Query psy12579
Match_columns 138
No_of_seqs 157 out of 1479
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 22:56:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3550|consensus 99.9 5.5E-27 1.2E-31 152.3 10.5 134 3-136 64-197 (207)
2 PF00595 PDZ: PDZ domain (Also 99.7 1.4E-15 3.1E-20 91.3 10.2 79 32-111 1-81 (81)
3 KOG3209|consensus 99.5 1.4E-13 3E-18 108.2 9.7 89 25-113 894-982 (984)
4 KOG3549|consensus 99.4 2.8E-13 6E-18 99.2 7.4 90 24-113 49-139 (505)
5 cd00992 PDZ_signaling PDZ doma 99.4 6.4E-12 1.4E-16 75.2 11.4 79 31-110 2-81 (82)
6 smart00228 PDZ Domain present 99.4 2.4E-11 5.3E-16 72.9 12.3 82 31-113 3-84 (85)
7 KOG3209|consensus 99.3 2.2E-11 4.7E-16 96.1 9.8 85 29-113 649-735 (984)
8 KOG3551|consensus 99.3 1.1E-11 2.3E-16 91.9 6.6 86 31-116 86-172 (506)
9 cd00136 PDZ PDZ domain, also c 99.3 1.1E-10 2.5E-15 67.7 9.5 67 41-110 2-69 (70)
10 PF13180 PDZ_2: PDZ domain; PD 99.1 2.6E-09 5.6E-14 64.1 9.8 72 41-116 2-75 (82)
11 KOG1892|consensus 99.0 1.8E-09 4E-14 87.8 9.8 98 28-126 932-1032(1629)
12 KOG3651|consensus 99.0 1.5E-09 3.2E-14 78.6 8.1 101 30-130 5-109 (429)
13 KOG3580|consensus 99.0 1.1E-09 2.3E-14 85.6 7.7 84 29-114 8-98 (1027)
14 cd00988 PDZ_CTP_protease PDZ d 99.0 4.7E-09 1E-13 63.1 8.8 70 40-113 2-72 (85)
15 KOG3553|consensus 99.0 1.1E-09 2.5E-14 66.8 4.7 69 42-112 37-115 (124)
16 KOG3571|consensus 98.9 1.2E-08 2.6E-13 78.2 8.3 86 28-113 248-339 (626)
17 cd00991 PDZ_archaeal_metallopr 98.8 8.4E-08 1.8E-12 57.1 9.0 60 53-115 9-70 (79)
18 KOG3552|consensus 98.8 1E-08 2.2E-13 83.3 6.4 91 29-126 55-148 (1298)
19 KOG3542|consensus 98.8 1.7E-08 3.8E-13 80.0 7.5 102 25-128 531-634 (1283)
20 cd00989 PDZ_metalloprotease PD 98.8 1.4E-07 2.9E-12 55.9 9.0 59 54-115 12-71 (79)
21 KOG3938|consensus 98.8 1.6E-08 3.5E-13 72.0 5.2 113 7-121 104-218 (334)
22 KOG3606|consensus 98.7 4.1E-08 8.9E-13 70.2 7.1 83 30-112 159-252 (358)
23 cd00990 PDZ_glycyl_aminopeptid 98.7 1.4E-07 3.1E-12 56.0 8.4 67 42-115 3-69 (80)
24 PLN00049 carboxyl-terminal pro 98.7 2.5E-07 5.3E-12 70.7 9.6 75 40-115 85-163 (389)
25 KOG3580|consensus 98.6 8.9E-08 1.9E-12 75.1 6.7 91 28-122 406-498 (1027)
26 cd00987 PDZ_serine_protease PD 98.6 5.7E-07 1.2E-11 54.4 8.6 60 53-115 23-84 (90)
27 TIGR00225 prc C-terminal pepti 98.6 3.3E-07 7.2E-12 68.6 8.5 71 40-114 51-122 (334)
28 cd00986 PDZ_LON_protease PDZ d 98.5 2.2E-06 4.8E-11 50.8 8.6 58 54-115 8-67 (79)
29 COG0793 Prc Periplasmic protea 98.5 9.6E-07 2.1E-11 67.7 8.7 71 40-113 100-171 (406)
30 KOG0609|consensus 98.4 1.7E-06 3.6E-11 67.2 8.9 87 25-113 118-205 (542)
31 PRK11186 carboxy-terminal prot 98.4 1.2E-06 2.5E-11 70.8 8.4 71 40-113 244-320 (667)
32 TIGR01713 typeII_sec_gspC gene 98.4 4.5E-06 9.8E-11 60.4 9.1 61 53-116 190-252 (259)
33 TIGR02037 degP_htrA_DO peripla 98.3 4.4E-06 9.6E-11 64.5 8.5 60 54-116 257-318 (428)
34 PRK10139 serine endoprotease; 98.2 8.6E-06 1.9E-10 63.4 8.7 59 54-115 390-448 (455)
35 PRK10942 serine endoprotease; 98.2 1.1E-05 2.4E-10 63.1 8.7 59 54-115 408-466 (473)
36 PRK10139 serine endoprotease; 98.2 1.6E-05 3.4E-10 62.0 9.0 60 53-115 289-350 (455)
37 TIGR02037 degP_htrA_DO peripla 98.1 1.6E-05 3.6E-10 61.4 8.7 59 54-115 362-422 (428)
38 TIGR00054 RIP metalloprotease 98.1 1.6E-05 3.5E-10 61.3 8.5 59 54-115 203-262 (420)
39 TIGR02038 protease_degS peripl 98.1 1.8E-05 3.8E-10 59.8 8.2 59 54-115 278-338 (351)
40 KOG3605|consensus 98.1 5.2E-06 1.1E-10 65.8 5.3 87 31-117 647-738 (829)
41 PRK10898 serine endoprotease; 98.1 2E-05 4.4E-10 59.5 7.4 59 54-115 279-339 (353)
42 KOG3605|consensus 98.0 6E-06 1.3E-10 65.5 4.5 73 28-108 735-809 (829)
43 PRK10779 zinc metallopeptidase 98.0 3.3E-05 7.2E-10 60.1 8.5 58 55-115 222-280 (449)
44 PRK10942 serine endoprotease; 98.0 2.4E-05 5.1E-10 61.3 7.6 60 53-115 310-371 (473)
45 PRK10779 zinc metallopeptidase 98.0 1.3E-05 2.9E-10 62.3 6.1 57 56-115 128-186 (449)
46 TIGR02860 spore_IV_B stage IV 97.9 0.00017 3.6E-09 55.2 9.2 68 40-115 96-172 (402)
47 PF04495 GRASP55_65: GRASP55/6 97.8 0.00013 2.8E-09 48.0 6.8 81 29-112 10-100 (138)
48 KOG0606|consensus 97.7 0.00014 3.1E-09 61.0 7.6 79 32-111 629-714 (1205)
49 TIGR00054 RIP metalloprotease 97.6 0.00024 5.3E-09 54.9 7.0 58 54-114 128-185 (420)
50 KOG3532|consensus 97.6 0.00048 1E-08 55.5 8.4 81 40-125 386-466 (1051)
51 PF14685 Tricorn_PDZ: Tricorn 97.6 0.00069 1.5E-08 41.1 7.3 69 42-115 3-81 (88)
52 TIGR03279 cyano_FeS_chp putati 97.6 0.00021 4.6E-09 55.0 6.2 52 58-114 2-54 (433)
53 KOG1738|consensus 97.3 0.0005 1.1E-08 54.7 5.3 76 37-114 210-285 (638)
54 KOG3129|consensus 97.2 0.002 4.4E-08 44.8 6.7 60 55-115 140-201 (231)
55 COG0265 DegQ Trypsin-like seri 97.1 0.0022 4.7E-08 48.4 6.8 60 53-115 269-330 (347)
56 KOG4407|consensus 96.9 0.002 4.2E-08 55.3 5.1 69 56-125 145-214 (1973)
57 COG3975 Predicted protease wit 96.8 0.0042 9.2E-08 48.8 6.1 41 41-85 452-492 (558)
58 PRK09681 putative type II secr 96.8 0.004 8.8E-08 45.5 5.7 45 71-117 223-269 (276)
59 COG3031 PulC Type II secretory 96.3 0.029 6.2E-07 40.1 7.0 70 31-115 196-267 (275)
60 COG3480 SdrC Predicted secrete 96.3 0.027 6E-07 41.8 7.2 57 55-115 131-189 (342)
61 KOG1421|consensus 96.1 0.016 3.4E-07 47.2 5.8 56 56-115 305-361 (955)
62 KOG1320|consensus 95.9 0.036 7.8E-07 43.5 6.8 57 55-114 399-457 (473)
63 KOG4371|consensus 93.3 0.15 3.2E-06 43.6 4.5 84 32-119 1150-1233(1332)
64 PF12812 PDZ_1: PDZ-like domai 93.2 0.72 1.6E-05 27.2 6.2 46 55-103 31-76 (78)
65 KOG3834|consensus 88.6 1.1 2.3E-05 34.9 4.7 58 53-111 14-71 (462)
66 KOG2921|consensus 88.5 1.3 2.9E-05 34.1 5.2 47 53-101 219-265 (484)
67 KOG4371|consensus 85.6 1.8 3.9E-05 37.4 4.9 82 30-112 1246-1328(1332)
68 KOG3834|consensus 85.3 5.8 0.00012 31.0 7.1 84 25-111 73-165 (462)
69 COG0750 Predicted membrane-ass 83.3 5.3 0.00011 30.3 6.3 53 57-112 132-188 (375)
70 PF11874 DUF3394: Domain of un 80.4 4.2 9E-05 28.1 4.3 39 41-83 112-150 (183)
71 KOG1421|consensus 79.4 8.1 0.00017 32.3 6.2 48 53-104 861-908 (955)
72 KOG0792|consensus 74.4 1.7 3.7E-05 37.5 1.3 63 40-102 716-797 (1144)
73 KOG1703|consensus 66.5 2.5 5.4E-05 33.6 0.7 71 41-113 9-79 (479)
74 PRK09937 stationary phase/star 50.8 48 0.001 19.2 4.4 44 32-81 5-50 (74)
75 PRK15464 cold shock-like prote 43.2 47 0.001 19.0 3.2 44 32-81 8-53 (70)
76 PRK13810 orotate phosphoribosy 42.9 89 0.0019 21.6 5.2 36 71-106 117-152 (187)
77 COG5233 GRH1 Peripheral Golgi 42.5 18 0.00038 27.4 1.7 31 56-87 65-95 (417)
78 COG0461 PyrE Orotate phosphori 41.7 91 0.002 22.0 5.0 36 71-106 107-142 (201)
79 KOG0572|consensus 41.3 72 0.0016 25.0 4.8 43 73-115 353-396 (474)
80 PRK14998 cold shock-like prote 38.9 79 0.0017 18.2 4.3 44 32-81 5-50 (73)
81 KOG0708|consensus 37.9 47 0.001 25.5 3.4 46 81-126 2-47 (359)
82 COG4273 Uncharacterized conser 37.8 83 0.0018 20.5 4.0 48 57-110 49-98 (135)
83 PRK10943 cold shock-like prote 34.9 65 0.0014 18.3 3.0 44 32-81 7-52 (69)
84 PF00313 CSD: 'Cold-shock' DNA 34.0 25 0.00054 19.4 1.1 43 33-81 5-49 (66)
85 COG0034 PurF Glutamine phospho 33.9 1.3E+02 0.0027 24.2 5.1 42 73-114 345-387 (470)
86 COG1625 Fe-S oxidoreductase, r 32.7 44 0.00096 26.2 2.5 33 57-90 4-37 (414)
87 cd01433 Ribosomal_L16_L10e Rib 32.6 46 0.001 20.8 2.3 32 72-107 75-106 (112)
88 PRK15463 cold shock-like prote 31.6 80 0.0017 18.0 3.0 44 32-81 8-53 (70)
89 PRK10354 RNA chaperone/anti-te 31.1 1.1E+02 0.0023 17.4 4.5 44 32-81 8-53 (70)
90 PRK13812 orotate phosphoribosy 30.0 1.7E+02 0.0037 19.9 4.9 36 71-106 102-137 (176)
91 PRK09890 cold shock protein Cs 30.0 1.1E+02 0.0024 17.3 4.5 44 32-81 8-53 (70)
92 PRK13809 orotate phosphoribosy 29.6 1.7E+02 0.0038 20.5 5.0 35 72-106 114-148 (206)
93 TIGR01744 XPRTase xanthine pho 29.5 1.6E+02 0.0036 20.3 4.8 35 72-106 113-147 (191)
94 PRK05500 bifunctional orotidin 28.4 1.7E+02 0.0036 23.6 5.1 36 71-106 388-423 (477)
95 PRK06388 amidophosphoribosyltr 28.3 1E+02 0.0022 24.7 4.0 42 73-114 353-395 (474)
96 TIGR00336 pyrE orotate phospho 28.2 1.7E+02 0.0037 19.7 4.7 35 72-106 104-138 (173)
97 PRK06781 amidophosphoribosyltr 28.1 1.6E+02 0.0034 23.6 5.0 41 74-114 346-387 (471)
98 COG1278 CspC Cold shock protei 28.0 1.3E+02 0.0027 17.3 3.8 44 32-81 5-50 (67)
99 PRK09203 rplP 50S ribosomal pr 27.8 63 0.0014 21.2 2.4 30 71-105 95-124 (138)
100 PLN02293 adenine phosphoribosy 25.9 2.2E+02 0.0047 19.6 4.9 35 72-106 121-155 (187)
101 PRK09219 xanthine phosphoribos 25.0 1.9E+02 0.0041 20.0 4.5 35 72-106 113-147 (189)
102 PF04027 DUF371: Domain of unk 23.5 86 0.0019 20.5 2.3 37 75-111 28-64 (132)
103 PRK07631 amidophosphoribosyltr 22.5 1.8E+02 0.004 23.3 4.4 42 73-114 345-387 (475)
104 cd04458 CSP_CDS Cold-Shock Pro 22.2 1.4E+02 0.003 16.2 2.9 45 33-81 5-49 (65)
105 cd03701 IF2_IF5B_II IF2_IF5B_I 22.0 1.4E+02 0.003 18.1 3.0 11 71-81 25-35 (95)
106 TIGR02381 cspD cold shock doma 20.9 1.7E+02 0.0038 16.4 3.4 46 32-81 5-50 (68)
107 PRK12560 adenine phosphoribosy 20.4 3E+02 0.0064 18.9 5.0 35 72-106 110-144 (187)
108 TIGR01164 rplP_bact ribosomal 20.3 79 0.0017 20.4 1.7 28 71-103 94-121 (126)
No 1
>KOG3550|consensus
Probab=99.95 E-value=5.5e-27 Score=152.32 Aligned_cols=134 Identities=90% Similarity=1.266 Sum_probs=129.9
Q ss_pred CCCCCCCCChhhhHHHhhhhccCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEE
Q psy12579 3 LGSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82 (138)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~i 82 (138)
++++++++.+..++++.+|.+++.+.-||.|+|.+...++||.+.||++.+.++||+.+.|||.|++-|||+.||++++|
T Consensus 64 ~~s~eira~atakatvaafaaseghahprvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsv 143 (207)
T KOG3550|consen 64 DGSPEIRAAATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 143 (207)
T ss_pred CCChHHhhhhhhHHHHHHHHHhccCCCCceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEee
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCchHHHHHHHhhccccccCCCCC
Q psy12579 83 NGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPP 136 (138)
Q Consensus 83 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 136 (138)
||.++.+..|+.+..+++.+.+++.|.|++-|..+++++.++.+++++.++|+.
T Consensus 144 ngvsvege~hekavellkaa~gsvklvvrytpkvleeme~rfek~r~~rrrqq~ 197 (207)
T KOG3550|consen 144 NGVSVEGEHHEKAVELLKAAVGSVKLVVRYTPKVLEEMEARFEKQRSARRRQQS 197 (207)
T ss_pred cceeecchhhHHHHHHHHHhcCcEEEEEecChHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999988753
No 2
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.67 E-value=1.4e-15 Score=91.31 Aligned_cols=79 Identities=42% Similarity=0.753 Sum_probs=70.5
Q ss_pred EEEEec-CCCCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579 32 VVELPK-TDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109 (138)
Q Consensus 32 ~v~l~~-~~~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 109 (138)
+|++.+ ...+|||++.++.+.. .+++|..+.++|+|+++ ||+.||.|++|||.++.++++.++..+++.++..+.|+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~-gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~ 79 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERA-GLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT 79 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHH-TSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhc-ccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence 467777 6688999999876543 57999999999999999 59999999999999999999999999999998899888
Q ss_pred EE
Q psy12579 110 VR 111 (138)
Q Consensus 110 v~ 111 (138)
|+
T Consensus 80 V~ 81 (81)
T PF00595_consen 80 VQ 81 (81)
T ss_dssp EE
T ss_pred EC
Confidence 74
No 3
>KOG3209|consensus
Probab=99.50 E-value=1.4e-13 Score=108.22 Aligned_cols=89 Identities=36% Similarity=0.628 Sum_probs=80.6
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
++...-.+|+|.++..||||+|+||.++.-++||..+.++|||.++|.+++||+|++|||....+++|+.|..+|++-+.
T Consensus 894 ~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~ 973 (984)
T KOG3209|consen 894 SQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGR 973 (984)
T ss_pred cccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCe
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred eEEEEEEEC
Q psy12579 105 SVKLVVRYT 113 (138)
Q Consensus 105 ~v~l~v~r~ 113 (138)
.+.+.+++.
T Consensus 974 ~vll~Lr~g 982 (984)
T KOG3209|consen 974 RVLLLLRRG 982 (984)
T ss_pred EEEEEeccC
Confidence 777766653
No 4
>KOG3549|consensus
Probab=99.45 E-value=2.8e-13 Score=99.25 Aligned_cols=90 Identities=34% Similarity=0.542 Sum_probs=83.1
Q ss_pred cCCCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 24 SEGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
++..+..|+|++.+.. +|||++|.||.+..-+++|+++.++-.|+..|.|-+||-|++|||+.+..++|++++++++++
T Consensus 49 ~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA 128 (505)
T KOG3549|consen 49 PPMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA 128 (505)
T ss_pred CCccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc
Confidence 4455788999999977 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEC
Q psy12579 103 QRSVKLVVRYT 113 (138)
Q Consensus 103 ~~~v~l~v~r~ 113 (138)
|+.++++|...
T Consensus 129 GdeVtlTV~~l 139 (505)
T KOG3549|consen 129 GDEVTLTVKHL 139 (505)
T ss_pred CCEEEEEeHhh
Confidence 99999999643
No 5
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.43 E-value=6.4e-12 Score=75.18 Aligned_cols=79 Identities=53% Similarity=0.861 Sum_probs=67.3
Q ss_pred EEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579 31 RVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109 (138)
Q Consensus 31 ~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 109 (138)
+.+.+.+. ..+|||.+....+...+++|..+.++++|+.+ +|+.||+|++||+.++.++++.++...++.....+.++
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~-gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERG-GLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhC-CCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 45777776 57899999876433467999999999999997 99999999999999999889999999999876677666
Q ss_pred E
Q psy12579 110 V 110 (138)
Q Consensus 110 v 110 (138)
+
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 5
No 6
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.39 E-value=2.4e-11 Score=72.89 Aligned_cols=82 Identities=48% Similarity=0.743 Sum_probs=69.6
Q ss_pred EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110 (138)
Q Consensus 31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v 110 (138)
..+.+.+....|||.+........+++|..+.++++|+.+ +|++||.|++||+..+.++.+.+...++...+..+.+++
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~-gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i 81 (85)
T smart00228 3 RLVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKA-GLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTV 81 (85)
T ss_pred EEEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 4567777668899999875432268999999999999999 799999999999999999999888888888777888888
Q ss_pred EEC
Q psy12579 111 RYT 113 (138)
Q Consensus 111 ~r~ 113 (138)
.|+
T Consensus 82 ~r~ 84 (85)
T smart00228 82 LRG 84 (85)
T ss_pred EeC
Confidence 875
No 7
>KOG3209|consensus
Probab=99.30 E-value=2.2e-11 Score=96.11 Aligned_cols=85 Identities=39% Similarity=0.768 Sum_probs=77.9
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeE
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSV 106 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v 106 (138)
+...|.|.+...||||.|.||.+...+++|..+.+.|+|+.+|.|+.||.|++|+|++|.+.+|.+++.++..+ .+-|
T Consensus 649 k~ldV~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV 728 (984)
T KOG3209|consen 649 KELDVFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHV 728 (984)
T ss_pred cceeEEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCce
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999775 4568
Q ss_pred EEEEEEC
Q psy12579 107 KLVVRYT 113 (138)
Q Consensus 107 ~l~v~r~ 113 (138)
.|+|+|.
T Consensus 729 ~LtVRRk 735 (984)
T KOG3209|consen 729 NLTVRRK 735 (984)
T ss_pred EEEEeee
Confidence 8888876
No 8
>KOG3551|consensus
Probab=99.27 E-value=1.1e-11 Score=91.95 Aligned_cols=86 Identities=44% Similarity=0.686 Sum_probs=78.9
Q ss_pred EEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579 31 RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109 (138)
Q Consensus 31 ~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 109 (138)
|.|++.|.. +++|++|.||+++.-++.|+++.+|-+|++.+.|..||.|++|||.++.+.+|+++++.++.+|..+.+.
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~le 165 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLE 165 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeee
Confidence 778887755 8899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEECCch
Q psy12579 110 VRYTPKV 116 (138)
Q Consensus 110 v~r~~~~ 116 (138)
|++--+.
T Consensus 166 vKy~REv 172 (506)
T KOG3551|consen 166 VKYMREV 172 (506)
T ss_pred eeeehhc
Confidence 8765443
No 9
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.26 E-value=1.1e-10 Score=67.74 Aligned_cols=67 Identities=40% Similarity=0.682 Sum_probs=58.6
Q ss_pred CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-CeEEEEE
Q psy12579 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-RSVKLVV 110 (138)
Q Consensus 41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v 110 (138)
++||.+....+ .+++|..+.+++||+.+ +|++||+|++|||.++.++++.++..+++... ..+.|++
T Consensus 2 ~~G~~~~~~~~--~~~~V~~v~~~s~a~~~-gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE--GGVVVLSVEPGSPAERA-GLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC--CCEEEEEeCCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 58999987542 47999999999999997 99999999999999999999999999998864 6777765
No 10
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.09 E-value=2.6e-09 Score=64.12 Aligned_cols=72 Identities=29% Similarity=0.499 Sum_probs=56.7
Q ss_pred CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 116 (138)
Q Consensus 41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 116 (138)
.+|+.+..... ..+++|..|.++|||+.+ ||+.||.|++|||..+.+ ..+....+.. .+..+.+++.|+...
T Consensus 2 ~lGv~~~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 2 GLGVTVQNLSD-TGGVVVVSVIPGSPAAKA-GLQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp E-SEEEEECSC-SSSEEEEEESTTSHHHHT-TS-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred EECeEEEEccC-CCeEEEEEeCCCCcHHHC-CCCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 46888776432 357999999999999999 999999999999999944 5676777643 478999999998653
No 11
>KOG1892|consensus
Probab=99.04 E-value=1.8e-09 Score=87.83 Aligned_cols=98 Identities=30% Similarity=0.508 Sum_probs=83.9
Q ss_pred CCcEEEEEecCCCCcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
++..+|+|++. +|+|++|...+. ...|+||+.|.+|++|+.+|.|..||+++.|||+.+.+.+.+.+..++-+.|.
T Consensus 932 pei~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~ 1010 (1629)
T KOG1892|consen 932 PEIITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGN 1010 (1629)
T ss_pred CceEEEEEecc-CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCC
Confidence 45566788876 899999975432 24589999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCchHHHHHHHhhc
Q psy12579 105 SVKLVVRYTPKVLEEMEMRFDK 126 (138)
Q Consensus 105 ~v~l~v~r~~~~~~~~~~~~~~ 126 (138)
.|.|.|...+-.+..+...+..
T Consensus 1011 vV~leVaKqgAiyhGLatlL~q 1032 (1629)
T KOG1892|consen 1011 VVHLEVAKQGAIYHGLATLLGQ 1032 (1629)
T ss_pred eEEEehhhhhhHHHHHHHHhcC
Confidence 9999999888777776665543
No 12
>KOG3651|consensus
Probab=99.03 E-value=1.5e-09 Score=78.58 Aligned_cols=101 Identities=23% Similarity=0.447 Sum_probs=81.6
Q ss_pred cEEEEEecCCC-CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579 30 PRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108 (138)
Q Consensus 30 ~~~v~l~~~~~-~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l 108 (138)
+.+|++.++.. -+|++|.||...-..+||..|..++||++.|.++.||.|++|||+.+.+.+..++.++|....+.+.+
T Consensus 5 ~~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I 84 (429)
T KOG3651|consen 5 SETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI 84 (429)
T ss_pred cCcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence 45688888774 58999999876555689999999999999999999999999999999999999999999999888888
Q ss_pred EEE---ECCchHHHHHHHhhccccc
Q psy12579 109 VVR---YTPKVLEEMEMRFDKQRTA 130 (138)
Q Consensus 109 ~v~---r~~~~~~~~~~~~~~~~~~ 130 (138)
.+. -+|..-+.+..-+++.+|.
T Consensus 85 hyNKL~adp~qGktLDI~lKKvKHr 109 (429)
T KOG3651|consen 85 HYNKLEADPTQGKTLDILLKKVKHR 109 (429)
T ss_pred EehhcccCcccCccHHHHHHHHHHH
Confidence 774 3444444444444444443
No 13
>KOG3580|consensus
Probab=99.03 E-value=1.1e-09 Score=85.65 Aligned_cols=84 Identities=33% Similarity=0.584 Sum_probs=74.6
Q ss_pred CcEEEEEecCC-CCcCeEEeccCCCCC------CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 29 HPRVVELPKTD-EGLGFNVMGGKEQNS------PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 29 ~~~~v~l~~~~-~~~G~~l~~~~~~~~------~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
+..+++|.++. .|||+.|.||.+... -++|+.|.+||||+ |.|+.+|.|+.|||..+.+..|.-+++.|+.
T Consensus 8 EQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrk 85 (1027)
T KOG3580|consen 8 EQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRK 85 (1027)
T ss_pred hhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHh
Confidence 34679999987 689999999987643 38899999999999 6799999999999999999999999999999
Q ss_pred CCCeEEEEEEECC
Q psy12579 102 AQRSVKLVVRYTP 114 (138)
Q Consensus 102 ~~~~v~l~v~r~~ 114 (138)
++....++|+|.-
T Consensus 86 sgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 86 SGKVAAITVKRPR 98 (1027)
T ss_pred hccceeEEecccc
Confidence 9999999998764
No 14
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.01 E-value=4.7e-09 Score=63.13 Aligned_cols=70 Identities=27% Similarity=0.564 Sum_probs=59.1
Q ss_pred CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEEC
Q psy12579 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYT 113 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~ 113 (138)
.++|+.+... ..+++|..+.++++|+.+ +|++||+|++|||..+.++++.++..++.. .+..+.+++.|+
T Consensus 2 ~~lG~~~~~~---~~~~~V~~v~~~s~a~~~-gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYD---DGGLVITSVLPGSPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEc---CCeEEEEEecCCCCHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 3578887642 356999999999999998 999999999999999999877888888765 467889999887
No 15
>KOG3553|consensus
Probab=98.97 E-value=1.1e-09 Score=66.82 Aligned_cols=69 Identities=32% Similarity=0.578 Sum_probs=57.6
Q ss_pred cCeEEeccCCC----------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE
Q psy12579 42 LGFNVMGGKEQ----------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111 (138)
Q Consensus 42 ~G~~l~~~~~~----------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~ 111 (138)
+||.|.||-+. +.|+||..|.+||||+.+ ||+.+|.|+++||-.+.-++|+.+.+.++.. ..+.+.|.
T Consensus 37 ~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~A-GLrihDKIlQvNG~DfTMvTHd~Avk~i~k~-~vl~mLVa 114 (124)
T KOG3553|consen 37 LGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIA-GLRIHDKILQVNGWDFTMVTHDQAVKRITKE-EVLRMLVA 114 (124)
T ss_pred EEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhh-cceecceEEEecCceeEEEEhHHHHHHhhHh-HHHHHHHH
Confidence 79999887653 457999999999999999 9999999999999999889999999998763 23444443
Q ss_pred E
Q psy12579 112 Y 112 (138)
Q Consensus 112 r 112 (138)
|
T Consensus 115 R 115 (124)
T KOG3553|consen 115 R 115 (124)
T ss_pred h
Confidence 3
No 16
>KOG3571|consensus
Probab=98.87 E-value=1.2e-08 Score=78.23 Aligned_cols=86 Identities=30% Similarity=0.478 Sum_probs=71.1
Q ss_pred CCcEEEEEecCC-CCcCeEEeccC--CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGK--EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-- 102 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~--~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-- 102 (138)
....+|.|--.. ..||+++.|.. ..+.++||..+.+||+.+++|.+.+||.|++||.+++.+++.++|+..|+..
T Consensus 248 lnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~ 327 (626)
T KOG3571|consen 248 LNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVS 327 (626)
T ss_pred eeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhc
Confidence 355566665555 56999999843 2367899999999999999999999999999999999999999999999885
Q ss_pred -CCeEEEEEEEC
Q psy12579 103 -QRSVKLVVRYT 113 (138)
Q Consensus 103 -~~~v~l~v~r~ 113 (138)
...+.|+|...
T Consensus 328 ~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 328 RPGPIKLTVAKC 339 (626)
T ss_pred cCCCeEEEEeec
Confidence 45688888544
No 17
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.81 E-value=8.4e-08 Score=57.14 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=51.0
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~ 115 (138)
..|++|..|.++++|+.+ ||+.||.|++|||..+.+ ..++...+... +..+.+++.|+..
T Consensus 9 ~~Gv~V~~V~~~spa~~a-GL~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~v~r~g~ 70 (79)
T cd00991 9 VAGVVIVGVIVGSPAENA-VLHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVTVLPSTT 70 (79)
T ss_pred CCcEEEEEECCCChHHhc-CCCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEEEEECCE
Confidence 457999999999999998 999999999999999964 57777777653 6788999988764
No 18
>KOG3552|consensus
Probab=98.81 E-value=1e-08 Score=83.29 Aligned_cols=91 Identities=30% Similarity=0.532 Sum_probs=73.1
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l 108 (138)
++|.|.+.+.. .+||-+..| .+|+|..|.+|||+. |.|.+||+|++|||.++.+..++.++.+++.+...+.|
T Consensus 55 ~pr~vq~~r~~-~lGFgfvag----rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~l 127 (1298)
T KOG3552|consen 55 EPRQVQLQRNA-SLGFGFVAG----RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNL 127 (1298)
T ss_pred cchhhhhhccc-cccceeecC----CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcce
Confidence 47778887654 344444443 579999999999999 67999999999999999999999999999999999999
Q ss_pred EEEEC---CchHHHHHHHhhc
Q psy12579 109 VVRYT---PKVLEEMEMRFDK 126 (138)
Q Consensus 109 ~v~r~---~~~~~~~~~~~~~ 126 (138)
+|.++ |...+.+..+.++
T Consensus 128 tV~qPc~~p~pKStflSa~Kr 148 (1298)
T KOG3552|consen 128 TVCQPCVLPGPKSTFLSAGKR 148 (1298)
T ss_pred EEeccccCCCchhhhhhhhhh
Confidence 99884 5555555555443
No 19
>KOG3542|consensus
Probab=98.81 E-value=1.7e-08 Score=80.04 Aligned_cols=102 Identities=36% Similarity=0.601 Sum_probs=88.8
Q ss_pred CCCCCcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 25 EGHAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
....++|.|.|.+.. .++-|.+.||.+.+.++||..|.+|+.|++. |++.||+|++|||.+..+.+...+..++++.
T Consensus 531 aaKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~-GlKRgDqilEVNgQnfenis~~KA~eiLrnn 609 (1283)
T KOG3542|consen 531 AAKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAARE-GLKRGDQILEVNGQNFENISAKKAEEILRNN 609 (1283)
T ss_pred hhcccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHh-hhhhhhhhhhccccchhhhhHHHHHHHhcCC
Confidence 344688999998844 6799999999998899999999999999999 9999999999999999999999999998765
Q ss_pred CCeEEEEEEECCchHHHHHHHhhccc
Q psy12579 103 QRSVKLVVRYTPKVLEEMEMRFDKQR 128 (138)
Q Consensus 103 ~~~v~l~v~r~~~~~~~~~~~~~~~~ 128 (138)
-.+.|++..+-..++++.-++...+
T Consensus 610 -thLtltvKtNvfvfKEll~r~e~eK 634 (1283)
T KOG3542|consen 610 -THLTLTVKTNVFVFKELLGRIEHEK 634 (1283)
T ss_pred -ceEEEEEecceeeHHHHHhhhhhhc
Confidence 4678888888888888887776654
No 20
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.77 E-value=1.4e-07 Score=55.87 Aligned_cols=59 Identities=25% Similarity=0.509 Sum_probs=49.4
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 115 (138)
.+++|..+.++++|+.+ ||+.||.|++|||.++.+ +.++...+... +..+.+++.|++.
T Consensus 12 ~~~~V~~v~~~s~a~~~-gl~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 12 IEPVIGEVVPGSPAAKA-GLKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred cCcEEEeECCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECCE
Confidence 45899999999999998 999999999999999965 57777777664 5678888888753
No 21
>KOG3938|consensus
Probab=98.75 E-value=1.6e-08 Score=72.01 Aligned_cols=113 Identities=21% Similarity=0.371 Sum_probs=90.1
Q ss_pred CCCCChhhhHHHhhhhccCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCee
Q psy12579 7 DVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86 (138)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~ 86 (138)
++...-..+..+..|.+.+.....+.|++.+..+.||++|...- -...||..+.+||.-++...+++||.|-+|||.+
T Consensus 104 DM~~llgGqigleDfiFAHvkGq~kEv~v~KsedalGlTITDNG--~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ 181 (334)
T KOG3938|consen 104 DMKRLLGGQIGLEDFIFAHVKGQAKEVEVVKSEDALGLTITDNG--AGYAFIKRIKEGSVIDRIEAICVGDHIEAINGES 181 (334)
T ss_pred cHHHHhcCccChhhhhhhhhcCcceeEEEEecccccceEEeeCC--cceeeeEeecCCchhhhhhheeHHhHHHhhcCcc
Confidence 33333444556677888888889999999999999999998532 3458999999999998877899999999999999
Q ss_pred CCCCCHHHHHHHHHhC--CCeEEEEEEECCchHHHHH
Q psy12579 87 VEGEDHGKAVELLKQA--QRSVKLVVRYTPKVLEEME 121 (138)
Q Consensus 87 v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~~~~~~ 121 (138)
+.++.|.++..+++.. +..++|.+.-+...+....
T Consensus 182 ivG~RHYeVArmLKel~rge~ftlrLiePk~af~~~~ 218 (334)
T KOG3938|consen 182 IVGKRHYEVARMLKELPRGETFTLRLIEPKSAFDGIG 218 (334)
T ss_pred ccchhHHHHHHHHHhcccCCeeEEEeeccccccCccc
Confidence 9999999999999985 5667777765544444443
No 22
>KOG3606|consensus
Probab=98.75 E-value=4.1e-08 Score=70.18 Aligned_cols=83 Identities=33% Similarity=0.595 Sum_probs=69.6
Q ss_pred cEEEEEecCC--CCcCeEEeccC---------CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579 30 PRVVELPKTD--EGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98 (138)
Q Consensus 30 ~~~v~l~~~~--~~~G~~l~~~~---------~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~ 98 (138)
-|.|+|++-+ .++||-|+.|. +.-.|+||+.+.+||-|+..|-|.++|++++|||+.+.+.+.+++..|
T Consensus 159 HRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDM 238 (358)
T KOG3606|consen 159 HRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDM 238 (358)
T ss_pred hhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHH
Confidence 3457887743 68999998664 235679999999999999998899999999999999999999999999
Q ss_pred HHhCCCeEEEEEEE
Q psy12579 99 LKQAQRSVKLVVRY 112 (138)
Q Consensus 99 l~~~~~~v~l~v~r 112 (138)
+-.....+-++|+.
T Consensus 239 MvANshNLIiTVkP 252 (358)
T KOG3606|consen 239 MVANSHNLIITVKP 252 (358)
T ss_pred HhhcccceEEEecc
Confidence 87777777777764
No 23
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.74 E-value=1.4e-07 Score=55.97 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=50.5
Q ss_pred cCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 42 ~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
+|+.+... +.++.|..|.++++|+.+ ||+.||.|++||+..+.+ ..++...+ ..+..+.+++.|+..
T Consensus 3 ~G~~~~~~---~~~~~V~~V~~~s~a~~a-Gl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~ 69 (80)
T cd00990 3 LGLTLDKE---EGLGKVTFVRDDSPADKA-GLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDR 69 (80)
T ss_pred ccEEEEcc---CCcEEEEEECCCChHHHh-CCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCE
Confidence 57777532 446999999999999999 999999999999999965 23332222 246788888888753
No 24
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.66 E-value=2.5e-07 Score=70.65 Aligned_cols=75 Identities=31% Similarity=0.507 Sum_probs=60.5
Q ss_pred CCcCeEEeccCCCC---CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579 40 EGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK 115 (138)
Q Consensus 40 ~~~G~~l~~~~~~~---~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 115 (138)
.++|+.+....... .+++|..|.++|||+.+ ||+.||+|++|||.++.+++..++..+++. .+..+.+++.|++.
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~a-Gl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~ 163 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARA-GIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE 163 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 56888876432211 26899999999999999 999999999999999998888888777765 46788999988754
No 25
>KOG3580|consensus
Probab=98.64 E-value=8.9e-08 Score=75.15 Aligned_cols=91 Identities=24% Similarity=0.476 Sum_probs=74.7
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~ 105 (138)
+..+.|++.+ +...|+.+.||. +-|+||..|..|+||+.. ||+.||+|+.||.+++.++..++++..|-.. |..
T Consensus 406 P~tk~VrF~K-GdSvGLRLAGGN--DVGIFVaGvqegspA~~e-GlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEe 481 (1027)
T KOG3580|consen 406 PNTKMVRFKK-GDSVGLRLAGGN--DVGIFVAGVQEGSPAEQE-GLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEE 481 (1027)
T ss_pred CCceeEEeec-CCeeeeEeccCC--ceeEEEeecccCCchhhc-cccccceeEEeccccchhhhHHHHHHHHhcCCCCcE
Confidence 4556666654 567899999987 568999999999999999 9999999999999999999999999888764 567
Q ss_pred EEEEEEECCchHHHHHH
Q psy12579 106 VKLVVRYTPKVLEEMEM 122 (138)
Q Consensus 106 v~l~v~r~~~~~~~~~~ 122 (138)
+.+.-.+..+.|..+..
T Consensus 482 vtilaQ~k~Dvyr~iv~ 498 (1027)
T KOG3580|consen 482 VTILAQSKADVYRDIVA 498 (1027)
T ss_pred EeehhhhhhHHHHHHHh
Confidence 77776776666665544
No 26
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.62 E-value=5.7e-07 Score=54.38 Aligned_cols=60 Identities=30% Similarity=0.421 Sum_probs=49.9
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~ 115 (138)
..+++|..+.++++|..+ +|+.||.|++|||..+.+ ..++...+... +..+.+.+.|++.
T Consensus 23 ~~g~~V~~v~~~s~a~~~-gl~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 23 TKGVLVASVDPGSPAAKA-GLKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CCEEEEEEECCCCHHHHc-CCCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 347999999999999998 999999999999999965 45666666654 6788999988764
No 27
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.59 E-value=3.3e-07 Score=68.59 Aligned_cols=71 Identities=31% Similarity=0.487 Sum_probs=58.7
Q ss_pred CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECC
Q psy12579 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTP 114 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~ 114 (138)
.++|+.+... ..+++|..|.++|||+.+ ||+.||+|++|||.++.+++..++...+.. .+..+.+++.|.+
T Consensus 51 ~~lG~~~~~~---~~~~~V~~V~~~spA~~a-GL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 51 EGIGIQVGMD---DGEIVIVSPFEGSPAEKA-GIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred EEEEEEEEEE---CCEEEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 4578887642 346899999999999999 899999999999999998876777777655 5678999998875
No 28
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.49 E-value=2.2e-06 Score=50.80 Aligned_cols=58 Identities=24% Similarity=0.474 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
.|++|..|.++++|+. +|+.||.|++|||..+.+ .+++...+.. .+..+.+++.|++.
T Consensus 8 ~Gv~V~~V~~~s~A~~--gL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~ 67 (79)
T cd00986 8 HGVYVTSVVEGMPAAG--KLKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEK 67 (79)
T ss_pred cCEEEEEECCCCchhh--CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 4689999999999884 699999999999999964 5677777764 46788999988764
No 29
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.49 E-value=9.6e-07 Score=67.72 Aligned_cols=71 Identities=25% Similarity=0.428 Sum_probs=62.2
Q ss_pred CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEEC
Q psy12579 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYT 113 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~ 113 (138)
.++|..+.... ..++.|..+.+++||+++ |+++||+|+.|||.++.++..+++...++.. |..+.|++.|.
T Consensus 100 ~GiG~~i~~~~--~~~~~V~s~~~~~PA~ka-gi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 100 GGIGIELQMED--IGGVKVVSPIDGSPAAKA-GIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cceeEEEEEec--CCCcEEEecCCCChHHHc-CCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 67888887643 267899999999999999 6999999999999999999989899888875 67899999996
No 30
>KOG0609|consensus
Probab=98.44 E-value=1.7e-06 Score=67.18 Aligned_cols=87 Identities=32% Similarity=0.528 Sum_probs=74.7
Q ss_pred CCCCCcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 25 EGHAHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 25 ~~~~~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
......+.|++.+. +..+|.+++... ...++|..+..||.+++.|.|+.||.|.+|||+.+.+....++..+++.+.
T Consensus 118 e~~~~vriv~i~k~~~eplG~Tik~~e--~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~ 195 (542)
T KOG0609|consen 118 EPVEAVRIVRIVKNTGEPLGATIRVEE--DTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR 195 (542)
T ss_pred cccceeEEEEEeecCCCccceEEEecc--CCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC
Confidence 33355778888887 689999998753 236999999999999999999999999999999999999999999999998
Q ss_pred CeEEEEEEEC
Q psy12579 104 RSVKLVVRYT 113 (138)
Q Consensus 104 ~~v~l~v~r~ 113 (138)
+++++.+...
T Consensus 196 G~itfkiiP~ 205 (542)
T KOG0609|consen 196 GSITFKIIPS 205 (542)
T ss_pred CcEEEEEccc
Confidence 8888877544
No 31
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.44 E-value=1.2e-06 Score=70.82 Aligned_cols=71 Identities=27% Similarity=0.383 Sum_probs=58.2
Q ss_pred CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECC-----eeCCCCCHHHHHHHHHhC-CCeEEEEEEEC
Q psy12579 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG-----VSVEGEDHGKAVELLKQA-QRSVKLVVRYT 113 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing-----~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~ 113 (138)
.|+|+.+... +.+++|..|.+||||++++||++||.|++||+ ..+.++..+++..+|+.. |..|.|+|.+.
T Consensus 244 ~GIGa~l~~~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 244 EGIGAVLQMD---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred eEEEEEEEEe---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 5678887652 34589999999999999889999999999994 355678888999999874 67899999874
No 32
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.36 E-value=4.5e-06 Score=60.43 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=51.2
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 116 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 116 (138)
..|+.|..+.++++++++ ||+.||.|++|||.++.+ ..++..++.. .+..+.++|.|++..
T Consensus 190 ~~G~~v~~v~~~s~a~~a-GLr~GDvIv~ING~~i~~--~~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 190 LEGYRLNPGKDPSLFYKS-GLQDGDIAVALNGLDLRD--PEQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred eeEEEEEecCCCCHHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 357999999999999999 999999999999999966 4666666666 356899999998753
No 33
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.30 E-value=4.4e-06 Score=64.54 Aligned_cols=60 Identities=27% Similarity=0.450 Sum_probs=50.0
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 116 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 116 (138)
.+++|..|.++|||+++ ||+.||+|++|||..+.+ ..+....+.. .+..+.+++.|++..
T Consensus 257 ~Gv~V~~V~~~spA~~a-GL~~GDvI~~Vng~~i~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~ 318 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKA-GLKAGDVILSVNGKPISS--FADLRRAIGTLKPGKKVTLGILRKGKE 318 (428)
T ss_pred CceEEEEccCCCChHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 57999999999999999 999999999999999965 4566666554 467899999887643
No 34
>PRK10139 serine endoprotease; Provisional
Probab=98.23 E-value=8.6e-06 Score=63.44 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=51.5
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
.+++|..|.++++|+++ ||+.||.|++||+.++.+ +++....+......+.|++.|+..
T Consensus 390 ~Gv~V~~V~~~spA~~a-GL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQA-GLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCCChHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 46899999999999999 999999999999999955 578888887766788999999864
No 35
>PRK10942 serine endoprotease; Provisional
Probab=98.19 E-value=1.1e-05 Score=63.08 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
.+++|..|.++++|+++ ||+.||.|++||+.++.+ .+++..++...+..+.|+|.|...
T Consensus 408 ~gvvV~~V~~~S~A~~a-GL~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQI-GLKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCCChHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 47999999999999998 999999999999999955 588888888766788999999864
No 36
>PRK10139 serine endoprotease; Provisional
Probab=98.17 E-value=1.6e-05 Score=62.03 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=50.8
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
..|++|..|.++|||+++ ||+.||+|++|||..+.+ +.+....+.. .+..+.+++.|++.
T Consensus 289 ~~Gv~V~~V~~~SpA~~A-GL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~V~R~G~ 350 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKA-GVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGK 350 (455)
T ss_pred CCceEEEEECCCChHHHC-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 357999999999999999 999999999999999965 5777766654 47788999988764
No 37
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.15 E-value=1.6e-05 Score=61.40 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=51.5
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
.+++|..|.++++|+++ ||+.||.|++|||.++.+ ..++..++.. .+..+.+++.|+..
T Consensus 362 ~Gv~V~~V~~~SpA~~a-GL~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARA-GLQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred CceEEEEeCCCCHHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 57999999999999999 999999999999999955 5777888775 46789999999864
No 38
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.14 E-value=1.6e-05 Score=61.35 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=50.1
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 115 (138)
.++.|..|.+++||+.+ ||++||+|++|||.++.+ ..+....+.. .+..+.+++.|++.
T Consensus 203 ~g~vV~~V~~~SpA~~a-GL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~ 262 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKA-GLKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGE 262 (420)
T ss_pred cCcEEEEECCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCE
Confidence 36899999999999999 999999999999999955 5777777766 45678888888864
No 39
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.12 E-value=1.8e-05 Score=59.81 Aligned_cols=59 Identities=25% Similarity=0.343 Sum_probs=50.5
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
.+++|..|.+++||+.+ ||+.||.|++|||..+.+ ..+....+.. .+..+.+++.|++.
T Consensus 278 ~Gv~V~~V~~~spA~~a-GL~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g~ 338 (351)
T TIGR02038 278 RGIVITGVDPNGPAARA-GILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQGK 338 (351)
T ss_pred ccceEeecCCCChHHHC-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 57999999999999999 999999999999999955 5666666654 57889999999864
No 40
>KOG3605|consensus
Probab=98.11 E-value=5.2e-06 Score=65.80 Aligned_cols=87 Identities=32% Similarity=0.468 Sum_probs=68.5
Q ss_pred EEEEEec-CCCCcCeEEec-cCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC--e
Q psy12579 31 RVVELPK-TDEGLGFNVMG-GKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR--S 105 (138)
Q Consensus 31 ~~v~l~~-~~~~~G~~l~~-~~~~-~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~--~ 105 (138)
+.|.+.| .++.||..|.- |+.. -..|+|.....+|||+++|.|..||+|++|||..+.++.......+|++.++ .
T Consensus 647 KEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~ 726 (829)
T KOG3605|consen 647 KEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTA 726 (829)
T ss_pred ceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccce
Confidence 4466655 45788988753 2211 1237788999999999999999999999999999999999999999998754 5
Q ss_pred EEEEEEECCchH
Q psy12579 106 VKLVVRYTPKVL 117 (138)
Q Consensus 106 v~l~v~r~~~~~ 117 (138)
|.|+|.+.|++.
T Consensus 727 VkltiV~cpPV~ 738 (829)
T KOG3605|consen 727 VKLNIVSCPPVT 738 (829)
T ss_pred EEEEEecCCCce
Confidence 788888777653
No 41
>PRK10898 serine endoprotease; Provisional
Probab=98.05 E-value=2e-05 Score=59.51 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=49.4
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
.+++|..|.+++||+++ ||+.||.|++|||.++.+ ..+....+.. .+..+.+++.|+..
T Consensus 279 ~Gv~V~~V~~~spA~~a-GL~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g~ 339 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKA-GIQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK 339 (353)
T ss_pred CeEEEEEECCCChHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 57999999999999999 999999999999999955 4555555544 56789999998864
No 42
>KOG3605|consensus
Probab=98.05 E-value=6e-06 Score=65.48 Aligned_cols=73 Identities=33% Similarity=0.598 Sum_probs=61.8
Q ss_pred CCcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 28 AHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
+...+|.|+|.. ..|||++..| +|+.+..||.|++- |+++|.+|++|||..|.-..|+.++++|..+-+.
T Consensus 735 pPV~~V~I~RPd~kyQLGFSVQNG-------iICSLlRGGIAERG-GVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGE 806 (829)
T KOG3605|consen 735 PPVTTVLIRRPDLRYQLGFSVQNG-------IICSLLRGGIAERG-GVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGE 806 (829)
T ss_pred CCceEEEeecccchhhccceeeCc-------Eeehhhcccchhcc-CceeeeeEEEECCceEEeccHHHHHHHHHHhhhh
Confidence 456667777766 4699999863 78899999999996 9999999999999999999999999999887555
Q ss_pred EEE
Q psy12579 106 VKL 108 (138)
Q Consensus 106 v~l 108 (138)
+.|
T Consensus 807 IhM 809 (829)
T KOG3605|consen 807 IHM 809 (829)
T ss_pred hhh
Confidence 544
No 43
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.04 E-value=3.3e-05 Score=60.12 Aligned_cols=58 Identities=19% Similarity=0.405 Sum_probs=49.1
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579 55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK 115 (138)
Q Consensus 55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 115 (138)
++.|..|.++|||+.+ ||++||+|++|||.++.+ ..+....+.. .+..+.+++.|++.
T Consensus 222 ~~vV~~V~~~SpA~~A-GL~~GDvIl~Ing~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~ 280 (449)
T PRK10779 222 EPVLAEVQPNSAASKA-GLQAGDRIVKVDGQPLTQ--WQTFVTLVRDNPGKPLALEIERQGS 280 (449)
T ss_pred CcEEEeeCCCCHHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCEEEEEEEECCE
Confidence 4789999999999999 999999999999999954 5777777765 45678899888864
No 44
>PRK10942 serine endoprotease; Provisional
Probab=98.03 E-value=2.4e-05 Score=61.29 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=50.0
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
..|++|..|.+++||+++ ||+.||+|++|||..+.+ ..+....+.. .+..+.+++.|++.
T Consensus 310 ~~GvlV~~V~~~SpA~~A-GL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~G~ 371 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKA-GIKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGK 371 (473)
T ss_pred CCceEEEEECCCChHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCe
Confidence 357999999999999999 999999999999999965 4666666654 36788998888764
No 45
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.02 E-value=1.3e-05 Score=62.30 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=46.8
Q ss_pred eEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 56 v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
..|..|.++|||+++ ||+.||+|+++||..+.++ .+....+.. .+..+.+++.|++.
T Consensus 128 ~lV~~V~~~SpA~kA-GLk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk 186 (449)
T PRK10779 128 PVVGEIAPNSIAAQA-QIAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGS 186 (449)
T ss_pred ccccccCCCCHHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCc
Confidence 478999999999999 9999999999999999765 555444433 35679999999864
No 46
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.86 E-value=0.00017 Score=55.17 Aligned_cols=68 Identities=16% Similarity=0.367 Sum_probs=50.3
Q ss_pred CCcCeEEeccCCCCCCeEEEEEc--------CCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEE
Q psy12579 40 EGLGFNVMGGKEQNSPIYISRII--------PGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVV 110 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~~v~V~~v~--------~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v 110 (138)
..+|+.+. ..|+.|.... .++||+.+ +|+.||.|++|||.++.+ ..++..++... +..+.+++
T Consensus 96 ~~iGI~l~-----t~GVlVvg~~~v~~~~g~~~SPAa~A-GLq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~LtV 167 (402)
T TIGR02860 96 QSIGVKLN-----TKGVLVVGFSDIETEKGKIHSPGEEA-GIQIGDRILKINGEKIKN--MDDLANLINKAGGEKLTLTI 167 (402)
T ss_pred EEEEEEEe-----cCEEEEEEEEcccccCCCCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEEEEE
Confidence 34555543 2457765542 25889888 999999999999999955 57777777764 57789999
Q ss_pred EECCc
Q psy12579 111 RYTPK 115 (138)
Q Consensus 111 ~r~~~ 115 (138)
.|+..
T Consensus 168 ~R~Ge 172 (402)
T TIGR02860 168 ERGGK 172 (402)
T ss_pred EECCE
Confidence 98864
No 47
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.80 E-value=0.00013 Score=48.02 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=51.0
Q ss_pred CcEEEEEecC-----CCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCC-CCEEEEECCeeCCCCCHHHHHHHH
Q psy12579 29 HPRVVELPKT-----DEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKR-GDQLLSVNGVSVEGEDHGKAVELL 99 (138)
Q Consensus 29 ~~~~v~l~~~-----~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~-gD~i~~ing~~v~~~~~~~~~~~l 99 (138)
..|.|.+.-. .+.+|++++..... ..++.|..|.++|||+.+ ||.+ .|.|+.+++..+.+. ++....+
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~A-GL~p~~DyIig~~~~~l~~~--~~l~~~v 86 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKA-GLEPFFDYIIGIDGGLLDDE--DDLFELV 86 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHT-T--TTTEEEEEETTCE--ST--CHHHHHH
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHC-CccccccEEEEccceecCCH--HHHHHHH
Confidence 4455555431 34589998754322 446889999999999999 8998 699999999888753 5666666
Q ss_pred HhC-CCeEEEEEEE
Q psy12579 100 KQA-QRSVKLVVRY 112 (138)
Q Consensus 100 ~~~-~~~v~l~v~r 112 (138)
... +..+.|.|-.
T Consensus 87 ~~~~~~~l~L~Vyn 100 (138)
T PF04495_consen 87 EANENKPLQLYVYN 100 (138)
T ss_dssp HHTTTS-EEEEEEE
T ss_pred HHcCCCcEEEEEEE
Confidence 654 5677777754
No 48
>KOG0606|consensus
Probab=97.73 E-value=0.00014 Score=60.99 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=64.3
Q ss_pred EEEEecCCCCcCeEEeccCCC--CCC-----eEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQ--NSP-----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~--~~~-----v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
.|.++++..+|||++..-+-+ +.. ..|..|.+++||..+ +++.||.|..+||..+.++.|.++.+++-..+.
T Consensus 629 pI~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~a-gls~~DlIthvnge~v~gl~H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 629 PITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEA-GLSAGDLITHVNGEPVHGLVHTEVMELLLKSGN 707 (1205)
T ss_pred ceeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCcccc-CCCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence 378888899999987532211 122 358889999999998 999999999999999999999999999988887
Q ss_pred eEEEEEE
Q psy12579 105 SVKLVVR 111 (138)
Q Consensus 105 ~v~l~v~ 111 (138)
.+.+.+.
T Consensus 708 ~v~~~tt 714 (1205)
T KOG0606|consen 708 KVTLRTT 714 (1205)
T ss_pred eeEEEee
Confidence 7766654
No 49
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.61 E-value=0.00024 Score=54.90 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=46.5
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 114 (138)
.+.+|..|.++|||+++ |++.||.|+++||..+.+. .+..+.+....+.+.+.+.|+.
T Consensus 128 ~g~~V~~V~~~SpA~~A-GL~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~g 185 (420)
T TIGR00054 128 VGPVIELLDKNSIALEA-GIEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAER 185 (420)
T ss_pred CCceeeccCCCCHHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEec
Confidence 46789999999999999 9999999999999999654 6666555544467777777653
No 50
>KOG3532|consensus
Probab=97.59 E-value=0.00048 Score=55.50 Aligned_cols=81 Identities=19% Similarity=0.344 Sum_probs=60.6
Q ss_pred CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCchHHH
Q psy12579 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEE 119 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~ 119 (138)
..+|+.+.... ...|.|..|.++++|.++ .+++||++++|||.++ .+..++...++.....+...+.+.-...++
T Consensus 386 ~~ig~vf~~~~--~~~v~v~tv~~ns~a~k~-~~~~gdvlvai~~~pi--~s~~q~~~~~~s~~~~~~~l~~~~~~~~d~ 460 (1051)
T KOG3532|consen 386 SPIGLVFDKNT--NRAVKVCTVEDNSLADKA-AFKPGDVLVAINNVPI--RSERQATRFLQSTTGDLTVLVERSLDDIDE 460 (1051)
T ss_pred CceeEEEecCC--ceEEEEEEecCCChhhHh-cCCCcceEEEecCccc--hhHHHHHHHHHhcccceEEEEeecccchhh
Confidence 45676665422 345789999999999999 9999999999999999 446788888888776776666665555555
Q ss_pred HHHHhh
Q psy12579 120 MEMRFD 125 (138)
Q Consensus 120 ~~~~~~ 125 (138)
.+..++
T Consensus 461 ~~~~~~ 466 (1051)
T KOG3532|consen 461 EESKGK 466 (1051)
T ss_pred HHhccc
Confidence 555443
No 51
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.58 E-value=0.00069 Score=41.10 Aligned_cols=69 Identities=30% Similarity=0.462 Sum_probs=41.2
Q ss_pred cCeEEeccCCCCCCeEEEEEcCC--------Chhhhc-CCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEE
Q psy12579 42 LGFNVMGGKEQNSPIYISRIIPG--------GVADRH-GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVR 111 (138)
Q Consensus 42 ~G~~l~~~~~~~~~v~V~~v~~g--------s~a~~~-~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~ 111 (138)
||..+... ..++.|.++.+| ||.... -.++.||+|++|||.++... .....+|.+ ++..+.|++.
T Consensus 3 LGAd~~~~---~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~ 77 (88)
T PF14685_consen 3 LGADFSYD---NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVN 77 (88)
T ss_dssp -SEEEEEE---TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE
T ss_pred cceEEEEc---CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEe
Confidence 55555442 345788888776 454444 15669999999999999653 345566655 6788999998
Q ss_pred ECCc
Q psy12579 112 YTPK 115 (138)
Q Consensus 112 r~~~ 115 (138)
+.+.
T Consensus 78 ~~~~ 81 (88)
T PF14685_consen 78 RKPG 81 (88)
T ss_dssp -STT
T ss_pred cCCC
Confidence 8764
No 52
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.58 E-value=0.00021 Score=55.04 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=40.2
Q ss_pred EEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE-ECC
Q psy12579 58 ISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR-YTP 114 (138)
Q Consensus 58 V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~-r~~ 114 (138)
|..|.++|+|+.+ ||++||+|++|||..+.+ +.+....+. +..+.+++. +++
T Consensus 2 I~~V~pgSpAe~A-GLe~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~~rdG 54 (433)
T TIGR03279 2 ISAVLPGSIAEEL-GFEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVLDANG 54 (433)
T ss_pred cCCcCCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEEcCCC
Confidence 5678899999999 999999999999999965 466555553 356777775 443
No 53
>KOG1738|consensus
Probab=97.31 E-value=0.0005 Score=54.67 Aligned_cols=76 Identities=25% Similarity=0.405 Sum_probs=63.5
Q ss_pred cCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12579 37 KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114 (138)
Q Consensus 37 ~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 114 (138)
+.+.++|+-|.. ..++.++|..+.+++||.....|..||.+++||+..+.++.+.-++..+.....-+.+++...+
T Consensus 210 kp~eglg~~I~S--sydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp 285 (638)
T KOG1738|consen 210 SPSEGLGLYIDS--SYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRP 285 (638)
T ss_pred CcccCCceEEee--ecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccC
Confidence 345788988876 3366789999999999999989999999999999999999999988888887666777775443
No 54
>KOG3129|consensus
Probab=97.19 E-value=0.002 Score=44.85 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=43.8
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCC-HHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579 55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED-HGKAVELLKQ-AQRSVKLVVRYTPK 115 (138)
Q Consensus 55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~-~~~~~~~l~~-~~~~v~l~v~r~~~ 115 (138)
.++|..|.++|||+.+ ||+.||.|+.+.++.-.+.. .......... .+..+.+++.|.+.
T Consensus 140 Fa~V~sV~~~SPA~~a-Gl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~ 201 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEA-GLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQ 201 (231)
T ss_pred eEEEeecCCCChhhhh-CcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCC
Confidence 4789999999999999 99999999999887765543 2232222222 35678888877654
No 55
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0022 Score=48.36 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=48.9
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
..|++|..+.+++||+++ +++.||.|+++||..+.+. .+....+.. .+..+.+.+.|.++
T Consensus 269 ~~G~~V~~v~~~spa~~a-gi~~Gdii~~vng~~v~~~--~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKA-GIKAGDIITAVNGKPVASL--SDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred CCceEEEecCCCChHHHc-CCCCCCEEEEECCEEccCH--HHHHHHHhccCCCCEEEEEEEECCE
Confidence 456999999999999999 9999999999999999664 444444433 46789999998854
No 56
>KOG4407|consensus
Probab=96.86 E-value=0.002 Score=55.34 Aligned_cols=69 Identities=26% Similarity=0.352 Sum_probs=53.6
Q ss_pred eEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE-EECCchHHHHHHHhh
Q psy12579 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV-RYTPKVLEEMEMRFD 125 (138)
Q Consensus 56 v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v-~r~~~~~~~~~~~~~ 125 (138)
+||..|.+.++++.+ .|+.||.++.+|+.++.+..+.+++.++++....+.+.| -+.+++....++-+.
T Consensus 145 ~~~~eV~~n~~~~~a-~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~~dv~q~~~t~i~ 214 (1973)
T KOG4407|consen 145 IFIKEVQANGPAHYA-NLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKECDVLQMHYTSIA 214 (1973)
T ss_pred hhhhhhccCChhHHH-hhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccccCchHhhhccccc
Confidence 478888999999998 999999999999999999999999999988765555544 345566555554433
No 57
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.80 E-value=0.0042 Score=48.81 Aligned_cols=41 Identities=34% Similarity=0.632 Sum_probs=35.3
Q ss_pred CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCe
Q psy12579 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85 (138)
Q Consensus 41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~ 85 (138)
.+|+.+... .....|..|.++|||..+ ||.+||.|++|||.
T Consensus 452 ~LGl~v~~~---~g~~~i~~V~~~gPA~~A-Gl~~Gd~ivai~G~ 492 (558)
T COG3975 452 YLGLKVKSE---GGHEKITFVFPGGPAYKA-GLSPGDKIVAINGI 492 (558)
T ss_pred ccceEeccc---CCeeEEEecCCCChhHhc-cCCCccEEEEEcCc
Confidence 577777642 345789999999999999 99999999999999
No 58
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.80 E-value=0.004 Score=45.46 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=36.0
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCchH
Q psy12579 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKVL 117 (138)
Q Consensus 71 ~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~~ 117 (138)
.||+.||.+++|||.++.+. .++.+++.+. ...+.++|+|++...
T Consensus 223 ~GLq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~~ 269 (276)
T PRK09681 223 SGFKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGARH 269 (276)
T ss_pred cCCCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEEE
Confidence 39999999999999999764 5566666654 467999999998643
No 59
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=96.27 E-value=0.029 Score=40.11 Aligned_cols=70 Identities=24% Similarity=0.408 Sum_probs=48.1
Q ss_pred EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEE
Q psy12579 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKL 108 (138)
Q Consensus 31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l 108 (138)
+-..+.+++.-+|+.+..+++ ++.=... ||+.||..+++|+.++.+ -++...++... ...+.+
T Consensus 196 rltpv~r~eki~Gyr~~pgkd------------~slF~~s-glq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~ql 260 (275)
T COG3031 196 RLTPVIRNEKIEGYRFEPGKD------------GSLFYKS-GLQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQL 260 (275)
T ss_pred EeeeEeeCCceEEEEecCCCC------------cchhhhh-cCCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEE
Confidence 334445566677887776653 2222344 999999999999999955 45555555553 467899
Q ss_pred EEEECCc
Q psy12579 109 VVRYTPK 115 (138)
Q Consensus 109 ~v~r~~~ 115 (138)
+|.|++.
T Consensus 261 Tv~R~G~ 267 (275)
T COG3031 261 TVIRRGK 267 (275)
T ss_pred EEEecCc
Confidence 9999874
No 60
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.26 E-value=0.027 Score=41.77 Aligned_cols=57 Identities=16% Similarity=0.357 Sum_probs=47.2
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
|+|+..+..++++. +-|..||.|.+|||.++.+ .++...++.. .|+.+.+.++|...
T Consensus 131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~~ 189 (342)
T COG3480 131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHNE 189 (342)
T ss_pred eEEEEEccCCcchh--ceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEeccC
Confidence 58999999999988 4699999999999999955 5777777755 58999999997543
No 61
>KOG1421|consensus
Probab=96.14 E-value=0.016 Score=47.16 Aligned_cols=56 Identities=21% Similarity=0.487 Sum_probs=46.3
Q ss_pred eEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK 115 (138)
Q Consensus 56 v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 115 (138)
++|..|.++|++.+. |.+||.+++||+..+.+ ...+.+++.. .|..+.|++.|.+.
T Consensus 305 LvV~~vL~~gpa~k~--Le~GDillavN~t~l~d--f~~l~~iLDegvgk~l~LtI~Rggq 361 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK--LEPGDILLAVNSTCLND--FEALEQILDEGVGKNLELTIQRGGQ 361 (955)
T ss_pred EEEEEeccCCchhhc--cCCCcEEEEEcceehHH--HHHHHHHHhhccCceEEEEEEeCCE
Confidence 679999999999975 99999999999877743 4666677654 58899999999875
No 62
>KOG1320|consensus
Probab=95.92 E-value=0.036 Score=43.45 Aligned_cols=57 Identities=30% Similarity=0.542 Sum_probs=46.4
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--CeEEEEEEECC
Q psy12579 55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSVKLVVRYTP 114 (138)
Q Consensus 55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~--~~v~l~v~r~~ 114 (138)
++.|..|.+++++... ++..||+|.+|||..+.+. .++..+++.+. +.+.+..++..
T Consensus 399 ~v~is~Vlp~~~~~~~-~~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~~ 457 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGY-GLKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRSA 457 (473)
T ss_pred EEEEEEeccCCCcccc-cccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecCc
Confidence 4789999999999988 9999999999999999775 66778887764 46666555543
No 63
>KOG4371|consensus
Probab=93.31 E-value=0.15 Score=43.55 Aligned_cols=84 Identities=27% Similarity=0.449 Sum_probs=61.4
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~ 111 (138)
.+.+.+....+|..+..- ...+-|+...-.+.-..- .|.+||.+.-+||+-+.+.-+.++..+++..++.+.+-|.
T Consensus 1150 ~~~~~r~~~~l~~~~a~~---~~~~~~~~~~~~~~~~~p-d~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 (1332)
T KOG4371|consen 1150 DVELDRNEGSLGVQIASL---SGRVCIKQLTSEPAISHP-DIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQ 1225 (1332)
T ss_pred cccCCCCCCCCCceeccC---ccceehhhcccCCCCCCC-CcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEee
Confidence 344555566688777642 122344444433333333 7999999999999999999999999999999999999999
Q ss_pred ECCchHHH
Q psy12579 112 YTPKVLEE 119 (138)
Q Consensus 112 r~~~~~~~ 119 (138)
|.+..+..
T Consensus 1226 r~~~~~~d 1233 (1332)
T KOG4371|consen 1226 RPPPAYSD 1233 (1332)
T ss_pred cCCccccc
Confidence 99876553
No 64
>PF12812 PDZ_1: PDZ-like domain
Probab=93.15 E-value=0.72 Score=27.24 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=35.2
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
+.++.....|+++..- ++..|-.|.+||+.++.+ .++..+.++...
T Consensus 31 ~gv~v~~~~g~~~~~~-~i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~ip 76 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAG-GISKGFIITSVNGKPTPD--LDDFIKVVKKIP 76 (78)
T ss_pred CEEEEEecCCChhhhC-CCCCCeEEEeECCcCCcC--HHHHHHHHHhCC
Confidence 3556666677777754 699999999999999965 577788777654
No 65
>KOG3834|consensus
Probab=88.59 E-value=1.1 Score=34.94 Aligned_cols=58 Identities=24% Similarity=0.278 Sum_probs=42.8
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~ 111 (138)
..+..|.+|..+++++++|-.---|.|++|||..+.. ..+....+++..-..|.|++.
T Consensus 14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~ 71 (462)
T KOG3834|consen 14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVY 71 (462)
T ss_pred ceeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEE
Confidence 3457899999999999994445589999999999854 344555556665555777774
No 66
>KOG2921|consensus
Probab=88.53 E-value=1.3 Score=34.15 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=38.0
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
+.++.|..|...||+..-.||.+||.|.++||.++.+ ..++...+..
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~t 265 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLAT 265 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHh
Confidence 4468899999999988777999999999999999954 4666666654
No 67
>KOG4371|consensus
Probab=85.61 E-value=1.8 Score=37.41 Aligned_cols=82 Identities=29% Similarity=0.400 Sum_probs=60.8
Q ss_pred cEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579 30 PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108 (138)
Q Consensus 30 ~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l 108 (138)
-+.+.+.+.. .++|+.+.... ...++++..+...+.|.-.+.+++||.++..++.++.+.+-...+..++...+.+.+
T Consensus 1246 l~~~~~~~~p~~~~~~~~~~~~-~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~ 1324 (1332)
T KOG4371|consen 1246 LISVMLLKKPMATLGLSLAKRT-MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQI 1324 (1332)
T ss_pred hhhheeeecccccccccccccC-cCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhh
Confidence 3444444444 67888776532 256789988888877777789999999999999999998887777766666667766
Q ss_pred EEEE
Q psy12579 109 VVRY 112 (138)
Q Consensus 109 ~v~r 112 (138)
++.+
T Consensus 1325 ~~~~ 1328 (1332)
T KOG4371|consen 1325 TVTR 1328 (1332)
T ss_pred eehh
Confidence 6654
No 68
>KOG3834|consensus
Probab=85.34 E-value=5.8 Score=31.04 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=51.6
Q ss_pred CCCCCcEEEEEecCC-CC---cCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCC-CCCEEEEECCeeCCCCCHHHHH
Q psy12579 25 EGHAHPRVVELPKTD-EG---LGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLK-RGDQLLSVNGVSVEGEDHGKAV 96 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~-~~---~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~-~gD~i~~ing~~v~~~~~~~~~ 96 (138)
+.-.+.|.+.+...+ .+ ||.+|+-.... ..-+.|..|.+.+||+++ ||. -+|+|+-+-.... ...++.+
T Consensus 73 ~kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalA-gl~~~~DYivG~~~~~~--~~~eDl~ 149 (462)
T KOG3834|consen 73 SKTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALA-GLRPYTDYIVGIWDAVM--HEEEDLF 149 (462)
T ss_pred cccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhc-ccccccceEecchhhhc--cchHHHH
Confidence 333566666666543 34 78877643321 223568889999999999 666 8999998722222 2235555
Q ss_pred HHHHh-CCCeEEEEEE
Q psy12579 97 ELLKQ-AQRSVKLVVR 111 (138)
Q Consensus 97 ~~l~~-~~~~v~l~v~ 111 (138)
.+|.. .++.+.|.|.
T Consensus 150 ~lIeshe~kpLklyVY 165 (462)
T KOG3834|consen 150 TLIESHEGKPLKLYVY 165 (462)
T ss_pred HHHHhccCCCcceeEe
Confidence 55544 4566666553
No 69
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=83.29 E-value=5.3 Score=30.27 Aligned_cols=53 Identities=25% Similarity=0.398 Sum_probs=39.7
Q ss_pred EEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCe---EEEEEEE
Q psy12579 57 YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRS---VKLVVRY 112 (138)
Q Consensus 57 ~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~---v~l~v~r 112 (138)
.+..+...+++..+ ++..||.++++|+..+.++ .++...+.. .+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a-~l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALA-GLRPGDRIVAVDGEKVASW--DDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHc-CCCCCCEEEeECCEEccCH--HHHHHHHHhccCCcccceEEEEEe
Confidence 34468889999999 9999999999999999654 555555443 3334 6777777
No 70
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=80.44 E-value=4.2 Score=28.13 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=31.9
Q ss_pred CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEEC
Q psy12579 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVN 83 (138)
Q Consensus 41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~in 83 (138)
..|+++... +..+.|..+..||+|+++ ++.-+..|.++-
T Consensus 112 ~~GL~l~~e---~~~~~Vd~v~fgS~A~~~-g~d~d~~I~~v~ 150 (183)
T PF11874_consen 112 AAGLTLMEE---GGKVIVDEVEFGSPAEKA-GIDFDWEITEVE 150 (183)
T ss_pred hCCCEEEee---CCEEEEEecCCCCHHHHc-CCCCCcEEEEEE
Confidence 368887752 345899999999999999 999999998863
No 71
>KOG1421|consensus
Probab=79.40 E-value=8.1 Score=32.29 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=41.5
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
+.++|+.....||||.+ .|.....|.+|||+.+ .+.++.+.+++...+
T Consensus 861 p~gvyvt~rg~gspalq--~l~aa~fitavng~~t--~~lddf~~~~~~ipd 908 (955)
T KOG1421|consen 861 PEGVYVTSRGYGSPALQ--MLRAAHFITAVNGHDT--NTLDDFYHMLLEIPD 908 (955)
T ss_pred CCceEEeecccCChhHh--hcchheeEEEeccccc--CcHHHHHHHHhhCCC
Confidence 56899999999999997 6999999999999999 456888888887643
No 72
>KOG0792|consensus
Probab=74.38 E-value=1.7 Score=37.49 Aligned_cols=63 Identities=37% Similarity=0.654 Sum_probs=50.3
Q ss_pred CCcCeEEeccCCCC-----CCeEEEEEc-------------CCChhhhc-CCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579 40 EGLGFNVMGGKEQN-----SPIYISRII-------------PGGVADRH-GGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100 (138)
Q Consensus 40 ~~~G~~l~~~~~~~-----~~v~V~~v~-------------~gs~a~~~-~gl~~gD~i~~ing~~v~~~~~~~~~~~l~ 100 (138)
+.|||.+.|+.+.. -++.+..+. ++++++.. -.+..||+++.|||..+....++.++.+++
T Consensus 716 g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ir 795 (1144)
T KOG0792|consen 716 GRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLIR 795 (1144)
T ss_pred ccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHHh
Confidence 46999999887643 456667776 77777654 468889999999999999999999888887
Q ss_pred hC
Q psy12579 101 QA 102 (138)
Q Consensus 101 ~~ 102 (138)
..
T Consensus 796 s~ 797 (1144)
T KOG0792|consen 796 SP 797 (1144)
T ss_pred hh
Confidence 65
No 73
>KOG1703|consensus
Probab=66.53 E-value=2.5 Score=33.56 Aligned_cols=71 Identities=28% Similarity=0.468 Sum_probs=58.6
Q ss_pred CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEEC
Q psy12579 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 113 (138)
Q Consensus 41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 113 (138)
.|||.+.++ +...++.+..+.+++.+... .+..+|.+..+++..-..+.+.++....+..+..+.+.+.|.
T Consensus 9 ~~~~r~~~~-~~~~~l~~~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 79 (479)
T KOG1703|consen 9 PWGFRLQGG-DFLQPLRILRVTPGGKAADA-ELDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRS 79 (479)
T ss_pred Cceeeeccc-ccccccceeccCCCCccccc-cccccccccccccccccccccccccCcccccccccccccccc
Confidence 677776654 44556889999999999988 999999999999998888889888888877877888877664
No 74
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=50.80 E-value=48 Score=19.21 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=26.4
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEEE--EcCCChhhhcCCCCCCCEEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYISR--IIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~~--v~~gs~a~~~~gl~~gD~i~~ 81 (138)
+|.......+|||...... ...+|++. +...+ . ..|..|+.|.-
T Consensus 5 ~Vkwfn~~KGfGFI~~~~g--g~dVFvH~s~i~~~g---~-~~l~~G~~V~f 50 (74)
T PRK09937 5 TVKWFNNAKGFGFICPEGG--GEDIFAHYSTIQMDG---Y-RTLKAGQSVQF 50 (74)
T ss_pred EEEEEeCCCCeEEEeeCCC--CccEEEEEeeccccC---C-CCCCCCCEEEE
Confidence 4667777799999765422 23466553 33222 1 26888887764
No 75
>PRK15464 cold shock-like protein CspH; Provisional
Probab=43.16 E-value=47 Score=19.04 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=26.3
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEEE--EcCCChhhhcCCCCCCCEEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYISR--IIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~~--v~~gs~a~~~~gl~~gD~i~~ 81 (138)
+|.......||||...... ...+||+. +...+ .. .|..||.|.-
T Consensus 8 ~Vk~fn~~KGfGFI~~~~g--~~DvFvH~s~l~~~g---~~-~l~~G~~V~f 53 (70)
T PRK15464 8 IVKTFDRKSGKGFIIPSDG--RKEVQVHISAFTPRD---AE-VLIPGLRVEF 53 (70)
T ss_pred EEEEEECCCCeEEEccCCC--CccEEEEehhehhcC---CC-CCCCCCEEEE
Confidence 4666777899999655421 23466543 33222 12 5888887764
No 76
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=42.89 E-value=89 Score=21.57 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=32.0
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 71 ~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
+.+..||.++-|++.-..+-+...+.+++++.|..+
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V 152 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYI 152 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEE
Confidence 467899999999999999999999999999988654
No 77
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=42.53 E-value=18 Score=27.45 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=27.0
Q ss_pred eEEEEEcCCChhhhcCCCCCCCEEEEECCeeC
Q psy12579 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87 (138)
Q Consensus 56 v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v 87 (138)
+-+..|.+-+++..+ ++-.||+|+-+|+.++
T Consensus 65 l~~lrv~~~~~~e~~-~~~~~dyilg~n~Dp~ 95 (417)
T COG5233 65 LEVLRVNPESPAEKA-GMVVGDYILGINEDPL 95 (417)
T ss_pred hhheeccccChhHhh-ccccceeEEeecCCcH
Confidence 456778889999999 9999999999998765
No 78
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=41.67 E-value=91 Score=21.96 Aligned_cols=36 Identities=33% Similarity=0.488 Sum_probs=31.9
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 71 ~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
|+...|+.++-|+++...+.+..++...++..|..+
T Consensus 107 G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V 142 (201)
T COG0461 107 GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEV 142 (201)
T ss_pred ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeE
Confidence 466689999999999999999999999999998765
No 79
>KOG0572|consensus
Probab=41.27 E-value=72 Score=25.03 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=37.0
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-CeEEEEEEECCc
Q psy12579 73 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-RSVKLVVRYTPK 115 (138)
Q Consensus 73 l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~ 115 (138)
-..|-.|+-|++..+.+.+...+.++++.+| ..+.+.+.-+|-
T Consensus 353 ~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAsPpi 396 (474)
T KOG0572|consen 353 NFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPPI 396 (474)
T ss_pred hcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEecCCcc
Confidence 3458899999999999999999999999997 678998877664
No 80
>PRK14998 cold shock-like protein CspD; Provisional
Probab=38.87 E-value=79 Score=18.23 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=25.9
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEE--EEcCCChhhhcCCCCCCCEEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~--~v~~gs~a~~~~gl~~gD~i~~ 81 (138)
+|.......+|||...... ...+|++ .+...+ . ..+..|+.|.-
T Consensus 5 ~Vkwfn~~kGfGFI~~~~g--~~dVFvH~s~l~~~g---~-~~l~~G~~V~f 50 (73)
T PRK14998 5 TVKWFNNAKGFGFICPEGG--GEDIFAHYSTIQMDG---Y-RTLKAGQSVRF 50 (73)
T ss_pred EEEEEeCCCceEEEecCCC--CccEEEEeeeecccC---C-CCCCCCCEEEE
Confidence 4666667789999766422 2346654 333222 1 26888887764
No 81
>KOG0708|consensus
Probab=37.92 E-value=47 Score=25.55 Aligned_cols=46 Identities=30% Similarity=0.496 Sum_probs=37.4
Q ss_pred EECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCchHHHHHHHhhc
Q psy12579 81 SVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDK 126 (138)
Q Consensus 81 ~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~~~~~~ 126 (138)
.+|+....+.+|.++...++.+++++.+++...++.++..+..+..
T Consensus 2 ~~~~~~~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~~~~~e~~i~~ 47 (359)
T KOG0708|consen 2 SVNGVDGRNATHEDAAAALKTSGDSVYIRAQYRPEEYDKFELKIHD 47 (359)
T ss_pred cccccccccchHHHHHHHhhcCCCceEEEEEechhhhchhhcccCC
Confidence 3577888888999999999999999999999888776666555444
No 82
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=37.76 E-value=83 Score=20.50 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=35.2
Q ss_pred EEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe--EEEEE
Q psy12579 57 YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS--VKLVV 110 (138)
Q Consensus 57 ~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~--v~l~v 110 (138)
-+..|..|.++... .-+.|+.|+.++|.++ .-+-..+..+|-. +.+++
T Consensus 49 C~agvg~gv~~l~~-~arsgrrIlalDGCp~-----~Catk~l~~AGv~~D~~l~i 98 (135)
T COG4273 49 CTAGVGAGVPALVD-AARSGRRILALDGCPL-----RCATKCLAEAGVQADVHLTI 98 (135)
T ss_pred eeecccCCcHHHHH-HhhcCCceEEecCChH-----HHHHHHHHHhccceeEEEEe
Confidence 46677888888877 7899999999999777 5556666666644 34444
No 83
>PRK10943 cold shock-like protein CspC; Provisional
Probab=34.87 E-value=65 Score=18.27 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=25.3
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEEE--EcCCChhhhcCCCCCCCEEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYISR--IIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~~--v~~gs~a~~~~gl~~gD~i~~ 81 (138)
+|.......+|||-..... ...+|++. +...+ .. .|..||.|.-
T Consensus 7 ~Vk~f~~~kGfGFI~~~~g--~~dvFvH~s~l~~~g---~~-~l~~G~~V~f 52 (69)
T PRK10943 7 QVKWFNESKGFGFITPADG--SKDVFVHFSAIQGNG---FK-TLAEGQNVEF 52 (69)
T ss_pred EEEEEeCCCCcEEEecCCC--CeeEEEEhhHccccC---CC-CCCCCCEEEE
Confidence 4666667789999765421 22466543 32221 12 5788887764
No 84
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=34.00 E-value=25 Score=19.44 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=23.8
Q ss_pred EEEecCCCCcCeEEeccCCCCCCeEEEE--EcCCChhhhcCCCCCCCEEEE
Q psy12579 33 VELPKTDEGLGFNVMGGKEQNSPIYISR--IIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 33 v~l~~~~~~~G~~l~~~~~~~~~v~V~~--v~~gs~a~~~~gl~~gD~i~~ 81 (138)
|.......+|||...... ...+|++. +...+ .. .|..||.|.-
T Consensus 5 V~~~~~~kgyGFI~~~~~--~~diFfh~s~~~~~~---~~-~l~~G~~V~F 49 (66)
T PF00313_consen 5 VKWFDDEKGYGFITSDDG--GEDIFFHISDLSGNG---FR-SLKEGDRVEF 49 (66)
T ss_dssp EEEEETTTTEEEEEETTS--SSEEEEEGGGBCSSS---ST-S--TTSEEEE
T ss_pred EEEEECCCCceEEEEccc--ceeEEeccccccccc---cc-cCCCCCEEEE
Confidence 555666789999877643 22466653 22222 12 5788887753
No 85
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=33.86 E-value=1.3e+02 Score=24.17 Aligned_cols=42 Identities=21% Similarity=0.473 Sum_probs=36.2
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-CeEEEEEEECC
Q psy12579 73 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-RSVKLVVRYTP 114 (138)
Q Consensus 73 l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~ 114 (138)
.-.|-.|+-|++.-|.+.|...+.++++.+| ..+++.+..++
T Consensus 345 ~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~ 387 (470)
T COG0034 345 VVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPP 387 (470)
T ss_pred HhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecCCC
Confidence 3458999999999999999999999999987 67888887554
No 86
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=32.71 E-value=44 Score=26.19 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=26.2
Q ss_pred EEEEEcCCChhhhcCCCCCCCEEEEEC-CeeCCCC
Q psy12579 57 YISRIIPGGVADRHGGLKRGDQLLSVN-GVSVEGE 90 (138)
Q Consensus 57 ~V~~v~~gs~a~~~~gl~~gD~i~~in-g~~v~~~ 90 (138)
.|..+.+++.++.. |++.||.+..|| +..+.++
T Consensus 4 ~i~~v~~~~~~d~~-Gfe~~~~l~~Vn~~~~~~~c 37 (414)
T COG1625 4 KISKVGGISGADCD-GFEEGDYLLKVNPGFGCKDC 37 (414)
T ss_pred ceeeccCCCccccc-CccccceeeecCCCCCCCcC
Confidence 46677788888887 999999999999 7766554
No 87
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=32.61 E-value=46 Score=20.83 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=23.7
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579 72 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 107 (138)
Q Consensus 72 gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~ 107 (138)
.+.+|+.|+++.+.+. .+.+...++.+...+.
T Consensus 75 ~v~~G~iifEi~~~~~----~~~~~~alk~a~~Klp 106 (112)
T cd01433 75 RVKPGQILFEVRGVPE----EEVAKEALRRAAKKLP 106 (112)
T ss_pred EECCCCEEEEEeCcCc----HHHHHHHHHHhhccCC
Confidence 7888999999988775 4667777776655443
No 88
>PRK15463 cold shock-like protein CspF; Provisional
Probab=31.61 E-value=80 Score=18.00 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=26.1
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEEE--EcCCChhhhcCCCCCCCEEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYISR--IIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~~--v~~gs~a~~~~gl~~gD~i~~ 81 (138)
+|.......+|||...... ...+||+. +...+ . ..|..|+.|.-
T Consensus 8 ~Vk~fn~~kGfGFI~~~~g--~~DvFvH~sal~~~g---~-~~l~~G~~V~f 53 (70)
T PRK15463 8 IVKTFDGKSGKGLITPSDG--RKDVQVHISALNLRD---A-EELTTGLRVEF 53 (70)
T ss_pred EEEEEeCCCceEEEecCCC--CccEEEEehhhhhcC---C-CCCCCCCEEEE
Confidence 4666777789999766422 23466654 32221 1 26888887764
No 89
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=31.13 E-value=1.1e+02 Score=17.39 Aligned_cols=44 Identities=20% Similarity=0.420 Sum_probs=24.8
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEE--EEcCCChhhhcCCCCCCCEEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~--~v~~gs~a~~~~gl~~gD~i~~ 81 (138)
+|...-...+|||--.... ...+|++ .+...+ .. .|..||.|.-
T Consensus 8 ~Vk~f~~~kGfGFI~~~~g--~~dvfvH~s~l~~~g---~~-~l~~G~~V~f 53 (70)
T PRK10354 8 IVKWFNADKGFGFITPDDG--SKDVFVHFSAIQNDG---YK-SLDEGQKVSF 53 (70)
T ss_pred EEEEEeCCCCcEEEecCCC--CccEEEEEeeccccC---CC-CCCCCCEEEE
Confidence 3555666789999654321 2236644 343322 12 5888887764
No 90
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=30.02 E-value=1.7e+02 Score=19.86 Aligned_cols=36 Identities=28% Similarity=0.542 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 71 ~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
+.+..|+.++-|++.-..+-+...+..+++..|-.+
T Consensus 102 g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~v 137 (176)
T PRK13812 102 GRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATV 137 (176)
T ss_pred ecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeE
Confidence 467799999999999999999999999999988553
No 91
>PRK09890 cold shock protein CspG; Provisional
Probab=30.00 E-value=1.1e+02 Score=17.33 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=25.6
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEE--EEcCCChhhhcCCCCCCCEEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYIS--RIIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~--~v~~gs~a~~~~gl~~gD~i~~ 81 (138)
+|.......+|||-..... ...+|++ .+...+ .. .|..||.|.-
T Consensus 8 ~Vk~f~~~kGfGFI~~~~g--~~dvFvH~s~l~~~~---~~-~l~~G~~V~f 53 (70)
T PRK09890 8 LVKWFNADKGFGFITPDDG--SKDVFVHFTAIQSNE---FR-TLNENQKVEF 53 (70)
T ss_pred EEEEEECCCCcEEEecCCC--CceEEEEEeeeccCC---CC-CCCCCCEEEE
Confidence 3556667789999766422 2236644 343332 11 5788887765
No 92
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=29.62 E-value=1.7e+02 Score=20.48 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=30.8
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 72 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 72 gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
.+..|+.++-|++.-..+-+..++.+.+++.|..+
T Consensus 114 ~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~v 148 (206)
T PRK13809 114 LFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVV 148 (206)
T ss_pred ccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEE
Confidence 46789999999999999999999999999987554
No 93
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=29.51 E-value=1.6e+02 Score=20.30 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=31.4
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 72 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 72 gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
.+..|+.++-|++.-..+-+...+.++++++|..+
T Consensus 113 ~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~V 147 (191)
T TIGR01744 113 FLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKI 147 (191)
T ss_pred hCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEE
Confidence 46799999999999999999999999999998664
No 94
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=28.41 E-value=1.7e+02 Score=23.62 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=32.4
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 71 ~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
|.+..||.++-|+++-..+-+..++..+++..|..+
T Consensus 388 G~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V 423 (477)
T PRK05500 388 GNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNV 423 (477)
T ss_pred cCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEE
Confidence 468899999999999999999999999999987664
No 95
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=28.26 E-value=1e+02 Score=24.70 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=34.8
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-CeEEEEEEECC
Q psy12579 73 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-RSVKLVVRYTP 114 (138)
Q Consensus 73 l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~ 114 (138)
...|..|+-|++.-+.+.|...+.++++.+| ..+.+.+..+|
T Consensus 353 ~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sPp 395 (474)
T PRK06388 353 VISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPH 395 (474)
T ss_pred cccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 4468899999999999999999999999987 56777776554
No 96
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=28.21 E-value=1.7e+02 Score=19.65 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=30.9
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 72 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 72 gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
.+..|+.++-|++.--.+-+...+.+++++.|..+
T Consensus 104 ~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v 138 (173)
T TIGR00336 104 ELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQV 138 (173)
T ss_pred CCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeE
Confidence 57789999999999999999999999999987654
No 97
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=28.07 E-value=1.6e+02 Score=23.63 Aligned_cols=41 Identities=20% Similarity=0.420 Sum_probs=34.4
Q ss_pred CCCCEEEEECCeeCCCCCHHHHHHHHHhCC-CeEEEEEEECC
Q psy12579 74 KRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-RSVKLVVRYTP 114 (138)
Q Consensus 74 ~~gD~i~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~ 114 (138)
..|-.|+-|++.-+.+.|...+.++++.+| ..+.+.+..+|
T Consensus 346 i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sPp 387 (471)
T PRK06781 346 VEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPP 387 (471)
T ss_pred cCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCCC
Confidence 457889999999999999999999999987 56777776554
No 98
>COG1278 CspC Cold shock proteins [Transcription]
Probab=27.97 E-value=1.3e+02 Score=17.27 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=25.0
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEEE--EcCCChhhhcCCCCCCCEEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYISR--IIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~~--v~~gs~a~~~~gl~~gD~i~~ 81 (138)
+|...-...+|||.....- ...+||+. +...+- ..|..|+.+.-
T Consensus 5 tVKwfn~~KGfGFI~p~~G--~~DvFVH~Sai~~~g~----~~L~eGQ~V~f 50 (67)
T COG1278 5 TVKWFNATKGFGFITPEDG--GKDVFVHISAIQRAGF----RTLREGQKVEF 50 (67)
T ss_pred eEEEeeCCCcceEcCCCCC--CcCEEEEeeeeccCCC----cccCCCCEEEE
Confidence 4666767789999765422 23466553 433221 25777776653
No 99
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=27.85 E-value=63 Score=21.22 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=22.3
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 71 ~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
..+..|+.|+++.+ .+.+.+...++.+...
T Consensus 95 arVk~G~iifEi~~-----~~~~~a~~al~~a~~K 124 (138)
T PRK09203 95 AVVKPGRILFEIAG-----VSEELAREALRLAAAK 124 (138)
T ss_pred EEECCCCEEEEEeC-----CCHHHHHHHHHHHhcc
Confidence 37899999999988 3346777777776443
No 100
>PLN02293 adenine phosphoribosyltransferase
Probab=25.90 E-value=2.2e+02 Score=19.64 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=31.0
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 72 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 72 gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
.+..|+.++-|++.-..+-+...+.+++++.|..+
T Consensus 121 ~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~ 155 (187)
T PLN02293 121 AVEPGERALVIDDLIATGGTLCAAINLLERAGAEV 155 (187)
T ss_pred ccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEE
Confidence 57789999999999999999999999999988653
No 101
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=24.99 E-value=1.9e+02 Score=19.96 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=31.5
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 72 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 72 gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
.+..|+.++-|++.-..+-+...+.+++++.|..+
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~v 147 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKV 147 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEE
Confidence 57899999999999999999999999999998664
No 102
>PF04027 DUF371: Domain of unknown function (DUF371); InterPro: IPR007171 This is an archaeal family of unknown function.; PDB: 3CBN_A.
Probab=23.46 E-value=86 Score=20.54 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=14.7
Q ss_pred CCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE
Q psy12579 75 RGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111 (138)
Q Consensus 75 ~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~ 111 (138)
.||+|+.|+-.....--..+....++..+..+.+++.
T Consensus 28 rGDCIIgv~Adk~~~dl~~e~k~~l~~~~~~i~~~i~ 64 (132)
T PF04027_consen 28 RGDCIIGVSADKAAADLSEEFKEALRNDGAIITVTIE 64 (132)
T ss_dssp T-TTEEEBS-S--GGGS-HHHHHHHS----EEEEEEE
T ss_pred CCCEEEEEecCCChhhcCHHHHHHHhCCCCeEEEEEE
Confidence 4677777664333222234455556555555555554
No 103
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=22.52 E-value=1.8e+02 Score=23.32 Aligned_cols=42 Identities=21% Similarity=0.427 Sum_probs=35.1
Q ss_pred CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-CeEEEEEEECC
Q psy12579 73 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-RSVKLVVRYTP 114 (138)
Q Consensus 73 l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~ 114 (138)
...|..|+-|++.-+.+.|...+.++++.+| ..+.+.+..+|
T Consensus 345 ~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sPp 387 (475)
T PRK07631 345 VVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPP 387 (475)
T ss_pred ccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCCC
Confidence 4458899999999999999999999999987 56777776554
No 104
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=22.25 E-value=1.4e+02 Score=16.22 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=24.9
Q ss_pred EEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEE
Q psy12579 33 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 33 v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ 81 (138)
|.......+|||-..... ...+|++.-.-.... . ..+..||.+.-
T Consensus 5 Vk~~~~~kGfGFI~~~~~--g~diffh~~~~~~~~-~-~~~~~G~~V~f 49 (65)
T cd04458 5 VKWFDDEKGFGFITPDDG--GEDVFVHISALEGDG-F-RSLEEGDRVEF 49 (65)
T ss_pred EEEEECCCCeEEEecCCC--CcCEEEEhhHhhccC-C-CcCCCCCEEEE
Confidence 455556689999776532 234666543221110 1 26788887764
No 105
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=21.99 E-value=1.4e+02 Score=18.05 Aligned_cols=11 Identities=45% Similarity=0.936 Sum_probs=8.0
Q ss_pred CCCCCCCEEEE
Q psy12579 71 GGLKRGDQLLS 81 (138)
Q Consensus 71 ~gl~~gD~i~~ 81 (138)
|.|+.||.|+.
T Consensus 25 GtL~~Gd~iv~ 35 (95)
T cd03701 25 GTLKKGDVIVA 35 (95)
T ss_pred CeEecCCEEEE
Confidence 46777777775
No 106
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=20.85 E-value=1.7e+02 Score=16.37 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=25.3
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ 81 (138)
+|.......+|||-..... ...+|++.-.-.... . ..|..|+.|.-
T Consensus 5 ~Vk~f~~~kGfGFI~~~~g--~~dvfvH~s~~~~~g-~-~~l~~G~~V~f 50 (68)
T TIGR02381 5 IVKWFNNAKGFGFICPEGV--DGDIFAHYSTIQMDG-Y-RTLKAGQKVQF 50 (68)
T ss_pred EEEEEeCCCCeEEEecCCC--CccEEEEHHHhhhcC-C-CCCCCCCEEEE
Confidence 4666667789999766421 234666542111000 1 15788887764
No 107
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=20.39 E-value=3e+02 Score=18.88 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=31.0
Q ss_pred CCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 72 GLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 72 gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
++..|+.++-|++.-..+-+...+.+++++.|..+
T Consensus 110 ~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~v 144 (187)
T PRK12560 110 GIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIV 144 (187)
T ss_pred CCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEE
Confidence 57789999999999999999999999999988654
No 108
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=20.33 E-value=79 Score=20.39 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=20.5
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 71 ~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
..+..|+.|+++.+ .+.+.+...++.+.
T Consensus 94 arV~~G~ilfEi~~-----~~~~~a~~al~~a~ 121 (126)
T TIGR01164 94 AVVKPGKILFEIAG-----VPEEVAREAFRLAA 121 (126)
T ss_pred EEECCCCEEEEEeC-----CCHHHHHHHHHHHH
Confidence 37889999999988 33466677776654
Done!