BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12579
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 149 bits (377), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/83 (90%), Positives = 77/83 (92%)
Query: 32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
VVELPKTDEGLGFN+MGGKEQNSPIYISR+IPGGVADRHGGLKRGDQLLSVNGVSVEGE
Sbjct: 8 VVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
Query: 92 HGKAVELLKQAQRSVKLVVRYTP 114
H KAVELLK AQ SVKLVVR P
Sbjct: 68 HEKAVELLKAAQGSVKLVVRSGP 90
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR V L K GLGFN++GG E I++S I+ GG AD G L+RGDQ+LSVNG+ + G
Sbjct: 4 PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 62
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRF 124
H +A LK A ++V ++ +Y P+ E +
Sbjct: 63 ASHEQAAAALKGAGQTVTIIAQYQPEDYARFEAKI 97
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR + L K GLGFN++GG E I++S I+ GG AD G L+RGD++LSVNGV++
Sbjct: 13 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 71
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
H +A LK+A +SV +V +Y P+ E
Sbjct: 72 ATHEQAAAALKRAGQSVTIVAQYRPEEYSRFE 103
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR + L K GLGFN++GG E I++S I+ GG AD G L+RGD++LSVNGV++
Sbjct: 16 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
H +A LK+A +SV +V +Y P+ E
Sbjct: 75 ATHEQAAAALKRAGQSVTIVAQYRPEEYSRFE 106
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR + + + GLGFN++GG E I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 308 PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 366
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQR 128
H +A LK A ++V ++ +Y P+ E + R
Sbjct: 367 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLR 405
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQL 79
EG + L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +
Sbjct: 55 EGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 114
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKL-VVRYTPKVLEEMEMRFDK 126
L VN V V H AVE LK+A V+L V+R P + ME++ K
Sbjct: 115 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 162
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD++L+VN V +
Sbjct: 158 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 217
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H AV LK V L V
Sbjct: 218 EDVMHEDAVAALKNTYDVVYLKV 240
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR + + + GLGFN++GG E I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 15 PRRIVIHRGSTGLGFNIIGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
H +A LK A ++V ++ +Y P+ E
Sbjct: 74 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 105
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR + + + GLGFN++GG E I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 12 PRRIVIHRGSTGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 70
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
H +A LK A ++V ++ +Y P+ E +
Sbjct: 71 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR + + + GLGFN++GG E I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 15 PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
H +A LK A ++V ++ +Y P+ E
Sbjct: 74 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 105
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR + + + GLGFN++GG E I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 7 PRRIVIHRGSTGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 65
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
H +A LK A ++V ++ +Y P+ E
Sbjct: 66 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 97
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 33 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
+ L + + G GF ++GG E PIYI I+P G AD G L+ GD+L+SV+G V G+ H
Sbjct: 6 IFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSH 65
Query: 93 GKAVELLKQA--QRSVKLVVRYT 113
V+L++QA Q V L VR T
Sbjct: 66 QLVVQLMQQAAKQGHVNLTVRQT 88
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
+V+ L + EGLG ++ GGKE PI IS I PG ADR GGL GD +L+VNGV++
Sbjct: 30 KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 89
Query: 91 DHGKAVELLKQAQRSVKLVVRYT 113
H +AV +L Q + ++ V Y
Sbjct: 90 KHKEAVTILSQQRGEIEFEVVYV 112
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
+V+ L + EGLG ++ GGKE PI IS I PG ADR GGL GD +L+VNGV++
Sbjct: 12 KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 71
Query: 91 DHGKAVELLKQAQRSVKLVVRYT 113
H +AV +L Q + ++ V Y
Sbjct: 72 KHKEAVTILSQQRGEIEFEVVYV 94
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
+V+ L + EGLG ++ GGKE PI IS I PG ADR GGL GD +L+VNGV++
Sbjct: 5 KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 64
Query: 91 DHGKAVELLKQAQRSVKLVVRYT 113
H +AV +L Q + ++ V Y
Sbjct: 65 KHKEAVTILSQQRGEIEFEVVYV 87
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 30 PRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
PR+V L K LGFN+ GGK I+IS++IP A R GL+ GDQ+L+VN V +
Sbjct: 16 PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHR-AGLQEGDQVLAVNDVDFQ 74
Query: 89 GEDHGKAVELLKQAQRSVKLVVRY 112
+H KAVE+LK A R + + VR+
Sbjct: 75 DIEHSKAVEILKTA-REISMRVRF 97
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
GLG ++ GG+E PI IS+I PG AD+ L+ GD +LSVNG + H +AV+ LK
Sbjct: 16 GLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALK 75
Query: 101 QAQRSVKLVVRYTPKV 116
+A + V L V++ +V
Sbjct: 76 RAGKEVLLEVKFIREV 91
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
VEL + +G GF++ GG+E N +Y+ R+ G A+R G ++ GD++L +NG + +
Sbjct: 27 TVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMK 86
Query: 92 HGKAVELLKQAQRSVKLVVR 111
H +A+EL+K R V+L ++
Sbjct: 87 HSRAIELIKNGGRRVRLFLK 106
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 33 VELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
VEL KTD LG +V GG + IY+ IIP G A+ G + +GD++L+VNGVS+EG
Sbjct: 16 VELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 75
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
H +AVE L+ + V L++
Sbjct: 76 ATHKQAVETLRNTGQVVHLLL 96
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 33 VELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
VEL KTD LG +V GG + IY+ IIP G A+ G + +GD++L+VNGVS+EG
Sbjct: 8 VELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 67
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
H +AVE L+ + V L++
Sbjct: 68 ATHKQAVETLRNTGQVVHLLL 88
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 13/93 (13%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQ-------NSPIY-----ISRIIPGGVADRHGGLKRGD 77
PRVV + K++ G GFNV G + N +Y +S ++PGG ADR G+++GD
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADR-AGVRKGD 65
Query: 78 QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
++L VNGV+VEG H + V+L++ ++ + L V
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 13/93 (13%)
Query: 30 PRVVELPKTDEGLGFNVMG-----------GKEQNSPI-YISRIIPGGVADRHGGLKRGD 77
PRVV + K++ G GFNV G E +P+ ++S ++PGG ADR G+++GD
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADR-AGVRKGD 65
Query: 78 QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
++L VNGV+VEG H + V+L++ ++ + L V
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ + L + +GLGF+++GG + PIY+ + G A G LKRGDQ+++VNG S+
Sbjct: 27 KSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSL 86
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
EG H +AV +LK+ + +V L+V
Sbjct: 87 EGVTHEEAVAILKRTKGTVTLMV 109
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 13/93 (13%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQ-------NSPIY-----ISRIIPGGVADRHGGLKRGD 77
PRVV + K++ G GFNV G + N +Y +S ++PGG ADR G+++GD
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADR-AGVRKGD 65
Query: 78 QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
++L VNGV+VEG H + V+L++ ++ + L V
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Query: 31 RVVELPKTDEG--LGFNVMGG----KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
R VE+ EG GF + GG + ++ P+ I+ + PGG ADR G +K GD+LLSV+G
Sbjct: 106 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDG 165
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
+ + G H +A+ +LKQ + L++ Y V++
Sbjct: 166 IRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMD 199
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32 VVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
VVEL K + LG V GG +++ +S + GG+A R L GD + +VNG+++
Sbjct: 10 VVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKF 69
Query: 91 DHGKAVELLKQAQRSVKLVVRY 112
H + + LLK V L V Y
Sbjct: 70 RHDEIISLLKNVGERVVLEVEY 91
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 12/112 (10%)
Query: 27 HAHPR------VVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKR 75
H HPR + L + + GLGF++ GG + + I+I++IIPGG A + G L+
Sbjct: 4 HHHPRGSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRV 63
Query: 76 GDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL-VVRYTPKVLEEMEMRFDK 126
D +L VN V V H AVE LK+A V+L V+R P + ME++ K
Sbjct: 64 NDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 115
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD++L+VN V +
Sbjct: 111 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 170
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H AV LK V L V
Sbjct: 171 EDVMHEDAVAALKNTYDVVYLKV 193
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 33 VELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
VEL K D LG +V GG + IY+ +IP G A+ G + +GD++L+VNGVS+EG
Sbjct: 9 VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
H +AVE L+ + V L++
Sbjct: 69 ATHKQAVETLRNTGQVVHLLL 89
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 33 VELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
VEL K D LG +V GG + IY+ +IP G A+ G + +GD++L+VNGVS+EG
Sbjct: 9 VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
H +AVE L+ + V L++
Sbjct: 69 ATHKQAVETLRNTGQVVHLLL 89
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR V L + GLGFN++GG E I+IS I+ GG AD G L++GD+++SVN V +
Sbjct: 8 PRKVVLHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRA 66
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPK 115
H +A LK A ++V +V +Y P+
Sbjct: 67 ASHEQAAAALKNAGQAVTIVAQYRPE 92
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 31 RVVELPKTDEG--LGFNVMGG----KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
R VE+ EG GF + GG + ++ P+ I+ + PGG ADR G +K GD+LLSV+G
Sbjct: 3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG 62
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVVRY 112
+ + G H +A+ +LKQ + L++ Y
Sbjct: 63 IRLLGTTHAEAMSILKQCGQEAALLIEY 90
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 32 VVELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
V L +++ GLGF++ GGK ++ I++SRI GG A R G L+ GD++LS+NGV
Sbjct: 10 VACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGV 69
Query: 86 SVEGEDHGKAVELLKQAQRSVKLVV 110
V H AV LL A ++ L++
Sbjct: 70 DVTEARHDHAVSLLTAASPTIALLL 94
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + + GLGF++ GG + +S I+I++II GG A + G L+ D +L VN V V
Sbjct: 15 ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDV 74
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEM 120
H KAVE LK+A V+L V+ V E++
Sbjct: 75 RDVTHSKAVEALKEAGSIVRLYVKRRKPVSEKI 107
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
H VEL GLGF ++GGK S + + I+PGG+ADR G L+ GD +L + G +
Sbjct: 13 WGHVEEVELINDGSGLGFGIVGGK--TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTN 70
Query: 87 VEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
V+G + ++L+ SV+++V P
Sbjct: 71 VQGMTSEQVAQVLRNCGNSVRMLVARDPA 99
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + + GLGF++ GG + + I+I++IIPGG A G L+ D +L VN V V
Sbjct: 13 ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 72
Query: 88 EGEDHGKAVELLKQAQRSVKLVVR 111
H KAVE LK+A V+L VR
Sbjct: 73 SEVSHSKAVEALKEAGSIVRLYVR 96
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +L VN V V
Sbjct: 9 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 68
Query: 88 EGEDHGKAVELLKQAQRSVKL-VVRYTPKVLEEMEMRFDK 126
H AVE LK+A V+L V+R P + ME++ K
Sbjct: 69 REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 108
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD++L+VN V +
Sbjct: 104 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 163
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H AV LK V L V
Sbjct: 164 EDVMHEDAVAALKNTYDVVYLKV 186
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +L VN V V
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 88 EGEDHGKAVELLKQAQRSVKL-VVRYTPKVLEEMEMRFDK 126
H AVE LK+A V+L V+R P + ME++ K
Sbjct: 66 REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 105
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD++L+VN V +
Sbjct: 101 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 160
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H AV LK V L V
Sbjct: 161 EDVMHEDAVAALKNTYDVVYLKV 183
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
V++ K +G GF++ GG+E +Y+ R+ G A R+G ++ GDQ++ +NG S
Sbjct: 14 TVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT 73
Query: 92 HGKAVELLKQAQRSVKLVVR 111
H +A+EL+K R V+L+++
Sbjct: 74 HARAIELIKSGGRRVRLLLK 93
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 26 GHAHPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
G R V + K D G LG ++ GG+E PI IS+I G AD+ L GD +LSVNG
Sbjct: 1 GSLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVVRY 112
+ H +AV+ LK+ + V L V+Y
Sbjct: 61 EDLSSATHDEAVQALKKTGKEVVLEVKY 88
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 31 RVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
R V + K D G LG ++ GG+E PI IS+I G AD+ L GD +LSVNG +
Sbjct: 79 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 138
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKV 116
H +AV+ LK+ + V L V+Y +V
Sbjct: 139 ATHDEAVQALKKTGKEVVLEVKYMKEV 165
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 33 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
V L + + G GF ++GG E PI I +I G ADR G L GD+L+ V+G+ V G+ H
Sbjct: 13 VHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72
Query: 93 GKAVELLKQAQRS--VKLVVR 111
++L+ A R+ V L VR
Sbjct: 73 RYVIDLMHHAARNGQVNLTVR 93
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 31 RVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
R V + K D G LG ++ GG+E PI IS+I G AD+ L GD +LSVNG +
Sbjct: 2 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 61
Query: 90 EDHGKAVELLKQAQRSVKLVVRY 112
H +AV+ LK+ + V L V+Y
Sbjct: 62 ATHDEAVQALKKTGKEVVLEVKY 84
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 31 RVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
R V + K D G LG ++ GG+E PI IS+I G AD+ L GD +LSVNG +
Sbjct: 2 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 61
Query: 90 EDHGKAVELLKQAQRSVKLVVRY 112
H +AV+ LK+ + V L V+Y
Sbjct: 62 ATHDEAVQALKKTGKEVVLEVKY 84
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + + GLGF++ GG + +S I+I++II GG A + G L+ D +L VN V
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADV 64
Query: 88 EGEDHGKAVELLKQAQRSVKLVVR 111
H KAVE LK+A V+L V+
Sbjct: 65 RDVTHSKAVEALKEAGSIVRLYVK 88
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + GLGFN++GG +Q +S IY+SRI G A G L+ GD++LSVNG +
Sbjct: 21 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 80
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
+ H AV+L + A +V L V++ +V
Sbjct: 81 KNLLHQDAVDLFRNAGYAVSLRVQHRLQV 109
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + GLGFN++GG +Q +S IY+SRI G A G L+ GD++LSVNG +
Sbjct: 13 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 72
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRY 112
+ H AV+L + A +V L V++
Sbjct: 73 KNLLHQDAVDLFRNAGYAVSLRVQH 97
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + GLGFN++GG +Q +S IY+SRI G A G L+ GD++LSVNG +
Sbjct: 11 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 70
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRY 112
+ H AV+L + A +V L V++
Sbjct: 71 KNLLHQDAVDLFRNAGYAVSLRVQH 95
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +L VN V V
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
H AVE LK+A V+L V
Sbjct: 66 REVTHSAAVEALKEAGSIVRLYV 88
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 57/85 (67%), Gaps = 4/85 (4%)
Query: 41 GLGFNVMGGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
GLGF++ GG + +N I + R+ P G+A + G +++G+++LS+NG S++G H A+ +L
Sbjct: 28 GLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87
Query: 100 KQA---QRSVKLVVRYTPKVLEEME 121
+QA +++V + + TP+ + ++
Sbjct: 88 RQAREPRQAVIVTRKLTPEAMPDLN 112
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +L VN V V
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
H AVE LK+A V+L V
Sbjct: 65 REVTHSAAVEALKEAGSIVRLYV 87
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +L VN V V
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
H AVE LK+A V+L V
Sbjct: 65 REVTHSAAVEALKEAGSIVRLYV 87
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 33 VELPKTDEGLGFNVM-----GGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
VEL KTD LG +V GG + IY+ IIP G A+ G + +GD++L+VNG
Sbjct: 8 VELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNG 67
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVV 110
VS+EG H +AVE L+ + V L++
Sbjct: 68 VSLEGATHKQAVETLRNTGQVVHLLL 93
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 27 HAHPRVVELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLS 81
H H +V P+ +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+
Sbjct: 2 HHHHHLV--PRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 59
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDK 126
VN V++E H +AV LK V L V + ME++ K
Sbjct: 60 VNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGSGEKIMEIKLIK 104
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN VS+
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSL 66
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H +AV LK V L V
Sbjct: 67 EEVTHEEAVTALKNTSDFVYLKV 89
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 29 HPRVVELPKT-DEGLGFNVMGG---KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
H +VV + K E LG V GG +E + PIY+ + PGGV R G +K GD LL+V+G
Sbjct: 24 HEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDG 83
Query: 85 VSVEGEDHGKAVELLKQAQRSVKL 108
V + +AV LLK+ S+ L
Sbjct: 84 VELTEVSRSEAVALLKRTSSSIVL 107
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
PR V L + GLGFN++GG E I+IS I+ GG AD G L++GD+++SVN V +
Sbjct: 4 EPRKVVLHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLR 62
Query: 89 GEDHGKAVELLKQAQRSVKLVVR 111
H +A LK A ++V +V +
Sbjct: 63 AASHEQAAAALKNAGQAVTIVAQ 85
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 33 VELPKTDEGLGFNVM-----GGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
VEL K D LG +V GG + IY+ +IP G A+ G + +GD++L+VNG
Sbjct: 13 VELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 72
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVV 110
VS+EG H +AVE L+ + V L++
Sbjct: 73 VSLEGATHKQAVETLRNTGQVVHLLL 98
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V++
Sbjct: 12 IKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 71
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H +AV LK V L V
Sbjct: 72 EEVTHEEAVTALKNTSDFVYLKV 94
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 66
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H +AV LK V L V
Sbjct: 67 EEVTHEEAVTALKNTSDFVYLKV 89
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 15 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 74
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H +AV LK V L V
Sbjct: 75 EEVTHEEAVTALKNTSDFVYLKV 97
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 32 VVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
++E+ K GLG +++GGK+ + I I + G A R G L GDQ+L VNGV +
Sbjct: 20 IIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNS 79
Query: 91 DHGKAVELLKQAQRSVKLVV 110
H +A+ L+Q + V+LVV
Sbjct: 80 SHEEAITALRQTPQKVRLVV 99
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 13 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 72
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H +AV LK V L V
Sbjct: 73 EEVTHEEAVTALKNTSDFVYLKV 95
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 3 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 62
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H +AV LK V L V
Sbjct: 63 EEVTHEEAVTALKNTSDFVYLKV 85
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGL 66
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H +AV LK V L V
Sbjct: 67 EEVTHEEAVTALKNTSDFVYLKV 89
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 2 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 61
Query: 88 EGEDHGKAVELLKQAQRSVKL 108
E H +AV LK V L
Sbjct: 62 EEVTHEEAVTALKNTSDFVYL 82
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD+LL VN S+
Sbjct: 28 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H +AV +LK V L V
Sbjct: 88 EEVTHEEAVAILKNTSEVVYLKV 110
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 31 RVVEL--PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
R+V L K EGLGF++ GG E IY+S + PG +A++ GL+ GDQ+L VN S+
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLA 68
Query: 89 GEDHGKAVELLKQAQRSV 106
H +AV+ LK +++ V
Sbjct: 69 RVTHAEAVKALKGSKKLV 86
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 33 VELPKTDEGLGFNV------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
++L K EGLGF++ +GG ++PIY+ I+P G A + G LK GD+L+ VNGV
Sbjct: 15 IQLKKGTEGLGFSITSRDVTIGG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 71
Query: 87 VEGEDHGKAVELLKQAQR--SVKLVV 110
+ G+ + V LL+ + +V L+V
Sbjct: 72 LAGKSQEEVVSLLRSTKMEGTVSLLV 97
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 33 VELPKTDEGLGFNV------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
++L K EGLGF++ +GG ++PIY+ I+P G A + G LK GD+L+ VNGV
Sbjct: 9 IQLKKGTEGLGFSITSRDVTIGG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 65
Query: 87 VEGEDHGKAVELLKQAQR--SVKLVV 110
+ G+ + V LL+ + +V L+V
Sbjct: 66 LAGKSQEEVVSLLRSTKMEGTVSLLV 91
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
VEL + LG + G +E PI IS + GG+A+R G + GD++L++N S++G+
Sbjct: 8 TVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKP 67
Query: 92 HGKAVELLKQAQRSVKLVVR 111
+A+ LL+ A +V L ++
Sbjct: 68 LSEAIHLLQMAGETVTLKIK 87
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 33 VELPKTDEGLGFNV------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
++L K EGLGF++ +GG ++PIY+ I+P G A + G LK GD+L+ VNGV
Sbjct: 34 IQLKKGTEGLGFSITSRDVTIGG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 90
Query: 87 VEGEDHGKAVELLKQAQR--SVKLVV 110
+ G+ + V LL+ + +V L+V
Sbjct: 91 LVGKSQEEVVSLLRSTKMEGTVSLLV 116
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY++ I+ GG A + G L+ GD+LL+VN V +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGL 66
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H +AV LK V L V
Sbjct: 67 EEVTHEEAVTALKNTSDFVYLKV 89
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
+E P T GLGF+V+ + QN I++ + PG VADR LK DQ+L++N ++
Sbjct: 31 IERPSTG-GLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQ 89
Query: 90 E-DHGKAVELLKQAQRSVKLVVRYTP 114
H +A+ LL+Q S++L+V P
Sbjct: 90 NISHQQAIALLQQTTGSLRLIVAREP 115
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 29 HPRVVELPKTDEG-LGFNVMGGKEQNSP---IYISRIIPGGVADRHGGLKRGDQLLSVNG 84
H V EL K G LGF+V+G + +N I++ I G VA R G LK DQ+L++NG
Sbjct: 20 HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79
Query: 85 VSVEGE-DHGKAVELLKQAQRSVKLVV 110
+++ H +A+ +L++A+ +V+LV+
Sbjct: 80 QALDQTITHQQAISILQKAKDTVQLVI 106
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
V L K +GLGF++ GG Q+ P IYI++II GG A + G L+ GD+LL+VN ++
Sbjct: 7 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
+ H +AV LK V L V
Sbjct: 67 QDVRHEEAVASLKNTSDMVYLKV 89
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ L + ++G GF++ G K + +I R+ PG A+ L+ GD+L+ VNGV+VEG
Sbjct: 2 PRLCRLVRGEQGYGFHLHGEKGRRGQ-FIRRVEPGSPAE-AAALRAGDRLVEVNGVNVEG 59
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
E H + V+ +K + +L+V
Sbjct: 60 ETHHQVVQRIKAVEGQTRLLV 80
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 33 VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG Q+ P IY+++II GG A + G L+ GD++L+VN V +
Sbjct: 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 66
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E H AV LK V L V
Sbjct: 67 EDVMHEDAVAALKNTYDVVYLKV 89
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 31 RVVELPK--TDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
R VE+ K TD LG ++ GG + PI+I+ + P GVA + L+ GD+++++ G
Sbjct: 26 RTVEMKKGPTDS-LGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT 84
Query: 86 SVEGEDHGKAVELLKQAQRSVKLVV 110
S EG H +AV LLK A S+++ V
Sbjct: 85 STEGMTHTQAVNLLKNASGSIEMQV 109
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
++VEL K +GLGF+++ ++ P I I ++ GVA+R GGL GD+L+SVN
Sbjct: 17 KIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYC 76
Query: 87 VEGEDHGKAVELLKQ 101
++ +AVE+LK
Sbjct: 77 LDNTSLAEAVEILKA 91
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 27 HAHPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
H P ++ + K G+G +++ K + IY+ ++ GG AD G L GDQLLSV
Sbjct: 7 HKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66
Query: 83 NGVSVEGEDHGKAVELLKQAQRSVKLVV 110
+G S+ G +A EL+ + V L V
Sbjct: 67 DGRSLVGLSQERAAELMTRTSSVVTLEV 94
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
EGLG +V GG E ++IS +I GG AD GL+ GD+++ +NG S+ H + + L+
Sbjct: 96 EGLGLSVRGGLEFGCGLFISHLIKGGQADS-VGLQVGDEIVRINGYSISSCTHEEVINLI 154
Query: 100 KQAQRSVKLVVRY 112
+ +++V + VR+
Sbjct: 155 R-TEKTVSIKVRH 166
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 37 KTDEGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
K +EG GF ++ G P I RII G ADR LK GD++L+VNG S+
Sbjct: 19 KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIIN 78
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPK 115
H V+L+K A SV L R P+
Sbjct: 79 MPHADIVKLIKDAGLSVTL--RIIPQ 102
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 41 GLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 94
GLG ++ GGK + I+ISR+ G A R G++ GD+LL VNGV+++G +H +
Sbjct: 15 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDKLLEVNGVALQGAEHHE 73
Query: 95 AVELLKQAQRSVKLVV 110
AVE L+ A +V++ V
Sbjct: 74 AVEALRGAGTAVQMRV 89
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
PRVV + K G GF + G EQ I I I PG A+ GLK D +++VNG SVE
Sbjct: 5 QPRVVVIKKGSNGYGFYLRAGPEQKGQI-IKDIEPGSPAEA-AGLKNNDLVVAVNGKSVE 62
Query: 89 GEDHGKAVELLKQAQRSVKLVV 110
DH VE++++ L+V
Sbjct: 63 ALDHDGVVEMIRKGGDQTTLLV 84
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
LGF+V GG E I++S++ G A+R GL GD++ VNG+S+E G AV++L
Sbjct: 24 LGFSVRGGSEHGLGIFVSKVEEGSSAER-AGLCVGDKITEVNGLSLESTTMGSAVKVLTS 82
Query: 102 AQR 104
+ R
Sbjct: 83 SSR 85
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 33 VELPKTDEGLGFNVMGGKEQ----NSP-IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + + GLGF++ GG + + P I+I++IIPGG A G L D +L VN V V
Sbjct: 8 IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67
Query: 88 EGEDHGKAVELLKQA 102
H +AVE LK+A
Sbjct: 68 SEVVHSRAVEALKEA 82
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR V++ K E LG +++ G++ IY+S++ G +A + GL+ GDQLL NG+++
Sbjct: 20 PRHVKVQKGSEPLGISIVSGEK--GGIYVSKVTVGSIAHQ-AGLEYGDQLLEFNGINLRS 76
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKV 116
+A ++ Q ++ ++ +Y P V
Sbjct: 77 ATEQQARLIIGQQCDTITILAQYNPHV 103
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 41 GLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 94
GLG ++ GGK + I+ISR+ G A R G ++ GD+LL VNGV+++G +H +
Sbjct: 27 GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHE 85
Query: 95 AVELLKQAQRSVKLVV 110
AVE L+ A +V++ V
Sbjct: 86 AVEALRGAGTAVQMRV 101
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 35 LPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 94
L K++ G GF ++GG E + + + +IP G A + G ++ GD ++ +N V V G H
Sbjct: 25 LKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD 84
Query: 95 AVELLKQAQ--RSVKLVV 110
V+L + +SV LV+
Sbjct: 85 VVKLFQSVPIGQSVNLVL 102
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
+GLG +++G K ++ +++S I+ GG+AD G L +GDQ+L VNG V LL
Sbjct: 16 KGLGLSIVG-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALL 74
Query: 100 KQAQRSVKL 108
K + +V L
Sbjct: 75 KCSLGTVTL 83
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PRVV + K G GF + G EQ I I I PG A+ GLK D +++VNG SVE
Sbjct: 3 PRVVVIKKGSNGYGFYLRAGPEQKGQI-IKDIEPGSPAE-AAGLKNNDLVVAVNGKSVEA 60
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
DH VE++++ L+V
Sbjct: 61 LDHDGVVEMIRKGGDQTTLLV 81
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 32 VVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
+E+ K GLG +++GG + I I + G A + G L GDQ+L VNG+ +
Sbjct: 7 TIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKA 66
Query: 91 DHGKAVELLKQAQRSVKLVV 110
H +A+ +L+Q + V+L +
Sbjct: 67 THDEAINVLRQTPQRVRLTL 86
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 29 HPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
P ++ + K G+G +++ K + IY+ ++ GG AD G L GDQLLSV+G
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 85 VSVEGEDHGKAVELLKQAQRSVKL 108
S+ G +A EL+ + V L
Sbjct: 63 RSLVGLSQERAAELMTRTSSVVTL 86
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 30 PRVVELPKT-DEGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQL 79
PR+VE+ + + LG +++GG+ E+ I+I +++ A + LK GD++
Sbjct: 16 PRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKI 75
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR---YTPKVL 117
L V+GV ++ H +AVE +K A V +V+ TP+V+
Sbjct: 76 LEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSSTPRVI 116
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 29 HPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
P ++ + K G+G +++ K + IY+ ++ GG AD G L GDQLLSV+G
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 85 VSVEGEDHGKAVELLKQAQRSVKL 108
S+ G +A EL+ + V L
Sbjct: 63 RSLVGLSQERAAELMTRTSSVVTL 86
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 32 VVELPKTDEGLGFNVMGGKEQNS-PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
++EL K GLG ++ G K+++ I++ I P G A G ++ GD+LL +N + G
Sbjct: 28 IIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGR 87
Query: 91 DHGKAVELLKQAQRSVKLVVRYTPKVLEEM 120
H A ++K A VKLV + +M
Sbjct: 88 SHQNASAIIKTAPSKVKLVFIRNEDAVNQM 117
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 29 HPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
P ++ + K G+G +++ K + IY+ ++ GG AD G L GDQLLSV+G
Sbjct: 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVV 110
S+ G +A EL+ + V L V
Sbjct: 69 RSLVGLSQERAAELMTRTSSVVTLEV 94
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 30 PRVVELPKTD-EGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
P +VE+ KT LG ++ +N S I I RI P V DR G L GD +LS++G S+
Sbjct: 16 PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRYTPK 115
E +A +LL V+L + P+
Sbjct: 76 EHCSLLEATKLLASISEKVRLEILPVPQ 103
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 38 TDEGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
T++ LGF + G E+ I+ISR++PGG+A G L D++L VNG+ V
Sbjct: 40 TEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVS 99
Query: 89 GEDHGKAVELLKQAQRSVKLVVR 111
G+ + +++ R++ + VR
Sbjct: 100 GKSLDQVTDMMIANSRNLIITVR 122
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+PR +L K EG + E+++ ++ R+I G GL GD++L +NGV V+
Sbjct: 13 NPRECKLSKQ-EGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVD 71
Query: 89 GEDHGKAVELLKQAQRSVKLVV 110
E+H + VEL++++ SV L+V
Sbjct: 72 KEEHAQVVELVRKSGNSVTLLV 93
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 26 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
G +++ L K E LG + EQ I ++RI GG ADR G + GD+L VNG+
Sbjct: 1 GSDSVKIIRLVKNREPLGATIKK-DEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGI 59
Query: 86 SVEGEDHGKAVELLKQAQRSVKL 108
VE + + +++L Q+Q ++
Sbjct: 60 PVEDKRPEEIIQILAQSQGAITF 82
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSP--IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
RV+ + K + GLG ++GG +N +YI +IPGG + G LK GDQL+S+N S+
Sbjct: 17 RVITVTK-ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMI 75
Query: 89 GEDHGKAVELLKQAQ 103
G +A ++ +A+
Sbjct: 76 GVSFEEAKSIITRAK 90
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 33 VELPK---TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
V+LPK + G+ + ++ P+ IS I G VA R G L+ GD+LL+++ + ++
Sbjct: 111 VKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDS 170
Query: 90 EDHGKAVELLKQAQRSVKLVVR 111
AV++L+Q + VKL +R
Sbjct: 171 CSMEDAVQILQQCEDLVKLKIR 192
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 45 NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104
+V + +SP IS I A+R G L+ GD+++++NG+ E +A +LL+ +
Sbjct: 27 SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI 86
Query: 105 SVKLVVRYTPKVLEEM 120
+ K+ + V E +
Sbjct: 87 TSKVTLEIEFDVAESV 102
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ L K +G GFN+ K + YI + PG A R GL+ D+L+ VNG +VEG
Sbjct: 5 PRLCHLRKGPQGYGFNLHSDKSRPGQ-YIRSVDPGSPAAR-SGLRAQDRLIEVNGQNVEG 62
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
H + V +K + +L+V
Sbjct: 63 LRHAEVVASIKAREDEARLLV 83
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query: 42 LGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93
LGF++ GG + + I+++R+ P G A + L+ GD+++ NG S +HG
Sbjct: 5 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINIEHG 62
Query: 94 KAVELLKQAQRSVKLVV 110
+AV LLK Q +V+L++
Sbjct: 63 QAVSLLKTFQNTVELII 79
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query: 42 LGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93
LGF++ GG + + I+++R+ P G A + L+ GD+++ NG S +HG
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINIEHG 61
Query: 94 KAVELLKQAQRSVKLVV 110
+AV LLK Q +V+L++
Sbjct: 62 QAVSLLKTFQNTVELII 78
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ L K G GF++ G K + YI + PG A++ GL GD+L+ VNG +VE
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
E H + V ++ A +V+L+V
Sbjct: 62 ETHQQVVSRIRAALNAVRLLV 82
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 39 DEGLGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
D LGF++ GG + + I+++R+ P G A + L+ GD+++ NG S
Sbjct: 12 DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINI 69
Query: 91 DHGKAVELLKQAQRSVKLVV 110
+HG+AV LLK Q +V+L++
Sbjct: 70 EHGQAVSLLKTFQNTVELII 89
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF + GGK+ N P+ ISRI PG A L +GD +++++GV+ + H +A +K
Sbjct: 13 WGFRLQGGKDFNMPLTISRITPGSKA-AQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 71
Query: 102 AQRSVKLVVR 111
A ++ L ++
Sbjct: 72 ASYNLSLTLQ 81
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 39 DEGLGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
D LGF++ GG + + I+++R+ P G A + L+ GD+++ NG S
Sbjct: 20 DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINI 77
Query: 91 DHGKAVELLKQAQRSVKLVV 110
+HG+AV LLK Q +V+L++
Sbjct: 78 EHGQAVSLLKTFQNTVELII 97
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ L K G GF++ G K + YI + PG A++ GL GD+L+ VNG +VE
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
E H + V ++ A +V+L+V
Sbjct: 62 ETHQQVVSRIRAALNAVRLLV 82
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ L K G GF++ G K + YI + PG A++ GL GD+L+ VNG +VE
Sbjct: 3 PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 60
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
E H + V ++ A +V+L+V
Sbjct: 61 ETHQQVVSRIRAALNAVRLLV 81
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ L K G GF++ G K + YI + PG A++ GL GD+L+ VNG +VE
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
E H + V ++ A +V+L+V
Sbjct: 62 ETHQQVVSRIRAALNAVRLLV 82
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF + GGK+ N P+ ISRI PG A L +GD +++++GV+ + H +A +K
Sbjct: 20 WGFRLQGGKDFNMPLTISRITPGSKA-AQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 78
Query: 102 AQRSVKLVVR 111
A ++ L ++
Sbjct: 79 ASYNLSLTLQ 88
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 37 KTDEG--LGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHG 93
K DE GFNV GG +Q P+ +SR+ PG AD L GDQ++ +NG + H
Sbjct: 11 KPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD 70
Query: 94 KAVELLKQA--QRSVKLVVRYTPKVLE 118
+ V +K + + S +L++ P +E
Sbjct: 71 QVVLFIKASCERHSGELMLLVRPNAVE 97
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 42 LGFNVMGGK--------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93
LGFN++GG+ + I++S+I+ G A + GGL+ D+++ VNG + H
Sbjct: 21 LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHD 80
Query: 94 KAVELLKQAQRSVKL-VVRYT 113
+AVE K A+ + + V+R T
Sbjct: 81 QAVEAFKTAKEPIVVQVLRRT 101
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 33 VELPKTDEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
VEL + G G + GG++ ++P+ + ++ G A R G L+ GD +L +NG S +G
Sbjct: 15 VELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74
Query: 91 DHGKAVELLKQAQRSVKLVVR 111
H +AVE ++ + LV+R
Sbjct: 75 THAQAVERIRAGGPQLHLVIR 95
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR +L K EG + E+++ ++ R+I G GL GD++L +NGV V+
Sbjct: 2 PRESKLSKQ-EGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 60
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
E+H + VEL++++ SV L+V
Sbjct: 61 EEHAQVVELVRKSGNSVTLLV 81
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
RVV + K G GF + G EQ I I I PG A+ G LK D +++VNG SVE
Sbjct: 8 RVVVIKKGSNGYGFYLRAGPEQKGQI-IKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEAL 65
Query: 91 DHGKAVELLKQAQRSVKLVV 110
DH VE++++ L+V
Sbjct: 66 DHDGVVEMIRKGGDQTTLLV 85
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR +L K EG + E+++ ++ R+I G GL GD++L +NGV V+
Sbjct: 3 PRESKLSKQ-EGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 61
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
E+H + VEL++++ SV L+V
Sbjct: 62 EEHAQVVELVRKSGNSVTLLV 82
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 26 GHAHPRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQL 79
GH VEL K ++GLG +++G G + + I++ + GG A R G ++ DQ+
Sbjct: 1 GHMELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQI 60
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
+ V+G+S+ G A +L+ + +V+ V+
Sbjct: 61 VEVDGISLVGVTQNFAATVLRNTKGNVRFVI 91
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 37 KTDEG--LGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHG 93
K DE GFNV GG +Q P+ +SR+ PG AD L GDQ++ +NG + H
Sbjct: 22 KPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD 81
Query: 94 KAVELLKQA 102
+ V +K +
Sbjct: 82 QVVLFIKAS 90
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 37 KTDEG--LGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHG 93
K DE GFNV GG +Q P+ +SR+ PG AD L GDQ++ +NG + H
Sbjct: 24 KPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD 83
Query: 94 KAVELLKQA 102
+ V +K +
Sbjct: 84 QVVLFIKAS 92
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF + GG E P+ +S+I GG A ++ GD+L+++NG + G +A+ L+K
Sbjct: 23 WGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQ-EALILIKG 81
Query: 102 AQRSVKLVVR 111
+ R +KL+VR
Sbjct: 82 SFRILKLIVR 91
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 33 VELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
VEL K ++GLG +++G G + + I++ + GG A R G ++ DQ++ V+G+S
Sbjct: 84 VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 143
Query: 87 VEGEDHGKAVELLKQAQRSVKLVV 110
+ G A +L+ + +V+ V+
Sbjct: 144 LVGVTQNFAATVLRNTKGNVRFVI 167
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
GLG ++ G Q I+IS + PG ++ G L+ GDQ++ VNGV DH +AV +LK
Sbjct: 28 GLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
Query: 101 QAQRSVKLVV 110
+ RS+ + +
Sbjct: 87 -SSRSLTISI 95
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
LG + GG E IYI+ + PG A+ G LK GDQ+L VNG S H +AV LLK
Sbjct: 34 LGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKS 92
Query: 102 AQRSVKLV 109
++ + V
Sbjct: 93 SRHLILTV 100
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
GLG ++ G Q I+IS + PG ++ G L+ GDQ++ VNGV DH +AV +LK
Sbjct: 14 GLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLK 72
Query: 101 QAQ 103
++
Sbjct: 73 SSR 75
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 38 TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+D+ LGF + G E+ I+ISR++PGG+A+ G L D+++ VNG+ V
Sbjct: 41 SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 100
Query: 89 GEDHGKAVELLKQAQRSVKLVVRYTP 114
G+ + +++ S L++ P
Sbjct: 101 GKTLDQVTDMM--VANSSNLIITVKP 124
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 38 TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+D+ LGF + G E+ I+ISR++PGG+A+ G L D+++ VNG+ V
Sbjct: 41 SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 100
Query: 89 GEDHGKAVELLKQAQRSVKLVVRYTP 114
G+ + +++ S L++ P
Sbjct: 101 GKTLDQVTDMM--VANSSNLIITVKP 124
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 32 VVELPKTDEG---LGFNVMGGKEQNS----PIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
E+P D G LG +V G + + + I++ II GG A + G L+ DQL++VNG
Sbjct: 10 TFEVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNG 69
Query: 85 VSVEGEDHGKAVELLKQA 102
S+ G+ + +A+E L+++
Sbjct: 70 ESLLGKANQEAMETLRRS 87
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 50 KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109
+ + + ISRI+ GG A++ G L GD++L +NG+ + G+D + +LL ++ V
Sbjct: 44 RNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV 103
Query: 110 V 110
+
Sbjct: 104 L 104
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 32 VVELPKTDEG---LGFNVMGGKEQNS----PIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
E+P D G LG +V G + + + I++ II GG A + G L+ DQL++VNG
Sbjct: 7 TFEVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNG 66
Query: 85 VSVEGEDHGKAVELLKQAQRS 105
S+ G+ + +A+E L+++ +
Sbjct: 67 ESLLGKANQEAMETLRRSMST 87
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 33 VELPKTDEGLGFNVMG----GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
VEL K +GLG + G K + S I++ I + G ++ GDQ+++V+G +++
Sbjct: 8 VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
Query: 89 GEDHGKAVELLKQAQRSVKLVV 110
G + +AVE+L+ ++V L +
Sbjct: 68 GFTNQQAVEVLRHTGQTVLLTL 89
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 38 TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+D+ LGF + G E+ I+ISR++PGG+A+ G L D+++ VNG+ V
Sbjct: 13 SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 72
Query: 89 GEDHGKAVELLKQAQRSVKLVVRYTP 114
G+ + +++ S L++ P
Sbjct: 73 GKTLDQVTDMM--VANSSNLIITVKP 96
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 32 VVELPKTDEG---LGFNVMGGKEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNG 84
+E+P D G LG ++ G K + + I+I II GG A + G L+ DQL++VNG
Sbjct: 26 TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNG 85
Query: 85 VSVEGEDHGKAVELLKQA 102
++ G+ + +A+E L+++
Sbjct: 86 ETLLGKSNHEAMETLRRS 103
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ + K G GFN+ K + +I + P A+ GL+ D+++ VNGV +EG
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPGQ-FIRSVDPDSPAE-ASGLRAQDRIVEVNGVCMEG 67
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
+ HG V ++ KL+V
Sbjct: 68 KQHGDVVSAIRAGGDETKLLV 88
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 33 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
+L K+ G GF V+GG E + + I ++ G A G ++ GD ++SVN V G H
Sbjct: 22 TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 81
Query: 93 GKAVELLKQ 101
+ V++ +
Sbjct: 82 AQVVKIFQS 90
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 34 ELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93
+L K+ G GF V+GG E + + I ++ G A G ++ GD ++SVN V G H
Sbjct: 5 KLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHA 64
Query: 94 KAVELLKQ 101
+ V++ +
Sbjct: 65 QVVKIFQS 72
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 38 TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+D+ LGF + G E+ I+ISR++PGG+A+ G L D+++ VNG+ V
Sbjct: 15 SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 74
Query: 89 GEDHGKAVELLKQAQRSVKLVVRYTP 114
G+ + +++ S L++ P
Sbjct: 75 GKTLDQVTDMM--VANSSNLIITVKP 98
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 32 VVELPKTDEGLGFNVMGGKEQN--SP-IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
VEL + GLG ++ G + +P +YI ++PG A G L GD++L VNG S+
Sbjct: 11 TVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLL 70
Query: 89 GEDHGKAVELLKQAQRSVKLVV 110
G + +AV+L++ + ++ +V
Sbjct: 71 GLGYLRAVDLIRHGGKKMRFLV 92
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ + K G GFN+ K + +I + P A+ GL+ D+++ VNGV +EG
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPGQ-FIRSVDPDSPAE-ASGLRAQDRIVEVNGVCMEG 67
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
+ HG V ++ KL+V
Sbjct: 68 KQHGDVVSAIRAGGDETKLLV 88
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ + K G GFN+ K + +I + P A+ GL+ D+++ VNGV +EG
Sbjct: 5 PRLCTMKKGPSGYGFNLHSDKSKPGQ-FIRSVDPDSPAE-ASGLRAQDRIVEVNGVCMEG 62
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
+ HG V ++ KL+V
Sbjct: 63 KQHGDVVSAIRAGGDETKLLV 83
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
I+IS++ P G A R G L+ G +LL VN S+ G HG+AV+LL+ ++ ++V
Sbjct: 46 IFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ + K G GFN+ K + +I + P A+ G L+ D+++ VNGV +EG
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPGQ-FIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEG 67
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
+ HG V ++ KL+V
Sbjct: 68 KQHGDVVSAIRAGGDETKLLV 88
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 33 VELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
VEL K ++GLG +++G G + + I++ + GG A R G ++ DQ++ V+G+S
Sbjct: 13 VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 72
Query: 87 VEGEDHGKAVELLKQAQRSVKLVV 110
+ G A +L+ + +V+ V+
Sbjct: 73 LVGVTQNFAATVLRNTKGNVRFVI 96
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 38 TDEGLGFNVMGGKE---QNSPI--YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
+ GLG ++GGKE + I YI++I+PGG A++ G L G Q+L NG+ + + +
Sbjct: 28 SGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTY 87
Query: 93 GKAVELLKQAQRSVKLVVR 111
+ ++ Q ++ VR
Sbjct: 88 EEVQSIISQQSGEAEICVR 106
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 33 VELPKTD-EGLGFNVMG--GKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
VEL + D + LG ++G G S IY+ +IPG A +G ++ D++++V+GV+
Sbjct: 19 VELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVN 78
Query: 87 VEGEDHGKAVELLKQAQRSVKLVV 110
++G + VE+L+ A + V L +
Sbjct: 79 IQGFANHDVVEVLRNAGQVVHLTL 102
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF + GGK+ N P+ IS + GG A + ++ GD +LS++G+S +G H +A +K
Sbjct: 17 WGFRLQGGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKA 75
Query: 102 AQRSVKLVVR 111
S+ + ++
Sbjct: 76 CTGSLNMTLQ 85
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 32 VVELPKT-DEGLGFNVMGGKEQNSP------IYISRIIPGGVADRHGGLKRGDQLLSVNG 84
+V L KT + G ++ G+ ++SP I+I I+P A G LK GD++LS+NG
Sbjct: 8 MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
V ++L+K+A ++L ++ K
Sbjct: 68 KDVRNSTEQAVIDLIKEADFKIELEIQTFDK 98
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF + GG++ ++PI ++++ G A + L+ GD ++++NG S EG H +A ++Q
Sbjct: 13 WGFRITGGRDFHTPIMVTKVAERGKA-KDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 71
Query: 102 AQRSVKL 108
+ ++L
Sbjct: 72 SPSPLRL 78
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF + GG + N P+ I+RI PG A L GD +L+++G E H A + +K
Sbjct: 17 WGFRLSGGIDFNQPLVITRITPGSKA-AAANLCPGDVILAIDGFGTESMTHADAQDRIKA 75
Query: 102 AQRSVKLVVR------YTPKV 116
A + L + ++P+V
Sbjct: 76 ASYQLCLKIDRAETRLWSPQV 96
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF + GG++ ++PI ++++ G A + L+ GD ++++NG S EG H +A ++Q
Sbjct: 14 WGFRITGGRDFHTPIMVTKVAERGKA-KDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 72
Query: 102 AQRSVKL 108
+ ++L
Sbjct: 73 SPSPLRL 79
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
++ P E LGF V G I ++ GG+A+R GG++ G +++ +NG SV
Sbjct: 12 IIHRPHAREQLGFCVEDG-------IICSLLRGGIAER-GGIRVGHRIIEINGQSVVATP 63
Query: 92 HGKAVELLKQAQRSVKL 108
H + +ELL +A V +
Sbjct: 64 HARIIELLTEAYGEVHI 80
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 26 GHAHPRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQL 79
GH VEL K EGLG +++G G + + I++ + GG A R G ++ D L
Sbjct: 1 GHMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
+ V+G S+ G A +L+ + V+ ++
Sbjct: 61 VEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 91
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 27 HAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
A V L K GLGF++ GGK + P+ I+RI G +++ ++ GD++L +
Sbjct: 27 EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG 86
Query: 84 GVSVEGEDHGKAVELLK 100
G +++G +A ++K
Sbjct: 87 GTAMQGLTRFEAWNIIK 103
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
GF + GGK+ N P+ ISR+ PGG A G+ GD +LS++G
Sbjct: 15 WGFRLQGGKDFNVPLSISRLTPGGKA-AQAGVAVGDWVLSIDG 56
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
R V + K D G G V G ++P+++ + G A R G++ GD+++ VNG V
Sbjct: 9 RCVIIQKDDNGFGLTVSG----DNPVFVQSVKEDGAAMR-AGVQTGDRIIKVNGTLVTHS 63
Query: 91 DHGKAVELLKQAQRSVKLVVRYTP 114
+H + V+L+K V L V+ P
Sbjct: 64 NHLEVVKLIKSGSY-VALTVQGRP 86
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 41 GLGFNVMGG----KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAV 96
G G + GG + +SP + I P A+R G L+ GD++LS+NG++ E +A
Sbjct: 28 GFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEAN 87
Query: 97 ELLKQAQRSVKLVVRYTPKVLEEMEMRFDK 126
+LL+ A + K+V +E+ FD
Sbjct: 88 QLLRDAALAHKVV----------LEVEFDS 107
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF + GGK+ N P+ IS + GG A ++ GD +LS++G++ +G H +A +K
Sbjct: 15 WGFRLQGGKDFNMPLTISSLKDGGKA-AQANVRIGDVVLSIDGINAQGMTHLEAQNKIKG 73
Query: 102 AQRSVKLVVR 111
S+ + ++
Sbjct: 74 CTGSLNMTLQ 83
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 29 HPRVVELPKT-DEGLGFNVMGGKEQNS---------PIYISRIIPGGVADRHGGLKRGDQ 78
PR VEL + + LG +++GG+ S I+I ++ A ++G LK GD+
Sbjct: 4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 63
Query: 79 LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
++ V+G+ + H +AVE +++A V +V+
Sbjct: 64 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 96
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 33 VELPKTDEGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
VEL K EGLG +++G G E+ I++ + GG A R G ++ D L+ V+G
Sbjct: 84 VELEKDSEGLGISIIGMGAGADMGLEKLG-IFVKTVTEGGAAHRDGRIQVNDLLVEVDGT 142
Query: 86 SVEGEDHGKAVELLKQAQRSVKLVV 110
S+ G A +L+ + V+ ++
Sbjct: 143 SLVGVTQSFAASVLRNTKGRVRFMI 167
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 33 VELPKTDEGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
VEL K EGLG +++G G E+ I++ + GG A R G ++ D L+ V+G
Sbjct: 84 VELEKDSEGLGISIIGMGAGADMGLEKLG-IFVKTVTEGGAAHRDGRIQVNDLLVEVDGT 142
Query: 86 SVEGEDHGKAVELLKQAQRSVKLVV 110
S+ G A +L+ + V+ ++
Sbjct: 143 SLVGVTQSFAASVLRNTKGRVRFMI 167
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 29/109 (26%)
Query: 30 PRVVELPKTDEGLGFNVM-----------------------GGKEQN-----SPIYISRI 61
P+ V L +T +G GF + GGK++N I++ ++
Sbjct: 9 PKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQV 68
Query: 62 IPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
GG A GL GD+++ VNG SV G+ + + + L++ + +++L V
Sbjct: 69 KEGGPA-FEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 30 PRV--VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
PRV VE+ + G GF + G +P +S ++ G AD GL+ GDQ+L+VN ++V
Sbjct: 1 PRVRSVEVARGRAGYGFTLSG----QAPCVLSCVMRGSPAD-FVGLRAGDQILAVNEINV 55
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
+ H V+L+ + + +V+
Sbjct: 56 KKASHEDVVKLIGKCSGVLHMVI 78
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 29 HPRVVELPKT-DEGLGFNVMGGKEQNS---------PIYISRIIPGGVADRHGGLKRGDQ 78
PR VEL + + LG +++GG+ S I+I ++ A ++G LK GD+
Sbjct: 24 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 83
Query: 79 LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
++ V+G+ + H +AVE +++A V +V+
Sbjct: 84 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 116
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS----VKLVVR 111
+ +S + GG A+RHGG+ +GD+++++NG V +A L++A + LVV
Sbjct: 45 VVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVA 104
Query: 112 YTPKVLEEMEMRF 124
P + E+ F
Sbjct: 105 VCPPKEYDDELTF 117
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
R V + K G GF V G + + + + PGG A + G+K GD+++ VNG V
Sbjct: 10 RCVIIQKDQHGFGFTVSG----DRIVLVQSVRPGGAAMK-AGVKEGDRIIKVNGTMVTNS 64
Query: 91 DHGKAVELLKQ 101
H + V+L+K
Sbjct: 65 SHLEVVKLIKS 75
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 41 GLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
GLGF V KE+ S P+ IS +I GG A++ G ++ GD +L+VN + + A+E+
Sbjct: 21 GLGFLV---KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 77
Query: 99 LK--QAQRSVKLVVRYTPKVLEEMEMRFD---KQRTARRRQP 135
L+ ++ V L++R +E F +T R QP
Sbjct: 78 LRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 119
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 41 GLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
GLGF V KE+ S P+ IS +I GG A++ G ++ GD +L+VN + + A+E+
Sbjct: 16 GLGFLV---KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 72
Query: 99 LK--QAQRSVKLVVRYTPKVLEEMEMRFD---KQRTARRRQP 135
L+ ++ V L++R +E F +T R QP
Sbjct: 73 LRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 114
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 41 GLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
GLGF V KE+ S P+ IS +I GG A++ G ++ GD +L+VN + + A+E+
Sbjct: 14 GLGFLV---KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 70
Query: 99 LK--QAQRSVKLVVRYTPKVLEEMEMRFD---KQRTARRRQP 135
L+ ++ V L++R +E F +T R QP
Sbjct: 71 LRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 112
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 30 PRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
R+V+ K TDE +G + E N I ++RI+ GG+ R G L GD++ +NG+SV
Sbjct: 2 SRLVQFQKNTDEPMGIT-LKMNELNHCI-VARIMHGGMIHRQGTLHVGDEIREINGISVA 59
Query: 89 GEDHGKAVELLKQAQRSVKL 108
+ + ++L++ + S+
Sbjct: 60 NQTVEQLQKMLREMRGSITF 79
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 37 KTDEGLGFNVMGGKEQNSP-----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
K LG ++ G ++Q++ IY+ +IPG A G ++ D++L V+ V+V+G
Sbjct: 22 KDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMA 81
Query: 92 HGKAVELLKQA 102
VE+L+ A
Sbjct: 82 QSDVVEVLRNA 92
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
GL E + IYIS I P +A + G ++ GD+++ +NG+ V+ + A+ L
Sbjct: 35 GLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVAL-LTS 93
Query: 101 QAQRSVKLVVRYTPKVLEEMEMRFDK 126
+ ++ L++ L+E M D
Sbjct: 94 EENKNFSLLIARPELQLDEGWMDDDS 119
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 32 VVELPKTDEGLGFNVMGGKEQNSPI-YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
+V + K+ LG + GG P+ I I GG A G LK G +L VNG+++ G+
Sbjct: 9 LVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGK 68
Query: 91 DHGKAVELLKQAQRS 105
+H +A ++ +A ++
Sbjct: 69 EHREAARIIAEAFKT 83
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 31 RVVELPKTD-EGLGFNVMGGKEQNSPI-------------YISRIIPGGVADRHGGLKRG 76
+ V L K D EG GF + G K Q +PI Y+ + GGVA R GL+ G
Sbjct: 9 KTVLLQKKDSEGFGFVLRGAKAQ-TPIEEFTPTPAFPALQYLESVDEGGVAWR-AGLRMG 66
Query: 77 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
D L+ VNG +V H + V +++Q ++ + V
Sbjct: 67 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 31 RVVELPKTD-EGLGFNVMGGKEQNSPI-------------YISRIIPGGVADRHGGLKRG 76
+ V L K D EG GF + G K Q +PI Y+ + GGVA R GL+ G
Sbjct: 9 KTVLLQKKDSEGFGFVLRGAKAQ-TPIEEFTPTPAFPALQYLESVDEGGVAWR-AGLRMG 66
Query: 77 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
D L+ VNG +V H + V +++Q ++ + V
Sbjct: 67 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 31 RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
R+++ K T+E +G + ++Q+ + +RI+ GG+ R G L GD++L +NG +V
Sbjct: 14 RLIQFEKVTEEPMGITLKLNEKQSCTV--ARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 90 EDHGKAVELLKQAQRSVK 107
+V+ L++A + K
Sbjct: 72 H----SVDQLQKAMKETK 85
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 31 RVVELPKTD-EGLGFNVMGGKEQNSPI-------------YISRIIPGGVADRHGGLKRG 76
+ V L K D EG GF + G K Q +PI Y+ + GGVA R GL+ G
Sbjct: 29 KTVLLQKKDSEGFGFVLRGAKAQ-TPIEEFTPTPAFPALQYLESVDEGGVAWR-AGLRMG 86
Query: 77 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
D L+ VNG +V H + V +++Q ++ + V
Sbjct: 87 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 120
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF + GG++ ++PI ++++ G A+ L+ GD ++++NG S E H +A ++Q
Sbjct: 18 WGFRISGGRDFHTPIIVTKVTERGKAE-AADLRPGDIIVAINGQSAENMLHAEAQSKIRQ 76
Query: 102 AQRSVKL 108
+ ++L
Sbjct: 77 SASPLRL 83
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds
To Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
E GF+V G + +Y+ I P G D GGLK D+LL VN V D V L+
Sbjct: 19 EDFGFSVADGLLEKG-VYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRTRDFDCCLVVPLI 76
Query: 100 KQAQRSVKLVVRYTP 114
++ + LV+ P
Sbjct: 77 AESGNKLDLVISRNP 91
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 31 RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
R+++ K T+E +G + ++Q+ + +RI+ GG+ R G L GD++L +NG +V
Sbjct: 14 RLIQFEKVTEEPMGICLKLNEKQSCTV--ARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 90 EDHGKAVELLKQAQRSVK 107
+V+ L++A + K
Sbjct: 72 H----SVDQLQKAMKETK 85
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK--QAQRSVKLVVRYT 113
+ ++ ++ GG A R G L GDQ++S+NG S+ G ++K + Q VKL +
Sbjct: 218 VILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSC 277
Query: 114 PKVLE 118
P V E
Sbjct: 278 PPVTE 282
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 33 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 76
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 16 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 74
Query: 77 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 110
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 75 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 36 PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA 95
P LGF+V G I ++ GG+A+R GG++ G +++ +NG SV H K
Sbjct: 20 PDLRYQLGFSVQNG-------IICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKI 71
Query: 96 VELLKQA 102
V +L A
Sbjct: 72 VHILSNA 78
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 45 NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104
+V + +SP IS I A+R G L+ GD+++++NG+ E +A +LL+ +
Sbjct: 27 SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI 86
Query: 105 SVKLVVRYTPKVLEEMEMRFD 125
+ K+ +E+ FD
Sbjct: 87 TSKVT----------LEIEFD 97
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF ++GGK+ P+ ISR+ PG A L GD + +++G + H +A +K
Sbjct: 15 WGFRLVGGKDFEQPLAISRVTPGSKA-ALANLCIGDVITAIDGENTSNMTHLEAQNRIKG 73
Query: 102 AQRSVKLVV 110
++ L V
Sbjct: 74 CTDNLTLTV 82
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 33 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 76
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 16 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 74
Query: 77 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 110
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 75 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 33 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 76
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 17 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 75
Query: 77 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 110
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 76 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 110
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 36 PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA 95
P LGF+V G I ++ GG+A+R GG++ G +++ +NG SV H K
Sbjct: 11 PDLRYQLGFSVQNG-------IICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKI 62
Query: 96 VELLKQA 102
V +L A
Sbjct: 63 VHILSNA 69
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 45 NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104
+V + +SP IS I A+R G L+ GD+++++NG+ E +A +LL+ +
Sbjct: 36 SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI 95
Query: 105 SVKLVVRYTPKVLEEMEMRFD 125
+ K+ +E+ FD
Sbjct: 96 TSKVT----------LEIEFD 106
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 33 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 76
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 16 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 74
Query: 77 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 110
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 75 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 33 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 76
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 27 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 85
Query: 77 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 110
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 86 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 120
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 33 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 76
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 8 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 66
Query: 77 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 110
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 67 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 101
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 26 GHAHPRVVELPKTDEGLGF--NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
G + P++ L K + G GF N + G + +I + GG AD G L+ D ++ VN
Sbjct: 4 GSSGPKLCRLAKGENGYGFHLNAIRGLPGS---FIKEVQKGGPADLAG-LEDEDVIIEVN 59
Query: 84 GVSVEGEDHGKAVELLKQAQRSVKLVV 110
GV+V E + K V+ ++ + ++V L+V
Sbjct: 60 GVNVLDEPYEKVVDRIQSSGKNVTLLV 86
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 18/95 (18%)
Query: 33 VELPKTDEG----LGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKRG 76
VE+ K +G LGF++ GG +Q+ IY++R+ GG A+ GL+ G
Sbjct: 6 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE-IAGLQIG 64
Query: 77 DQLLSVNGVSVEGEDHGKAVE-LLKQAQRSVKLVV 110
D+++ VNG + H +A + L K+++ V+L+V
Sbjct: 65 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 99
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 43 GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102
GF++ ++ P+ + + GG A HG L GDQ+L +N E +AV++L++A
Sbjct: 24 GFHI----SESLPLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREA 77
Query: 103 QRSVKL-VVRYT 113
+ S+ + VVR T
Sbjct: 78 EDSLSITVVRCT 89
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK--QAQRSVKLVVRYT 113
+ I+ ++ GG A++ G L GDQ++S+NG S+ G ++K + Q VKL +
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVRC 90
Query: 114 PKVLEEMEMRFD 125
P V + R D
Sbjct: 91 PPVTTVLIRRPD 102
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
LGF+V G I ++ GG+A+R GG++ G +++ +NG SV H K V +L
Sbjct: 107 LGFSVQNG-------IICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILSN 158
Query: 102 A 102
A
Sbjct: 159 A 159
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 40 EGLGFNVM--GGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVE 97
EGLG ++ G I+ ++ GG A+R G L GD+L ++NG S+ G
Sbjct: 21 EGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQA 80
Query: 98 LLKQ--AQRSVKLVVRYTPKV 116
+++ +Q SV L + + P V
Sbjct: 81 AVRETKSQTSVTLSIVHCPPV 101
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF ++GG++ ++P+ ISR+ G A L GD + ++NG S E H +A +K
Sbjct: 20 WGFRLVGGRDFSAPLTISRVHAGSKAAL-AALCPGDLIQAINGESTELMTHLEAQNRIKG 78
Query: 102 AQRSVKLVVRYTPK 115
+ L V P
Sbjct: 79 CHDHLTLSVSSGPS 92
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
GF ++GG++ ++P+ ISR+ G A L GD + ++NG S E H +A +K
Sbjct: 14 WGFRLVGGRDFSAPLTISRVHAGSKAAL-AALCPGDLIQAINGESTELMTHLEAQNRIKG 72
Query: 102 AQRSVKLVV 110
+ L V
Sbjct: 73 CHDHLTLSV 81
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 42 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
LG +++G + IYI I+ GG G ++ GD LL VN V+ E + AV +L
Sbjct: 12 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 71
Query: 100 KQ 101
++
Sbjct: 72 RE 73
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 30 PRVVELPKTDEGLGF--NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
P++ L K + G GF N + G + +I + GG AD GL+ D ++ VNGV+V
Sbjct: 4 PKLCRLAKGENGYGFHLNAIRGLPGS---FIKEVQKGGPADL-AGLEDEDVIIEVNGVNV 59
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
E + K V+ ++ + ++V L+V
Sbjct: 60 LDEPYEKVVDRIQSSGKNVTLLV 82
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 28 AHPRVVELPKTDEGLGF--NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
+ P++ L K + G GF N + G + +I + GG AD GL+ D ++ VNGV
Sbjct: 2 SKPKLCRLAKGENGYGFHLNAIRGLPGS---FIKEVQKGGPADL-AGLEDEDVIIEVNGV 57
Query: 86 SVEGEDHGKAVELLKQAQRSVKLVV 110
+V E + K V+ ++ + ++V L+V
Sbjct: 58 NVLDEPYEKVVDRIQSSGKNVTLLV 82
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 30 PRVVELPKTDEGLGFNVM--GGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
PR + L K +G GF + G + ++ + PG + + G++ GD+L++V G SV
Sbjct: 4 PRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPG-LPAKKAGMQAGDRLVAVAGESV 62
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
EG H + V ++ V L V
Sbjct: 63 EGLGHEETVSRIQGQGSCVSLTV 85
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 42 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
LG +++G + IYI I+ GG G ++ GD LL VN V+ E + AV +L
Sbjct: 15 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 74
Query: 100 KQ 101
++
Sbjct: 75 RE 76
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
S I++ + G+A + G L GD +L +NG E A +L+++++ ++LVV
Sbjct: 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
S I++ + G+A + G L GD +L +NG E A +L+++++ ++LVV
Sbjct: 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
S I++ I +A R G ++ GD +L +NG E A L+++++ +K+VV+
Sbjct: 23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQ 80
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 31 RVVELPKTD-EGLGFNVMGGKEQN-----SPIY--ISRIIPGGVADRHGGLKRGDQLLSV 82
++V + K D E GF + + QN S ++ I +I A GL+ GD L ++
Sbjct: 17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPA-HCAGLQAGDVLANI 75
Query: 83 NGVSVEGEDHGKAVELLKQA 102
NGVS EG + + V+L++ +
Sbjct: 76 NGVSTEGFTYKQVVDLIRSS 95
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
S I++ I +A R G ++ GD +L +NG E A L+++++ +K+VV+
Sbjct: 20 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQ 77
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 42 LGFNVMGGKEQNS---PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
LG V+GGK S +I+++ G +AD G L+ GD++L NG ++G + +
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNI 109
Query: 99 LKQA--QRSVKLVV 110
+ ++ + V+LVV
Sbjct: 110 ILESKPEPQVELVV 123
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
GL GD + SVNG++VEG H + V+++K + ++L Y+ +
Sbjct: 53 AGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYSSTL 98
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK--QAQRSVKLVVRYT 113
+ I+ ++ GG A++ G L GDQ++S+NG S+ G ++K + Q VKL +
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVSG 94
Query: 114 PK 115
P
Sbjct: 95 PS 96
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
S I++ I +A R G ++ GD +L +NG E A L+++++ +K+VV+
Sbjct: 21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQ 78
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 42 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
LG +++G + + IYI I+ GG G ++ GD LL VN ++ E + AV +L
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 100 KQ 101
+
Sbjct: 79 RD 80
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 33.1 bits (74), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 42 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
LG +++G + + IYI I GG G ++ GD LL VN ++ E + AV +L
Sbjct: 13 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 72
Query: 100 KQ 101
+
Sbjct: 73 RD 74
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK--QAQRSVKL-VVR 111
+ I+ ++ GG A++ G L GDQ++S+NG S+ G ++K + Q VKL +VR
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVR 89
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 42 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
LG +++G + + IYI I GG G ++ GD LL VN ++ E + AV +L
Sbjct: 15 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 74
Query: 100 KQ 101
+
Sbjct: 75 RD 76
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 42 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
LG +++G + + IYI I GG G ++ GD LL VN ++ E + AV +L
Sbjct: 15 LGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVL 74
Query: 100 KQ 101
+
Sbjct: 75 RD 76
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
GL GD + SVNG++VEG H + V+++K + ++L Y
Sbjct: 53 AGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 32.3 bits (72), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 42 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
LG +++G + + IYI I+ GG G ++ GD LL VN ++ E + AV +L
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 100 KQ 101
+
Sbjct: 79 RD 80
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 36/67 (53%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
+G ++ GG + +YI ++ A G + GD++ VNG S++G+ + +++++
Sbjct: 33 IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE 92
Query: 102 AQRSVKL 108
+ V +
Sbjct: 93 VKGEVTI 99
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
GL GD + SVNG++VEG H + V+++K + ++L Y
Sbjct: 53 AGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 42 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
LG +++G + + IYI I+ GG G ++ GD LL VN ++ E + AV +L
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 100 KQ 101
+
Sbjct: 79 RD 80
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 42 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
LG +++G + + IYI I+ GG G ++ GD LL VN ++ E + AV +L
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 100 KQ 101
+
Sbjct: 79 RD 80
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 30 PRVVELPKTDEGL-GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
P V L K + L G ++ GG + +YI ++ A G + GD++ VNG S++
Sbjct: 3 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 62
Query: 89 GEDHGKAVELLKQAQRSVKL 108
G+ + +++++ + V +
Sbjct: 63 GKTKVEVAKMIQEVKGEVTI 82
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 42 LGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
LG +++G + + IYI I+ GG G ++ GD LL VN ++ E + AV +L
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 100 KQ 101
+
Sbjct: 79 RD 80
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 30 PRVVELPKTDEGL-GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
P V L K + L G ++ GG + +YI ++ A G + GD++ VNG S++
Sbjct: 25 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 84
Query: 89 GEDHGKAVELLKQAQRSVKL 108
G+ + +++++ + V +
Sbjct: 85 GKTKVEVAKMIQEVKGEVTI 104
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 26 GHAHPRVVELPKTDEGL-GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
G P V L K + L G ++ GG + +YI ++ A G + GD++ VNG
Sbjct: 2 GSGVPGKVTLQKDAQNLIGISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNG 61
Query: 85 VSVEGEDHGKAVELLKQAQRSVKL 108
S++G+ + +++++ + V +
Sbjct: 62 RSIKGKTKVEVAKMIQEVKGEVTI 85
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 26 GHAHPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
G PR V L K +G +G + K ++ I++ +++ GL+ GDQ+L +NG
Sbjct: 1 GAMDPREVILCKDQDGKIGLRL---KSIDNGIFV-QLVQANSPASLVGLRFGDQVLQING 56
Query: 85 VSVEGEDHGKAVELLKQA 102
+ G KA ++LKQA
Sbjct: 57 ENCAGWSSDKAHKVLKQA 74
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk P55
Subfamily Member 2
Length = 91
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 31 RVVELPKTDE---GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
R+V + KT G+ F V GG+ + I+RI+ GG+ + G L GD + VNG V
Sbjct: 8 RMVGIRKTAGEHLGVTFRVEGGE-----LVIARILHGGMVAQQGLLHVGDIIKEVNGQPV 62
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRYTPK 115
G D ELL+ A SV L + P
Sbjct: 63 -GSDPRALQELLRNASGSVILKILSGPS 89
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 26 GHAHPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
G PR V L K +G +G + K ++ I++ +++ GL+ GDQ+L +NG
Sbjct: 1 GAXDPREVILCKDQDGKIGLRL---KSIDNGIFV-QLVQANSPASLVGLRFGDQVLQING 56
Query: 85 VSVEGEDHGKAVELLKQA 102
+ G KA ++LKQA
Sbjct: 57 ENCAGWSSDKAHKVLKQA 74
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
+Y++ + G+A + G LK GD++L +N + + + + L +Q S+ L+VR P+
Sbjct: 46 LYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFL--SQPSLGLLVRTYPE 102
Query: 116 VLEEME 121
+ E +E
Sbjct: 103 LEEGVE 108
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 42 LGFNVMGGKEQNSP---IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
LG V+GGK + +I+++ G +AD G L+ GD++L NG + G + + +
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNI 98
Query: 99 LKQAQ 103
+ +++
Sbjct: 99 ILESK 103
>pdb|3GGE|A Chain A, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|B Chain B, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
pdb|3GGE|C Chain C, Crystal Structure Of The Pdz Domain Of Pdz
Domain-Containing Protein Gipc2
Length = 95
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 35 LPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
L TD G+G+ +I RI GGV D + GD + S+NG ++ G H
Sbjct: 20 LTITDNGVGYA-----------FIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRH 66
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 35 LPKTDEG--LGFNVMGGKEQNSP---IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
+PK D G LG V+GGK + +I+++ G +AD G L+ GD++L NG + G
Sbjct: 31 MPK-DSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPG 89
Query: 90 EDHGKAVELLKQAQ 103
+ + ++ +++
Sbjct: 90 ATNEEVYNIILESK 103
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 47 MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106
MG + + ++ + G + GL+ GD + +NG SV G H VELL ++ +
Sbjct: 26 MGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKI 85
Query: 107 KL 108
L
Sbjct: 86 SL 87
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108
GLK GD + +NG V G H + +ELL ++ V +
Sbjct: 49 AGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSI 86
>pdb|1VAE|A Chain A, Solution Structure Of The Pdz Domain Of Mouse Rhophilin-2
Length = 111
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR + + LGF + G N+P+ + + P A G K GD ++S+ GV +
Sbjct: 16 PRGIHFTVEEGDLGFTLRG----NTPVQVHFLDPHCSASL-AGAKEGDYIVSIQGVDCKW 70
Query: 90 EDHGKAVELLKQ 101
+ ++LLK
Sbjct: 71 LTVSEVMKLLKS 82
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
+Y++ + G+A + G LK GD++L +N + + + + L +Q S+ L+VR P+
Sbjct: 37 LYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFL--SQPSLGLLVRTYPE 93
Query: 116 V 116
+
Sbjct: 94 L 94
>pdb|3SYV|A Chain A, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|B Chain B, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|C Chain C, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|D Chain D, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|E Chain E, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|F Chain F, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|G Chain G, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|H Chain H, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
Length = 347
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 94 KAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRR 133
+A ++ Q ++++ + RYTP+ +E+ME F+ + A R+
Sbjct: 204 EAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQ 243
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of
Pdz Domain And Ligand Resonances
Length = 105
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 57 YISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
YI +IP A+ GGLK D ++S+NG SV
Sbjct: 38 YIIEVIPDTPAE-AGGLKENDVIISINGQSV 67
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 72 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
GL++GD + VNG V G H + VEL+ ++ K+ + TP
Sbjct: 53 GLRQGDLITHVNGEPVHGLVHTEVVELILKSGN--KVAISTTP 93
>pdb|3QE6|A Chain A, Mouse Pacsin 3 F-Bar Domain Structure
pdb|3QE6|B Chain B, Mouse Pacsin 3 F-Bar Domain Structure
Length = 304
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 94 KAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRR 133
+A ++ Q ++++ + RYTP+ +E+ME F+ + A R+
Sbjct: 198 EAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQ 237
>pdb|3M3W|A Chain A, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
pdb|3M3W|B Chain B, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
Length = 320
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 94 KAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARR 132
+A ++ Q ++++ + RYTP+ +E+ME F+ + A R
Sbjct: 198 EAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAER 236
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 57 YISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
YI +IP A+ GGLK D ++S+NG SV
Sbjct: 257 YIIEVIPDTPAEA-GGLKENDVIISINGQSV 286
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 57 YISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
YI +IP A+ GGLK D ++S+NG SV
Sbjct: 257 YIIEVIPDTPAEA-GGLKENDVIISINGQSV 286
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 57 YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
YI +IP A+ GGLK D ++S+NG SV + V + + + ++ +VVR
Sbjct: 51 YIIEVIPDTPAE-AGGLKENDVIISINGQSVVSAND---VSDVIKRESTLNMVVR 101
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 33 VELPKTDEGLGFNVMGGKEQNSP-IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
V L K D G + + + P ++I ++ GG+A + G L D++L++NG ++
Sbjct: 7 VALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGT 66
Query: 92 HGKAVELLKQAQRSVKLVV 110
A ++++ + V L +
Sbjct: 67 PELAAQIIQASGERVNLTI 85
>pdb|3OUL|A Chain A, Crystal Structure Of Toxoflavin-Degrading Enzyme In A
Substrate-Free Form
pdb|3OUM|A Chain A, Crystal Structure Of Toxoflavin-Degrading Enzyme In
Complex With Toxoflavin
Length = 232
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 76 GDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108
DQLLS+ +++ D +A LKQA+ VKL
Sbjct: 130 ADQLLSIGEINITTSDVEQAATRLKQAELPVKL 162
>pdb|3PKV|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla)
pdb|3PKW|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
Mn(Ii)
pdb|3PKX|A Chain A, Crystal Structure Of Toxoflavin Lyase (Tfla) Bound To
Mn(Ii) And Toxoflavin
Length = 252
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 76 GDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108
DQLLS+ +++ D +A LKQA+ VKL
Sbjct: 153 ADQLLSIGEINITTSDVEQAATRLKQAELPVKL 185
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 47 MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106
MG + S +I + G + GL GD + VNG V G H + VEL+ ++
Sbjct: 29 MGDTDVYSVHHIVWHVEEGGPAQEAGLCAGDLITHVNGEPVHGMVHPEVVELILKSGN-- 86
Query: 107 KLVVRYTP 114
K+ V TP
Sbjct: 87 KVAVTTTP 94
>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
pdb|3S51|A Chain A, Structure Of Fanci
pdb|3S51|B Chain B, Structure Of Fanci
pdb|3S51|C Chain C, Structure Of Fanci
pdb|3S51|D Chain D, Structure Of Fanci
Length = 1308
Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 113
SP+ + R + D HG L DQ V +E DH V L A LV+
Sbjct: 1037 SPVTLLRDLS---QDIHGQLGDIDQ-----DVEIEKTDHFAVVNLRTAAPTVCLLVLSQA 1088
Query: 114 PKVLEEME 121
KVLEE++
Sbjct: 1089 EKVLEEVD 1096
>pdb|3O5N|A Chain A, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|B Chain B, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|C Chain C, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|D Chain D, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|E Chain E, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|F Chain F, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|G Chain G, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|H Chain H, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
Length = 112
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 31 RVVELPKTD-EGLGFNVMGGK-----EQNSPI-------YISRIIPGGVADRHGGLKRGD 77
+V L K D EG GF + G K E+ +P Y+ + GVA R GL+ GD
Sbjct: 12 KVAILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWR-AGLRTGD 70
Query: 78 QLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK 115
L+ VNGV+V H + V L++Q R V VV T K
Sbjct: 71 FLIEVNGVNVVKVGHKQVVGLIRQGGNRLVMKVVSVTRK 109
>pdb|2RHE|A Chain A, Structure Of A Novel Bence-Jones Protein (Rhe) Fragment
At 1.6 Angstroms Resolution
Length = 114
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQL-LSVNGVSVEGE 90
IY + ++P GV+DR K G L+++G+ E E
Sbjct: 49 IYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDE 84
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 94 KAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 138
KA++L+ +A V+L TP L+E+E + D+ R + SQ
Sbjct: 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQ 417
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 94 KAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 138
KA++L+ +A V+L TP L+E+E + D+ R + SQ
Sbjct: 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQ 417
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 63 PGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
PGG A++ G + GD +++V+G +V+G +LL+ S VV + P
Sbjct: 108 PGGPAEKAGA-RAGDVIVTVDGTAVKGXSLYDVSDLLQGEADSQVEVVLHAP 158
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Membrane
Associated Guanylate Kinase, C677s And C709s Double
Mutant
Length = 88
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 69 RHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102
R GLK GD ++ VN +V+ H + V++L ++
Sbjct: 39 RSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVES 72
>pdb|1JVK|A Chain A, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1JVK|B Chain B, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1LGV|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LGV|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LHZ|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
pdb|1LHZ|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
Length = 216
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 63 PGGVADRHGGLKRGDQL-LSVNGVSVEGE 90
P GV+DR G K G+ L+++G+ E E
Sbjct: 57 PSGVSDRFSGSKSGNSASLTISGLQAEDE 85
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 51 EQNSPIYISR---IIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 107
E N P+ R I G A G K+GD+++ ++ + GE +A+E L+ A V
Sbjct: 337 EMNVPLIYPRREAKIYGTKAAIEGEYKKGDRVVIIDDLVSTGETKVEAIEKLRSAGLEVV 396
Query: 108 LVV 110
+V
Sbjct: 397 SIV 399
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 63 PGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
PGG A++ G + GD +++V+G +V+G +LL+ S VV + P
Sbjct: 108 PGGPAEKAGA-RAGDVIVTVDGTAVKGLSLYDVSDLLQGEADSQVEVVLHAP 158
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 51 EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
E +S IY+ + P + R GG++ GD ++ VNG
Sbjct: 32 EVSSGIYVQEVAPNSPSQR-GGIQDGDIIVKVNG 64
>pdb|3G04|A Chain A, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
Length = 216
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQL-LSVNGVSVEGE 90
IY +P GV+DR G + G L++ G+ E E
Sbjct: 49 IYYDDQLPSGVSDRFSGSRSGTSASLAIRGLQSEDE 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,752,474
Number of Sequences: 62578
Number of extensions: 138104
Number of successful extensions: 641
Number of sequences better than 100.0: 278
Number of HSP's better than 100.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 286
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)