 E-value=10 Score=28.61 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.2
Q ss_pred ChhcHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy12578 4 PVTKLSALQKVLQSDFFNCVRDVYEHVYET 33 (172)
Q Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 33 (172)
+.+++..++.+|+|++|..++.++..+.+-
T Consensus 31 ~~~~l~~~~~~l~splf~~il~lq~s~~~l 60 (265)
T 3uit_A 31 QNEKLSAFYETLKSPLFNQILTLQQSIKQL 60 (265)
T ss_dssp SHHHHHHHHHHHHCHHHHHHHHHHHHCTTB
T ss_pred hHhHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 356999999999999999999888766543
No 208
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7 homolog C; tripartite complex, L27 tetramer, cell junction; 2.95A {Homo sapiens} PDB: 1rso_A
Probab=48.74 E-value=12 Score=28.23 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=22.4
Q ss_pred cHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q psy12578 7 KLSALQKVLQSDFFNCVRDVYEHVYETV 34 (172)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 34 (172)
.++++..+|+|++|++++++++-+..++
T Consensus 32 ~~~~~i~~f~s~lf~~lldi~e~ye~tl 59 (254)
T 3lra_A 32 SIERVINIFQSNLFQALIDIQEFYEVTL 59 (254)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999886444333
No 209
>3uit_A INAD-like protein, maguk P55 subfamily member 5, LIN-7 homolog B; L27 domain, cell polarization, cell adhesion; 2.05A {Mus musculus} PDB: 1y76_A 1y76_B 1y74_A
Probab=35.95 E-value=40 Score=25.45 Aligned_cols=36 Identities=14% Similarity=0.025 Sum_probs=28.8
Q ss_pred hcHHHHHHhhhhhHHHHHHHHHHHHHhhhccCCCcc
Q psy12578 6 TKLSALQKVLQSDFFNCVRDVYEHVYETVDIQGSPD 41 (172)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (172)
.+...|.++|.+++|++++..++.+......+.-+.
T Consensus 161 ~ea~EL~~LLs~PHfQALL~AHD~VAqK~yeP~lP~ 196 (265)
T 3uit_A 161 KEGQELTALLNTPHIQALLLAHDKVAEQEMGGGLEV 196 (265)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHSSSCCCGGG
T ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 456789999999999999999998887765444443
No 210
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=27.37 E-value=64 Score=18.87 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=21.9
Q ss_pred hhcHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q psy12578 5 VTKLSALQKVLQSDFFNCVRDVYEHVYETV 34 (172)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 34 (172)
-++.+.|..+++...|++...++..+....
T Consensus 36 QeDi~lllqL~~~~DFQ~A~kIhNaVs~~m 65 (72)
T 1vf6_C 36 QEDISLLLQLVQNRDFQNAFKIHNAVTVHM 65 (72)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 457888899999999988888887665443
No 211
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7 homolog C; tripartite complex, L27 tetramer, cell junction; 2.95A {Homo sapiens} PDB: 1rso_A
Probab=26.18 E-value=66 Score=24.11 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=23.4
Q ss_pred hhcHHHHHHhhhhhHHHHHHHHHHHHHhhhc
Q psy12578 5 VTKLSALQKVLQSDFFNCVRDVYEHVYETVD 35 (172)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 35 (172)
..++.+|+++|.+++++++.++|+.+.....
T Consensus 96 d~Dl~FLk~lL~sp~L~sLlkihd~L~~~~~ 126 (254)
T 3lra_A 96 QEDLTFLWDMFGEKSLHSLVKIHEKLHYYEK 126 (254)
T ss_dssp TTHHHHHHHHC---CHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHcCHHHHHHHHHHHHHHhccC
Confidence 3578999999999999999999988776443
No 212
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=24.56 E-value=49 Score=24.19 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=39.3
Q ss_pred CCCCeEEeccCCCCCCeEEEeecCCChhhhcCCCCCCCEEEEECCeeCCCCCHH---HHHHHHHhCC-CeEEEEEEECC
Q psy12578 74 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG---KAVELLKQAQ-RSVKLVVRYTP 148 (172)
Q Consensus 74 ~g~G~~l~~~~~~~~~~~V~~v~~g~~A~~~G~L~~GD~I~~Vng~~v~~~~~~---~~~~~l~~~~-~~v~l~v~r~~ 148 (172)
.++.+.+... +.-+.|.- +.++| +..|..++++||.++.+...+ ++...+-+.. .++-+..-...
T Consensus 34 ~p~~~~~~~~---~~~~~v~~------~~~d~-~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~f~~~ 102 (219)
T 2j3t_D 34 YPLDLLLKLH---DERVLVAF------GQRDG-IRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPR 102 (219)
T ss_dssp SSCSSEEEEC---SSSEEEEE------CCCTT-CCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEEECCC
T ss_pred CCcceeeeec---cceeEEee------cccCC-ccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEecCCC
Confidence 5566666542 12244432 34567 999999999999999875222 4555554443 34666654443
No 213
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=24.35 E-value=1e+02 Score=22.51 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 105 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 105 G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
|.+..|+.|+-|++.-.++.+...++++++..|..
T Consensus 132 g~~~~Gk~VLIVDDvitTG~Tl~~a~~~L~~~Ga~ 166 (234)
T 3m3h_A 132 GKAEKGQKVVVVEDLISTGGSAITCVEALREAGCE 166 (234)
T ss_dssp SCCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCE
T ss_pred cccCCCCEEEEEecccchhHHHHHHHHHHHHCCCE
Confidence 44788999999999999999999999999999866
No 214
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=23.99 E-value=50 Score=22.71 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=24.1
Q ss_pred cHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy12578 7 KLSALQKVLQSDFFNCVRDVYEHVYET 33 (172)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~~~~~~ 33 (172)
+.+.|+.++.|+.|+..+..|.+.++.
T Consensus 71 ~~e~L~~~l~SPQF~Qal~~fs~AL~s 97 (155)
T 2kqz_A 71 TADEIQNTLTSPQFQQALGMFSAALAS 97 (155)
T ss_dssp SHHHHHSSCCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 789999999999999999999888765
No 215
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=22.08 E-value=1.2e+02 Score=22.29 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=31.5
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12578 105 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 139 (172)
Q Consensus 105 G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~ 139 (172)
|.+..|+.|+-|++.-.++.+...++++++..|..
T Consensus 144 g~~~~Gk~VLIVDDvitTG~Tl~~a~~~L~~~Ga~ 178 (243)
T 3dez_A 144 GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGAD 178 (243)
T ss_dssp SCCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCE
T ss_pred eccCCCCEEEEEEeeccccHHHHHHHHHHHHCCCE
Confidence 44788999999999999999999999999999866
No 216
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=20.10 E-value=40 Score=20.03 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=23.9
Q ss_pred EEEEecCCCCCCeEEeccCCCCCCeEEE--eecCCChhhhcCCCCCCCEEEE
Q psy12578 66 VVELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLLS 115 (172)
Q Consensus 66 ~v~l~~~~~g~G~~l~~~~~~~~~~~V~--~v~~g~~A~~~G~L~~GD~I~~ 115 (172)
+|.......||||..... ....||. .+...+ .|..||.|.-
T Consensus 6 ~Vkwfn~~KGfGFI~~~d---g~~dFvH~s~i~~~g------~l~~G~~V~F 48 (74)
T 2k5n_A 6 TITTWFKDKGFGFIKDEN---GDNRYFHVIKVANPD------LIKKDAAVTF 48 (74)
T ss_dssp EEEEEETTTTEEEEEESS---SCEEEEEGGGBSSGG------GCCTTCEEEE
T ss_pred EEEEEECCCCeEEEecCC---CCceEEEHhHcccCC------CCCCCCEEEE
Confidence 355555779999987642 1123543 332221 4889998764
Done!