Query psy12579
Match_columns 138
No_of_seqs 157 out of 1479
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 22:56:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkr_A LIN-7 homolog B; LIN-7B 99.8 1.3E-17 4.5E-22 101.7 12.0 89 27-115 3-91 (93)
2 3i4w_A Disks large homolog 4; 99.8 3E-17 1E-21 102.1 12.5 96 24-121 6-102 (104)
3 1i16_A Interleukin 16, LCF; cy 99.7 8.6E-18 2.9E-22 108.7 9.7 91 24-114 24-118 (130)
4 1r6j_A Syntenin 1; PDZ, membra 99.7 6.2E-17 2.1E-21 96.6 12.3 78 27-112 2-80 (82)
5 2iwo_A Multiple PDZ domain pro 99.7 1.2E-17 4E-22 106.7 9.7 94 22-115 17-114 (120)
6 1uhp_A Hypothetical protein KI 99.7 9.8E-17 3.4E-21 100.3 13.2 90 26-115 5-102 (107)
7 1qav_A Alpha-1 syntrophin (res 99.7 6.2E-17 2.1E-21 98.2 11.8 86 28-113 3-89 (90)
8 2he4_A Na(+)/H(+) exchange reg 99.7 7.3E-17 2.5E-21 97.9 11.9 87 27-115 2-88 (90)
9 3gge_A PDZ domain-containing p 99.7 8.3E-17 2.9E-21 98.1 11.7 86 28-115 4-91 (95)
10 2jik_A Synaptojanin-2 binding 99.7 1.1E-16 3.9E-21 99.0 11.8 87 28-115 6-98 (101)
11 2q9v_A Membrane-associated gua 99.7 6.7E-17 2.3E-21 98.0 10.4 84 29-113 2-88 (90)
12 2dc2_A GOPC, golgi associated 99.7 1.1E-16 3.9E-21 99.5 11.2 90 26-115 6-96 (103)
13 1uep_A Membrane associated gua 99.7 5.2E-17 1.8E-21 101.0 9.6 91 24-114 4-96 (103)
14 2v90_A PDZ domain-containing p 99.7 1.8E-16 6.3E-21 97.2 11.5 87 28-115 2-90 (96)
15 1wi2_A Riken cDNA 2700099C19; 99.7 3.5E-16 1.2E-20 97.4 12.4 89 25-115 11-100 (104)
16 2f5y_A Regulator of G-protein 99.7 3E-16 1E-20 95.3 11.8 85 29-118 3-87 (91)
17 2i1n_A Discs, large homolog 3; 99.7 3.3E-16 1.1E-20 97.1 12.0 87 28-115 3-95 (102)
18 2fne_A Multiple PDZ domain pro 99.7 1E-16 3.5E-21 101.9 9.9 89 27-115 23-114 (117)
19 1g9o_A NHE-RF; PDZ domain, com 99.7 4.8E-16 1.7E-20 94.3 12.4 84 28-113 2-85 (91)
20 2r4h_A Membrane-associated gua 99.7 2.9E-16 1E-20 99.0 11.8 92 22-114 17-109 (112)
21 1n7e_A AMPA receptor interacti 99.7 5.7E-16 1.9E-20 95.2 12.8 87 28-115 4-91 (97)
22 3qe1_A Sorting nexin-27, G pro 99.7 4.7E-16 1.6E-20 97.2 12.5 89 26-115 3-103 (107)
23 2fe5_A Presynaptic protein SAP 99.7 5.5E-16 1.9E-20 94.6 12.5 85 29-114 3-93 (94)
24 2ego_A General receptor for ph 99.7 4E-16 1.4E-20 95.7 11.9 86 27-113 2-95 (96)
25 1wha_A KIAA0147 protein, scrib 99.7 2.8E-16 9.6E-21 97.9 11.3 89 26-115 4-99 (105)
26 2uzc_A Human pdlim5, PDZ and L 99.7 3E-16 1E-20 94.7 11.0 84 29-114 3-86 (88)
27 2d92_A INAD-like protein; PDZ 99.7 2E-16 6.9E-21 99.1 10.6 88 28-115 14-106 (108)
28 3l4f_D SH3 and multiple ankyri 99.7 5.1E-16 1.8E-20 100.6 12.7 94 22-116 20-126 (132)
29 2awx_A Synapse associated prot 99.7 4.8E-16 1.6E-20 96.9 11.9 88 29-116 3-95 (105)
30 4e34_A Golgi-associated PDZ an 99.7 4.4E-16 1.5E-20 93.8 11.4 84 29-112 2-86 (87)
31 2byg_A Channel associated prot 99.7 1.9E-16 6.4E-21 100.7 10.1 91 25-115 20-115 (117)
32 1ueq_A Membrane associated gua 99.7 1E-15 3.5E-20 98.0 13.5 86 28-114 18-106 (123)
33 2opg_A Multiple PDZ domain pro 99.7 5.8E-16 2E-20 95.2 11.8 87 28-115 3-91 (98)
34 1d5g_A Human phosphatase HPTP1 99.7 1.2E-15 4.3E-20 93.4 13.1 88 27-115 3-94 (96)
35 3b76_A E3 ubiquitin-protein li 99.7 3.2E-16 1.1E-20 99.8 10.7 91 24-114 19-113 (118)
36 2vsp_A PDZ domain-containing p 99.7 9.4E-17 3.2E-21 97.6 7.9 86 28-115 2-87 (91)
37 2d90_A PDZ domain containing p 99.7 4.6E-16 1.6E-20 96.4 11.1 88 25-114 2-89 (102)
38 2i04_A Membrane-associated gua 99.7 8.8E-16 3E-20 92.0 12.0 81 31-112 2-85 (85)
39 3r68_A Na(+)/H(+) exchange reg 99.7 5.5E-16 1.9E-20 94.8 11.2 86 27-114 3-88 (95)
40 2ehr_A INAD-like protein; PDZ 99.7 4.8E-16 1.6E-20 98.6 11.3 92 24-115 10-111 (117)
41 2djt_A Unnamed protein product 99.7 5.6E-16 1.9E-20 96.3 11.3 91 24-115 6-99 (104)
42 1ihj_A INAD; intermolecular di 99.7 7.9E-16 2.7E-20 94.6 11.7 85 29-114 5-97 (98)
43 1m5z_A GRIP, AMPA receptor int 99.7 1.9E-15 6.4E-20 91.7 13.1 86 27-114 4-91 (91)
44 2eno_A Synaptojanin-2-binding 99.7 6.5E-16 2.2E-20 98.5 11.5 88 28-115 16-108 (120)
45 2daz_A INAD-like protein; PDZ 99.7 2.4E-15 8.1E-20 96.4 14.1 91 27-117 23-114 (124)
46 1ufx_A KIAA1526 protein; PDZ d 99.7 6.1E-16 2.1E-20 96.2 10.9 88 27-114 4-97 (103)
47 1tp5_A Presynaptic density pro 99.7 4.4E-16 1.5E-20 99.0 10.5 97 23-121 8-105 (119)
48 2jil_A GRIP1 protein, glutamat 99.7 6E-16 2.1E-20 95.0 10.8 86 29-115 3-93 (97)
49 3o46_A Maguk P55 subfamily mem 99.7 1.2E-15 4.1E-20 93.0 11.9 85 29-114 4-88 (93)
50 1rgw_A ZAsp protein; PDZ, cyph 99.7 5.9E-16 2E-20 92.8 10.3 82 31-114 3-84 (85)
51 2eeg_A PDZ and LIM domain prot 99.7 6.6E-16 2.3E-20 94.4 10.7 86 28-115 7-92 (94)
52 2kv8_A RGS12, regulator of G-p 99.7 1.4E-16 4.7E-21 95.2 7.5 82 28-114 1-82 (83)
53 2dlu_A INAD-like protein; PDZ 99.7 7.4E-16 2.5E-20 96.9 11.2 88 25-115 11-99 (111)
54 1um1_A KIAA1849 protein, RSGI 99.7 2.6E-15 9.1E-20 94.2 13.4 90 26-116 5-98 (110)
55 2dls_A PDZ-rhogef, RHO guanine 99.7 1.9E-15 6.4E-20 92.2 12.3 85 25-115 4-88 (93)
56 3hpk_A Protein interacting wit 99.7 2.8E-15 9.6E-20 96.1 13.5 89 28-116 18-107 (125)
57 1wi4_A Synip, syntaxin binding 99.7 7.8E-16 2.7E-20 96.6 10.6 89 25-114 11-105 (109)
58 1kwa_A Hcask/LIN-2 protein; PD 99.7 8.9E-16 3E-20 92.8 10.4 83 30-114 2-85 (88)
59 1ujd_A KIAA0559 protein; PDZ d 99.7 6.7E-16 2.3E-20 98.0 10.2 89 28-116 11-111 (117)
60 1q7x_A PDZ2B domain of PTP-BAS 99.7 1.2E-15 4.1E-20 95.5 10.8 92 24-115 4-103 (108)
61 3axa_A Afadin, nectin-3, prote 99.7 1.2E-15 4.2E-20 95.1 10.8 91 25-116 7-100 (106)
62 2o2t_A Multiple PDZ domain pro 99.7 5E-16 1.7E-20 98.5 9.1 92 24-116 15-112 (117)
63 2q3g_A PDZ and LIM domain prot 99.7 1E-15 3.5E-20 92.6 9.8 84 30-115 4-87 (89)
64 1wf8_A Neurabin-I; PDZ domain, 99.7 1E-15 3.6E-20 95.6 10.1 91 25-115 5-101 (107)
65 1um7_A Synapse-associated prot 99.7 4.4E-16 1.5E-20 98.1 8.4 95 26-122 12-107 (113)
66 2cs5_A Tyrosine-protein phosph 99.7 7.3E-16 2.5E-20 98.1 9.5 87 28-114 14-106 (119)
67 2pa1_A PDZ and LIM domain prot 99.7 2.2E-15 7.6E-20 90.7 11.1 77 37-114 9-85 (87)
68 3nfk_A Tyrosine-protein phosph 99.7 1.3E-15 4.6E-20 95.0 10.2 85 28-113 16-107 (107)
69 2eei_A PDZ domain-containing p 99.7 9.2E-16 3.2E-20 95.6 9.4 87 26-114 5-91 (106)
70 2qg1_A Multiple PDZ domain pro 99.7 4.1E-15 1.4E-19 90.4 12.1 85 28-114 3-89 (92)
71 2yt7_A Amyloid beta A4 precurs 99.7 4.4E-15 1.5E-19 91.9 12.4 92 24-115 4-100 (101)
72 1wfg_A Regulating synaptic mem 99.7 1.3E-15 4.5E-20 98.6 10.3 106 9-114 7-127 (131)
73 2kpk_A Membrane-associated gua 99.7 1.9E-15 6.6E-20 97.5 11.0 87 28-114 17-105 (129)
74 2db5_A INAD-like protein; PDZ 99.6 1.6E-15 5.4E-20 97.7 10.3 91 25-115 21-116 (128)
75 2vwr_A Ligand of NUMB protein 99.6 6.2E-15 2.1E-19 90.1 12.3 85 29-115 3-90 (95)
76 3cbz_A Dishevelled-2; PDZ doma 99.6 1.6E-15 5.4E-20 95.0 9.7 87 28-114 4-96 (108)
77 3egg_C Spinophilin; PP1, serin 99.6 3.7E-15 1.3E-19 100.4 12.1 89 25-113 76-170 (170)
78 1v62_A KIAA1719 protein; struc 99.6 3.7E-15 1.3E-19 94.6 11.5 88 27-114 13-102 (117)
79 4amh_A Disks large homolog 1; 99.6 3.2E-15 1.1E-19 93.3 11.0 81 35-115 8-93 (106)
80 2pkt_A PDZ and LIM domain prot 99.6 3.9E-15 1.3E-19 90.3 11.0 84 30-115 4-87 (91)
81 2jre_A C60-1 PDZ domain peptid 99.6 4E-15 1.4E-19 93.0 11.3 90 25-115 8-105 (108)
82 1x5q_A LAP4 protein; PDZ domai 99.6 3.7E-15 1.3E-19 93.5 11.1 88 28-116 14-107 (110)
83 2w4f_A Protein LAP4; structura 99.6 7.5E-15 2.5E-19 90.0 12.1 86 29-115 3-94 (97)
84 1uew_A Membrane associated gua 99.6 7.8E-15 2.7E-19 92.6 12.5 90 25-115 6-104 (114)
85 1uju_A Scribble; PDZ domain, c 99.6 5.8E-16 2E-20 97.4 7.0 89 25-114 5-104 (111)
86 1z87_A Alpha-1-syntrophin; pro 99.6 1.1E-15 3.8E-20 109.3 9.2 89 28-116 76-165 (263)
87 1mfg_A ERB-B2 interacting prot 99.6 1.1E-14 3.9E-19 88.9 12.4 82 30-114 4-93 (95)
88 2dm8_A INAD-like protein; PDZ 99.6 1.5E-15 5.1E-20 96.1 8.6 91 25-116 13-105 (116)
89 1va8_A Maguk P55 subfamily mem 99.6 3.5E-15 1.2E-19 94.1 10.2 84 28-115 24-109 (113)
90 1wfv_A Membrane associated gua 99.6 6.5E-16 2.2E-20 95.8 6.6 90 25-115 7-97 (103)
91 1nf3_C PAR-6B; semi-CRIB motif 99.6 4.4E-15 1.5E-19 95.7 10.5 90 25-115 25-126 (128)
92 2eeh_A PDZ domain-containing p 99.6 1E-14 3.5E-19 90.0 11.7 89 25-115 6-95 (100)
93 1q3o_A Shank1; PDZ, GKAP, pept 99.6 1.2E-14 4E-19 91.1 12.1 86 28-114 6-104 (109)
94 2jxo_A Ezrin-radixin-moesin-bi 99.6 6.5E-15 2.2E-19 90.5 10.7 88 25-114 5-93 (98)
95 2csj_A TJP2 protein; PDZ domai 99.6 4.1E-15 1.4E-19 94.3 10.0 85 28-114 13-104 (117)
96 2g5m_B Neurabin-2; spinophilin 99.6 3.4E-15 1.2E-19 94.1 9.5 89 28-116 3-97 (113)
97 1wf7_A Enigma homologue protei 99.6 2.1E-15 7.1E-20 93.6 8.3 85 29-115 5-89 (103)
98 3k1r_A Harmonin; protein-prote 99.6 1E-14 3.5E-19 100.0 12.6 91 23-115 78-169 (192)
99 2gzv_A PRKCA-binding protein; 99.6 2.2E-14 7.6E-19 90.6 13.0 87 26-113 21-109 (114)
100 2h2b_A Tight junction protein 99.6 1.7E-14 5.9E-19 89.9 12.1 86 28-115 6-98 (107)
101 3ngh_A PDZ domain-containing p 99.6 1.1E-14 3.7E-19 90.7 11.1 84 30-115 2-86 (106)
102 2vsv_A Rhophilin-2; scaffold p 99.6 1E-14 3.4E-19 91.5 10.9 82 28-114 22-104 (109)
103 2koj_A Partitioning defective 99.6 2.2E-14 7.4E-19 90.1 12.3 90 25-115 7-102 (111)
104 1v6b_A Harmonin isoform A1; st 99.6 1E-14 3.4E-19 92.7 10.8 85 29-114 18-107 (118)
105 3gsl_A Disks large homolog 4; 99.6 1.4E-14 4.8E-19 98.9 12.0 88 27-114 3-95 (196)
106 3bpu_A Membrane-associated gua 99.6 1.6E-14 5.5E-19 87.0 10.7 82 29-114 3-86 (88)
107 2edp_A Fragment, shroom family 99.6 4.6E-15 1.6E-19 91.6 8.3 90 25-115 5-95 (100)
108 2ejy_A 55 kDa erythrocyte memb 99.6 1.8E-14 6E-19 88.6 10.8 84 28-113 11-95 (97)
109 2yuy_A RHO GTPase activating p 99.6 1E-15 3.5E-20 98.4 5.4 90 25-115 4-121 (126)
110 3soe_A Membrane-associated gua 99.6 2.9E-14 1E-18 89.7 11.9 82 28-115 11-94 (113)
111 3khf_A Microtubule-associated 99.6 1E-14 3.5E-19 89.8 9.6 83 32-115 5-94 (99)
112 1wg6_A Hypothetical protein (r 99.6 4.7E-15 1.6E-19 95.4 8.4 83 33-115 29-123 (127)
113 2dmz_A INAD-like protein; PDZ 99.6 1.9E-14 6.5E-19 92.7 11.1 89 26-115 12-107 (129)
114 1n7t_A 99-MER peptide of densi 99.6 2.2E-14 7.4E-19 89.0 10.8 84 28-114 10-101 (103)
115 2fcf_A Multiple PDZ domain pro 99.6 6.5E-14 2.2E-18 86.7 12.5 87 28-115 3-100 (103)
116 2edv_A FERM and PDZ domain-con 99.6 5.6E-15 1.9E-19 90.6 7.5 84 25-114 4-89 (96)
117 2qkv_A Inactivation-NO-after-p 99.6 6.4E-14 2.2E-18 85.8 11.9 86 25-114 4-91 (96)
118 2iwn_A Multiple PDZ domain pro 99.6 3.7E-14 1.3E-18 86.7 10.9 85 29-114 4-93 (97)
119 2iwq_A Multiple PDZ domain pro 99.6 6E-14 2.1E-18 89.8 12.2 90 25-115 20-120 (123)
120 2e7k_A Maguk P55 subfamily mem 99.6 1.8E-14 6.1E-19 87.5 9.3 82 28-113 5-87 (91)
121 3r0h_A INAD, inactivation-NO-a 99.6 5.8E-14 2E-18 96.8 12.9 95 21-115 10-109 (206)
122 1uit_A Human discs large 5 pro 99.6 2.2E-14 7.6E-19 90.9 9.9 87 28-117 18-104 (117)
123 1x6d_A Interleukin-16; PDZ dom 99.6 3.9E-14 1.3E-18 90.0 11.0 88 27-115 13-104 (119)
124 1vb7_A PDZ and LIM domain 2; P 99.6 1.2E-14 4.3E-19 88.6 8.3 83 31-115 8-90 (94)
125 2kom_A Partitioning defective 99.6 1.3E-13 4.6E-18 87.9 13.4 88 26-114 27-120 (121)
126 1whd_A RGS3, regulator of G-pr 99.6 1.7E-14 6E-19 89.0 8.6 84 26-114 12-95 (100)
127 1uez_A KIAA1526 protein; PDZ d 99.6 1.7E-14 5.8E-19 89.1 8.6 88 25-114 4-93 (101)
128 2z17_A Pleckstrin homology SEC 99.6 4.8E-14 1.7E-18 87.5 10.6 86 24-110 10-103 (104)
129 1v5q_A GRIP1 homolog, glutamat 99.6 5.5E-14 1.9E-18 89.7 11.0 87 28-115 14-108 (122)
130 3kzd_A TIAM-1, T-lymphoma inva 99.6 8.4E-14 2.9E-18 84.9 11.2 85 28-115 5-93 (94)
131 3tsv_A Tight junction protein 99.6 8.7E-14 3E-18 89.1 11.8 87 29-119 29-117 (124)
132 2qt5_A Glutamate receptor-inte 99.6 9E-14 3.1E-18 95.6 12.4 89 26-114 4-93 (200)
133 2kjd_A Sodium/hydrogen exchang 99.5 1E-13 3.5E-18 89.1 11.3 89 25-115 5-94 (128)
134 2la8_A Inactivation-NO-after-p 99.5 8E-14 2.7E-18 87.0 10.3 82 30-114 3-85 (106)
135 1ujv_A Membrane associated gua 99.5 3E-13 1E-17 82.9 12.7 86 24-115 5-92 (96)
136 2edz_A PDZ domain-containing p 99.5 1.3E-13 4.3E-18 87.0 10.9 87 27-115 11-98 (114)
137 1x5n_A Harmonin; PDZ domain, u 99.5 2.3E-13 7.9E-18 85.7 11.8 85 27-113 13-98 (114)
138 1wif_A RSGI RUH-020, riken cDN 99.5 5.4E-14 1.8E-18 90.3 8.7 83 28-113 26-110 (126)
139 1vae_A Rhophilin 2, rhophilin, 99.5 1.2E-14 4E-19 91.5 5.1 86 23-113 9-95 (111)
140 3e17_A Tight junction protein 99.5 2.3E-13 8E-18 82.0 10.0 77 33-115 4-82 (88)
141 2d8i_A T-cell lymphoma invasio 99.5 9.1E-14 3.1E-18 87.8 8.2 86 28-116 14-103 (114)
142 3shw_A Tight junction protein 99.5 2.5E-13 8.7E-18 104.0 12.1 89 30-122 2-92 (468)
143 2vz5_A TAX1-binding protein 3; 99.5 2.7E-13 9.1E-18 88.5 10.3 88 28-116 22-126 (139)
144 3sfj_A TAX1-binding protein 3; 99.5 5E-13 1.7E-17 82.8 11.0 81 32-113 7-104 (104)
145 2lob_A Golgi-associated PDZ an 99.2 2E-15 6.9E-20 95.2 0.0 87 26-112 24-111 (112)
146 1y7n_A Amyloid beta A4 precurs 99.5 6.9E-13 2.3E-17 80.4 11.3 77 29-113 11-89 (90)
147 1v5l_A PDZ and LIM domain 3; a 99.5 3.1E-14 1.1E-18 88.3 5.2 83 31-115 7-89 (103)
148 1qau_A Neuronal nitric oxide s 99.5 2.4E-12 8.3E-17 80.7 12.3 84 31-116 3-89 (112)
149 2xkx_A Disks large homolog 4; 99.5 6.3E-13 2.2E-17 106.8 11.5 91 25-115 55-150 (721)
150 1uf1_A KIAA1526 protein; PDZ d 99.4 3E-12 1E-16 82.2 12.5 88 27-116 18-106 (128)
151 2qbw_A PDZ-fibronectin fusion 99.4 1.6E-12 5.4E-17 88.9 11.8 72 39-112 1-80 (195)
152 2krg_A Na(+)/H(+) exchange reg 99.4 2.2E-13 7.5E-18 94.9 7.3 87 26-114 6-93 (216)
153 3qik_A Phosphatidylinositol 3, 99.4 2.8E-12 9.6E-17 78.8 11.2 81 29-113 17-100 (101)
154 3tsz_A Tight junction protein 99.4 1.1E-12 3.8E-17 98.7 10.9 89 28-120 8-98 (391)
155 3gsl_A Disks large homolog 4; 99.4 1.8E-12 6.3E-17 88.3 11.0 87 29-115 100-191 (196)
156 1p1d_A PDZ45, glutamate recept 99.4 2.6E-12 8.8E-17 88.1 11.2 87 28-115 5-99 (196)
157 3cyy_A Tight junction protein 99.4 5.5E-12 1.9E-16 76.3 11.1 80 29-115 2-84 (92)
158 1b8q_A Protein (neuronal nitri 99.4 1.4E-12 4.7E-17 83.7 8.6 88 27-116 6-96 (127)
159 2xkx_A Disks large homolog 4; 99.4 3.5E-12 1.2E-16 102.5 12.8 95 29-124 307-401 (721)
160 2eaq_A LIM domain only protein 99.4 9.9E-12 3.4E-16 74.9 10.6 79 32-114 6-89 (90)
161 2qt5_A Glutamate receptor-inte 99.4 8.2E-12 2.8E-16 85.7 10.4 87 30-117 107-198 (200)
162 3r0h_A INAD, inactivation-NO-a 99.3 1.5E-11 5E-16 84.7 11.3 81 31-114 115-196 (206)
163 1w9e_A Syntenin 1; cell adhesi 99.3 2.8E-11 9.5E-16 80.9 12.2 82 28-113 3-86 (166)
164 2rcz_A Tight junction protein 99.3 3.6E-11 1.2E-15 70.8 10.8 67 40-113 13-80 (81)
165 2yub_A LIMK-2, LIM domain kina 99.3 2.1E-11 7.1E-16 77.4 9.7 87 28-115 11-106 (118)
166 1wh1_A KIAA1095 protein; PDZ d 99.3 2.5E-11 8.5E-16 77.5 7.9 85 28-115 18-108 (124)
167 3suz_A Amyloid beta A4 precurs 99.2 4E-11 1.4E-15 90.2 7.1 93 24-116 199-296 (388)
168 1p1d_A PDZ45, glutamate recept 99.2 4.3E-10 1.5E-14 76.9 11.3 83 31-114 109-195 (196)
169 2l97_A HTRA, putative serine p 98.9 3E-08 1E-12 63.9 10.6 59 53-115 56-116 (134)
170 2pzd_A Serine protease HTRA2; 98.9 2.6E-08 8.8E-13 62.2 9.1 59 53-115 34-92 (113)
171 3i18_A LMO2051 protein; alpha- 98.8 6E-08 2E-12 59.4 9.3 60 53-116 6-67 (100)
172 3rle_A Golgi reassembly-stacki 98.8 1.8E-08 6.3E-13 69.6 7.5 71 43-114 5-76 (209)
173 1w9e_A Syntenin 1; cell adhesi 98.7 2.5E-07 8.6E-12 61.5 11.8 76 29-112 88-164 (166)
174 2p3w_A Probable serine proteas 98.7 6.6E-08 2.3E-12 60.3 8.3 59 53-115 34-92 (112)
175 1fc6_A Photosystem II D1 prote 98.7 9.6E-08 3.3E-12 71.7 10.6 75 40-115 85-160 (388)
176 2i6v_A General secretion pathw 98.7 4.2E-08 1.4E-12 58.6 6.5 58 55-115 20-79 (87)
177 3id1_A Regulator of sigma E pr 98.7 9.1E-08 3.1E-12 58.1 8.0 56 56-114 4-61 (95)
178 2kl1_A YLBL protein; structure 98.7 5.2E-08 1.8E-12 59.0 6.8 60 53-116 4-65 (94)
179 2kjp_A Uncharacterized protein 98.7 1.2E-08 4E-13 61.7 3.8 58 55-116 2-61 (91)
180 2zpm_A Regulator of sigma E pr 98.7 7.6E-08 2.6E-12 57.7 6.9 58 55-115 5-63 (91)
181 1te0_A Protease DEGS; two doma 98.6 4.8E-07 1.7E-11 66.1 10.3 60 53-115 243-304 (318)
182 3suz_A Amyloid beta A4 precurs 98.6 7.6E-09 2.6E-13 77.8 0.5 66 40-113 308-373 (388)
183 2i4s_A General secretion pathw 98.6 3.1E-07 1.1E-11 56.6 7.6 58 55-115 38-97 (105)
184 3k50_A Putative S41 protease; 98.6 8.1E-08 2.8E-12 72.5 5.7 72 40-115 74-147 (403)
185 1y8t_A Hypothetical protein RV 98.6 7.3E-07 2.5E-11 65.3 10.5 71 41-115 230-303 (324)
186 3stj_A Protease DEGQ; serine p 98.5 5E-07 1.7E-11 66.9 9.0 61 53-116 262-324 (345)
187 4a8c_A Periplasmic PH-dependen 98.5 6.9E-07 2.4E-11 68.0 9.4 60 54-116 363-422 (436)
188 4fgm_A Aminopeptidase N family 98.5 4.4E-07 1.5E-11 71.6 8.1 69 40-115 485-555 (597)
189 1lcy_A HTRA2 serine protease; 98.4 9.9E-07 3.4E-11 64.7 8.7 58 54-115 256-313 (325)
190 2hga_A Conserved protein MTH13 98.4 1.2E-06 4E-11 55.8 7.8 58 53-115 24-83 (125)
191 4a8c_A Periplasmic PH-dependen 98.4 8.9E-07 3E-11 67.4 8.0 60 53-115 262-323 (436)
192 3pv2_A DEGQ; trypsin fold, PDZ 98.4 1.1E-06 3.6E-11 67.3 7.3 59 54-115 386-444 (451)
193 3rle_A Golgi reassembly-stacki 98.4 1.2E-06 4.1E-11 60.4 7.0 70 41-114 96-170 (209)
194 3pv2_A DEGQ; trypsin fold, PDZ 98.3 1E-06 3.5E-11 67.4 6.8 59 54-115 282-342 (451)
195 3qo6_A Protease DO-like 1, chl 98.3 2.1E-06 7E-11 63.6 8.1 60 54-116 251-323 (348)
196 3num_A Serine protease HTRA1; 98.1 3.2E-07 1.1E-11 67.5 0.0 60 53-116 253-312 (332)
197 1ky9_A Protease DO, DEGP, HTRA 98.0 1.1E-06 3.6E-11 67.3 0.0 60 53-115 382-441 (448)
198 1k32_A Tricorn protease; prote 97.9 4.1E-05 1.4E-09 63.5 8.5 68 40-114 737-815 (1045)
199 1ky9_A Protease DO, DEGP, HTRA 97.9 6.7E-06 2.3E-10 62.8 3.4 59 54-115 286-346 (448)
200 4fln_A Protease DO-like 2, chl 97.6 0.0001 3.5E-09 57.5 5.9 62 53-116 276-347 (539)
201 4fln_A Protease DO-like 2, chl 96.7 0.0069 2.4E-07 47.3 8.0 54 54-110 415-469 (539)
202 3dor_A Protein CT_858, CPAF; m 55.4 23 0.00077 28.0 5.3 40 41-87 85-124 (583)
203 3i2z_B RNA chaperone, negative 23.2 99 0.0034 16.7 3.7 45 32-80 9-53 (71)
204 3m3h_A OPRT, oprtase, orotate 21.6 1.6E+02 0.0054 20.1 4.6 36 71-106 132-167 (234)
205 3cam_A Cold-shock domain famil 20.9 1.1E+02 0.0037 16.4 4.1 46 32-81 5-50 (67)
No 1
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-17 Score=101.68 Aligned_cols=89 Identities=84% Similarity=1.226 Sum_probs=80.0
Q ss_pred CCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 27 ~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
...+++|+|.+...+|||++.++.+...+++|..|.+++||+++|+|+.||+|++|||..+.++++.++..+++..+..+
T Consensus 3 ~~~~r~v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 82 (93)
T 2dkr_A 3 SGSSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSV 82 (93)
T ss_dssp SSCSCEEEEECCTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEEEeCCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence 35788999999999999999987665678999999999999999559999999999999999999999999999888889
Q ss_pred EEEEEECCc
Q psy12579 107 KLVVRYTPK 115 (138)
Q Consensus 107 ~l~v~r~~~ 115 (138)
.|++.|++.
T Consensus 83 ~l~v~r~~~ 91 (93)
T 2dkr_A 83 KLVVRSGPS 91 (93)
T ss_dssp EEEECCCCS
T ss_pred EEEEEeCCC
Confidence 999988764
No 2
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.75 E-value=3e-17 Score=102.06 Aligned_cols=96 Identities=39% Similarity=0.706 Sum_probs=84.4
Q ss_pred cCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 24 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
.+....++.|++.+++.+|||++.++.+ ..+++|..|.++|||+++ | |+.||+|++|||.++.++++.++...++..
T Consensus 6 ~~~~~~~~~v~l~k~~~glG~~~~~~~~-~~gv~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 83 (104)
T 3i4w_A 6 EDIPREPRRIVIHRGSTGLGFNIVGGEX-GEGIFISFILAGGPADLS-GELRKGDQILSVNGVDLRNASHEQAAIALKNA 83 (104)
T ss_dssp CCCCSSCEEEEEECBTTBTSEEEEECC--CCCEEEEEECTTSHHHHH-CCCCTTEEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred CCCCCccEEEEEEeCCCccCEEEECCCC-CCCEEEEEECCCChHHhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 3455788999999998999999998754 348999999999999999 7 999999999999999999999999999999
Q ss_pred CCeEEEEEEECCchHHHHH
Q psy12579 103 QRSVKLVVRYTPKVLEEME 121 (138)
Q Consensus 103 ~~~v~l~v~r~~~~~~~~~ 121 (138)
+..+.|++.|++..+..++
T Consensus 84 ~~~v~l~v~r~~~~~~~~~ 102 (104)
T 3i4w_A 84 GQTVTIIAQYKPEEYSRFE 102 (104)
T ss_dssp CSEEEEEEEECHHHHHHHH
T ss_pred CCeEEEEEEECcchhhhhc
Confidence 9999999999987666554
No 3
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.75 E-value=8.6e-18 Score=108.73 Aligned_cols=91 Identities=30% Similarity=0.535 Sum_probs=79.8
Q ss_pred cCCCCCcEEEEEecCCCCcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579 24 SEGHAHPRVVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~ 100 (138)
.+.....+.|++.++..+|||+|.++.+ ...+++|..|.++++|+++|+|+.||+|++|||..+.+++|.++..+++
T Consensus 24 ~~~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~ 103 (130)
T 1i16_A 24 STAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIK 103 (130)
T ss_dssp CSSSEEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHH
T ss_pred CCCCCcEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3444677889999988999999998876 3567999999999999999999999999999999999999999999999
Q ss_pred hCCC-eEEEEEEECC
Q psy12579 101 QAQR-SVKLVVRYTP 114 (138)
Q Consensus 101 ~~~~-~v~l~v~r~~ 114 (138)
..+. .+.|+|+|..
T Consensus 104 ~~~~~~v~l~v~r~~ 118 (130)
T 1i16_A 104 ALPDGPVTIVIRRKS 118 (130)
T ss_dssp TSCSSEEEEEEEEES
T ss_pred hCCCceEEEEEEeCC
Confidence 9854 5899998864
No 4
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.75 E-value=6.2e-17 Score=96.56 Aligned_cols=78 Identities=23% Similarity=0.413 Sum_probs=70.9
Q ss_pred CCCcEEEEEecCCC-CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 27 HAHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 27 ~~~~~~v~l~~~~~-~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
+..+|+|+|+++.. +|||++.++ +|..+.+++||+++ ||+.||+|++|||.++.+++|+++.++|+.++..
T Consensus 2 ~~~~r~v~l~k~~~g~~Gf~i~~g-------~I~~v~~gspA~~a-Gl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~ 73 (82)
T 1r6j_A 2 AMDPRTITMHKDSTGHVGFIFKNG-------KITSIVKDSSAARN-GLLTEHNICEINGQNVIGLKDSQIADILSTSGTV 73 (82)
T ss_dssp TTCCEEEEEECCTTSCCCEEEETT-------EEEEECTTSHHHHH-TCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred CCceEEEEEEECCCCCeEEEEECC-------EEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCE
Confidence 45789999999874 699999863 47899999999999 8999999999999999999999999999999999
Q ss_pred EEEEEEE
Q psy12579 106 VKLVVRY 112 (138)
Q Consensus 106 v~l~v~r 112 (138)
+.|++..
T Consensus 74 V~L~v~p 80 (82)
T 1r6j_A 74 VTITIMP 80 (82)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999865
No 5
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.74 E-value=1.2e-17 Score=106.71 Aligned_cols=94 Identities=33% Similarity=0.507 Sum_probs=75.9
Q ss_pred hccCCCCCcEEEEEecCC-CCcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHH
Q psy12579 22 AASEGHAHPRVVELPKTD-EGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVE 97 (138)
Q Consensus 22 ~~~~~~~~~~~v~l~~~~-~~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~ 97 (138)
...+....+++|.|.++. .+|||++.++.+ ...+++|..|.++|||+++++|+.||+|++|||.++.++++.++..
T Consensus 17 ~~~s~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~ 96 (120)
T 2iwo_A 17 NLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVN 96 (120)
T ss_dssp --------CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHH
T ss_pred cCCCCCCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 344556788999999987 599999998754 2346999999999999999899999999999999999999999999
Q ss_pred HHHhCCCeEEEEEEECCc
Q psy12579 98 LLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 98 ~l~~~~~~v~l~v~r~~~ 115 (138)
+++..+..+.|+|.|+..
T Consensus 97 ~l~~~~~~v~l~v~r~g~ 114 (120)
T 2iwo_A 97 LLKNASGSIEMQVVAGGD 114 (120)
T ss_dssp HHHHCCSEEEEEEECCTT
T ss_pred HHHcCCCeEEEEEEECCc
Confidence 999999999999998764
No 6
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.74 E-value=9.8e-17 Score=100.33 Aligned_cols=90 Identities=29% Similarity=0.549 Sum_probs=80.0
Q ss_pred CCCCcEEEEEecCCCCcCeEEeccCCC--------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHH
Q psy12579 26 GHAHPRVVELPKTDEGLGFNVMGGKEQ--------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVE 97 (138)
Q Consensus 26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~--------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~ 97 (138)
...++++|.|.++..+|||++.++.+. ..+++|..|.+++||+++++|+.||+|++||+.++.++++.++..
T Consensus 5 ~~~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~ 84 (107)
T 1uhp_A 5 SSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE 84 (107)
T ss_dssp CSSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred cCcEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 346788899999989999999986532 457999999999999999899999999999999999999999999
Q ss_pred HHHhCCCeEEEEEEECCc
Q psy12579 98 LLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 98 ~l~~~~~~v~l~v~r~~~ 115 (138)
+++..+..+.|++.|...
T Consensus 85 ~~~~~~~~v~l~v~R~~~ 102 (107)
T 1uhp_A 85 AFKTAKEPIVVQVLRRTS 102 (107)
T ss_dssp HHHHCCSSEEEEEEECCS
T ss_pred HHHcCCCcEEEEEEeCCC
Confidence 999998999999988643
No 7
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.74 E-value=6.2e-17 Score=98.17 Aligned_cols=86 Identities=40% Similarity=0.620 Sum_probs=77.5
Q ss_pred CCcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 28 AHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 28 ~~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
..+++|++.+. ..+|||++.++.+...+++|..|.++|||+++++|++||+|++|||.++.++++.++..+++..+..+
T Consensus 3 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v 82 (90)
T 1qav_A 3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV 82 (90)
T ss_dssp SSCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred CccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence 57899999995 58999999987665668999999999999998899999999999999999999999999999888899
Q ss_pred EEEEEEC
Q psy12579 107 KLVVRYT 113 (138)
Q Consensus 107 ~l~v~r~ 113 (138)
.|++.|.
T Consensus 83 ~l~v~r~ 89 (90)
T 1qav_A 83 VLEVKYM 89 (90)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9998773
No 8
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.74 E-value=7.3e-17 Score=97.87 Aligned_cols=87 Identities=34% Similarity=0.559 Sum_probs=78.4
Q ss_pred CCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 27 ~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
.+.+|+|.+.++..+|||++.++.+ ..+++|..|.++|||+.+ ||+.||+|++|||.++.++++.++..+++..+..+
T Consensus 2 ~~~~r~v~l~k~~~g~G~~~~~~~~-~~gv~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v 79 (90)
T 2he4_A 2 MLRPRLCHLRKGPQGYGFNLHSDKS-RPGQYIRSVDPGSPAARS-GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEA 79 (90)
T ss_dssp TTCCEEEEEECBTTBCCEEEEECSS-SSSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEE
T ss_pred CCCcEEEEEEECCCCccEEEEccCC-CCCEEEEEECCCChHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcE
Confidence 4578999999999999999998654 457999999999999999 89999999999999999999999999999888899
Q ss_pred EEEEEECCc
Q psy12579 107 KLVVRYTPK 115 (138)
Q Consensus 107 ~l~v~r~~~ 115 (138)
.|++.|...
T Consensus 80 ~l~v~r~~~ 88 (90)
T 2he4_A 80 RLLVVGPST 88 (90)
T ss_dssp EEEEECCCC
T ss_pred EEEEEccCC
Confidence 999988753
No 9
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.73 E-value=8.3e-17 Score=98.07 Aligned_cols=86 Identities=24% Similarity=0.355 Sum_probs=75.7
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~ 105 (138)
.+++.|++.|.+++|||+|.++. ...+||..+.+||+|++++.|++||.|++|||.++.+++|.++.++|++. +..
T Consensus 4 g~~k~V~l~K~~~~LG~tI~~~g--~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~ 81 (95)
T 3gge_A 4 GIEKEVNVYKSEDSLGLTITDNG--VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEEL 81 (95)
T ss_dssp EEEEEEEEECCSSCCCEEEECSS--SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCE
T ss_pred CeEEEEEEEECCCCceEEEEcCC--CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCE
Confidence 46788999999999999998642 34589999999999999999999999999999999999999999999996 457
Q ss_pred EEEEEEECCc
Q psy12579 106 VKLVVRYTPK 115 (138)
Q Consensus 106 v~l~v~r~~~ 115 (138)
++|.+.++-.
T Consensus 82 ~~L~lv~p~~ 91 (95)
T 3gge_A 82 FTMKLIEPKK 91 (95)
T ss_dssp EEEEEEEECS
T ss_pred EEEEEECccc
Confidence 8888877643
No 10
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.72 E-value=1.1e-16 Score=98.97 Aligned_cols=87 Identities=39% Similarity=0.638 Sum_probs=78.0
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
..++.|+|.++..+|||++.++.+. ..+++|..|.++++|+++ | |+.||+|++|||..+.++++.++..+++.
T Consensus 6 ~~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~ 84 (101)
T 2jik_A 6 VTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALD-GRLQEGDKILSVNGQDLKNLLHQDAVDLFRN 84 (101)
T ss_dssp EEEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECSSCCHHHHHHHHHT
T ss_pred CccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 4678899999889999999987653 358999999999999999 6 99999999999999999999999999988
Q ss_pred CCCeEEEEEEECCc
Q psy12579 102 AQRSVKLVVRYTPK 115 (138)
Q Consensus 102 ~~~~v~l~v~r~~~ 115 (138)
.+..+.|+|.|++.
T Consensus 85 ~g~~v~l~v~R~~~ 98 (101)
T 2jik_A 85 AGYAVSLRVQHRLE 98 (101)
T ss_dssp CCSEEEEEEEEESC
T ss_pred CCCeEEEEEEeCCC
Confidence 88899999988753
No 11
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.72 E-value=6.7e-17 Score=97.97 Aligned_cols=84 Identities=43% Similarity=0.752 Sum_probs=75.6
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--Ce
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RS 105 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~--~~ 105 (138)
++++|.+.++..+|||++.++.+...+++|..|.++|||+++ | |+.||.|++|||.++.+.++.++..+++..+ ..
T Consensus 2 ~~~~v~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~a-G~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~ 80 (90)
T 2q9v_A 2 MEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTD-GRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGH 80 (90)
T ss_dssp EEEEEEEECBTTBCCEEEEECSSTTSCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred CcEEEEEEECCCccCEEEEccccCCCCEEEEEECCCChHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence 568899999999999999987665667999999999999999 6 9999999999999999999999999998864 48
Q ss_pred EEEEEEEC
Q psy12579 106 VKLVVRYT 113 (138)
Q Consensus 106 v~l~v~r~ 113 (138)
+.|+|.|.
T Consensus 81 v~l~v~R~ 88 (90)
T 2q9v_A 81 VNLTVRQT 88 (90)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 99999875
No 12
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-16 Score=99.46 Aligned_cols=90 Identities=46% Similarity=0.709 Sum_probs=77.7
Q ss_pred CCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 26 GHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 26 ~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
.+..++.|.+.+.. .+|||++.++.+...+++|..|.++|+|+++++|+.||+|++|||.++.++++.++..+++..++
T Consensus 6 ~~~~~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~ 85 (103)
T 2dc2_A 6 GVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG 85 (103)
T ss_dssp ---CEEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCS
T ss_pred CCCCcEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 44567888898765 78999999877655679999999999999966999999999999999999999999999999989
Q ss_pred eEEEEEEECCc
Q psy12579 105 SVKLVVRYTPK 115 (138)
Q Consensus 105 ~v~l~v~r~~~ 115 (138)
.+.|++.+...
T Consensus 86 ~v~l~v~~~~~ 96 (103)
T 2dc2_A 86 EIEFEVVYVAL 96 (103)
T ss_dssp EEEEEEEECC-
T ss_pred cEEEEEEecCC
Confidence 99999988754
No 13
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.72 E-value=5.2e-17 Score=100.96 Aligned_cols=91 Identities=35% Similarity=0.634 Sum_probs=80.0
Q ss_pred cCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-
Q psy12579 24 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA- 102 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~- 102 (138)
+....+.+.+.|.+...+|||++.++.+...+++|..|.+++||+++|.|+.||+|++|||.++.++++.++..+++..
T Consensus 4 ~~~~~~~~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~ 83 (103)
T 1uep_A 4 GSSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAA 83 (103)
T ss_dssp CSSSEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEEEEEeCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 3445677889999988999999998776667899999999999999933999999999999999999999999999886
Q ss_pred -CCeEEEEEEECC
Q psy12579 103 -QRSVKLVVRYTP 114 (138)
Q Consensus 103 -~~~v~l~v~r~~ 114 (138)
+..+.|+|.|+.
T Consensus 84 ~g~~v~l~v~R~~ 96 (103)
T 1uep_A 84 RNGQVNLTVRRKV 96 (103)
T ss_dssp HHTEEEEEEEEEC
T ss_pred CCCcEEEEEEeCC
Confidence 789999998874
No 14
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.8e-16 Score=97.18 Aligned_cols=87 Identities=30% Similarity=0.478 Sum_probs=77.1
Q ss_pred CCcEEEEEecCCCCcCeEEeccC--CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGK--EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~--~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
..+|+|.+.++..+|||++.+.. +...+++|..|.++|||+.+ ||+.||.|++|||.++.++++.++..+++..+..
T Consensus 2 ~~~r~v~l~k~~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~ 80 (96)
T 2v90_A 2 MKPRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKA-GMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSC 80 (96)
T ss_dssp CCCEEEEEECBTTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHT-TCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred CCCEEEEEEeCCCcccEEEEeccCCCCCCCeEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence 36899999999999999998732 23347999999999999999 8999999999999999999999999999888889
Q ss_pred EEEEEEECCc
Q psy12579 106 VKLVVRYTPK 115 (138)
Q Consensus 106 v~l~v~r~~~ 115 (138)
+.|++.|+..
T Consensus 81 v~l~v~r~~~ 90 (96)
T 2v90_A 81 VSLTVVDPEA 90 (96)
T ss_dssp EEEEEECCCT
T ss_pred EEEEEECCCC
Confidence 9999998764
No 15
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.71 E-value=3.5e-16 Score=97.35 Aligned_cols=89 Identities=43% Similarity=0.692 Sum_probs=79.4
Q ss_pred CCCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 25 EGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
.....+++|.|.+.. .+|||++.++.+...+++|..|.+++||+++ ||+.||+|++|||..+.++++.++..+++. +
T Consensus 11 ~~~~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~ 88 (104)
T 1wi2_A 11 LTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQDIEHSKAVEILKT-A 88 (104)
T ss_dssp CCSSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHH-TCCTTCEEEEETTEECSSCCHHHHHHHHHH-S
T ss_pred cCCCCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhC-C
Confidence 334678999999977 7899999987665678999999999999999 899999999999999999999999999988 7
Q ss_pred CeEEEEEEECCc
Q psy12579 104 RSVKLVVRYTPK 115 (138)
Q Consensus 104 ~~v~l~v~r~~~ 115 (138)
..+.|+|+|.+.
T Consensus 89 ~~v~l~v~r~~~ 100 (104)
T 1wi2_A 89 REISMRVRFFSG 100 (104)
T ss_dssp SSEEEEEECCCC
T ss_pred CEEEEEEEECCC
Confidence 889999998764
No 16
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.71 E-value=3e-16 Score=95.35 Aligned_cols=85 Identities=24% Similarity=0.422 Sum_probs=74.1
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l 108 (138)
.+++|++.++..+|||.+.+ ..+++|..|.++|||+++ ||+.||.|++|||..+.++++.++..+++..+..+.|
T Consensus 3 ~~r~v~l~~~~~g~G~~l~~----~~~~~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l 77 (91)
T 2f5y_A 3 RYRQITIPRGKDGFGFTICC----DSPVRVQAVDSGGPAERA-GLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIIL 77 (91)
T ss_dssp EEEEEEEECBTTBTSEEEEC----SSSCEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred ceEEEEEEeCCCCccEEEec----CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 57889999999999999986 346999999999999999 8999999999999999999999999999888888999
Q ss_pred EEEECCchHH
Q psy12579 109 VVRYTPKVLE 118 (138)
Q Consensus 109 ~v~r~~~~~~ 118 (138)
++.|..+...
T Consensus 78 ~v~R~~~~~~ 87 (91)
T 2f5y_A 78 LVWRMVPQVK 87 (91)
T ss_dssp EEEECC----
T ss_pred EEEeCCCCCC
Confidence 9999865443
No 17
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.71 E-value=3.3e-16 Score=97.06 Aligned_cols=87 Identities=40% Similarity=0.617 Sum_probs=77.7
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
.+.++|++.++..+|||++.++.+. ..+++|..|.++|||+++ | |+.||.|++|||.++.++++.++..+++.
T Consensus 3 ~~~~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~ 81 (102)
T 2i1n_A 3 FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMD-GRLGVNDCVLRVNEVDVSEVVHSRAVEALKE 81 (102)
T ss_dssp EEEEEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 3567899999889999999987542 458999999999999999 6 99999999999999999999999999999
Q ss_pred CCCeEEEEEEECCc
Q psy12579 102 AQRSVKLVVRYTPK 115 (138)
Q Consensus 102 ~~~~v~l~v~r~~~ 115 (138)
.+..+.|++.|++.
T Consensus 82 ~g~~v~l~v~R~~~ 95 (102)
T 2i1n_A 82 AGPVVRLVVRRRQP 95 (102)
T ss_dssp SCSEEEEEEEEECC
T ss_pred CCCeEEEEEEeCCC
Confidence 88999999998764
No 18
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.71 E-value=1e-16 Score=101.90 Aligned_cols=89 Identities=37% Similarity=0.693 Sum_probs=78.6
Q ss_pred CCCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 27 HAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 27 ~~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
.+.+++|+|.++..+|||++.++.+. ..+++|..|.++|||+++|+|+.||+|++|||.++.++++.++..+++..+
T Consensus 23 ~~~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 102 (117)
T 2fne_A 23 MPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK 102 (117)
T ss_dssp CCEEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred CCccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 46778899999999999999987532 347999999999999999449999999999999999999999999999888
Q ss_pred CeEEEEEEECCc
Q psy12579 104 RSVKLVVRYTPK 115 (138)
Q Consensus 104 ~~v~l~v~r~~~ 115 (138)
..+.|+|.|.+.
T Consensus 103 ~~v~l~v~R~g~ 114 (117)
T 2fne_A 103 GTVTLMVLSSDE 114 (117)
T ss_dssp SSEEEEEEECSC
T ss_pred CeEEEEEEeCCc
Confidence 889999998764
No 19
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.70 E-value=4.8e-16 Score=94.34 Aligned_cols=84 Identities=37% Similarity=0.573 Sum_probs=73.3
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 107 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~ 107 (138)
.++++|++.+++.+|||++.++.+ ..+++|..|.++|||+.+ ||+.||.|++|||.++.++++.++..+++..++.+.
T Consensus 2 ~~~r~v~l~r~~~g~G~~~~~~~~-~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~ 79 (91)
T 1g9o_A 2 MLPRLCCLEKGPNGYGFHLHGEKG-KLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVR 79 (91)
T ss_dssp CCCEEEEEECBTTBCCEEEEECTT-CSSEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred CccEEEEEEeCCCcccEEEEecCC-CCCEEEEEECCCCHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence 368999999999999999988653 358999999999999999 899999999999999999999999999998877766
Q ss_pred EEEEEC
Q psy12579 108 LVVRYT 113 (138)
Q Consensus 108 l~v~r~ 113 (138)
+.+.+.
T Consensus 80 ~~~~~r 85 (91)
T 1g9o_A 80 LLVVDP 85 (91)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 655443
No 20
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.70 E-value=2.9e-16 Score=98.98 Aligned_cols=92 Identities=32% Similarity=0.583 Sum_probs=78.3
Q ss_pred hccCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579 22 AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLK 100 (138)
Q Consensus 22 ~~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~ 100 (138)
.......+.++|++.++..+|||++.++.+...+++|..|.++|+|+++ | |+.||+|++|||..+.++++.++..+++
T Consensus 17 t~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~ 95 (112)
T 2r4h_A 17 NLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERS-GKMRIGDEILEINGETTKNMKHSRAIELIK 95 (112)
T ss_dssp ------CCEEEEEEECBTTBTSEEEEECGGGTCCEEEEEECTTSHHHHT-TCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred ccccCCCceEEEEEEcCCCccCEEEeccccCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3344456788999999888999999987655678999999999999999 6 9999999999999999999999999998
Q ss_pred hCCCeEEEEEEECC
Q psy12579 101 QAQRSVKLVVRYTP 114 (138)
Q Consensus 101 ~~~~~v~l~v~r~~ 114 (138)
..+..+.|+|.|..
T Consensus 96 ~~g~~v~l~v~R~~ 109 (112)
T 2r4h_A 96 NGGRRVRLFLKRGE 109 (112)
T ss_dssp TTTTEEEEEEECCE
T ss_pred cCCCeEEEEEEeCC
Confidence 88889999998864
No 21
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.70 E-value=5.7e-16 Score=95.17 Aligned_cols=87 Identities=33% Similarity=0.550 Sum_probs=77.0
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
...++|++.+...+|||++.++.+...+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+++..+..+
T Consensus 4 ~~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v 82 (97)
T 1n7e_A 4 AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERT-GAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETV 82 (97)
T ss_dssp CCEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHH-TCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred ceEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 4567888988878899999987654568999999999999999 7 9999999999999999999999999998778899
Q ss_pred EEEEEECCc
Q psy12579 107 KLVVRYTPK 115 (138)
Q Consensus 107 ~l~v~r~~~ 115 (138)
.|++.|...
T Consensus 83 ~l~v~R~~~ 91 (97)
T 1n7e_A 83 TLKIKKQTD 91 (97)
T ss_dssp EEEEECCCC
T ss_pred EEEEEeCCC
Confidence 999988753
No 22
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.70 E-value=4.7e-16 Score=97.15 Aligned_cols=89 Identities=38% Similarity=0.708 Sum_probs=76.2
Q ss_pred CCCCcEEEEEecCCCCcCeEEeccCCCC------------CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHH
Q psy12579 26 GHAHPRVVELPKTDEGLGFNVMGGKEQN------------SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93 (138)
Q Consensus 26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~~------------~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~ 93 (138)
.+..+++|.+.+...+|||++.++.+.. ..++|..|.++|||+++ ||+.||+|++|||.++.++++.
T Consensus 3 ~~~~~r~v~l~k~~~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~ 81 (107)
T 3qe1_A 3 HGGSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRA-GVRKGDRILEVNGVNVEGATHK 81 (107)
T ss_dssp ---CCEEEEEECBTTBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHH
T ss_pred CCCCcEEEEEEECCCCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHH
Confidence 4568899999999889999998864322 22469999999999999 8999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEECCc
Q psy12579 94 KAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 94 ~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
++..+++..+..+.|++.|...
T Consensus 82 ~~~~~l~~~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 82 QVVDLIRAGEKELILTVLSVES 103 (107)
T ss_dssp HHHHHHHHCSSEEEEEEECSSC
T ss_pred HHHHHHHcCCCEEEEEEEcCCC
Confidence 9999999889999999998754
No 23
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.70 E-value=5.5e-16 Score=94.59 Aligned_cols=85 Identities=39% Similarity=0.599 Sum_probs=75.5
Q ss_pred CcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
+.++|+|.+++.+|||++.++.+. ..+++|..|.+++||+++ | |+.||.|++|||.++.++++.++..+++..
T Consensus 3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 81 (94)
T 2fe5_A 3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKD-GRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT 81 (94)
T ss_dssp CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 567899999999999999986542 347999999999999999 6 999999999999999999999999999888
Q ss_pred CCeEEEEEEECC
Q psy12579 103 QRSVKLVVRYTP 114 (138)
Q Consensus 103 ~~~v~l~v~r~~ 114 (138)
+..+.|++.|+.
T Consensus 82 ~~~v~l~v~R~g 93 (94)
T 2fe5_A 82 SDMVYLKVAKPG 93 (94)
T ss_dssp CSEEEEEEECCC
T ss_pred CCeEEEEEEcCC
Confidence 889999998764
No 24
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.70 E-value=4e-16 Score=95.73 Aligned_cols=86 Identities=28% Similarity=0.501 Sum_probs=74.2
Q ss_pred CCCcEEEEEecCC-CCcCeEEec-------cCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579 27 HAHPRVVELPKTD-EGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98 (138)
Q Consensus 27 ~~~~~~v~l~~~~-~~~G~~l~~-------~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~ 98 (138)
++.+++|.+.++. .+|||++.+ +.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+
T Consensus 2 ~~~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~ 80 (96)
T 2ego_A 2 SQQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLA-GLTPGDTIASVNGLNVEGIRHREIVDI 80 (96)
T ss_dssp CCCEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 4578999999987 689999986 3333457899999999999999 899999999999999999999999999
Q ss_pred HHhCCCeEEEEEEEC
Q psy12579 99 LKQAQRSVKLVVRYT 113 (138)
Q Consensus 99 l~~~~~~v~l~v~r~ 113 (138)
++..+..+.|++.+.
T Consensus 81 l~~~~~~v~l~v~~~ 95 (96)
T 2ego_A 81 IKASGNVLRLETLYG 95 (96)
T ss_dssp HHHTTTEEEEEEECC
T ss_pred HHhCCCeEEEEEEEC
Confidence 998888899988764
No 25
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.70 E-value=2.8e-16 Score=97.92 Aligned_cols=89 Identities=39% Similarity=0.701 Sum_probs=78.7
Q ss_pred CCCCcEEEEEecCCCCcCeEEeccCCC------CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579 26 GHAHPRVVELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVEL 98 (138)
Q Consensus 26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~------~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~ 98 (138)
...+..++.|.+...+|||++.++.+. ..+++|..|.+++||+++ | |+.||+|++||+.++.++++.++..+
T Consensus 4 ~~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~ 82 (105)
T 1wha_A 4 GSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRA-GTLQVGDRVLSINGVDVTEARHDHAVSL 82 (105)
T ss_dssp CCCEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHH-SSCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred CCCeeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 345677899999889999999987642 457999999999999999 6 99999999999999999999999999
Q ss_pred HHhCCCeEEEEEEECCc
Q psy12579 99 LKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 99 l~~~~~~v~l~v~r~~~ 115 (138)
++..+..+.|+|.|++.
T Consensus 83 l~~~g~~v~l~v~R~~~ 99 (105)
T 1wha_A 83 LTAASPTIALLLEREAG 99 (105)
T ss_dssp HTSCCSCEEEEEEECCC
T ss_pred HHcCCCeEEEEEEECCC
Confidence 98888899999998753
No 26
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.70 E-value=3e-16 Score=94.73 Aligned_cols=84 Identities=29% Similarity=0.474 Sum_probs=74.4
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l 108 (138)
...+|++ +++.+|||++.++.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++..+..+.|
T Consensus 3 ~~~~v~l-~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l 80 (88)
T 2uzc_A 3 SNYSVSL-VGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQA-NVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNM 80 (88)
T ss_dssp CEEEEEE-ESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred cEEEEEE-cCCCcccEEEECcCCCCCCeEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 3566777 5668999999987766667999999999999999 8999999999999999999999999999888889999
Q ss_pred EEEECC
Q psy12579 109 VVRYTP 114 (138)
Q Consensus 109 ~v~r~~ 114 (138)
++.|+.
T Consensus 81 ~v~R~g 86 (88)
T 2uzc_A 81 TLQRES 86 (88)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 998875
No 27
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=99.11 Aligned_cols=88 Identities=36% Similarity=0.574 Sum_probs=77.5
Q ss_pred CCcEEEEEecCCCCcCeEEeccCC----CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKE----QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA- 102 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~----~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~- 102 (138)
.++++|.|.+.+.+|||++.++.+ ...+++|..|.+++||+++|.|+.||+|++|||.++.++++.++..+++..
T Consensus 14 ~~~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 93 (108)
T 2d92_A 14 PEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP 93 (108)
T ss_dssp SSCEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSC
T ss_pred CceEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 467899999999999999998654 245799999999999999944999999999999999999999999999986
Q ss_pred CCeEEEEEEECCc
Q psy12579 103 QRSVKLVVRYTPK 115 (138)
Q Consensus 103 ~~~v~l~v~r~~~ 115 (138)
+..+.|+|.|.+.
T Consensus 94 ~~~v~l~v~R~~~ 106 (108)
T 2d92_A 94 PGLVHLGICSGPS 106 (108)
T ss_dssp SEEEEEEEECCCC
T ss_pred CCeEEEEEEcCCC
Confidence 5689999988753
No 28
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.70 E-value=5.1e-16 Score=100.61 Aligned_cols=94 Identities=33% Similarity=0.495 Sum_probs=80.1
Q ss_pred hccCCCCCcEEEEEecCC-CCcCeEEeccCCC------------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCC
Q psy12579 22 AASEGHAHPRVVELPKTD-EGLGFNVMGGKEQ------------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88 (138)
Q Consensus 22 ~~~~~~~~~~~v~l~~~~-~~~G~~l~~~~~~------------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~ 88 (138)
..+....++++|++.+.+ .+|||+|.++... ..+++|..|.++|+|+++ ||+.||+|++|||..+.
T Consensus 20 ~~s~~~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~a-GL~~GD~Il~Vng~~v~ 98 (132)
T 3l4f_D 20 SGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRMGDFLIEVNGQNVV 98 (132)
T ss_dssp CSCCCCCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGG-TCCTTCEEEEESSSBCT
T ss_pred CCCCcCCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECC
Confidence 344445788999999854 7999999987642 126899999999999999 79999999999999999
Q ss_pred CCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12579 89 GEDHGKAVELLKQAQRSVKLVVRYTPKV 116 (138)
Q Consensus 89 ~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 116 (138)
++++.++..+++..+..+.|+|.+....
T Consensus 99 ~~~~~~~~~~l~~~g~~v~l~v~~~~~~ 126 (132)
T 3l4f_D 99 KVGHRQVVNMIRQGGNTLMVKVVMVTRH 126 (132)
T ss_dssp TSCHHHHHHHHHHTTTEEEEEEECCCC-
T ss_pred CCCHHHHHHHHHcCCCEEEEEEEECCCC
Confidence 9999999999999999999999877543
No 29
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.70 E-value=4.8e-16 Score=96.86 Aligned_cols=88 Identities=39% Similarity=0.607 Sum_probs=77.1
Q ss_pred CcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
+.++|+|.+++.+|||++.++.+. ..+++|..|.++|+|+++|.|+.||.|++|||.++.+.++.++...++..+
T Consensus 3 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 82 (105)
T 2awx_A 3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTS 82 (105)
T ss_dssp CEEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCC
T ss_pred eEEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 567899999889999999987542 248999999999999999339999999999999999999999999998888
Q ss_pred CeEEEEEEECCch
Q psy12579 104 RSVKLVVRYTPKV 116 (138)
Q Consensus 104 ~~v~l~v~r~~~~ 116 (138)
..+.|+|.|+...
T Consensus 83 ~~v~l~v~R~~~~ 95 (105)
T 2awx_A 83 DFVYLKVAKPTSM 95 (105)
T ss_dssp SEEEEEEECCCC-
T ss_pred CeEEEEEEcCCCC
Confidence 8999999988643
No 30
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.70 E-value=4.4e-16 Score=93.78 Aligned_cols=84 Identities=48% Similarity=0.747 Sum_probs=75.0
Q ss_pred CcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579 29 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 107 (138)
Q Consensus 29 ~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~ 107 (138)
+++++++.+.. .+|||++.++.+...+++|..|.++|||+++++|+.||+|++|||.++.++++.++..+++..+..+.
T Consensus 2 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~ 81 (87)
T 4e34_A 2 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE 81 (87)
T ss_dssp CCEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred CEEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence 57889999875 58999999876656679999999999999944999999999999999999999999999999988999
Q ss_pred EEEEE
Q psy12579 108 LVVRY 112 (138)
Q Consensus 108 l~v~r 112 (138)
|++.+
T Consensus 82 l~v~~ 86 (87)
T 4e34_A 82 FEVVY 86 (87)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98875
No 31
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.70 E-value=1.9e-16 Score=100.66 Aligned_cols=91 Identities=36% Similarity=0.554 Sum_probs=78.8
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l 99 (138)
....+.+.|++.++..+|||++.++.+. ..+++|..|.++|+|+++|.|+.||+|++|||..+.++++.++..++
T Consensus 20 ~~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l 99 (117)
T 2byg_A 20 FQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAIL 99 (117)
T ss_dssp CEEEEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred cCCCceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 3345778899988889999999987542 35799999999999999933999999999999999999999999999
Q ss_pred HhCCCeEEEEEEECCc
Q psy12579 100 KQAQRSVKLVVRYTPK 115 (138)
Q Consensus 100 ~~~~~~v~l~v~r~~~ 115 (138)
+..+..+.|+|.|...
T Consensus 100 ~~~g~~v~l~v~R~~~ 115 (117)
T 2byg_A 100 KNTSEVVYLKVGKPTT 115 (117)
T ss_dssp HTCCSEEEEEEEEEEE
T ss_pred HcCCCeEEEEEEeCCc
Confidence 9888999999998753
No 32
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.69 E-value=1e-15 Score=98.01 Aligned_cols=86 Identities=30% Similarity=0.542 Sum_probs=77.6
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCC
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQR 104 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~ 104 (138)
.+.++|++.++..+|||++.++.+...+++|..|.++++|+++ | |+.||+|++|||..+.++++.++..+++. .+.
T Consensus 18 ~~~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~ 96 (123)
T 1ueq_A 18 GTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQD-GKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQ 96 (123)
T ss_dssp SEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHT-SCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTC
T ss_pred CcEEEEEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence 4667788999889999999987766678999999999999999 6 99999999999999999999999999988 468
Q ss_pred eEEEEEEECC
Q psy12579 105 SVKLVVRYTP 114 (138)
Q Consensus 105 ~v~l~v~r~~ 114 (138)
.+.|+|.|..
T Consensus 97 ~v~l~v~R~~ 106 (123)
T 1ueq_A 97 SVNLVLCRGY 106 (123)
T ss_dssp EEEEEEEESC
T ss_pred eEEEEEEeCC
Confidence 9999999875
No 33
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.69 E-value=5.8e-16 Score=95.23 Aligned_cols=87 Identities=30% Similarity=0.561 Sum_probs=77.5
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
.+.++|.+.++..+|||++.++.+.. .+++|..|.++|||+++ | |+.||.|++|||.++.++++.++..+++..+..
T Consensus 3 g~~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 81 (98)
T 2opg_A 3 GCETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKD-GRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQR 81 (98)
T ss_dssp CEEEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred CCEEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence 35678999999999999999876433 58999999999999999 6 999999999999999999999999999888889
Q ss_pred EEEEEEECCc
Q psy12579 106 VKLVVRYTPK 115 (138)
Q Consensus 106 v~l~v~r~~~ 115 (138)
+.|++.|++.
T Consensus 82 v~l~v~R~~~ 91 (98)
T 2opg_A 82 VRLTLYRDEA 91 (98)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEEcCCC
Confidence 9999998764
No 34
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.69 E-value=1.2e-15 Score=93.38 Aligned_cols=88 Identities=39% Similarity=0.665 Sum_probs=77.9
Q ss_pred CCCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 27 HAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 27 ~~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
..++++|.|.+++.+|||++.++.+. ..+++|..|.++|||+++ | |+.||.|++|||.++.++++.++..+++..
T Consensus 3 ~g~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 81 (96)
T 1d5g_A 3 PGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESD-GRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81 (96)
T ss_dssp TTCEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHT-TCCCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred CCCEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 34678899999999999999986542 358999999999999999 6 999999999999999999999999999888
Q ss_pred CCeEEEEEEECCc
Q psy12579 103 QRSVKLVVRYTPK 115 (138)
Q Consensus 103 ~~~v~l~v~r~~~ 115 (138)
+..+.|++.|++.
T Consensus 82 g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 82 GQVVHLLLEKGQS 94 (96)
T ss_dssp CSEEEEEEECCSC
T ss_pred CCeEEEEEEcCCC
Confidence 8899999988753
No 35
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.69 E-value=3.2e-16 Score=99.75 Aligned_cols=91 Identities=37% Similarity=0.586 Sum_probs=78.8
Q ss_pred cCCCCCcEEEEEecCC-CCcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12579 24 SEGHAHPRVVELPKTD-EGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l 99 (138)
...+..++.|.+.++. .+|||++.++.+ ...+++|..|.++|+|+++|.|+.||+|++|||.++.++++.++..++
T Consensus 19 ~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l 98 (118)
T 3b76_A 19 YFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALL 98 (118)
T ss_dssp CCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHH
T ss_pred ccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 3444677889998875 899999998753 345799999999999999933999999999999999999999999999
Q ss_pred HhCCCeEEEEEEECC
Q psy12579 100 KQAQRSVKLVVRYTP 114 (138)
Q Consensus 100 ~~~~~~v~l~v~r~~ 114 (138)
+..+..+.|+|.|..
T Consensus 99 ~~~~~~v~L~v~R~~ 113 (118)
T 3b76_A 99 KRTSSSIVLKALEVK 113 (118)
T ss_dssp HSCCSEEEEEEEEEE
T ss_pred HcCCCeEEEEEEECC
Confidence 999999999998753
No 36
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.69 E-value=9.4e-17 Score=97.60 Aligned_cols=86 Identities=29% Similarity=0.468 Sum_probs=74.3
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 107 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~ 107 (138)
+.+|+|.+.+++.+|||++.+... ..+++|..|.++|||+++ ||+.||.|++|||.++.++++.++..+++..+..+.
T Consensus 2 ~~pr~v~l~k~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~ 79 (91)
T 2vsp_A 2 MKPKLCRLAKGENGYGFHLNAIRG-LPGSFIKEVQKGGPADLA-GLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVT 79 (91)
T ss_dssp CCEEEEEEECBTTBTSCCCBCCTT-CSCCBC-CCCTTSHHHHT-TCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEE
T ss_pred CCcEEEEEEeCCCcccEEEEeccC-CCCeEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence 578999999998899999987543 357899999999999999 899999999999999998899999999988888999
Q ss_pred EEEEECCc
Q psy12579 108 LVVRYTPK 115 (138)
Q Consensus 108 l~v~r~~~ 115 (138)
|++.|...
T Consensus 80 l~v~r~~~ 87 (91)
T 2vsp_A 80 LLVCGKKA 87 (91)
T ss_dssp EEEEC---
T ss_pred EEEEeCCc
Confidence 99988753
No 37
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=4.6e-16 Score=96.41 Aligned_cols=88 Identities=34% Similarity=0.502 Sum_probs=78.5
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
+....+++|++.++..+|||++.+..+ ..+++|..|.++|||+.+ ||+.||+|++|||.++.++++.++..+++..+.
T Consensus 2 s~~~~~r~v~l~k~~~g~G~~l~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~ 79 (102)
T 2d90_A 2 SSGSSGRVVVIKKGSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGD 79 (102)
T ss_dssp CSCSSSEEEEEECCSSSSSCEEEECSS-SSSEEEECCCTTSTTTTT-TCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTT
T ss_pred CCCCCCEEEEEeeCCCCccEEEEeecC-CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 355688999999999999999997543 457999999999999999 899999999999999999989999999988889
Q ss_pred eEEEEEEECC
Q psy12579 105 SVKLVVRYTP 114 (138)
Q Consensus 105 ~v~l~v~r~~ 114 (138)
.+.|++.|..
T Consensus 80 ~v~l~v~r~~ 89 (102)
T 2d90_A 80 QTTLLVLDKE 89 (102)
T ss_dssp EEEEEECSTT
T ss_pred EEEEEEEECC
Confidence 9999998764
No 38
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.69 E-value=8.8e-16 Score=92.05 Aligned_cols=81 Identities=31% Similarity=0.525 Sum_probs=72.0
Q ss_pred EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEE
Q psy12579 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVK 107 (138)
Q Consensus 31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~ 107 (138)
.++++.++..+|||++.++.+...+++|..|.+++||+++ | |+.||.|++|||.++.++++.++..+++.. +..+.
T Consensus 2 ~~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~ 80 (85)
T 2i04_A 2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALD-GKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD 80 (85)
T ss_dssp EEEEEECBTTBSSEEEEECCSTTBCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEE
T ss_pred EEEEEEECCCCCCEEEEcccCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEE
Confidence 4688888889999999987665667999999999999999 6 999999999999999999999999999886 67888
Q ss_pred EEEEE
Q psy12579 108 LVVRY 112 (138)
Q Consensus 108 l~v~r 112 (138)
|++.|
T Consensus 81 l~v~R 85 (85)
T 2i04_A 81 LELCR 85 (85)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88864
No 39
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.69 E-value=5.5e-16 Score=94.76 Aligned_cols=86 Identities=36% Similarity=0.546 Sum_probs=75.9
Q ss_pred CCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 27 ~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
+..++.|++.++..+|||.+.++.. ..+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..+++..+..+
T Consensus 3 p~~~r~v~l~~~~~~~G~~l~~~~~-~~~~~V~~v~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~ 80 (95)
T 3r68_A 3 PHQPRVVVIKKGSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQT 80 (95)
T ss_dssp CCCCEEEEEECBTTBCSCEEEEC---CCSEEEECCCTTSHHHHH-TCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred CCCcEEEEEecCCCcccEEEEecCC-CCCEEEEEECCCCHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence 4678999999999999999987543 247999999999999999 89999999999999999999999999999988888
Q ss_pred EEEEEECC
Q psy12579 107 KLVVRYTP 114 (138)
Q Consensus 107 ~l~v~r~~ 114 (138)
.+++.+..
T Consensus 81 ~~~~~r~~ 88 (95)
T 3r68_A 81 TLLVLDKE 88 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEECCc
Confidence 88887764
No 40
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.69 E-value=4.8e-16 Score=98.65 Aligned_cols=92 Identities=29% Similarity=0.531 Sum_probs=80.4
Q ss_pred cCCCCCcEEEEEecCC-CCcCeEEeccCCC---------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHH
Q psy12579 24 SEGHAHPRVVELPKTD-EGLGFNVMGGKEQ---------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~~~---------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~ 93 (138)
...+..+++|.|.++. .+|||++.++.+. ..+++|..|.+++||+++|.|+.||+|++|||.++.++++.
T Consensus 10 ~~~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~ 89 (117)
T 2ehr_A 10 FSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHS 89 (117)
T ss_dssp SSCBCCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHH
T ss_pred cccCCCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 4566789999999985 7999999987642 35899999999999999933999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEECCc
Q psy12579 94 KAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 94 ~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
++..+++..+..+.|+|.|...
T Consensus 90 ~~~~~~~~~g~~v~l~v~r~~~ 111 (117)
T 2ehr_A 90 EAVEAIKNAGNPVVFIVQSLSS 111 (117)
T ss_dssp HHHHHHHTSCSSEEEEECCBSC
T ss_pred HHHHHHHcCCCeEEEEEEECCC
Confidence 9999999988999999987653
No 41
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.6e-16 Score=96.33 Aligned_cols=91 Identities=31% Similarity=0.524 Sum_probs=79.8
Q ss_pred cCCCCCcEEEEEecCCCCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579 24 SEGHAHPRVVELPKTDEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLK 100 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~ 100 (138)
+......+.+.+.+...+|||++.++.+. ..+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+++
T Consensus 6 ~~~~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~ 84 (104)
T 2djt_A 6 SGQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRC-GRLEVGDLVLHINGESTQGLTHAQAVERIR 84 (104)
T ss_dssp CCSCCCCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHH-CSCCTTCBEEEETTEECTTCCHHHHHHHHH
T ss_pred CCCCCceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 34456788999999889999999986543 467999999999999999 7 9999999999999999999999999998
Q ss_pred hCCCeEEEEEEECCc
Q psy12579 101 QAQRSVKLVVRYTPK 115 (138)
Q Consensus 101 ~~~~~v~l~v~r~~~ 115 (138)
..+..+.|+|.|+..
T Consensus 85 ~~g~~v~l~v~R~g~ 99 (104)
T 2djt_A 85 AGGPQLHLVIRRPLS 99 (104)
T ss_dssp HTCSEEEEEECCCCC
T ss_pred cCCCeEEEEEEECCC
Confidence 888899999988754
No 42
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.68 E-value=7.9e-16 Score=94.61 Aligned_cols=85 Identities=29% Similarity=0.499 Sum_probs=75.0
Q ss_pred CcEEEEEec-CCCCcCeEEeccCCCCC------CeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579 29 HPRVVELPK-TDEGLGFNVMGGKEQNS------PIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLK 100 (138)
Q Consensus 29 ~~~~v~l~~-~~~~~G~~l~~~~~~~~------~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~ 100 (138)
.+++|++.+ ...+|||++.++.+... +++|..|.++|||+++ | |+.||+|++|||.++.++++.++..+++
T Consensus 5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~a-G~L~~GD~I~~ing~~v~~~~~~~~~~~l~ 83 (98)
T 1ihj_A 5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLC-GRLKVGDRILSLNGKDVRNSTEQAVIDLIK 83 (98)
T ss_dssp EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHH-CSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred eEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence 467899998 66899999988765333 7999999999999999 7 9999999999999999999999999998
Q ss_pred hCCCeEEEEEEECC
Q psy12579 101 QAQRSVKLVVRYTP 114 (138)
Q Consensus 101 ~~~~~v~l~v~r~~ 114 (138)
..+..+.|++.|+.
T Consensus 84 ~~g~~v~l~v~R~g 97 (98)
T 1ihj_A 84 EADFKIELEIQTFD 97 (98)
T ss_dssp HSCSEEEEEEEEC-
T ss_pred cCCCeEEEEEEeCC
Confidence 88899999999874
No 43
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.68 E-value=1.9e-15 Score=91.70 Aligned_cols=86 Identities=33% Similarity=0.455 Sum_probs=74.9
Q ss_pred CCCcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 27 HAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 27 ~~~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
+.+.+.|++.+.. .+|||++.++.. ..+++|..|.++|||+++ ||+.||+|++|||..+.++.+.++..+++..+.
T Consensus 4 ~~~~~~v~l~k~~~~~~~G~~~~~~~~-~~gv~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~ 81 (91)
T 1m5z_A 4 PVELHKVTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLG-GLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGN 81 (91)
T ss_dssp CCEEEEEEEECCTTCSSSSEEEEECTT-SSCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT
T ss_pred CcceEEEEEEECCCCCCccEEEEeccC-CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 4567788998865 489999988653 367999999999999999 899999999999999999999888888888888
Q ss_pred eEEEEEEECC
Q psy12579 105 SVKLVVRYTP 114 (138)
Q Consensus 105 ~v~l~v~r~~ 114 (138)
.+.|++.|+|
T Consensus 82 ~v~l~v~R~p 91 (91)
T 1m5z_A 82 KLDLVISRNP 91 (91)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEeCc
Confidence 9999998864
No 44
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=6.5e-16 Score=98.45 Aligned_cols=88 Identities=39% Similarity=0.628 Sum_probs=78.5
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
..++.|.|.++..+|||++.++.+. ..+++|..|.++++|+++|.|+.||+|++||+..+.++++.++..+++..
T Consensus 16 ~~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~ 95 (120)
T 2eno_A 16 VTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 95 (120)
T ss_dssp EEEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH
T ss_pred CceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4678899999989999999987653 56899999999999999933999999999999999999999999999888
Q ss_pred CCeEEEEEEECCc
Q psy12579 103 QRSVKLVVRYTPK 115 (138)
Q Consensus 103 ~~~v~l~v~r~~~ 115 (138)
+..+.|+|.|++.
T Consensus 96 g~~v~l~v~R~~~ 108 (120)
T 2eno_A 96 GYAVSLRVQHRLQ 108 (120)
T ss_dssp CSEEEEEEEEEEE
T ss_pred CCeEEEEEEeCCc
Confidence 8899999998764
No 45
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-15 Score=96.39 Aligned_cols=91 Identities=31% Similarity=0.538 Sum_probs=80.2
Q ss_pred CCCcEEEEEecCCCCcCeEEeccCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 27 HAHPRVVELPKTDEGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 27 ~~~~~~v~l~~~~~~~G~~l~~~~~~-~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
..+.++|.+.++..+|||++.++.+. ..+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++..+..
T Consensus 23 ~~~~~~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~ 102 (124)
T 2daz_A 23 PGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSK 102 (124)
T ss_dssp SSEEEEEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSE
T ss_pred CCceEEEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 35678899999989999999987643 35899999999999999934999999999999999999999999999998889
Q ss_pred EEEEEEECCchH
Q psy12579 106 VKLVVRYTPKVL 117 (138)
Q Consensus 106 v~l~v~r~~~~~ 117 (138)
+.|+|.|+...+
T Consensus 103 v~l~v~R~~~~~ 114 (124)
T 2daz_A 103 VKLVFIRNEDAV 114 (124)
T ss_dssp EEEEEEECTTHH
T ss_pred EEEEEEeCCCcc
Confidence 999999987653
No 46
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.68 E-value=6.1e-16 Score=96.18 Aligned_cols=88 Identities=27% Similarity=0.508 Sum_probs=76.2
Q ss_pred CCCcEEEEEecCCCCcCeEEeccCCCCCCe-EEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh----
Q psy12579 27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPI-YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ---- 101 (138)
Q Consensus 27 ~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v-~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~---- 101 (138)
....+.|.+.+...+|||+|.++.+...++ +|..|.+++||+++|.|+.||+|++|||.++.+++|+++..+++.
T Consensus 4 g~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~ 83 (103)
T 1ufx_A 4 GSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKT 83 (103)
T ss_dssp CSSSEEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHC
T ss_pred CCceEEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhccc
Confidence 345788999988899999999987654454 999999999999994499999999999999999999999999987
Q ss_pred -CCCeEEEEEEECC
Q psy12579 102 -AQRSVKLVVRYTP 114 (138)
Q Consensus 102 -~~~~v~l~v~r~~ 114 (138)
.++.+.+++.|..
T Consensus 84 ~~~~~i~l~v~r~~ 97 (103)
T 1ufx_A 84 KDRDYIDFLVTEFN 97 (103)
T ss_dssp SSCSEEEEEECCCC
T ss_pred CCCCeEEEEEEEcc
Confidence 4678888888764
No 47
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.68 E-value=4.4e-16 Score=99.04 Aligned_cols=97 Identities=38% Similarity=0.706 Sum_probs=83.7
Q ss_pred ccCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 23 ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 23 ~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
.......+++|.|.+...+|||++.++.+ ..+++|..|.++|||+++ | |+.||+|++|||..+.++++.++..+++.
T Consensus 8 ~~~~~~~~~~v~l~k~~~glG~~l~~~~~-~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~ 85 (119)
T 1tp5_A 8 EEDIPREPRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLS-GELRKGDQILSVNGVDLRNASHEQAAIALKN 85 (119)
T ss_dssp GSCCCCSCEEEEEECTTSCCCEEEEECGG-GCCEEEEEECTTSHHHHH-SCCCTTEEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCCCCCccEEEEEEECCCCccEEEecCCC-CCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 34455789999999998899999998643 357999999999999999 7 99999999999999999999888888888
Q ss_pred CCCeEEEEEEECCchHHHHH
Q psy12579 102 AQRSVKLVVRYTPKVLEEME 121 (138)
Q Consensus 102 ~~~~v~l~v~r~~~~~~~~~ 121 (138)
.+..+.|++.|.+..+..++
T Consensus 86 ~~~~v~l~v~r~~~~~~~~~ 105 (119)
T 1tp5_A 86 AGQTVTIIAQYKPEEYSRFE 105 (119)
T ss_dssp SCSEEEEEEEECHHHHHTTS
T ss_pred CCCeEEEEEEECCchhcccc
Confidence 89999999999876554433
No 48
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.68 E-value=6e-16 Score=94.98 Aligned_cols=86 Identities=37% Similarity=0.692 Sum_probs=76.3
Q ss_pred CcEEEEEecCCCCcCeEEeccCCC----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
+...|++.++..+|||++.++.+. ..+++|..|.++|||+++ | |++||.|++|||.++.++++.++..+++..+
T Consensus 3 ~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~a-G~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g 81 (97)
T 2jil_A 3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADRE-GTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG 81 (97)
T ss_dssp EEEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred eEEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 356788888888999999987532 357999999999999999 7 9999999999999999999999999999888
Q ss_pred CeEEEEEEECCc
Q psy12579 104 RSVKLVVRYTPK 115 (138)
Q Consensus 104 ~~v~l~v~r~~~ 115 (138)
..+.|++.|++.
T Consensus 82 ~~v~l~v~R~~~ 93 (97)
T 2jil_A 82 QEAALLIEYDVS 93 (97)
T ss_dssp SEEEEEEEEECC
T ss_pred CeEEEEEEeCCC
Confidence 999999999764
No 49
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.68 E-value=1.2e-15 Score=92.99 Aligned_cols=85 Identities=32% Similarity=0.531 Sum_probs=75.1
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l 108 (138)
..+.|++.+.+.+|||++.+. +...+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++..++.+.|
T Consensus 4 ~~r~v~l~k~~~~lG~~i~~~-~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l 82 (93)
T 3o46_A 4 SVKIIRLVKNREPLGATIKKD-EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITF 82 (93)
T ss_dssp CCEEEEEEESSSCCCEEEEEC-TTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEE
T ss_pred cEEEEEEEeCCCCccEEEEec-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 568899999888999999875 3346799999999999999944999999999999999999999999999998888999
Q ss_pred EEEECC
Q psy12579 109 VVRYTP 114 (138)
Q Consensus 109 ~v~r~~ 114 (138)
++.+..
T Consensus 83 ~v~~~~ 88 (93)
T 3o46_A 83 KIIPGS 88 (93)
T ss_dssp EEECC-
T ss_pred EEEeCC
Confidence 988764
No 50
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.68 E-value=5.9e-16 Score=92.76 Aligned_cols=82 Identities=32% Similarity=0.511 Sum_probs=72.2
Q ss_pred EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110 (138)
Q Consensus 31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v 110 (138)
.+|++ +++.+|||++.++.+...+++|..|.++|||+++ ||+.||.|++|||.++.++++.++..+++..+..+.|++
T Consensus 3 ~~v~l-~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 80 (85)
T 1rgw_A 3 YSVTL-TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL 80 (85)
T ss_dssp EEEEE-CCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHS-SCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEE
T ss_pred EEEEE-eCCCccCEEEEeccCCCCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEE
Confidence 45777 4567899999987766668999999999999998 999999999999999999999999999988888899999
Q ss_pred EECC
Q psy12579 111 RYTP 114 (138)
Q Consensus 111 ~r~~ 114 (138)
.|+.
T Consensus 81 ~R~~ 84 (85)
T 1rgw_A 81 QKSK 84 (85)
T ss_dssp ESCC
T ss_pred EeCC
Confidence 8764
No 51
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.6e-16 Score=94.39 Aligned_cols=86 Identities=30% Similarity=0.458 Sum_probs=75.8
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 107 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~ 107 (138)
..++.|++ ++..+|||.+.++.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++..+..+.
T Consensus 7 ~~~~~v~l-~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~ 84 (94)
T 2eeg_A 7 GMPHSVTL-RGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALA-ALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLT 84 (94)
T ss_dssp CCCEEEEE-CCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHT-TCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEE
T ss_pred CceEEEEE-eCCCccCEEEECccCCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence 45677888 4557899999998776678999999999999999 899999999999999999999999988888888999
Q ss_pred EEEEECCc
Q psy12579 108 LVVRYTPK 115 (138)
Q Consensus 108 l~v~r~~~ 115 (138)
|+|.|+..
T Consensus 85 l~v~R~g~ 92 (94)
T 2eeg_A 85 LSVSSGPS 92 (94)
T ss_dssp EEEECCSS
T ss_pred EEEEeCCC
Confidence 99988753
No 52
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=95.22 Aligned_cols=82 Identities=30% Similarity=0.537 Sum_probs=73.9
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 107 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~ 107 (138)
+.+++|++.++..+|||++.+. .+++|..|.+++||+++ ||+.||.|++|||.++.++++.++..+++..+..+.
T Consensus 1 ~~~r~v~l~~~~~g~G~~~~~~----~~~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~ 75 (83)
T 2kv8_A 1 PRVRSVEVARGRAGYGFTLSGQ----APCVLSCVMRGSPADFV-GLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLH 75 (83)
T ss_dssp CCEEEEEECCCSSCCSCBCCCS----SSCBCCBCCTTSTTTTT-TCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEE
T ss_pred CCcEEEEEEeCCCcccEEEEcC----CCeEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence 4678999999999999998763 46999999999999999 899999999999999999999999999988778899
Q ss_pred EEEEECC
Q psy12579 108 LVVRYTP 114 (138)
Q Consensus 108 l~v~r~~ 114 (138)
|++.|++
T Consensus 76 l~v~R~~ 82 (83)
T 2kv8_A 76 MVIAEGV 82 (83)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998875
No 53
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.68 E-value=7.4e-16 Score=96.86 Aligned_cols=88 Identities=36% Similarity=0.704 Sum_probs=78.5
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
..+..++.|.+.+...+|||.+.++. +.+++|..|.++++|+++ | |+.||+|++|||..+.++++.++..+++..+
T Consensus 11 ~~~~~~~~v~l~~~~~~lG~~l~~~~--~~g~~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g 87 (111)
T 2dlu_A 11 VCWGHVEEVELINDGSGLGFGIVGGK--TSGVVVRTIVPGGLADRD-GRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG 87 (111)
T ss_dssp CSCSEEEEEEEECCSSCCCEEEECCS--SSSBEEEEECTTSSHHHH-TCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHC
T ss_pred cCcCceEEEEEEeCCCccCEEEeccC--CCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 44567788999998899999999764 357999999999999999 6 9999999999999999999999999998888
Q ss_pred CeEEEEEEECCc
Q psy12579 104 RSVKLVVRYTPK 115 (138)
Q Consensus 104 ~~v~l~v~r~~~ 115 (138)
..+.|+|.|++.
T Consensus 88 ~~v~l~v~R~~~ 99 (111)
T 2dlu_A 88 NSVRMLVARDPA 99 (111)
T ss_dssp SEEEEEEEESCT
T ss_pred CeEEEEEEeCCC
Confidence 899999998763
No 54
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.67 E-value=2.6e-15 Score=94.16 Aligned_cols=90 Identities=29% Similarity=0.510 Sum_probs=79.3
Q ss_pred CCCCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 26 GHAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
...+.++|++.++..+|||++.++.+. ..+++|..|.+++||+++ | |+.||+|++|||.++.++++.++..+++.
T Consensus 5 ~~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~ 83 (110)
T 1um1_A 5 SSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAAD-GRLSLGDRILEVNGSSLLGLGYLRAVDLIRH 83 (110)
T ss_dssp SCCCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHH-SCCCTTCEEEEESSCBCSSCCHHHHHHHHHT
T ss_pred CCCcEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 345778899999889999999986542 357999999999999999 6 99999999999999999999999999998
Q ss_pred CCCeEEEEEEECCch
Q psy12579 102 AQRSVKLVVRYTPKV 116 (138)
Q Consensus 102 ~~~~v~l~v~r~~~~ 116 (138)
.+..+.|+|.|+...
T Consensus 84 ~~~~v~l~v~R~~~~ 98 (110)
T 1um1_A 84 GGKKMRFLVAKSDVE 98 (110)
T ss_dssp CCSEEEEEEECCCHH
T ss_pred CCCeEEEEEEeCCcc
Confidence 889999999998643
No 55
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.67 E-value=1.9e-15 Score=92.20 Aligned_cols=85 Identities=31% Similarity=0.538 Sum_probs=74.9
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
.....+|+|.+.++..+|||.+.+ ..+++|..|.+++||+++ ||+.||+|++|||.++.++.+.++...++ .+.
T Consensus 4 ~~~~~~r~v~l~~~~~~~G~~l~~----~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~ 77 (93)
T 2dls_A 4 GSSGVQRCVIIQKDQHGFGFTVSG----DRIVLVQSVRPGGAAMKA-GVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGA 77 (93)
T ss_dssp CCCCCEEEEEEECSSSSCCEEEEC----SSSCEEEEECSSSTTTTT-TCCSSCEEEEETTEECSSSCHHHHHHHHT-SSS
T ss_pred CCCCCCEEEEEEeCCCceeEEEeC----CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHhhc-CCC
Confidence 445678999999999999999986 357999999999999999 89999999999999999998888888776 688
Q ss_pred eEEEEEEECCc
Q psy12579 105 SVKLVVRYTPK 115 (138)
Q Consensus 105 ~v~l~v~r~~~ 115 (138)
.+.|+|.|++.
T Consensus 78 ~v~l~v~R~~~ 88 (93)
T 2dls_A 78 YVALTLLGSSS 88 (93)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEEEECCC
Confidence 99999998753
No 56
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.67 E-value=2.8e-15 Score=96.15 Aligned_cols=89 Identities=21% Similarity=0.372 Sum_probs=78.1
Q ss_pred CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
..++++++.+.. .+|||++.++.+...+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++..++.+
T Consensus 18 ~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v 97 (125)
T 3hpk_A 18 TVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEV 97 (125)
T ss_dssp EEEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEE
T ss_pred CCCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 467888898866 6899999998766678999999999999999339999999999999999999999999999998889
Q ss_pred EEEEEECCch
Q psy12579 107 KLVVRYTPKV 116 (138)
Q Consensus 107 ~l~v~r~~~~ 116 (138)
.+++.|....
T Consensus 98 ~l~v~r~~~~ 107 (125)
T 3hpk_A 98 TIHYNKLQAD 107 (125)
T ss_dssp EEEEEEECSC
T ss_pred EEEEEECCCC
Confidence 9999885443
No 57
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.67 E-value=7.8e-16 Score=96.62 Aligned_cols=89 Identities=30% Similarity=0.549 Sum_probs=76.0
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
......+.|++.++ .+|||++.++.+. ..+++|..|.++++|+++|.|+.||+|++|||.++.++++.++..+++..
T Consensus 11 ~~~~~~~~v~l~k~-~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~ 89 (109)
T 1wi4_A 11 DRDPAFRVITVTKE-TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA 89 (109)
T ss_dssp CCCTTEEEEEECCS-SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHS
T ss_pred CCCCcEEEEEEeCC-CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcc
Confidence 44467788999886 8999999987653 33699999999999999944999999999999999999999999999886
Q ss_pred C----CeEEEEEEECC
Q psy12579 103 Q----RSVKLVVRYTP 114 (138)
Q Consensus 103 ~----~~v~l~v~r~~ 114 (138)
. ..+.+.+.|+.
T Consensus 90 ~~r~~~~~~l~v~R~~ 105 (109)
T 1wi4_A 90 KLRSESPWEIAFIRSG 105 (109)
T ss_dssp CCSSSSCEEEEEECCC
T ss_pred ccCCCceEEEEEEeCC
Confidence 4 67888888864
No 58
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.67 E-value=8.9e-16 Score=92.81 Aligned_cols=83 Identities=24% Similarity=0.463 Sum_probs=72.9
Q ss_pred cEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579 30 PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108 (138)
Q Consensus 30 ~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l 108 (138)
.|.|+|.|+. .+|||++.+.. ..+++|..|.++|||+++++|+.||.|++|||.++.+++++++..+++.....+.|
T Consensus 2 ~r~V~l~K~~~~~lG~~i~~~~--~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l 79 (88)
T 1kwa_A 2 SRLVQFQKNTDEPMGITLKMNE--LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF 79 (88)
T ss_dssp CEEEEEEECSSSCCCEEEECSC--GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEE
T ss_pred eEEEEEEeCCCCceeEEEEeCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEE
Confidence 5789999985 88999998742 35699999999999999559999999999999999999999999999987668888
Q ss_pred EEEECC
Q psy12579 109 VVRYTP 114 (138)
Q Consensus 109 ~v~r~~ 114 (138)
++.|..
T Consensus 80 ~v~r~~ 85 (88)
T 1kwa_A 80 KIVPSY 85 (88)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 888764
No 59
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.67 E-value=6.7e-16 Score=98.04 Aligned_cols=89 Identities=27% Similarity=0.536 Sum_probs=77.3
Q ss_pred CCcEEEEEecCC-------CCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579 28 AHPRVVELPKTD-------EGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA 95 (138)
Q Consensus 28 ~~~~~v~l~~~~-------~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~ 95 (138)
...+.+++.+.. .+|||+|.++.+. ..+++|..|.++++|+++|.|+.||+|++|||.++.++++.++
T Consensus 11 ~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~ 90 (117)
T 1ujd_A 11 FPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEV 90 (117)
T ss_dssp SCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHH
T ss_pred CceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHH
Confidence 456778888876 7899999987642 2369999999999999993399999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEECCch
Q psy12579 96 VELLKQAQRSVKLVVRYTPKV 116 (138)
Q Consensus 96 ~~~l~~~~~~v~l~v~r~~~~ 116 (138)
..+++..+..+.|+|.|++..
T Consensus 91 ~~~l~~~~~~v~l~v~R~~~~ 111 (117)
T 1ujd_A 91 QSIISQQSGEAEICVRLDLNM 111 (117)
T ss_dssp HHHHSCCSSCEEEEEESSCCC
T ss_pred HHHHhcCCCEEEEEEEECCcc
Confidence 999999889999999998754
No 60
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.66 E-value=1.2e-15 Score=95.46 Aligned_cols=92 Identities=37% Similarity=0.628 Sum_probs=79.9
Q ss_pred cCCCCCcEEEEEecCCCCcCeEEe-----ccCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579 24 SEGHAHPRVVELPKTDEGLGFNVM-----GGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA 95 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~~~~G~~l~-----~~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~ 95 (138)
+..+.+.++|.|.+++.+|||++. ++.+. ..+++|..|.++|||+++|.|+.||.|++|||..+.++++.++
T Consensus 4 p~~~~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~ 83 (108)
T 1q7x_A 4 PPKPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 83 (108)
T ss_dssp CCCSSSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHH
T ss_pred CCCCCcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 345567889999999999999999 65432 4689999999999999993399999999999999998899999
Q ss_pred HHHHHhCCCeEEEEEEECCc
Q psy12579 96 VELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 96 ~~~l~~~~~~v~l~v~r~~~ 115 (138)
..+++..+..+.|++.|+..
T Consensus 84 ~~~~~~~g~~v~l~v~R~~~ 103 (108)
T 1q7x_A 84 VETLRNTGQVVHLLLEKGQS 103 (108)
T ss_dssp HHHHHHTTSEEEEEEECCCC
T ss_pred HHHHHcCCCeEEEEEEeCCc
Confidence 99999999999999998764
No 61
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.66 E-value=1.2e-15 Score=95.11 Aligned_cols=91 Identities=33% Similarity=0.536 Sum_probs=75.7
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
+...+..+|++ ++..+|||++.++.+ ...+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++.
T Consensus 7 ~~~~~~~~v~l-~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~ 85 (106)
T 3axa_A 7 HKEPEIITVTL-KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR 85 (106)
T ss_dssp ---CCEEEEEE-ECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CCCceEEEEEE-CCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 34456666777 778899999987532 24579999999999999993399999999999999999999999999988
Q ss_pred CCCeEEEEEEECCch
Q psy12579 102 AQRSVKLVVRYTPKV 116 (138)
Q Consensus 102 ~~~~v~l~v~r~~~~ 116 (138)
.+..+.|++.|+...
T Consensus 86 ~g~~v~l~v~R~~~~ 100 (106)
T 3axa_A 86 TSSVVTLEVAKQGAI 100 (106)
T ss_dssp CCSEEEEEEECCCSS
T ss_pred CCCeEEEEEEeCCcc
Confidence 999999999998654
No 62
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.66 E-value=5e-16 Score=98.50 Aligned_cols=92 Identities=35% Similarity=0.563 Sum_probs=79.8
Q ss_pred cCCCCCcEEEEEecCC-CCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCC-CCCHHHHHH
Q psy12579 24 SEGHAHPRVVELPKTD-EGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVE-GEDHGKAVE 97 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~-~~~~~~~~~ 97 (138)
......++.|.+.+.. .+|||++.++.+. ..+++|..|.++|||+++ | |+.||+|++|||.++. ++++.++..
T Consensus 15 ~~~~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~a-G~l~~GD~Il~ing~~v~~~~~~~~~~~ 93 (117)
T 2o2t_A 15 MAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRD-GRLKETDQILAINGQALDQTITHQQAIS 93 (117)
T ss_dssp HHTTSCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHH-CCCCTTCEEEEETTEECCTTSCHHHHHH
T ss_pred hccCCeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCCHHHHHH
Confidence 3445688999999974 7899999876532 357999999999999999 6 9999999999999998 889999999
Q ss_pred HHHhCCCeEEEEEEECCch
Q psy12579 98 LLKQAQRSVKLVVRYTPKV 116 (138)
Q Consensus 98 ~l~~~~~~v~l~v~r~~~~ 116 (138)
+++..+..+.|++.|++..
T Consensus 94 ~l~~~~~~v~l~v~R~~~~ 112 (117)
T 2o2t_A 94 ILQKAKDTVQLVIARGSLP 112 (117)
T ss_dssp HHHHCCSEEEEEEESSCCG
T ss_pred HHHcCCCEEEEEEEeCCcc
Confidence 9999999999999998653
No 63
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=92.58 Aligned_cols=84 Identities=30% Similarity=0.446 Sum_probs=73.0
Q ss_pred cEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109 (138)
Q Consensus 30 ~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 109 (138)
+.++++. ++.+|||++.++.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++..+..+.|+
T Consensus 4 ~~~v~~~-~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~ 81 (89)
T 2q3g_A 4 SFKVVLE-GPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQA-GVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLG 81 (89)
T ss_dssp EEEEEEE-SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHT-TCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEE
T ss_pred EEEEEEc-CCCcccEEEECcCCCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence 4456665 457899999987765667999999999999999 89999999999999999999999999998888899999
Q ss_pred EEECCc
Q psy12579 110 VRYTPK 115 (138)
Q Consensus 110 v~r~~~ 115 (138)
+.|+..
T Consensus 82 v~R~~~ 87 (89)
T 2q3g_A 82 LSRAIT 87 (89)
T ss_dssp EEEECC
T ss_pred EEeCCC
Confidence 988753
No 64
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.66 E-value=1e-15 Score=95.62 Aligned_cols=91 Identities=27% Similarity=0.550 Sum_probs=77.9
Q ss_pred CCCCCcEEEEEecCCCCcCeEEec---cCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~---~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~ 98 (138)
+...+.+.|.|.+...+|||++.+ +.+ ...+++|..|.+++||+++|.|+.||+|++|||.++.++++.++..+
T Consensus 5 ~~~~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~ 84 (107)
T 1wf8_A 5 SSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATV 84 (107)
T ss_dssp CCCEEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHH
T ss_pred cCCceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 444667789999888999999998 332 13479999999999999993399999999999999999999999999
Q ss_pred HHhCCCeEEEEEEECCc
Q psy12579 99 LKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 99 l~~~~~~v~l~v~r~~~ 115 (138)
++..+..+.|+|.|...
T Consensus 85 ~~~~~~~v~l~v~R~~~ 101 (107)
T 1wf8_A 85 LRNTKGNVRFVIGREKP 101 (107)
T ss_dssp HHHCCSEEEEEEEEECC
T ss_pred HhcCCCeEEEEEEeCCC
Confidence 99999999999988753
No 65
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.66 E-value=4.4e-16 Score=98.07 Aligned_cols=95 Identities=42% Similarity=0.741 Sum_probs=83.5
Q ss_pred CCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 26 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
...+++.|++.+...+|||++.++.+ ..+++|..|.++++|+++ | |+.||+|++||+.++.++++.++..+++..+.
T Consensus 12 ~~~~~~~v~l~k~~~glG~~l~~~~~-~~gv~V~~V~~~s~A~~a-G~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~ 89 (113)
T 1um7_A 12 DAREPRKIILHKGSTGLGFNIVGGED-GEGIFVSFILAGGPADLS-GELRRGDRILSVNGVNLRNATHEQAAAALKRAGQ 89 (113)
T ss_dssp CCCSEEEEEEECCSSCSSBCCBCCST-TCCCBCCCBCSSSHHHHT-TCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCS
T ss_pred CCCceEEEEEEECCCcccEEEEeccC-CCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 34688999999988999999988654 467999999999999999 7 99999999999999999999999999988889
Q ss_pred eEEEEEEECCchHHHHHH
Q psy12579 105 SVKLVVRYTPKVLEEMEM 122 (138)
Q Consensus 105 ~v~l~v~r~~~~~~~~~~ 122 (138)
.+.|++.|++..+..+..
T Consensus 90 ~v~l~v~r~~~~~~~~~~ 107 (113)
T 1um7_A 90 SVTIVAQYRPEEYSRFES 107 (113)
T ss_dssp EEEEEEECCHHHHHHHHH
T ss_pred cEEEEEEECcchhhhhhc
Confidence 999999999877666544
No 66
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.66 E-value=7.3e-16 Score=98.05 Aligned_cols=87 Identities=30% Similarity=0.528 Sum_probs=77.0
Q ss_pred CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhc-CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRH-GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-- 103 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~-~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~-- 103 (138)
...++|++.++. .+|||++.++.+...+++|..|.++|||+++ ++|+.||+|++|||.++.++++.++..+++..+
T Consensus 14 ~~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~ 93 (119)
T 2cs5_A 14 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCER 93 (119)
T ss_dssp SCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHC
T ss_pred CCeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccc
Confidence 567889999977 4599999988765667999999999999998 799999999999999999999999999998874
Q ss_pred --CeEEEEEEECC
Q psy12579 104 --RSVKLVVRYTP 114 (138)
Q Consensus 104 --~~v~l~v~r~~ 114 (138)
..+.|+|.|+.
T Consensus 94 ~~~~v~l~v~R~~ 106 (119)
T 2cs5_A 94 HSGELMLLVRPNA 106 (119)
T ss_dssp CSSCEEEEEECCC
T ss_pred CCCEEEEEEEccc
Confidence 48999998874
No 67
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.66 E-value=2.2e-15 Score=90.69 Aligned_cols=77 Identities=26% Similarity=0.512 Sum_probs=69.5
Q ss_pred cCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12579 37 KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114 (138)
Q Consensus 37 ~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 114 (138)
+++.+|||++.++.+...+++|..|.++|||+++ ||+.||.|++|||.++.++++.++..+++..+..+.|++.|+.
T Consensus 9 ~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 85 (87)
T 2pa1_A 9 AGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDA-DLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRIT 85 (87)
T ss_dssp CSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHT-TCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEECC
T ss_pred CCCCccCEEEecccCCCCCEEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecC
Confidence 3557899999987765568999999999999998 9999999999999999999999999999988788999999875
No 68
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.65 E-value=1.3e-15 Score=95.04 Aligned_cols=85 Identities=31% Similarity=0.542 Sum_probs=75.4
Q ss_pred CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC--CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG--LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g--l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
...+.+.+.++. .+|||.+.++.+...+++|..|.++++|+++ | |+.||+|++|||.++.++++.++..+++..+.
T Consensus 16 ~~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~a-G~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~ 94 (107)
T 3nfk_A 16 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLC-VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCE 94 (107)
T ss_dssp CCCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHS-SSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGG
T ss_pred CCEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHc-CCccCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence 567889998877 7899999987765567999999999999999 6 99999999999999999999999999988764
Q ss_pred ----eEEEEEEEC
Q psy12579 105 ----SVKLVVRYT 113 (138)
Q Consensus 105 ----~v~l~v~r~ 113 (138)
.+.|+|.|+
T Consensus 95 ~~~~~v~l~v~r~ 107 (107)
T 3nfk_A 95 RHSGELMLLVRPN 107 (107)
T ss_dssp SBTTBEEEEEECC
T ss_pred cCCcEEEEEEEcC
Confidence 899998874
No 69
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.2e-16 Score=95.64 Aligned_cols=87 Identities=30% Similarity=0.483 Sum_probs=77.6
Q ss_pred CCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 26 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
.+..+|+|.|.+++.+|||++.+... ..+++|..|.+++||+++ ||+.||.|++|||.++.++++.++..+++..+..
T Consensus 5 ~~~~~r~v~l~k~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 82 (106)
T 2eei_A 5 SSGQPRLCYLVKEGGSYGFSLKTVQG-KKGVYMTDITPQGVAMRA-GVLADDHLIEVNGENVEDASHEEVVEKVKKSGSR 82 (106)
T ss_dssp CCSSSEEEEEECCSSSCSCCEECCSS-CCSCEECCCCTTSHHHHH-TCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSE
T ss_pred CCCCCEEEEEEECCCCCCEEEEeccC-CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence 46789999999988999999986543 457999999999999999 8999999999999999999999999999888889
Q ss_pred EEEEEEECC
Q psy12579 106 VKLVVRYTP 114 (138)
Q Consensus 106 v~l~v~r~~ 114 (138)
+.+++.|..
T Consensus 83 v~l~v~r~~ 91 (106)
T 2eei_A 83 VMFLLVDKE 91 (106)
T ss_dssp EEEEECCTT
T ss_pred EEEEEEcCc
Confidence 999998765
No 70
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.65 E-value=4.1e-15 Score=90.36 Aligned_cols=85 Identities=33% Similarity=0.588 Sum_probs=74.8
Q ss_pred CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
.+..+|++.+.. .+|||++.++.+ ..+++|..|.++|||+++ | |+.||.|++|||.++.+.++.++..+++..+..
T Consensus 3 ~~~~~v~l~k~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 80 (92)
T 2qg1_A 3 SDTLTIGLQKKPGKGLGLSIVGKRN-DTGVFVSDIVKGGIADAD-GRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGT 80 (92)
T ss_dssp -CEEEEEEECCTTSCCSEEEECCSS-SCSCEEEEECTTSHHHHH-TCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred ceEEEEEEEeCCCCcccEEEEeccC-CCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 356789998864 789999988654 468999999999999999 6 999999999999999999999999999988899
Q ss_pred EEEEEEECC
Q psy12579 106 VKLVVRYTP 114 (138)
Q Consensus 106 v~l~v~r~~ 114 (138)
+.|++.|..
T Consensus 81 v~l~v~R~~ 89 (92)
T 2qg1_A 81 VTLEVGRIS 89 (92)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccc
Confidence 999998875
No 71
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-15 Score=91.87 Aligned_cols=92 Identities=29% Similarity=0.426 Sum_probs=76.5
Q ss_pred cCCCCCcEEEEEecCC-CCcCeEEeccCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579 24 SEGHAHPRVVELPKTD-EGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~~--~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~ 100 (138)
.+.....+.|++.+.. .+|||++..... ...+++|..|.+++||+++++|+.||+|++|||.++.+.++.++..+++
T Consensus 4 ~~~~~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~ 83 (101)
T 2yt7_A 4 GSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVR 83 (101)
T ss_dssp CSTTCCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred CCCCCceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3445677889998755 789999975221 1226999999999999997689999999999999999999999999998
Q ss_pred h--CCCeEEEEEEECCc
Q psy12579 101 Q--AQRSVKLVVRYTPK 115 (138)
Q Consensus 101 ~--~~~~v~l~v~r~~~ 115 (138)
. .+..+.|+|.|.++
T Consensus 84 ~~~~g~~v~l~v~R~~p 100 (101)
T 2yt7_A 84 ETKSQTSVTLSIVHCPP 100 (101)
T ss_dssp HTTTSSEEEEEECCCCC
T ss_pred hCCCCCeEEEEEEeCCC
Confidence 8 67899999988764
No 72
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.65 E-value=1.3e-15 Score=98.55 Aligned_cols=106 Identities=26% Similarity=0.398 Sum_probs=79.9
Q ss_pred CCChhhhHHHhhhhccCCCCCcEEEEEecC----------CCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCC
Q psy12579 9 RASATAKATVAAFAASEGHAHPRVVELPKT----------DEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKR 75 (138)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~----------~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~ 75 (138)
.++..++.++.-............+.+.+. ..+|||++.++.+. ..+++|..|.++++|+++|.|+.
T Consensus 7 ~~~~~~~~p~~~~~~~~~~~~i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~ 86 (131)
T 1wfg_A 7 GHSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRP 86 (131)
T ss_dssp CCCCSCCCSCEEEECSSSSEEEEEEEEECSCTTSCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCT
T ss_pred CCCCCCCCCCcccCCCCCCceeeEEEEeccceeEEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCC
Confidence 334444444433333333444455666654 46899999886543 23799999999999999933999
Q ss_pred CCEEEEECCeeCCCCCHHHHHHHHHhCC--CeEEEEEEECC
Q psy12579 76 GDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSVKLVVRYTP 114 (138)
Q Consensus 76 gD~i~~ing~~v~~~~~~~~~~~l~~~~--~~v~l~v~r~~ 114 (138)
||+|++|||..+.++++.++..+++..+ ..+.|+|.|+.
T Consensus 87 GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 127 (131)
T 1wfg_A 87 GDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127 (131)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence 9999999999999999999999998864 88999998864
No 73
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.65 E-value=1.9e-15 Score=97.49 Aligned_cols=87 Identities=29% Similarity=0.459 Sum_probs=76.7
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~ 105 (138)
.+..+|++.++..+|||++.++.+...+++|..|.++|+|+++|.|+.||+|++|||..+.++++.++..+++.. +..
T Consensus 17 g~~~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~ 96 (129)
T 2kpk_A 17 GKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS 96 (129)
T ss_dssp SEEEEEEEEECSSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEE
T ss_pred CcEEEEEEEECCCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence 456678899988999999998765556799999999999999933999999999999999999999999999887 678
Q ss_pred EEEEEEECC
Q psy12579 106 VKLVVRYTP 114 (138)
Q Consensus 106 v~l~v~r~~ 114 (138)
+.|+|.|..
T Consensus 97 v~l~v~R~~ 105 (129)
T 2kpk_A 97 VDLELCRGY 105 (129)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEeCC
Confidence 999999875
No 74
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=97.69 Aligned_cols=91 Identities=31% Similarity=0.565 Sum_probs=79.2
Q ss_pred CCCCCcEEEEEecCC-CCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCC-CCCHHHHHHHH
Q psy12579 25 EGHAHPRVVELPKTD-EGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE-GEDHGKAVELL 99 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~-~~~~~~~~~~l 99 (138)
.....++.|.+.++. .+|||++.++.+. ..+++|..|.+++||+++|.|+.||+|++|||.++. ++++.++..++
T Consensus 21 ~~~~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l 100 (128)
T 2db5_A 21 AQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALL 100 (128)
T ss_dssp HTTCEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHH
T ss_pred cccCceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHH
Confidence 446678899999986 6999999876543 237999999999999999339999999999999997 99999999999
Q ss_pred HhCCCeEEEEEEECCc
Q psy12579 100 KQAQRSVKLVVRYTPK 115 (138)
Q Consensus 100 ~~~~~~v~l~v~r~~~ 115 (138)
+..+..+.|+|.|.+.
T Consensus 101 ~~~~~~v~l~v~r~~~ 116 (128)
T 2db5_A 101 QQTTGSLRLIVAREPV 116 (128)
T ss_dssp HHCCSEEEEEEEECCC
T ss_pred HcCCCeEEEEEEcCCC
Confidence 9999999999999863
No 75
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.65 E-value=6.2e-15 Score=90.12 Aligned_cols=85 Identities=25% Similarity=0.445 Sum_probs=74.6
Q ss_pred CcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 29 HPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 29 ~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
+...|.|.+.. .+|||++.++.+ ..+++|..|.++|||+++ | |++||.|++|||.++.++++.++...++..+..
T Consensus 3 ~~~~v~l~k~~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~ 80 (95)
T 2vwr_A 3 EILQVALHKRDSGEQLGIKLVRRTD-EPGVFILDLLEGGLAAQD-GRLSSNDRVLAINGHDLKYGTPELAAQIIQASGER 80 (95)
T ss_dssp EEEEEEEECSSTTCCCCEEEEECSS-SCSEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred EEEEEEEEECCCCCcccEEEEeccC-CCCEEEEEeCCCChHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence 45678898853 689999987654 457999999999999999 6 999999999999999999999999999988999
Q ss_pred EEEEEEECCc
Q psy12579 106 VKLVVRYTPK 115 (138)
Q Consensus 106 v~l~v~r~~~ 115 (138)
+.|++.|+..
T Consensus 81 v~l~v~R~~~ 90 (95)
T 2vwr_A 81 VNLTIARPGK 90 (95)
T ss_dssp EEEEEEEESC
T ss_pred EEEEEEcCCc
Confidence 9999998754
No 76
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.64 E-value=1.6e-15 Score=95.04 Aligned_cols=87 Identities=28% Similarity=0.446 Sum_probs=74.8
Q ss_pred CCcEEEEEecC-CCCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--
Q psy12579 28 AHPRVVELPKT-DEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-- 102 (138)
Q Consensus 28 ~~~~~v~l~~~-~~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-- 102 (138)
..+++|.|.+. ..+|||++.++.+. ..+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++..
T Consensus 4 ~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~ 83 (108)
T 3cbz_A 4 MNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVH 83 (108)
T ss_dssp CCEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHT
T ss_pred ceEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence 36788999874 48899999987543 46799999999999999944999999999999999999999999999876
Q ss_pred -CCeEEEEEEECC
Q psy12579 103 -QRSVKLVVRYTP 114 (138)
Q Consensus 103 -~~~v~l~v~r~~ 114 (138)
+..+.|+|.|..
T Consensus 84 ~~~~v~l~v~R~~ 96 (108)
T 3cbz_A 84 KPGPIVLTVAKSG 96 (108)
T ss_dssp SSSCEEEEEECCC
T ss_pred CCCeEEEEEEeCC
Confidence 457999998864
No 77
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.64 E-value=3.7e-15 Score=100.41 Aligned_cols=89 Identities=28% Similarity=0.512 Sum_probs=77.1
Q ss_pred CCCCCcEEEEEecCCCCcCeEEec---cCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMG---GKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~---~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~ 98 (138)
....+...|.+.++..+|||+|.+ +.+. ..+++|..|.+++||+++|.|+.||+|++|||..+.++++.++..+
T Consensus 76 ~~~~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~ 155 (170)
T 3egg_C 76 VERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASV 155 (170)
T ss_dssp HTTSEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHH
T ss_pred cCCceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 344566778999888999999998 3221 3569999999999999994499999999999999999999999999
Q ss_pred HHhCCCeEEEEEEEC
Q psy12579 99 LKQAQRSVKLVVRYT 113 (138)
Q Consensus 99 l~~~~~~v~l~v~r~ 113 (138)
++..+..+.|+|.|+
T Consensus 156 l~~~g~~v~L~V~R~ 170 (170)
T 3egg_C 156 LRNTKGRVRFMIGRE 170 (170)
T ss_dssp HHHCCSEEEEEEEEC
T ss_pred HHcCCCEEEEEEEeC
Confidence 999999999999884
No 78
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.64 E-value=3.7e-15 Score=94.60 Aligned_cols=88 Identities=36% Similarity=0.516 Sum_probs=77.5
Q ss_pred CCCcEEEEEecCC-CCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 27 HAHPRVVELPKTD-EGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 27 ~~~~~~v~l~~~~-~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
...++.|.|.+.. .+|||++.++.+.. .+++|..|.++++|+++|.|++||+|++|||..+.++++.++..+++..+.
T Consensus 13 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~ 92 (117)
T 1v62_A 13 ASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISE 92 (117)
T ss_dssp SSSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSS
T ss_pred CCCcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 4578899999977 79999999875433 349999999999999994499999999999999999999999999998889
Q ss_pred eEEEEEEECC
Q psy12579 105 SVKLVVRYTP 114 (138)
Q Consensus 105 ~v~l~v~r~~ 114 (138)
.+.|+|.|..
T Consensus 93 ~v~l~v~r~~ 102 (117)
T 1v62_A 93 KVRLEILPVP 102 (117)
T ss_dssp EEEEEECCBT
T ss_pred eEEEEEEECC
Confidence 9999998875
No 79
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.64 E-value=3.2e-15 Score=93.33 Aligned_cols=81 Identities=40% Similarity=0.676 Sum_probs=69.2
Q ss_pred EecCCCCcCeEEeccCCCC-----CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579 35 LPKTDEGLGFNVMGGKEQN-----SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109 (138)
Q Consensus 35 l~~~~~~~G~~l~~~~~~~-----~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 109 (138)
+..+..+|||++.+|.+.. .+++|..|.++|||+++|.|+.||+|++|||..+.++++.++..+++..+..+.|+
T Consensus 8 ~~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 87 (106)
T 4amh_A 8 VPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLK 87 (106)
T ss_dssp ----CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEE
T ss_pred CCCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Confidence 3446689999999987543 37999999999999999339999999999999999999999999999998999999
Q ss_pred EEECCc
Q psy12579 110 VRYTPK 115 (138)
Q Consensus 110 v~r~~~ 115 (138)
|.|+..
T Consensus 88 v~R~~~ 93 (106)
T 4amh_A 88 VAKPGS 93 (106)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 999764
No 80
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.64 E-value=3.9e-15 Score=90.32 Aligned_cols=84 Identities=26% Similarity=0.443 Sum_probs=73.5
Q ss_pred cEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109 (138)
Q Consensus 30 ~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 109 (138)
++.+.+. ++.+|||++.++.+...+++|..|.++|||+++ ||+.||.|++|||.++.++.+.++..+++..+..+.|+
T Consensus 4 ~~~v~~~-~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 81 (91)
T 2pkt_A 4 TQQIDLQ-GPGPWGFRLVGGKDFEQPLAISRVTPGSKAALA-NLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLT 81 (91)
T ss_dssp EEEEEEE-SSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred cEEEEEC-CCCCCCEEEEccCCCCCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 4556665 457899999987665568999999999999999 89999999999999999999999999998888999999
Q ss_pred EEECCc
Q psy12579 110 VRYTPK 115 (138)
Q Consensus 110 v~r~~~ 115 (138)
+.|+..
T Consensus 82 v~R~g~ 87 (91)
T 2pkt_A 82 VARSEH 87 (91)
T ss_dssp EEEECC
T ss_pred EEECCc
Confidence 998764
No 81
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.64 E-value=4e-15 Score=93.00 Aligned_cols=90 Identities=30% Similarity=0.494 Sum_probs=76.4
Q ss_pred CCCCCcEEEEEe--cCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHH
Q psy12579 25 EGHAHPRVVELP--KTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAV 96 (138)
Q Consensus 25 ~~~~~~~~v~l~--~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~ 96 (138)
+...+...+.+. +...+|||++.++.+. ..+++|..|.+++||+++ | |++||+|++|||.++.++++.++.
T Consensus 8 ~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~ 86 (108)
T 2jre_A 8 ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALD-GRIEPNDKILRVDDVNVQGMAQSDVV 86 (108)
T ss_dssp SSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHH-SSCCSSEEEEEETTEECTTSCHHHHH
T ss_pred ccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHH
Confidence 344566778884 5568899999886532 348999999999999999 7 999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEECCc
Q psy12579 97 ELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 97 ~~l~~~~~~v~l~v~r~~~ 115 (138)
.+++..+..+.|+|.|+..
T Consensus 87 ~~l~~~g~~v~l~v~R~~~ 105 (108)
T 2jre_A 87 EVLRNAGNPVRLLLIRRLP 105 (108)
T ss_dssp HHHHHHCSEEEEEEEECCC
T ss_pred HHHHcCCCeEEEEEEeCCc
Confidence 9998888899999998764
No 82
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.64 E-value=3.7e-15 Score=93.48 Aligned_cols=88 Identities=35% Similarity=0.598 Sum_probs=77.0
Q ss_pred CCcEEEEEecCCCCcCeEEeccCC------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKE------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
.+...+.+.+...+|||++.++.+ ...+++|..|.+++||+++ ||+.||+|++|||..+.+..+.++...++.
T Consensus 14 ~~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~~ 92 (110)
T 1x5q_A 14 EEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRG 92 (110)
T ss_dssp CEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred cceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHhhC
Confidence 466678888888999999997653 2467999999999999999 899999999999999999999988888888
Q ss_pred CCCeEEEEEEECCch
Q psy12579 102 AQRSVKLVVRYTPKV 116 (138)
Q Consensus 102 ~~~~v~l~v~r~~~~ 116 (138)
.+..+.|+|.|+...
T Consensus 93 ~g~~v~l~v~R~g~~ 107 (110)
T 1x5q_A 93 AGTAVQMRVWRESGP 107 (110)
T ss_dssp CCSEEEEEEEECSSC
T ss_pred CCCeEEEEEEECCcc
Confidence 889999999998643
No 83
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.64 E-value=7.5e-15 Score=90.00 Aligned_cols=86 Identities=36% Similarity=0.623 Sum_probs=75.2
Q ss_pred CcEEEEEecCCCCcCeEEeccCC------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKE------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
+...+.+.+...+|||++.++.+ ...+++|..|.+++||+++ ||+.||.|++|||.++.++.+.++...++..
T Consensus 3 ~~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~ 81 (97)
T 2w4f_A 3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGA 81 (97)
T ss_dssp CEEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred eEEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence 44668888888899999997654 2467999999999999999 8999999999999999999988888888788
Q ss_pred CCeEEEEEEECCc
Q psy12579 103 QRSVKLVVRYTPK 115 (138)
Q Consensus 103 ~~~v~l~v~r~~~ 115 (138)
+..+.|++.|+..
T Consensus 82 g~~v~l~v~R~g~ 94 (97)
T 2w4f_A 82 GTAVQMRVWRERE 94 (97)
T ss_dssp CSEEEEEEECCSS
T ss_pred CCeEEEEEEeCCc
Confidence 9999999999864
No 84
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.64 E-value=7.8e-15 Score=92.62 Aligned_cols=90 Identities=36% Similarity=0.526 Sum_probs=76.8
Q ss_pred CCCCCcEEEEEecC-CCCcCeEEeccCCC-------CCCeEEEEEcCCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579 25 EGHAHPRVVELPKT-DEGLGFNVMGGKEQ-------NSPIYISRIIPGGVADR-HGGLKRGDQLLSVNGVSVEGEDHGKA 95 (138)
Q Consensus 25 ~~~~~~~~v~l~~~-~~~~G~~l~~~~~~-------~~~v~V~~v~~gs~a~~-~~gl~~gD~i~~ing~~v~~~~~~~~ 95 (138)
+...+++.|.+.+. ..+|||+|.++.+. ..+++|..|.+++||++ + +|+.||+|++|||..+.++++.++
T Consensus 6 ~~~~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~a-gL~~GD~I~~ing~~v~~~~~~~~ 84 (114)
T 1uew_A 6 SGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCA-KLKVGDRILAVNGQSIINMPHADI 84 (114)
T ss_dssp SCCCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGS-SCCTTCBEEEETTBCTTTSCHHHH
T ss_pred CCcccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhC-CCCCCCEEEEECCEECCCCCHHHH
Confidence 44567889999885 47899999875422 12579999999999999 6 999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEECCc
Q psy12579 96 VELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 96 ~~~l~~~~~~v~l~v~r~~~ 115 (138)
..+++..+..+.|+|.|...
T Consensus 85 ~~~l~~~g~~v~l~v~r~~~ 104 (114)
T 1uew_A 85 VKLIKDAGLSVTLRIIPQEE 104 (114)
T ss_dssp HHHHHHTTTEEEEEECCCSC
T ss_pred HHHHHcCCCeEEEEEEeCCc
Confidence 99999888999999988753
No 85
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.63 E-value=5.8e-16 Score=97.39 Aligned_cols=89 Identities=34% Similarity=0.520 Sum_probs=77.6
Q ss_pred CCCCCcEEEEEecCC-CCcCeEEeccCC---------CCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHH
Q psy12579 25 EGHAHPRVVELPKTD-EGLGFNVMGGKE---------QNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHG 93 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~---------~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~ 93 (138)
+.++..++|.|.++. .+|||++.++.+ ...+++|..|.++++|+++ | |+.||+|++|||..+.++++.
T Consensus 5 p~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~vng~~v~~~~~~ 83 (111)
T 1uju_A 5 SSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRD-GRLRVGLRLLEVNQQSLLGLTHG 83 (111)
T ss_dssp CCSCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHH-SSCCTTCBCCBBSSCBCTTSCHH
T ss_pred CCCCccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHH
Confidence 445667789998876 899999998763 2457999999999999999 6 999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEECC
Q psy12579 94 KAVELLKQAQRSVKLVVRYTP 114 (138)
Q Consensus 94 ~~~~~l~~~~~~v~l~v~r~~ 114 (138)
++..+++..+..+.|+|.|..
T Consensus 84 ~~~~~l~~~g~~v~l~v~r~~ 104 (111)
T 1uju_A 84 EAVQLLRSVGDTLTVLVCDGF 104 (111)
T ss_dssp HHHHHHSSCSSEEEECCCCCC
T ss_pred HHHHHHHcCCCeEEEEEEECC
Confidence 999999988889999988764
No 86
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.63 E-value=1.1e-15 Score=109.27 Aligned_cols=89 Identities=40% Similarity=0.633 Sum_probs=80.8
Q ss_pred CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
..+++|+|.+.. .+|||+|.++.+...+++|..|.+++||+++++|+.||+|++|||.++.++++.++..+++..+..+
T Consensus 76 ~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V 155 (263)
T 1z87_A 76 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV 155 (263)
T ss_dssp CSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCC
T ss_pred CccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeE
Confidence 468999999975 8999999998776678999999999999995599999999999999999999999999999999999
Q ss_pred EEEEEECCch
Q psy12579 107 KLVVRYTPKV 116 (138)
Q Consensus 107 ~l~v~r~~~~ 116 (138)
.|+|.|.+..
T Consensus 156 ~L~V~R~~~~ 165 (263)
T 1z87_A 156 VLEVKYMKEV 165 (263)
T ss_dssp CEEEECCSSS
T ss_pred EEEEEeCccc
Confidence 9999997654
No 87
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.63 E-value=1.1e-14 Score=88.90 Aligned_cols=82 Identities=34% Similarity=0.579 Sum_probs=71.5
Q ss_pred cEEEEEecCCCCcCeEEeccCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 30 PRVVELPKTDEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 30 ~~~v~l~~~~~~~G~~l~~~~~--------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
..+|++.++. +|||++.++.+ ...+++|..|.+++||++ +|+.||+|++|||.++.++++.++..+++.
T Consensus 4 ~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~~ 80 (95)
T 1mfg_A 4 EIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKT 80 (95)
T ss_dssp EEEEEEECSS-SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT--TCCTTCEEEEETTEECTTCBHHHHHHHHHH
T ss_pred EEEEEECCCC-CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh--CCCCCCEEEEECCEEcCCCCHHHHHHHhhc
Confidence 3567777665 89999998653 245899999999999998 999999999999999999999999999988
Q ss_pred CCCeEEEEEEECC
Q psy12579 102 AQRSVKLVVRYTP 114 (138)
Q Consensus 102 ~~~~v~l~v~r~~ 114 (138)
.+..+.|+|.|++
T Consensus 81 ~~~~v~l~v~R~~ 93 (95)
T 1mfg_A 81 FQNTVELIIVREV 93 (95)
T ss_dssp CCSEEEEEEEEEC
T ss_pred CCCeEEEEEEeCC
Confidence 8999999998875
No 88
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=96.14 Aligned_cols=91 Identities=34% Similarity=0.567 Sum_probs=79.2
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
..+.+.+.+.+.++..+|||++.++.+.. .+++|..|.++++|+++ | |+.||+|++|||..+.++++.++..+++..
T Consensus 13 ~~~~~~~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 91 (116)
T 2dm8_A 13 IVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARD-GRLWAGDQILEVNGVDLRNSSHEEAITALRQT 91 (116)
T ss_dssp CCTTSCEEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHH-TCCCTTCEEEEETTEECSSSCHHHHHHHHHTC
T ss_pred cCCCCEEEEEEEECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 34456688999998899999999865433 58999999999999999 6 999999999999999999999999999888
Q ss_pred CCeEEEEEEECCch
Q psy12579 103 QRSVKLVVRYTPKV 116 (138)
Q Consensus 103 ~~~v~l~v~r~~~~ 116 (138)
+..+.|+|.|+...
T Consensus 92 ~~~v~l~v~R~~~~ 105 (116)
T 2dm8_A 92 PQKVRLVVYRDEAH 105 (116)
T ss_dssp CSEEEEEEECCSSC
T ss_pred CCeEEEEEEeCCcc
Confidence 88999999987643
No 89
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.63 E-value=3.5e-15 Score=94.13 Aligned_cols=84 Identities=29% Similarity=0.573 Sum_probs=75.2
Q ss_pred CCcEEEEEecCCC-CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 28 AHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGL-KRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~~-~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl-~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
...++|++.+... +|||.+... ..+++|..|.+++||+++ || +.||+|++|||..+.++++.++..+++..+..
T Consensus 24 ~~~~~v~l~k~~~~~lG~~i~~~---~~gv~V~~V~~~spA~~a-Gll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~ 99 (113)
T 1va8_A 24 ETVKIVRIEKARDIPLGATVRNE---MDSVIISRIVKGGAAEKS-GLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGT 99 (113)
T ss_dssp EECEEEEEEECTTCCCCEEEEEC---SSSEEEEEECTTSHHHHH-TCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEE
T ss_pred CceEEEEEEeCCCCceeEEEEeC---CCCEEEEEeCCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 4678899999886 999999875 457999999999999999 77 99999999999999999999999999988888
Q ss_pred EEEEEEECCc
Q psy12579 106 VKLVVRYTPK 115 (138)
Q Consensus 106 v~l~v~r~~~ 115 (138)
+.|+|.|...
T Consensus 100 v~l~v~r~~~ 109 (113)
T 1va8_A 100 LTFVLIPSSG 109 (113)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEECCc
Confidence 9999988754
No 90
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.63 E-value=6.5e-16 Score=95.78 Aligned_cols=90 Identities=31% Similarity=0.583 Sum_probs=78.7
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
....+...+.+.+...+|||++.++.+...+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+++..+
T Consensus 7 ~~~~~~~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 85 (103)
T 1wfv_A 7 GQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRN-GRMRVGDQIIEINGESTRDMTHARAIELIKSGG 85 (103)
T ss_dssp CCCSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHH-CSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC
T ss_pred ccCceEEEEEEecCCCcCCEEEeccccCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 4445677788888888999999987655557999999999999999 7 9999999999999999999999999998888
Q ss_pred CeEEEEEEECCc
Q psy12579 104 RSVKLVVRYTPK 115 (138)
Q Consensus 104 ~~v~l~v~r~~~ 115 (138)
..+.|+|.|+..
T Consensus 86 ~~v~l~v~R~~~ 97 (103)
T 1wfv_A 86 RRVRLLLKRGTG 97 (103)
T ss_dssp SEECEEEECTTC
T ss_pred CeEEEEEEECCC
Confidence 999999998754
No 91
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.62 E-value=4.4e-15 Score=95.67 Aligned_cols=90 Identities=31% Similarity=0.539 Sum_probs=77.9
Q ss_pred CCCCCcEEEEEecC--CCCcCeEEeccCC---------CCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCH
Q psy12579 25 EGHAHPRVVELPKT--DEGLGFNVMGGKE---------QNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDH 92 (138)
Q Consensus 25 ~~~~~~~~v~l~~~--~~~~G~~l~~~~~---------~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~ 92 (138)
..+..++.|++.+. ..+|||++.++.+ ...+++|..|.++|+|+++ | |+.||+|++|||.++.++++
T Consensus 25 ~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~vng~~v~~~~~ 103 (128)
T 1nf3_C 25 ILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQST-GLLAVNDEVLEVNGIEVSGKSL 103 (128)
T ss_dssp TSCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHH-TCCCTTCEEEEETTEESTTCCH
T ss_pred cCCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCH
Confidence 44567889999997 4789999987642 1246999999999999999 6 99999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEECCc
Q psy12579 93 GKAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 93 ~~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
.++..+++..+..+.|+|.|...
T Consensus 104 ~~~~~~l~~~~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 104 DQVTDMMIANSRNLIITVRPANQ 126 (128)
T ss_dssp HHHHHHHHHTTTSEEEEEECCCC
T ss_pred HHHHHHHHcCCCeEEEEEEECCc
Confidence 99999999888899999998753
No 92
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1e-14 Score=89.98 Aligned_cols=89 Identities=34% Similarity=0.560 Sum_probs=76.4
Q ss_pred CCCCCcEEEEEecCCC-CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 25 EGHAHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~-~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
.....+++|+|.+... .|||++....+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++...++. +
T Consensus 6 ~~~~~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~ 83 (100)
T 2eeh_A 6 SGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERA-GLCVGDKITEVNGLSLESTTMGSAVKVLTS-S 83 (100)
T ss_dssp SCCCEECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHH-TCCSSCEEEEETTEECSSCCHHHHHHHHHS-C
T ss_pred CCCCeEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHhhcC-C
Confidence 3345677789988775 599999987655568999999999999999 899999999999999999888888888876 7
Q ss_pred CeEEEEEEECCc
Q psy12579 104 RSVKLVVRYTPK 115 (138)
Q Consensus 104 ~~v~l~v~r~~~ 115 (138)
..+.|++.|+..
T Consensus 84 ~~v~l~v~R~g~ 95 (100)
T 2eeh_A 84 SRLHMMVRRMGS 95 (100)
T ss_dssp SSEEEEEEECSC
T ss_pred CEEEEEEEECCc
Confidence 899999999864
No 93
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.62 E-value=1.2e-14 Score=91.10 Aligned_cols=86 Identities=34% Similarity=0.520 Sum_probs=73.9
Q ss_pred CCcEEEEEec-CCCCcCeEEeccCCC------------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHH
Q psy12579 28 AHPRVVELPK-TDEGLGFNVMGGKEQ------------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 94 (138)
Q Consensus 28 ~~~~~v~l~~-~~~~~G~~l~~~~~~------------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~ 94 (138)
.+++.+.+.+ ...+|||++.++... ..+++|..|.++++|+++ ||+.||+|++|||..+.++++.+
T Consensus 6 ~~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~ 84 (109)
T 1q3o_A 6 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRMGDFLIEVNGQNVVKVGHRQ 84 (109)
T ss_dssp EEEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHH
T ss_pred cCcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHH
Confidence 3568899975 457999999987542 126899999999999999 89999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEECC
Q psy12579 95 AVELLKQAQRSVKLVVRYTP 114 (138)
Q Consensus 95 ~~~~l~~~~~~v~l~v~r~~ 114 (138)
+..+++..+..+.|+|.+..
T Consensus 85 ~~~~l~~~~~~v~l~v~~~~ 104 (109)
T 1q3o_A 85 VVNMIRQGGNTLMVKVVMVT 104 (109)
T ss_dssp HHHHHHHTTTEEEEEEEEEE
T ss_pred HHHHHHhCCCEEEEEEEECC
Confidence 99999988888999887754
No 94
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.62 E-value=6.5e-15 Score=90.51 Aligned_cols=88 Identities=30% Similarity=0.516 Sum_probs=74.7
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
.....++.+.+.++..+|||++.++.+ ..+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..+++....
T Consensus 5 ~~~~~~~~~~l~~~~~g~G~~~~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~ 82 (98)
T 2jxo_A 5 FTMLRPRLCTMKKGPSGYGFNLHSDKS-KPGQFIRSVDPDSPAEAS-GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD 82 (98)
T ss_dssp SCSSCCEEEEEECTTTCCCEEEECCCS-SSCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred CccCCcEEEEEEeCCCcccEEEEecCC-CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 344678999999998999999987543 347999999999999999 899999999999999999889999999988754
Q ss_pred -eEEEEEEECC
Q psy12579 105 -SVKLVVRYTP 114 (138)
Q Consensus 105 -~v~l~v~r~~ 114 (138)
.+.+++.|++
T Consensus 83 ~~~~l~v~R~g 93 (98)
T 2jxo_A 83 ETKLLVVDRET 93 (98)
T ss_dssp EEEEEECCHHH
T ss_pred cEEEEEEECCc
Confidence 4557777654
No 95
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.62 E-value=4.1e-15 Score=94.34 Aligned_cols=85 Identities=33% Similarity=0.538 Sum_probs=75.5
Q ss_pred CCcEEEEEecCC-CCcCeEEeccCCC------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~~~------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~ 100 (138)
.+.+.|.|.++. .+|||++.++.+. ..+++|..|.++++|+ + +|+.||+|++|||.++.++++.++..+++
T Consensus 13 ~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~-gL~~GD~I~~Vng~~v~~~~~~~~~~~l~ 90 (117)
T 2csj_A 13 WEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-G-LLQENDRVVMVNGTPMEDVLHSFAVQQLR 90 (117)
T ss_dssp EEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-H-HBCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred ceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-c-cCCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence 567889999886 8999999987652 4579999999999997 5 99999999999999999999999999999
Q ss_pred hCCCeEEEEEEECC
Q psy12579 101 QAQRSVKLVVRYTP 114 (138)
Q Consensus 101 ~~~~~v~l~v~r~~ 114 (138)
..+..+.|+|.|..
T Consensus 91 ~~~~~v~l~v~R~~ 104 (117)
T 2csj_A 91 KSGKIAAIVVKRPR 104 (117)
T ss_dssp HSCSEEEEEEEEEE
T ss_pred cCCCeEEEEEEECC
Confidence 99999999998864
No 96
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.62 E-value=3.4e-15 Score=94.07 Aligned_cols=89 Identities=28% Similarity=0.514 Sum_probs=76.8
Q ss_pred CCcEEEEEecCCCCcCeEEec---cCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 28 AHPRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~---~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
.+...|++.++..+|||++.+ +.+ ...+++|..|.++|||+++|.|+.||.|++|||.++.++++.++..+++.
T Consensus 3 ~~~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~ 82 (113)
T 2g5m_B 3 MELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 82 (113)
T ss_dssp CEEEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH
T ss_pred eEEEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence 355778888888999999988 322 24579999999999999993399999999999999999999999999999
Q ss_pred CCCeEEEEEEECCch
Q psy12579 102 AQRSVKLVVRYTPKV 116 (138)
Q Consensus 102 ~~~~v~l~v~r~~~~ 116 (138)
.+..+.|++.|++..
T Consensus 83 ~g~~v~l~v~R~~~~ 97 (113)
T 2g5m_B 83 TKGRVRFMIGRERPG 97 (113)
T ss_dssp SCSSCEEEEEECCCC
T ss_pred CCCeEEEEEEeCCCC
Confidence 999999999998653
No 97
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.62 E-value=2.1e-15 Score=93.64 Aligned_cols=85 Identities=29% Similarity=0.482 Sum_probs=75.0
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l 108 (138)
+..+|.+. ++.+|||++.++.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++..+..+.|
T Consensus 5 ~~~~v~l~-~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l 82 (103)
T 1wf7_A 5 SSGSVSLV-GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM 82 (103)
T ss_dssp CCEEEEEE-SSSCCSCCEEEETTTTEEEEECCCCTTCHHHHT-TCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEE
T ss_pred CEEEEEEe-CCCccCEEEeccccCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 45667777 568899999988766667899999999999999 8999999999999999999999999999888889999
Q ss_pred EEEECCc
Q psy12579 109 VVRYTPK 115 (138)
Q Consensus 109 ~v~r~~~ 115 (138)
+|.|+..
T Consensus 83 ~v~R~g~ 89 (103)
T 1wf7_A 83 TLQRASA 89 (103)
T ss_dssp EECCCSC
T ss_pred EEEeCCC
Confidence 9988764
No 98
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.62 E-value=1e-14 Score=99.97 Aligned_cols=91 Identities=32% Similarity=0.569 Sum_probs=80.4
Q ss_pred ccCCCCCcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 23 ASEGHAHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 23 ~~~~~~~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
........+.|.+.+. +.+|||++.++.+...+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..+++.
T Consensus 78 ~~~~~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~a-GL~~GD~Il~vng~~v~~~~~~~~~~~l~~ 156 (192)
T 3k1r_A 78 TPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSV-GLQVGDEIVRINGYSISSCTHEEVINLIRT 156 (192)
T ss_dssp SCCCCSSCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHT-TCCTTEEEEEETTEECTTCCHHHHHHHHTS
T ss_pred CCCCCCceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHcC
Confidence 3444567889999987 57999999987665668999999999999999 799999999999999999999999999988
Q ss_pred CCCeEEEEEEECCc
Q psy12579 102 AQRSVKLVVRYTPK 115 (138)
Q Consensus 102 ~~~~v~l~v~r~~~ 115 (138)
+..+.|+|.|.+.
T Consensus 157 -~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 157 -EKTVSIKVRHIGL 169 (192)
T ss_dssp -SSEEEEEEEECCE
T ss_pred -CCeEEEEEEECCc
Confidence 8999999999864
No 99
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.62 E-value=2.2e-14 Score=90.63 Aligned_cols=87 Identities=22% Similarity=0.391 Sum_probs=74.3
Q ss_pred CCCCcEEEEEecCCC-CcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 26 GHAHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 26 ~~~~~~~v~l~~~~~-~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
+...+++|++.++.. +|||++.++.+...+++|..|.++|||+++ | |+.||+|++|||.++.+.++.++..+++..+
T Consensus 21 q~~~~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~a-G~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~ 99 (114)
T 2gzv_A 21 QSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALD-GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK 99 (114)
T ss_dssp -CCCCEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred ccCCCEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 345788999998875 499999987655557999999999999999 7 9999999999999998889999999999888
Q ss_pred CeEEEEEEEC
Q psy12579 104 RSVKLVVRYT 113 (138)
Q Consensus 104 ~~v~l~v~r~ 113 (138)
+.+.|++.+.
T Consensus 100 ~~v~l~v~~~ 109 (114)
T 2gzv_A 100 GEVTIHYNKL 109 (114)
T ss_dssp SEEEEEEECC
T ss_pred CeEEEEEEec
Confidence 8888888654
No 100
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.61 E-value=1.7e-14 Score=89.94 Aligned_cols=86 Identities=29% Similarity=0.536 Sum_probs=75.0
Q ss_pred CCcEEEEEecCC-CCcCeEEeccCCC------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~~~------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~ 100 (138)
.++++|++.++. .+|||++.++.+. ..+++|..|.+++||+ + +|+.||.|++|||.++.++.+..+...+.
T Consensus 6 ~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-a-gl~~GD~I~~vng~~v~~~~~~~~~~~~~ 83 (107)
T 2h2b_A 6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-G-QLQENDRVAMVNGVSMDNVEHAFAVQQLR 83 (107)
T ss_dssp EEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-T-TBCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred ceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-h-CCCCCCEEEEECCEECCCccHHHHHHHhh
Confidence 467889999985 7999999986642 3589999999999999 6 99999999999999999999888888888
Q ss_pred hCCCeEEEEEEECCc
Q psy12579 101 QAQRSVKLVVRYTPK 115 (138)
Q Consensus 101 ~~~~~v~l~v~r~~~ 115 (138)
..+..+.|++.|+..
T Consensus 84 ~~g~~v~l~v~R~~~ 98 (107)
T 2h2b_A 84 KSGKNAKITIRRKKG 98 (107)
T ss_dssp TCCSEEEEEEEEESC
T ss_pred CCCCEEEEEEEECCC
Confidence 788999999988753
No 101
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.61 E-value=1.1e-14 Score=90.71 Aligned_cols=84 Identities=35% Similarity=0.524 Sum_probs=74.8
Q ss_pred cEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579 30 PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108 (138)
Q Consensus 30 ~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l 108 (138)
++.+.+.+.. ..|||.+....+ ..+++|..|.++|||+.+ ||+.||.|++|||.++.++++.++..+++..+..+.|
T Consensus 2 ~r~v~l~~~~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 79 (106)
T 3ngh_A 2 PRESKLSKQEGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKA-GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL 79 (106)
T ss_dssp CEEEEEECCTTCCCCCEEECCTT-CCSCEEECCCTTSHHHHT-TCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEE
T ss_pred CEEEEEEeCCCCeeCEEEEEEeC-CCCEEEEEeCCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEE
Confidence 6889998877 789999987643 457999999999999999 8999999999999999999999999999988999999
Q ss_pred EEEECCc
Q psy12579 109 VVRYTPK 115 (138)
Q Consensus 109 ~v~r~~~ 115 (138)
++.|...
T Consensus 80 ~v~r~~~ 86 (106)
T 3ngh_A 80 LVLDGDS 86 (106)
T ss_dssp EEECHHH
T ss_pred EEEECCe
Confidence 9998643
No 102
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.61 E-value=1e-14 Score=91.54 Aligned_cols=82 Identities=23% Similarity=0.374 Sum_probs=72.7
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-E
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-V 106 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~-v 106 (138)
..+|+|.|.+++.+|||++.+ ..+++|..|.+++||+++ ||+.||.|++|||.++.++++.++..+++..++. +
T Consensus 22 ~~~r~v~l~k~~~~~G~~l~~----~~~v~V~~V~~gspA~~A-GL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v 96 (109)
T 2vsv_A 22 SMPRSIRFTAEEGDLGFTLRG----NAPVQVHFLDPYCSASVA-GAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEI 96 (109)
T ss_dssp HSCEEEEECCGGGCCCEEEES----SSSCEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCE
T ss_pred CCCEEEEEEeCCCceeEEEeC----CCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeE
Confidence 367899999988999999976 356899999999999999 9999999999999999998999999999887664 8
Q ss_pred EEEEEECC
Q psy12579 107 KLVVRYTP 114 (138)
Q Consensus 107 ~l~v~r~~ 114 (138)
.|+|.+..
T Consensus 97 ~l~V~~~~ 104 (109)
T 2vsv_A 97 EMKVVSLL 104 (109)
T ss_dssp EEEEESCC
T ss_pred EEEEEECC
Confidence 99987764
No 103
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.61 E-value=2.2e-14 Score=90.06 Aligned_cols=90 Identities=34% Similarity=0.619 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLK 100 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~ 100 (138)
....+...+.+.++..+|||++.+..+. ..+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+++
T Consensus 7 ~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~a-G~l~~GD~I~~ing~~v~~~~~~~~~~~l~ 85 (111)
T 2koj_A 7 KKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQD-GRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 85 (111)
T ss_dssp SSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHH-CSSCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred cccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3445667788888889999999876432 257999999999999999 6 9999999999999999999999999998
Q ss_pred hC--CCeEEEEEEECCc
Q psy12579 101 QA--QRSVKLVVRYTPK 115 (138)
Q Consensus 101 ~~--~~~v~l~v~r~~~ 115 (138)
.. +..+.|+|.|+..
T Consensus 86 ~~~~g~~v~l~v~R~~~ 102 (111)
T 2koj_A 86 STKMEGTVSLLVFRQEE 102 (111)
T ss_dssp HCCCSSEEEEEEEECCC
T ss_pred hCCCCCeEEEEEEeCCC
Confidence 75 7889999998864
No 104
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.61 E-value=1e-14 Score=92.74 Aligned_cols=85 Identities=29% Similarity=0.545 Sum_probs=72.2
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC----C
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA----Q 103 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~----~ 103 (138)
..+.+.+.+. .+|||++.++.+.. .+++|..|.++|||+++|+|+.||+|++|||..+.++++.++..+++.. +
T Consensus 18 ~~~~~~~~~~-~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g 96 (118)
T 1v6b_A 18 DVRLLRIKKE-GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGG 96 (118)
T ss_dssp CEEEEEEESC-SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTC
T ss_pred eEEEEEECCC-CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCC
Confidence 3456666655 48999999876543 3499999999999999999999999999999999999999999988764 7
Q ss_pred CeEEEEEEECC
Q psy12579 104 RSVKLVVRYTP 114 (138)
Q Consensus 104 ~~v~l~v~r~~ 114 (138)
..+.|+|.|.+
T Consensus 97 ~~v~l~v~r~~ 107 (118)
T 1v6b_A 97 DWIDLVVAVCP 107 (118)
T ss_dssp SEEEEEEECCC
T ss_pred CeEEEEEEeCC
Confidence 89999999864
No 105
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.60 E-value=1.4e-14 Score=98.87 Aligned_cols=88 Identities=38% Similarity=0.623 Sum_probs=78.5
Q ss_pred CCCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 27 HAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 27 ~~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
..+.+.|++.+++.+|||++.++.+. ..+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++.
T Consensus 3 ~~~~~~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~ 82 (196)
T 3gsl_A 3 SMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 82 (196)
T ss_dssp CEEEEEEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred CcEEEEEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 45678899999999999999998654 4589999999999999993399999999999999999999999999999
Q ss_pred CCCeEEEEEEECC
Q psy12579 102 AQRSVKLVVRYTP 114 (138)
Q Consensus 102 ~~~~v~l~v~r~~ 114 (138)
.+..+.+++.|..
T Consensus 83 ~g~~v~l~v~r~~ 95 (196)
T 3gsl_A 83 AGSIVRLYVMRRK 95 (196)
T ss_dssp SCSEEEEEEEEEC
T ss_pred CCCcEEEEEEecC
Confidence 9999999998764
No 106
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.60 E-value=1.6e-14 Score=87.04 Aligned_cols=82 Identities=24% Similarity=0.385 Sum_probs=69.1
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeE
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSV 106 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v 106 (138)
+.++|++.++..+|||++.+..+ ..+++|..+ +++||+ + +|+.||.|++|||.++.++++.++..+++. .+..+
T Consensus 3 ~~~~v~l~k~~~g~G~~~~~~~~-~~~~~v~~v-~~spA~-a-Gl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v 78 (88)
T 3bpu_A 3 ELITVHIVKGPMGFGFTIADSPG-GGGQRVKQI-VDSPRS-R-GLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEV 78 (88)
T ss_dssp EEEEEEEECBTTBSSCEEEECTT-SSSEEEEEC-CC--CC-T-TCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEE
T ss_pred cEEEEEEEcCCCceeEEEEecCC-CCcEEEEEe-cCChhH-h-CCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEE
Confidence 56789999999999999987533 357888887 999999 7 999999999999999999999999999885 47889
Q ss_pred EEEEEECC
Q psy12579 107 KLVVRYTP 114 (138)
Q Consensus 107 ~l~v~r~~ 114 (138)
.|++.|+.
T Consensus 79 ~l~v~R~g 86 (88)
T 3bpu_A 79 TLLVQRQT 86 (88)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeCC
Confidence 99998865
No 107
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.6e-15 Score=91.62 Aligned_cols=90 Identities=29% Similarity=0.468 Sum_probs=75.1
Q ss_pred CCCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 25 EGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
+...+.+.+.+.... .+|||++.++.+...+++|..|.+++||+++++|++||+|++||+.++.++ +.++..+++..+
T Consensus 5 ~~~~~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~ 83 (100)
T 2edp_A 5 SSGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSF 83 (100)
T ss_dssp CCCCCCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCC
T ss_pred CCCCCcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCC
Confidence 344555666665543 689999998766556789999999999999989999999999999999886 788888888888
Q ss_pred CeEEEEEEECCc
Q psy12579 104 RSVKLVVRYTPK 115 (138)
Q Consensus 104 ~~v~l~v~r~~~ 115 (138)
..+.|+|.|+..
T Consensus 84 ~~v~l~v~R~~~ 95 (100)
T 2edp_A 84 RILKLIVRRRNS 95 (100)
T ss_dssp SSCEEEEEECCC
T ss_pred CeEEEEEEeCCC
Confidence 899999999764
No 108
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.60 E-value=1.8e-14 Score=88.60 Aligned_cols=84 Identities=24% Similarity=0.439 Sum_probs=71.4
Q ss_pred CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
.-++.|.+.|.. .+|||++.... ..+++|..|.++|||+++|.|++||.|++|||.++.++++.++..+++..+..+
T Consensus 11 ~~~~~v~l~K~~~~~lG~~l~~~~--~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v 88 (97)
T 2ejy_A 11 HMVRLIQFEKVTEEPMGICLKLNE--KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMI 88 (97)
T ss_dssp --CEEEEEEECSSSCCSEEEEECT--TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEE
T ss_pred CccEEEEEEeCCCCCeeEEEEeCC--CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 457889998855 68999998643 357999999999999999339999999999999999888999999999888888
Q ss_pred EEEEEEC
Q psy12579 107 KLVVRYT 113 (138)
Q Consensus 107 ~l~v~r~ 113 (138)
.|+|.+.
T Consensus 89 ~L~V~~~ 95 (97)
T 2ejy_A 89 SLKVIPN 95 (97)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 8888754
No 109
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=98.36 Aligned_cols=90 Identities=27% Similarity=0.462 Sum_probs=77.7
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCC----------------------------CCCCeEEEEEcCCChhhhcCCCCCC
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKE----------------------------QNSPIYISRIIPGGVADRHGGLKRG 76 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~----------------------------~~~~v~V~~v~~gs~a~~~~gl~~g 76 (138)
..++.+++|+|.++..+|||++.+... ...+++|..|.+++||+++ ||+.|
T Consensus 4 ~~~~~~r~v~l~r~~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~a-GL~~G 82 (126)
T 2yuy_A 4 GSSGGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEA-GLCTG 82 (126)
T ss_dssp SCSSSCCCEEEECCSSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHH-TCCSS
T ss_pred CCCCCCEEEEEEECCCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHc-CCCCC
Confidence 345788899999999999999975211 1246899999999999999 89999
Q ss_pred CEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579 77 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 77 D~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
|+|++|||.++.++++.++..+++..+..+.|+|.|...
T Consensus 83 D~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 83 DRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS 121 (126)
T ss_dssp CCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence 999999999999999999999999888999999988753
No 110
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.60 E-value=2.9e-14 Score=89.69 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=70.5
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~ 105 (138)
.+.++|+|.++..+|||+|.++ ..+.+|..+.+ ++..+ +|++||.|++|||.++.+++|.++..+++.. +..
T Consensus 11 ~~~~~V~L~Kg~~G~GFsI~~~---~~g~~V~~I~~--~~~~a-GL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~ 84 (113)
T 3soe_A 11 GLLVTIPLIKGPKGFGFAIADS---PTGQKVKMILD--SQWCQ-GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGAD 84 (113)
T ss_dssp CEEEEEEEECBTTBSSEEEEEE---TTEEEEEEESC--GGGST-TCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCE
T ss_pred CCEEEEEEEECCCcccEEEeCC---CCCcEEEEecC--hHHhC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence 4678899999999999999754 34577889887 45555 9999999999999999999999999999985 679
Q ss_pred EEEEEEECCc
Q psy12579 106 VKLVVRYTPK 115 (138)
Q Consensus 106 v~l~v~r~~~ 115 (138)
+.|+|.|...
T Consensus 85 v~L~V~R~g~ 94 (113)
T 3soe_A 85 VPLLILRGGP 94 (113)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEEECCc
Confidence 9999999864
No 111
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.60 E-value=1e-14 Score=89.78 Aligned_cols=83 Identities=23% Similarity=0.305 Sum_probs=71.2
Q ss_pred EEEEecCCCCcCeEEeccCCC--C-----CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQ--N-----SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~--~-----~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
++.+.+++.+|||++...... . .+++|..|.++|||+++ ||+.||.|++|||.++.++++.++..+++..+.
T Consensus 5 ~v~l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~ 83 (99)
T 3khf_A 5 PIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEA-GLRAGDLITHINGESVLGLVHMDVVELLLKSGN 83 (99)
T ss_dssp CEEEEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred CEEEEeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence 477888889999999865321 1 14689999999999999 899999999999999999999999999999999
Q ss_pred eEEEEEEECCc
Q psy12579 105 SVKLVVRYTPK 115 (138)
Q Consensus 105 ~v~l~v~r~~~ 115 (138)
.+.|++.|...
T Consensus 84 ~v~l~v~r~~~ 94 (99)
T 3khf_A 84 KISLRTTALEN 94 (99)
T ss_dssp EEEEEEECSCS
T ss_pred EEEEEEEECCC
Confidence 99999998753
No 112
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.59 E-value=4.7e-15 Score=95.43 Aligned_cols=83 Identities=33% Similarity=0.568 Sum_probs=70.4
Q ss_pred EEEe-cCCCCcCeEEeccCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-----
Q psy12579 33 VELP-KTDEGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA----- 102 (138)
Q Consensus 33 v~l~-~~~~~~G~~l~~~~~~----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~----- 102 (138)
+.+. +...+|||++.++.+. ..+++|..|.+++||+++|.|+.||+|++|||..+.++++.++..+++..
T Consensus 29 v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g 108 (127)
T 1wg6_A 29 IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEG 108 (127)
T ss_dssp EECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhcccc
Confidence 4444 4568999999986532 24799999999999999944999999999999999999999999999875
Q ss_pred --CCeEEEEEEECCc
Q psy12579 103 --QRSVKLVVRYTPK 115 (138)
Q Consensus 103 --~~~v~l~v~r~~~ 115 (138)
+..+.|+|.|...
T Consensus 109 ~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 109 NIRGMIQLVILRRSG 123 (127)
T ss_dssp HHTCEEEEEEEECSC
T ss_pred CCCCEEEEEEEeCCC
Confidence 7899999998754
No 113
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-14 Score=92.68 Aligned_cols=89 Identities=28% Similarity=0.496 Sum_probs=76.7
Q ss_pred CCCCcEEEEEec-CCCCcCeEEeccCC-----CCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579 26 GHAHPRVVELPK-TDEGLGFNVMGGKE-----QNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVEL 98 (138)
Q Consensus 26 ~~~~~~~v~l~~-~~~~~G~~l~~~~~-----~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~ 98 (138)
...+.+.|.+.+ ...+|||++.++.+ ...+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+
T Consensus 12 ~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~ 90 (129)
T 2dmz_A 12 SLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHN-GHIQVNDKIVAVDGVNIQGFANHDVVEV 90 (129)
T ss_dssp CCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHH-TCCCSSCBEEEETTBCCTTCCHHHHHHH
T ss_pred CCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 345677788855 56889999988643 2457999999999999999 6 99999999999999999999999999
Q ss_pred HHhCCCeEEEEEEECCc
Q psy12579 99 LKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 99 l~~~~~~v~l~v~r~~~ 115 (138)
++..+..+.|+|.|+..
T Consensus 91 l~~~~~~v~l~v~R~~~ 107 (129)
T 2dmz_A 91 LRNAGQVVHLTLVRRKT 107 (129)
T ss_dssp HHHCCSSEEEEEEEESS
T ss_pred HHcCCCeEEEEEEeCCc
Confidence 99888899999998764
No 114
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.59 E-value=2.2e-14 Score=88.96 Aligned_cols=84 Identities=33% Similarity=0.569 Sum_probs=73.6
Q ss_pred CCcEEEEEecCCCCcCeEEeccCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~--------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l 99 (138)
.+..+|++.++. +|||++.++.+ ...+++|..|.++|||++ +|+.||.|++|||.++.++++.++...+
T Consensus 10 ~~~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~ 86 (103)
T 1n7t_A 10 KQEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLL 86 (103)
T ss_dssp CCCEEEEEECSS-CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS--SCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred cEEEEEEEccCC-CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH--CCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence 455678888765 89999998653 356899999999999998 9999999999999999999999999999
Q ss_pred HhCCCeEEEEEEECC
Q psy12579 100 KQAQRSVKLVVRYTP 114 (138)
Q Consensus 100 ~~~~~~v~l~v~r~~ 114 (138)
+..+..+.|++.|+.
T Consensus 87 ~~~g~~v~l~v~R~~ 101 (103)
T 1n7t_A 87 KTFQNTVELIIVREV 101 (103)
T ss_dssp HHCCSEEEEEEECCC
T ss_pred hcCCCeEEEEEEecC
Confidence 988999999998874
No 115
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.58 E-value=6.5e-14 Score=86.71 Aligned_cols=87 Identities=30% Similarity=0.570 Sum_probs=73.6
Q ss_pred CCcEEEEEecCC-CCcCeEEeccCCC---------CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHH
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGKEQ---------NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAV 96 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~~~---------~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~ 96 (138)
..|+++.+.+.. ..|||++.+.... ..+++|..|.++|||+++ | |+.||+|++|||.++.++++.++.
T Consensus 3 ldp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~a-G~l~~GD~I~~ing~~v~~~~~~~~~ 81 (103)
T 2fcf_A 3 MQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKN-GTLKPGDRIVEVDGMDLRDASHEQAV 81 (103)
T ss_dssp CSCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred CCCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHc-CCCCCCCEEEEECCEECCCCCHHHHH
Confidence 367889998876 6799999875431 247999999999999999 7 999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEECCc
Q psy12579 97 ELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 97 ~~l~~~~~~v~l~v~r~~~ 115 (138)
.+++..++.+.|++.|...
T Consensus 82 ~~l~~~~~~v~l~v~r~~~ 100 (103)
T 2fcf_A 82 EAIRKAGNPVVFMVQSIIS 100 (103)
T ss_dssp HHHHTCCSSEEEEEECCCC
T ss_pred HHHHhCCCcEEEEEEECCC
Confidence 9999888899999988753
No 116
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.6e-15 Score=90.61 Aligned_cols=84 Identities=25% Similarity=0.423 Sum_probs=74.2
Q ss_pred CCCCCcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 25 EGHAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
...+.+++|+|.+.. .+|||.+.+ ..+++|..|.+++||+ + +|+.||+|++|||.++.++++.++..+++..
T Consensus 4 g~~~~~~~v~l~~~~~~~~~G~~l~~----~~~~~V~~V~~~spA~-a-gL~~GD~Il~ing~~v~~~~~~~~~~~~~~~ 77 (96)
T 2edv_A 4 GSSGVRHTVKIDKDTLLQDYGFHISE----SLPLTVVAVTAGGSAH-G-KLFPGDQILQMNNEPAEDLSWERAVDILREA 77 (96)
T ss_dssp CSSCEEEEEEECCCSSSCSCSBCCCS----SSSCBCCCBCSSSSST-T-TSCTTCBEEEESSCBSTTCCHHHHHHHHHHC
T ss_pred CCCCccEEEEEEECCCCCcccEEEec----CCCeEEEEECCCCchh-h-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 344667889999877 589999987 4579999999999995 5 9999999999999999999999999999988
Q ss_pred CCeEEEEEEECC
Q psy12579 103 QRSVKLVVRYTP 114 (138)
Q Consensus 103 ~~~v~l~v~r~~ 114 (138)
+..+.|+|.|+.
T Consensus 78 g~~v~l~v~R~~ 89 (96)
T 2edv_A 78 EDSLSITVVRCT 89 (96)
T ss_dssp SSCEEEEEEECC
T ss_pred CCeEEEEEEECC
Confidence 999999999975
No 117
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.58 E-value=6.4e-14 Score=85.83 Aligned_cols=86 Identities=24% Similarity=0.318 Sum_probs=74.1
Q ss_pred CCCCCcEEEEEec-CCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 25 EGHAHPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 25 ~~~~~~~~v~l~~-~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
+...+..++.+.+ ...+|||++... ..+++|..|.++|||+++ | |+.||.|++|||.++.++++.++..+++..
T Consensus 4 ~~~~~~~~v~l~~~~~~glG~~~~~~---~~gv~V~~V~~~spA~~a-G~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~ 79 (96)
T 2qkv_A 4 RNSLEKFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEID-SKLQRGDIITKFNGDALEGLPFQVSYALFKGA 79 (96)
T ss_dssp CCCCCCEEEEEECBTTBCCCEEEEEC---SSSEEEEEECTTSCHHHH-HHCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred hHHCceEEEEEEeCCCCCccEEEEeC---CCcEEEEEeCCCChHHhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence 3445667788865 557899998762 457999999999999999 7 999999999999999999999999999998
Q ss_pred CCeEEEEEEECC
Q psy12579 103 QRSVKLVVRYTP 114 (138)
Q Consensus 103 ~~~v~l~v~r~~ 114 (138)
++.+.|++.|..
T Consensus 80 ~~~v~l~v~R~~ 91 (96)
T 2qkv_A 80 NGKVSMEVTRPK 91 (96)
T ss_dssp SSEEEEEEECCC
T ss_pred CCcEEEEEEeCC
Confidence 889999998864
No 118
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.58 E-value=3.7e-14 Score=86.70 Aligned_cols=85 Identities=28% Similarity=0.485 Sum_probs=73.3
Q ss_pred CcEEEEEecCCCCcCeEEeccCC----CCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKE----QNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~----~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
+..++.+.++..+|||++.+... ...+++|..|.+++||+.+ | |+.||+|++|||.++.++++.++..+++..+
T Consensus 4 ~~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 82 (97)
T 2iwn_A 4 ETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHD-GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG 82 (97)
T ss_dssp EEEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHH-CCCCTTCEEEEETTEECTTSCHHHHHHHHHTCC
T ss_pred EEEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 34567788778899999998632 2457999999999999999 7 9999999999999999999999999888888
Q ss_pred CeEEEEEEECC
Q psy12579 104 RSVKLVVRYTP 114 (138)
Q Consensus 104 ~~v~l~v~r~~ 114 (138)
..+.|++.|+.
T Consensus 83 ~~v~l~v~r~g 93 (97)
T 2iwn_A 83 QTVLLTLMRRG 93 (97)
T ss_dssp SEEEEEEEEEE
T ss_pred CeEEEEEEeCC
Confidence 89999998864
No 119
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.58 E-value=6e-14 Score=89.77 Aligned_cols=90 Identities=29% Similarity=0.531 Sum_probs=75.5
Q ss_pred CCCCCcEEEEEecCC-CCcCeEEeccCC---------CCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHH
Q psy12579 25 EGHAHPRVVELPKTD-EGLGFNVMGGKE---------QNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHG 93 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~---------~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~ 93 (138)
+.+..++++.+.+.. ..|||++.++.+ ...+++|..|.++|||+++ | |++||+|++|||.++.++++.
T Consensus 20 s~~~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~Vng~~v~~~~~~ 98 (123)
T 2iwq_A 20 FQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKN-GTLKPGDRIVEVDGMDLRDASHE 98 (123)
T ss_dssp ---CCCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHH-CCCCTTCEEEEETTEECTTCCHH
T ss_pred cccCCCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHH
Confidence 444677899998875 679999986542 1257999999999999999 7 999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEECCc
Q psy12579 94 KAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 94 ~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
++..+++..+..+.|+|.|.+.
T Consensus 99 ~~~~~l~~~~~~v~l~v~r~~~ 120 (123)
T 2iwq_A 99 QAVEAIRKAGNPVVFMVQSIIS 120 (123)
T ss_dssp HHHHHHHHCCSSEEEEEECCCC
T ss_pred HHHHHHHcCCCeEEEEEEECCc
Confidence 9999999888899999988753
No 120
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-14 Score=87.53 Aligned_cols=82 Identities=35% Similarity=0.473 Sum_probs=71.6
Q ss_pred CCcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 28 AHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 28 ~~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
..+|.|.|.+. ..+|||++.+. ..+++|..|.+++||+++++|+.||.|++|||.++ +.++.++..+++..+..+
T Consensus 5 ~~~r~v~l~k~~~~~lG~~i~~~---~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v 80 (91)
T 2e7k_A 5 SSGRMVGIRKTAGEHLGVTFRVE---GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSV 80 (91)
T ss_dssp CCSCBCCBCCCTTCCCCEEEEES---SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSB
T ss_pred CCcEEEEEEECCCCcEeEEEEec---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeE
Confidence 45677888764 47899999873 46799999999999999966999999999999999 889999999999888889
Q ss_pred EEEEEEC
Q psy12579 107 KLVVRYT 113 (138)
Q Consensus 107 ~l~v~r~ 113 (138)
.|++.+.
T Consensus 81 ~l~v~~~ 87 (91)
T 2e7k_A 81 ILKILSG 87 (91)
T ss_dssp CEEEECC
T ss_pred EEEEEEC
Confidence 9988865
No 121
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.57 E-value=5.8e-14 Score=96.79 Aligned_cols=95 Identities=22% Similarity=0.270 Sum_probs=81.7
Q ss_pred hhccCCCCCcEEEEEecCCCCcCeEEeccCCCC--CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCC--CCHHHHH
Q psy12579 21 FAASEGHAHPRVVELPKTDEGLGFNVMGGKEQN--SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG--EDHGKAV 96 (138)
Q Consensus 21 ~~~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~--~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~--~~~~~~~ 96 (138)
+.......+...+++.+++.+|||++.++.+.. .+++|..|.++|+|+++|+|+.||+|++|||..+.+ +++.++.
T Consensus 10 ~~~~~~~~~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~ 89 (206)
T 3r0h_A 10 ATAEIKPNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVH 89 (206)
T ss_dssp TTCCCCTTSCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHH
T ss_pred CcCCCCCCCEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHH
Confidence 344455567888999999999999999876543 479999999999999995599999999999999999 8999999
Q ss_pred HHHHhCCCe-EEEEEEECCc
Q psy12579 97 ELLKQAQRS-VKLVVRYTPK 115 (138)
Q Consensus 97 ~~l~~~~~~-v~l~v~r~~~ 115 (138)
.+++..+.. +.|+|.|+..
T Consensus 90 ~~~~~~~~~~v~l~v~R~~~ 109 (206)
T 3r0h_A 90 QLFHTTYEKAVTLTVFRADP 109 (206)
T ss_dssp HHHHSCCSSEEEEEEECCSS
T ss_pred HHHHhcCCCceEEEEEeccc
Confidence 999988877 9999988754
No 122
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.57 E-value=2.2e-14 Score=90.88 Aligned_cols=87 Identities=31% Similarity=0.620 Sum_probs=76.5
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 107 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~ 107 (138)
.+++.|.+.+...+|||++.++. ..+++|..|.+++||+++ ||+.||+|++|||.++.++++.++...+...+..+.
T Consensus 18 ~~~~~v~l~~~~~~lG~~~~~~~--~~gv~V~~V~~~spA~~a-GL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~ 94 (117)
T 1uit_A 18 EEPRHVKVQKGSEPLGISIVSGE--KGGIYVSKVTVGSIAHQA-GLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTIT 94 (117)
T ss_dssp CCCEEEEEECSSCCCCEEEEECT--TSCEEEEEECTTSHHHHH-TCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEEEeCCCCccEEEEccC--CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence 46778999998889999998764 358999999999999999 899999999999999999998888876777788999
Q ss_pred EEEEECCchH
Q psy12579 108 LVVRYTPKVL 117 (138)
Q Consensus 108 l~v~r~~~~~ 117 (138)
|+|.|++..+
T Consensus 95 l~v~r~~~~~ 104 (117)
T 1uit_A 95 ILAQYNPHVH 104 (117)
T ss_dssp EEECCCSCCC
T ss_pred EEEEECCchh
Confidence 9999987654
No 123
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.57 E-value=3.9e-14 Score=89.99 Aligned_cols=88 Identities=33% Similarity=0.616 Sum_probs=73.5
Q ss_pred CCCcEEEEEecC-CCCcCeEEeccCCC-CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 27 HAHPRVVELPKT-DEGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 27 ~~~~~~v~l~~~-~~~~G~~l~~~~~~-~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
....+.+.+.+. ..+|||++.++.+. ..+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+++..+
T Consensus 13 ~~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~ 91 (119)
T 1x6d_A 13 LDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQE-GTIQKGNEVLSINGKSLKGTTHHDALAILRQAR 91 (119)
T ss_dssp CTTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHH-TSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT
T ss_pred CCCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 345667777775 57899999987653 457999999999999999 6 9999999999999999999999999998876
Q ss_pred Ce-EEEEEEECCc
Q psy12579 104 RS-VKLVVRYTPK 115 (138)
Q Consensus 104 ~~-v~l~v~r~~~ 115 (138)
.. +.+++.|+..
T Consensus 92 ~~~~~l~v~R~~~ 104 (119)
T 1x6d_A 92 EPRQAVIVTRKLT 104 (119)
T ss_dssp SSSEEEEEEECCC
T ss_pred CCeEEEEEEcCCC
Confidence 54 5577777753
No 124
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.57 E-value=1.2e-14 Score=88.65 Aligned_cols=83 Identities=24% Similarity=0.483 Sum_probs=71.5
Q ss_pred EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110 (138)
Q Consensus 31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v 110 (138)
..+.+ ++..+|||++.++.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++..+..+.|++
T Consensus 8 ~~~~~-~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v 85 (94)
T 1vb7_A 8 LTVDV-AGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAA-DLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQL 85 (94)
T ss_dssp EEEEE-CSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEE
T ss_pred EEEEe-cCCCCccEEEecccCCCCCeEEEEECCCCHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEE
Confidence 33444 3557899999987665567999999999999999 999999999999999999999999999988778899999
Q ss_pred EECCc
Q psy12579 111 RYTPK 115 (138)
Q Consensus 111 ~r~~~ 115 (138)
.|+..
T Consensus 86 ~R~g~ 90 (94)
T 1vb7_A 86 DRSSG 90 (94)
T ss_dssp ECCCC
T ss_pred EECCc
Confidence 98764
No 125
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-13 Score=87.87 Aligned_cols=88 Identities=35% Similarity=0.616 Sum_probs=75.0
Q ss_pred CCCCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 26 GHAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
...+...+.+.+...+|||++.+.... ..+++|..|.++|||+++ | |+.||+|++|||.++.++++.++..+++.
T Consensus 27 ~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~a-G~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~ 105 (121)
T 2kom_A 27 KIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQD-GRLKAGDRLIEVNGVDLVGKSQEEVVSLLRS 105 (121)
T ss_dssp CSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHH-TCCCSSSEEEEETTEECTTSCHHHHHHHHHH
T ss_pred cCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Confidence 335666778888888999999876432 257999999999999999 6 99999999999999999999999999987
Q ss_pred C--CCeEEEEEEECC
Q psy12579 102 A--QRSVKLVVRYTP 114 (138)
Q Consensus 102 ~--~~~v~l~v~r~~ 114 (138)
. +..+.|+|.|+.
T Consensus 106 ~~~g~~v~l~v~R~g 120 (121)
T 2kom_A 106 TKMEGTVSLLVFRQE 120 (121)
T ss_dssp CCSSCEEEEEEEECC
T ss_pred CCCCCEEEEEEEeCC
Confidence 4 788999998864
No 126
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.56 E-value=1.7e-14 Score=89.01 Aligned_cols=84 Identities=21% Similarity=0.378 Sum_probs=74.3
Q ss_pred CCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 26 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
.+.+...+.+.+...+|||.+... .+++|..|.+++||+++ ||+.||+|++|||..+.++++.++..+++..+..
T Consensus 12 ~~~~~~~v~l~~~~~g~G~~~~~~----~~~~V~~V~~~spA~~a-GL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~ 86 (100)
T 1whd_A 12 ENGEKLQITIRRGKDGFGFTICCD----SPVRVQAVDSGGPAERA-GLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE 86 (100)
T ss_dssp CCCEEEEEEEECCSSSSSCBCCCS----SSCBCCBCCTTSHHHHH-TCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSE
T ss_pred cccceEEEEEECCCCeeeEEEeCC----CCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 345667788888888999998763 56899999999999999 8999999999999999999999999999988888
Q ss_pred EEEEEEECC
Q psy12579 106 VKLVVRYTP 114 (138)
Q Consensus 106 v~l~v~r~~ 114 (138)
+.|+|.|+.
T Consensus 87 v~l~v~R~~ 95 (100)
T 1whd_A 87 IILLVWRVS 95 (100)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999998874
No 127
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.56 E-value=1.7e-14 Score=89.12 Aligned_cols=88 Identities=38% Similarity=0.623 Sum_probs=73.0
Q ss_pred CCCCCcEEEEEecC--CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 25 EGHAHPRVVELPKT--DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 25 ~~~~~~~~v~l~~~--~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
..+.+.+++.+.+. ..+|||++.+..+...+++|..|.+++||+++ ||+.||+|++|||..+.++.+.++...++.
T Consensus 4 ~~~~~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~~- 81 (101)
T 1uez_A 4 GSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLARVTHAEAVKALKG- 81 (101)
T ss_dssp CCSCCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHH-TCCSSCCEEEETTEECSSCCHHHHHHHSSS-
T ss_pred CCCCccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHhhcC-
Confidence 44567888888873 47899999987665678999999999999999 899999999999999999988776665543
Q ss_pred CCeEEEEEEECC
Q psy12579 103 QRSVKLVVRYTP 114 (138)
Q Consensus 103 ~~~v~l~v~r~~ 114 (138)
+..+.|+|.|+.
T Consensus 82 ~~~v~l~v~R~g 93 (101)
T 1uez_A 82 SKKLVLSVYSAG 93 (101)
T ss_dssp SSSCCEEECCCC
T ss_pred CCeEEEEEEECC
Confidence 467888888765
No 128
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.56 E-value=4.8e-14 Score=87.53 Aligned_cols=86 Identities=26% Similarity=0.400 Sum_probs=71.9
Q ss_pred cCCCCCcEEEEEecCC-CCcCeEEeccC-------CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579 24 SEGHAHPRVVELPKTD-EGLGFNVMGGK-------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA 95 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~-------~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~ 95 (138)
+..++.++.+.+.+.. .+|||++.+.. +...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++
T Consensus 10 p~s~~~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~ 88 (104)
T 2z17_A 10 DFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCA-GLQAGDVLANINGVSTEGFTYKQV 88 (104)
T ss_dssp -CCCSCCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHH-TCCTTCBCCEETTEECTTCCHHHH
T ss_pred cCCCCcceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHc-CCCCCCEEEEECCEEcCCCCHHHH
Confidence 3455677888898864 68999998732 22457999999999999999 899999999999999998899999
Q ss_pred HHHHHhCCCeEEEEE
Q psy12579 96 VELLKQAQRSVKLVV 110 (138)
Q Consensus 96 ~~~l~~~~~~v~l~v 110 (138)
..+++..++.+.|+|
T Consensus 89 ~~~l~~~~~~v~l~v 103 (104)
T 2z17_A 89 VDLIRSSGNLLTIET 103 (104)
T ss_dssp HHHHHHTTTEEEEEC
T ss_pred HHHHHhCCCcEEEEE
Confidence 999998877777764
No 129
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.56 E-value=5.5e-14 Score=89.74 Aligned_cols=87 Identities=28% Similarity=0.468 Sum_probs=75.0
Q ss_pred CCcEEEEEecCC-CCcCeEEeccC----CCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~----~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
.++++|.+.++. .+|||++.++. +...+++|..|.+++||+++ + |+.||+|++||+..+.++++.++..+++.
T Consensus 14 ~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~a-G~L~~GD~I~~ing~~v~~~~~~~~~~~l~~ 92 (122)
T 1v5q_A 14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERC-GVLQIGDRVMAINGIPTEDSTFEEANQLLRD 92 (122)
T ss_dssp EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHS-CCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred ceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 567888898875 89999999752 12456899999999999999 7 99999999999999999889999999987
Q ss_pred C--CCeEEEEEEECCc
Q psy12579 102 A--QRSVKLVVRYTPK 115 (138)
Q Consensus 102 ~--~~~v~l~v~r~~~ 115 (138)
. +..+.|+|.|+..
T Consensus 93 ~~~g~~v~l~v~R~~~ 108 (122)
T 1v5q_A 93 SSITSKVTLEIEFDVA 108 (122)
T ss_dssp HTTTTCEEEEEEEECC
T ss_pred CCCCCeEEEEEEECCc
Confidence 5 6799999998753
No 130
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.56 E-value=8.4e-14 Score=84.91 Aligned_cols=85 Identities=26% Similarity=0.480 Sum_probs=69.9
Q ss_pred CCcEEEEEecCCC---CcCeEEeccCC-CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 28 AHPRVVELPKTDE---GLGFNVMGGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 28 ~~~~~v~l~~~~~---~~G~~l~~~~~-~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
..++.|++.+.+. +|||++..... ...+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..++++
T Consensus 5 ~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~a-GL~~GD~Il~vng~~v~~~~~~~l~~~l~~-- 81 (94)
T 3kzd_A 5 KVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKK-GLKAGDEILEINNRAADALNSSMLKDFLSQ-- 81 (94)
T ss_dssp CEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHT-TCCTTCEEEEETTEEGGGCCHHHHHHHHHS--
T ss_pred cceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhC--
Confidence 4568899998763 79999987432 2357999999999999999 999999999999999999999999998874
Q ss_pred CeEEEEEEECCc
Q psy12579 104 RSVKLVVRYTPK 115 (138)
Q Consensus 104 ~~v~l~v~r~~~ 115 (138)
..+.++|+.-|+
T Consensus 82 ~~l~ltV~~~p~ 93 (94)
T 3kzd_A 82 PSLGLLVRTYPE 93 (94)
T ss_dssp SEEEEEEEECCC
T ss_pred CeEEEEEEecCC
Confidence 578888887664
No 131
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.56 E-value=8.7e-14 Score=89.14 Aligned_cols=87 Identities=23% Similarity=0.437 Sum_probs=72.3
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeE
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSV 106 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v 106 (138)
..+.+. .....+|||.+.++. ..+++|..|.++|||+++ ||+.||+|++|||..+.++++.++..++.. .+..+
T Consensus 29 ~~~~~~-~~~~~~lG~~l~~~~--~~gv~V~~V~~gspA~~a-GL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v 104 (124)
T 3tsv_A 29 SMKLVK-FRKGDSVGLRLAGGN--DVGIFVAGVLEDSPAAKE-GLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV 104 (124)
T ss_dssp CCEEEE-EECSSCCCEEEEECT--TSCEEEEEECTTCHHHHT-TCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEE
T ss_pred CeEEEE-cCCCCceeEEEecCC--CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEE
Confidence 334333 344578999998754 467999999999999999 899999999999999999999999998874 67899
Q ss_pred EEEEEECCchHHH
Q psy12579 107 KLVVRYTPKVLEE 119 (138)
Q Consensus 107 ~l~v~r~~~~~~~ 119 (138)
.|++.|++..++.
T Consensus 105 ~l~v~R~~~~~~~ 117 (124)
T 3tsv_A 105 TILAQKKKDVYRR 117 (124)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEEECCchhhh
Confidence 9999999866543
No 132
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.55 E-value=9e-14 Score=95.58 Aligned_cols=89 Identities=33% Similarity=0.491 Sum_probs=78.2
Q ss_pred CCCCcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 26 GHAHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 26 ~~~~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
.+..++.+.+.+. +.+|||++.++.+...+++|..|.+++||+++++|+.||+|++|||..+.++++.++..+++..+.
T Consensus 4 ~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~ 83 (200)
T 2qt5_A 4 SFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGE 83 (200)
T ss_dssp CCEEEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCS
T ss_pred ccCCCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 3456677888764 478999999887666789999999999999988999999999999999999999999999988899
Q ss_pred eEEEEEEECC
Q psy12579 105 SVKLVVRYTP 114 (138)
Q Consensus 105 ~v~l~v~r~~ 114 (138)
.+.|++.|+.
T Consensus 84 ~v~l~v~R~~ 93 (200)
T 2qt5_A 84 RVVLEVEYEL 93 (200)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEeccC
Confidence 9999998864
No 133
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.55 E-value=1e-13 Score=89.06 Aligned_cols=89 Identities=29% Similarity=0.515 Sum_probs=76.5
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ- 103 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~- 103 (138)
.....++.+.+.++..+|||.+.+..+ ..+++|..|.++|||+++ ||+.||.|++|||..+.++++.++..+++...
T Consensus 5 ~~~~~~r~v~l~~~~~g~G~~l~~~~~-~~gv~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~ 82 (128)
T 2kjd_A 5 FTMLRPRLCTMKKGPSGYGFNLHSDKS-KPGQFIRSVDPDSPAEAS-GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD 82 (128)
T ss_dssp TTTCCCEEEEEECCSSSCCEEEEECSS-SCSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTTCS
T ss_pred CCCCCcEEEEEecCCCcccEEEEecCC-CCCEEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 345688999999999999999987643 347999999999999999 89999999999999999988999999998864
Q ss_pred CeEEEEEEECCc
Q psy12579 104 RSVKLVVRYTPK 115 (138)
Q Consensus 104 ~~v~l~v~r~~~ 115 (138)
..+.+++.|+..
T Consensus 83 ~~~~l~v~R~g~ 94 (128)
T 2kjd_A 83 ETKLLVVDRETD 94 (128)
T ss_dssp EEEEEEECHHHH
T ss_pred CEEEEEEEeCCc
Confidence 456688887654
No 134
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.54 E-value=8e-14 Score=86.97 Aligned_cols=82 Identities=26% Similarity=0.327 Sum_probs=70.6
Q ss_pred cEEEEEec-CCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579 30 PRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108 (138)
Q Consensus 30 ~~~v~l~~-~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l 108 (138)
..+|+|.+ ...++||++.+. ..+++|..|.++|||+++|.|+.||.|++|||.++.+.++.++..+++..++.+.|
T Consensus 3 ~~~v~L~k~~~~glG~~i~~~---~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l 79 (106)
T 2la8_A 3 KFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSM 79 (106)
T ss_dssp EEEEEECCBSSSTTCCEEEEC---SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEE
T ss_pred EEEEEEEeCCCCccCEEEEeC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Confidence 35677864 557899998772 46799999999999999933999999999999999999999999999988888999
Q ss_pred EEEECC
Q psy12579 109 VVRYTP 114 (138)
Q Consensus 109 ~v~r~~ 114 (138)
++.|..
T Consensus 80 ~v~R~~ 85 (106)
T 2la8_A 80 EVTRPK 85 (106)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 998864
No 135
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.54 E-value=3e-13 Score=82.89 Aligned_cols=86 Identities=22% Similarity=0.390 Sum_probs=72.9
Q ss_pred cCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-
Q psy12579 24 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA- 102 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~- 102 (138)
.....+...+.+.++..+|||++... ..+++|..|.++ |+.+ +|+.||+|++|||.++.++++.++..+++..
T Consensus 5 ~~~~~~~~~v~l~~~~~g~G~~i~~~---~~Gv~V~~v~~~--a~~a-GL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~ 78 (96)
T 1ujv_A 5 SSGQAELMTLTIVKGAQGFGFTIADS---PTGQRVKQILDI--QGCP-GLCEGDLIVEINQQNVQNLSHTEVVDILKDCP 78 (96)
T ss_dssp CCCCCCCEEEEEECCSSSSSEEEEEE---TTEEEEEEESCG--GGST-TCCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred CCCCceEEEEEEEeCCCceeEEEEcC---CCCEEEEEEecc--cccC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 34456788899999999999999753 346999999983 5566 9999999999999999999999999999984
Q ss_pred -CCeEEEEEEECCc
Q psy12579 103 -QRSVKLVVRYTPK 115 (138)
Q Consensus 103 -~~~v~l~v~r~~~ 115 (138)
+..+.|+|.|+..
T Consensus 79 ~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 79 IGSETSLIIHRGSG 92 (96)
T ss_dssp TTSEEEEEEECCSS
T ss_pred CCCEEEEEEEECCC
Confidence 6889999998753
No 136
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.53 E-value=1.3e-13 Score=87.01 Aligned_cols=87 Identities=33% Similarity=0.505 Sum_probs=75.9
Q ss_pred CCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 27 HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 27 ~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
...++++.+.+.. ..|||.+....+ ..+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..+++..+..
T Consensus 11 ~ldp~~~~l~~~~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~ 88 (114)
T 2edz_A 11 TFNPRECKLSKQEGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKA-GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNS 88 (114)
T ss_dssp CCCCEEEEEECCTTCCCSCEEECCTT-CCSCEEECCCTTCTTGGG-TCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSE
T ss_pred cCCCEEEEEeCCCCCcccEEEEEecC-CCCeEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence 3478889998764 789999987533 457999999999999999 8999999999999999999999999999888899
Q ss_pred EEEEEEECCc
Q psy12579 106 VKLVVRYTPK 115 (138)
Q Consensus 106 v~l~v~r~~~ 115 (138)
+.|++.|+..
T Consensus 89 v~l~v~R~~~ 98 (114)
T 2edz_A 89 VTLLVLDGDS 98 (114)
T ss_dssp EEEEEECHHH
T ss_pred EEEEEEECCc
Confidence 9999998753
No 137
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.53 E-value=2.3e-13 Score=85.73 Aligned_cols=85 Identities=33% Similarity=0.553 Sum_probs=72.5
Q ss_pred CCCcEEEEEec-CCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 27 HAHPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 27 ~~~~~~v~l~~-~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
....+++.+.+ +..+|||++.++.+...+++|..|.++++|+.+ ||+.||+|++|||.++.++.+.++..+++.. ..
T Consensus 13 ~~~~~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~a-GL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~ 90 (114)
T 1x5n_A 13 ENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RS 90 (114)
T ss_dssp CCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTT-TCCTTCEEEEETTEETTSCCTTHHHHHHHHC-SS
T ss_pred CCCcEEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcC-Ce
Confidence 35567788855 457899999987655678999999999999999 8999999999999999999887888888765 68
Q ss_pred EEEEEEEC
Q psy12579 106 VKLVVRYT 113 (138)
Q Consensus 106 v~l~v~r~ 113 (138)
+.|++.|+
T Consensus 91 v~l~v~r~ 98 (114)
T 1x5n_A 91 LTISIVAA 98 (114)
T ss_dssp EEEEECSS
T ss_pred EEEEEEcC
Confidence 89999887
No 138
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.53 E-value=5.4e-14 Score=90.29 Aligned_cols=83 Identities=25% Similarity=0.313 Sum_probs=73.0
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCe
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~ 105 (138)
.....+.+.++..+|||++.+. ..+++|..|.+++||+++|.|+.||.|++|||..+.+.++.++..+++. .+..
T Consensus 26 ~~~~~~~l~k~~~glG~~i~~~---~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~ 102 (126)
T 1wif_A 26 NKVIQTKLTVGNLGLGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTV 102 (126)
T ss_dssp CCEEEEEEECCTTCCCCCEEEE---TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCE
T ss_pred CceEEEEEecCCceEeEEEEcC---CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCE
Confidence 4667788898889999999863 3468999999999999993399999999999999998899999999987 4788
Q ss_pred EEEEEEEC
Q psy12579 106 VKLVVRYT 113 (138)
Q Consensus 106 v~l~v~r~ 113 (138)
+.|+|.|+
T Consensus 103 v~l~V~R~ 110 (126)
T 1wif_A 103 LQIKAYRG 110 (126)
T ss_dssp EEEEEESS
T ss_pred EEEEEEEC
Confidence 99999987
No 139
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.52 E-value=1.2e-14 Score=91.51 Aligned_cols=86 Identities=28% Similarity=0.418 Sum_probs=73.7
Q ss_pred ccCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 23 ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 23 ~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
....+..+++|++.+++.+|||.+.+ ..+++|..|.++++|+++ ||+.||+|++|||..+.++++.++..+++..
T Consensus 9 ~~~~~~~~r~v~l~~~~~~~G~~l~~----~~~v~V~~V~~~spA~~a-GL~~GD~Il~InG~~v~~~~~~d~~~~i~~~ 83 (111)
T 1vae_A 9 ASKRWSPPRGIHFTVEEGDLGFTLRG----NTPVQVHFLDPHCSASLA-GAKEGDYIVSIQGVDCKWLTVSEVMKLLKSF 83 (111)
T ss_dssp CCCEECCCCCCCEECCSSCCSCCEES----SSSCEECCCCTTSSHHHH-HCCTTCEEEEETTEECSSCCHHHHHHHHHHT
T ss_pred cccCCCCCeEEEEEcCCCcccEEEeC----CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 33445678889999988999999976 346899999999999999 9999999999999999988999999999887
Q ss_pred CC-eEEEEEEEC
Q psy12579 103 QR-SVKLVVRYT 113 (138)
Q Consensus 103 ~~-~v~l~v~r~ 113 (138)
++ .+.|+|.+.
T Consensus 84 ~~~~v~l~V~~~ 95 (111)
T 1vae_A 84 GGEEVEMKVVSL 95 (111)
T ss_dssp TTSEECEEEECE
T ss_pred CCceEEEEEEec
Confidence 54 588888765
No 140
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.51 E-value=2.3e-13 Score=82.05 Aligned_cols=77 Identities=27% Similarity=0.466 Sum_probs=65.9
Q ss_pred EEEec--CCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579 33 VELPK--TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110 (138)
Q Consensus 33 v~l~~--~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v 110 (138)
+.+.+ ....|||.+.+ +++|..|.++|+|+++|.|+.||+|++|||.++.++++.++..+++..++.+.|++
T Consensus 4 v~l~~~~~~~~~G~~~~~------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v 77 (88)
T 3e17_A 4 VLLMKSRANEEYGLRLGS------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77 (88)
T ss_dssp EEEECBTTBCCCCEEEEE------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEeCCCCCCCCEEEeC------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 45544 33689999875 59999999999999994499999999999999999999999999999999999999
Q ss_pred EECCc
Q psy12579 111 RYTPK 115 (138)
Q Consensus 111 ~r~~~ 115 (138)
.+.+.
T Consensus 78 ~~~~~ 82 (88)
T 3e17_A 78 LRDLE 82 (88)
T ss_dssp CCC--
T ss_pred eCCCc
Confidence 87654
No 141
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=9.1e-14 Score=87.82 Aligned_cols=86 Identities=26% Similarity=0.505 Sum_probs=71.8
Q ss_pred CCcEEEEEecCCC---CcCeEEeccCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 28 AHPRVVELPKTDE---GLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 28 ~~~~~v~l~~~~~---~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
..++.+.+.+.+. +|||++.+..+.. .+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++.
T Consensus 14 ~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~a-GL~~GD~Il~Ing~~v~~~~~~~~~~~l~~-- 90 (114)
T 2d8i_A 14 KVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKK-GLKAGDEILEINNRAADALNSSMLKDFLSQ-- 90 (114)
T ss_dssp CEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHH-TCCTTCCEEEESSCBGGGCCHHHHHHHHTS--
T ss_pred CceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHHhC--
Confidence 3567889988764 7999998744322 46999999999999999 899999999999999999888888888875
Q ss_pred CeEEEEEEECCch
Q psy12579 104 RSVKLVVRYTPKV 116 (138)
Q Consensus 104 ~~v~l~v~r~~~~ 116 (138)
..+.|+|.|.+..
T Consensus 91 ~~v~l~v~R~p~~ 103 (114)
T 2d8i_A 91 PSLGLLVRTYPEL 103 (114)
T ss_dssp SEEEEEEEECCCS
T ss_pred CcEEEEEEECCCC
Confidence 3899999998743
No 142
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.50 E-value=2.5e-13 Score=103.96 Aligned_cols=89 Identities=24% Similarity=0.438 Sum_probs=79.4
Q ss_pred cEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEE
Q psy12579 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVK 107 (138)
Q Consensus 30 ~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~ 107 (138)
++.|++.++ .+|||++.++. ..|++|..|.+||||+++ ||+.||+|++|||..+.++++.++..+++. .+..+.
T Consensus 2 ~r~V~l~k~-~~lG~~i~gg~--~~Gi~V~~V~~gspA~~a-GL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~ 77 (468)
T 3shw_A 2 MKLVKFRKG-DSVGLRLAGGN--DVGIFVAGVLEDSPAAKE-GLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVT 77 (468)
T ss_dssp EEEEEEECC-SSCCEEEEEET--TTEEEEEEECSSSHHHHT-TCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEE
T ss_pred ceEEEEecC-CccceEEEccC--cCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEE
Confidence 578888886 88999998875 467999999999999999 799999999999999999999999999998 788999
Q ss_pred EEEEECCchHHHHHH
Q psy12579 108 LVVRYTPKVLEEMEM 122 (138)
Q Consensus 108 l~v~r~~~~~~~~~~ 122 (138)
|++.|++..+..+..
T Consensus 78 L~V~r~g~~~~~~~~ 92 (468)
T 3shw_A 78 ILAQKKKDVYRRIVE 92 (468)
T ss_dssp EEEEECHHHHHHHHH
T ss_pred EEEEECCccchhhhc
Confidence 999999877766543
No 143
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.50 E-value=2.7e-13 Score=88.50 Aligned_cols=88 Identities=31% Similarity=0.491 Sum_probs=73.1
Q ss_pred CCcEEEEEecCC----CCcCeEEeccCC------------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy12579 28 AHPRVVELPKTD----EGLGFNVMGGKE------------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91 (138)
Q Consensus 28 ~~~~~v~l~~~~----~~~G~~l~~~~~------------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~ 91 (138)
...+.|.|.+.+ .+|||++.++.+ ...+++|..|.++|||+++ ||+.||.|++|||.++.+++
T Consensus 22 ~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-GL~~GD~I~~vng~~v~~~~ 100 (139)
T 2vz5_A 22 SMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA-GLQIGDKIMQVNGWDMTMVT 100 (139)
T ss_dssp CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCC
T ss_pred CceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHC-CCCCCCEEEEECCEEcCCCC
Confidence 456778887744 379999987543 1368999999999999999 89999999999999999989
Q ss_pred HHHHHHHHHh-CCCeEEEEEEECCch
Q psy12579 92 HGKAVELLKQ-AQRSVKLVVRYTPKV 116 (138)
Q Consensus 92 ~~~~~~~l~~-~~~~v~l~v~r~~~~ 116 (138)
+.++..+++. .+..+.|+|.|++..
T Consensus 101 ~~~~~~~l~~~~g~~v~l~v~R~g~~ 126 (139)
T 2vz5_A 101 HDQARKRLTKRSEEVVRLLVTRQSLQ 126 (139)
T ss_dssp HHHHHHHHCCTTCSEEEEEEEECC--
T ss_pred HHHHHHHHHhCCCCEEEEEEEECCEE
Confidence 9999999987 467899999998643
No 144
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.49 E-value=5e-13 Score=82.80 Aligned_cols=81 Identities=35% Similarity=0.559 Sum_probs=66.7
Q ss_pred EEEEecCC----CCcCeEEeccCCC------------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579 32 VVELPKTD----EGLGFNVMGGKEQ------------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA 95 (138)
Q Consensus 32 ~v~l~~~~----~~~G~~l~~~~~~------------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~ 95 (138)
.+++.+.. .+|||++.++.+. ..+++|..|.++|||+++ ||+.||.|++|||.++.+.++.++
T Consensus 7 ~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~ 85 (104)
T 3sfj_A 7 RVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA-GLQIGDKIMQVNGWDMTMVTHDQA 85 (104)
T ss_dssp EEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHH
T ss_pred EEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHH
Confidence 45555532 2599999965532 457999999999999999 899999999999999999999999
Q ss_pred HHHHHh-CCCeEEEEEEEC
Q psy12579 96 VELLKQ-AQRSVKLVVRYT 113 (138)
Q Consensus 96 ~~~l~~-~~~~v~l~v~r~ 113 (138)
...++. .+..+.|++.|.
T Consensus 86 ~~~l~~~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 86 RKRLTKRSEEVVRLLVTRQ 104 (104)
T ss_dssp HHHHTCTTCSEEEEEEEEC
T ss_pred HHHHHhCCCCEEEEEEEcC
Confidence 999976 467899988773
No 145
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=99.24 E-value=2e-15 Score=95.18 Aligned_cols=87 Identities=46% Similarity=0.704 Sum_probs=73.6
Q ss_pred CCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 26 GHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 26 ~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
....++++.+.+.. .+|||++.++.+...+++|..|.++|||+++++|++||+|++|||.++.+.++.++..+++..++
T Consensus 24 ~~~~~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~ 103 (112)
T 2lob_A 24 YFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG 103 (112)
Confidence 34567788887765 78999999876656689999999999999933999999999999999999889999999988777
Q ss_pred eEEEEEEE
Q psy12579 105 SVKLVVRY 112 (138)
Q Consensus 105 ~v~l~v~r 112 (138)
.+.|+|.+
T Consensus 104 ~v~l~V~~ 111 (112)
T 2lob_A 104 EIEFEVVY 111 (112)
Confidence 78777653
No 146
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.49 E-value=6.9e-13 Score=80.37 Aligned_cols=77 Identities=27% Similarity=0.475 Sum_probs=64.3
Q ss_pred CcEEEEEec--CCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 29 HPRVVELPK--TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 29 ~~~~v~l~~--~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
+.+.+.+.+ ...+|||.+.+ + +|..|.++|+|+++ ||+.||.|++|||.++.+.++.++..+++..+..+
T Consensus 11 ~~~~~~i~~~~~~~~lG~~~~~------G-~V~~V~~~spA~~a-GL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v 82 (90)
T 1y7n_A 11 NVTTVLIRRPDLRYQLGFSVQN------G-IICSLMRGGIAERG-GVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEI 82 (90)
T ss_dssp SCEEEEEEESSTTSCCCEEEET------T-EEEEECTTSHHHHH-TCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEE
T ss_pred CcceEEEEeCCCccccCeEecC------C-EEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 334444444 44789999864 2 89999999999999 89999999999999999999999999999888889
Q ss_pred EEEEEEC
Q psy12579 107 KLVVRYT 113 (138)
Q Consensus 107 ~l~v~r~ 113 (138)
.|++.+.
T Consensus 83 ~l~v~p~ 89 (90)
T 1y7n_A 83 HMKTMPA 89 (90)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 8888753
No 147
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.49 E-value=3.1e-14 Score=88.28 Aligned_cols=83 Identities=30% Similarity=0.459 Sum_probs=71.5
Q ss_pred EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110 (138)
Q Consensus 31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v 110 (138)
+++.+ ++..+|||++.++.+...+++|..|.+++||+++ +|+.||+|++||+.++.++++.++..+++..+..+.|+|
T Consensus 7 ~~v~~-~~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 84 (103)
T 1v5l_A 7 GNVVL-PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAA-NLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI 84 (103)
T ss_dssp BCCEE-ESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGG-TCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEE
T ss_pred EEEEE-cCCCCcCEEEeccccCCCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 33444 3557899999987655557999999999999999 999999999999999999889999999988888999999
Q ss_pred EECCc
Q psy12579 111 RYTPK 115 (138)
Q Consensus 111 ~r~~~ 115 (138)
.|+..
T Consensus 85 ~R~g~ 89 (103)
T 1v5l_A 85 DRAET 89 (103)
T ss_dssp CCCTT
T ss_pred EECCe
Confidence 98864
No 148
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.46 E-value=2.4e-12 Score=80.73 Aligned_cols=84 Identities=31% Similarity=0.448 Sum_probs=71.8
Q ss_pred EEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEE
Q psy12579 31 RVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGL-KRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVK 107 (138)
Q Consensus 31 ~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl-~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~v~ 107 (138)
.+|++.++ ..+|||.+.+..+ ..+++|..|.++|||+++ |+ +.||.|++|||..+.++++.++..+++.. +..+.
T Consensus 3 ~~v~l~~~~~~glG~~~~~~~~-~~~~~V~~v~~~spA~~a-Gll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~ 80 (112)
T 1qau_A 3 ISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQS-GLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV 80 (112)
T ss_dssp EEEEEECBTTTBTSEEEEECSS-SSCEEEEEECTTSHHHHH-TCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEE
T ss_pred EEEEEEcCCCCceeEEEEecCC-CCCEEEEEeCCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEE
Confidence 46788776 4789999987543 457999999999999999 87 99999999999999998899999999874 67899
Q ss_pred EEEEECCch
Q psy12579 108 LVVRYTPKV 116 (138)
Q Consensus 108 l~v~r~~~~ 116 (138)
|++.|++..
T Consensus 81 l~v~R~g~~ 89 (112)
T 1qau_A 81 VLILRGPEG 89 (112)
T ss_dssp EEEEECCTT
T ss_pred EEEEeCCcc
Confidence 999998753
No 149
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.45 E-value=6.3e-13 Score=106.81 Aligned_cols=91 Identities=38% Similarity=0.640 Sum_probs=80.6
Q ss_pred CCCCCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12579 25 EGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99 (138)
Q Consensus 25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l 99 (138)
....++++|.|.++..+|||+|.+|.+. ..+++|..|.+||||+++|.|+.||+|++|||..+.++++.++..++
T Consensus 55 ~~~~~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l 134 (721)
T 2xkx_A 55 EGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL 134 (721)
T ss_pred CCCceEEEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence 3446778899999989999999998754 56799999999999999944999999999999999999999999999
Q ss_pred HhCCCeEEEEEEECCc
Q psy12579 100 KQAQRSVKLVVRYTPK 115 (138)
Q Consensus 100 ~~~~~~v~l~v~r~~~ 115 (138)
+..+..+.|+|.|...
T Consensus 135 ~~~g~~v~l~v~R~~~ 150 (721)
T 2xkx_A 135 KEAGSIVRLYVMRRKP 150 (721)
T ss_pred hccccccceEEEeccc
Confidence 9889999999988753
No 150
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.45 E-value=3e-12 Score=82.19 Aligned_cols=88 Identities=39% Similarity=0.547 Sum_probs=73.2
Q ss_pred CCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 27 HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 27 ~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
..+.+++.+.... ..|||++.++.+...+++|..|.+++||+++ ||+.||.|++|||..+.++.+.++...++. +..
T Consensus 18 ~g~~~~v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~a-GL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~ 95 (128)
T 1uf1_A 18 GGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS-GLKVGDQILEVNGRSFLNILHDEAVRLLKS-SRH 95 (128)
T ss_dssp CSSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHH-TCCTTCEEEEETTEECSSCCHHHHHHHHTT-CSE
T ss_pred CCcEEEEEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCe
Confidence 3466777777544 6799999886655568999999999999999 899999999999999999988888877766 468
Q ss_pred EEEEEEECCch
Q psy12579 106 VKLVVRYTPKV 116 (138)
Q Consensus 106 v~l~v~r~~~~ 116 (138)
+.|+|.|+...
T Consensus 96 v~l~v~R~g~~ 106 (128)
T 1uf1_A 96 LILTVKDVGRL 106 (128)
T ss_dssp EEEEEECCSCC
T ss_pred EEEEEEECCcc
Confidence 99999988643
No 151
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.45 E-value=1.6e-12 Score=88.92 Aligned_cols=72 Identities=36% Similarity=0.656 Sum_probs=65.5
Q ss_pred CCCcCeEEeccCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579 39 DEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110 (138)
Q Consensus 39 ~~~~G~~l~~~~~--------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v 110 (138)
+.+|||+|.|+.+ ...+++|..|.+++||++ +|+.||.|++|||..+.++++.++..+++..+..+.|+|
T Consensus 1 ~~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~--gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 78 (195)
T 2qbw_A 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 78 (195)
T ss_dssp CCCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEE
T ss_pred CCcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh--CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 3579999999753 256899999999999998 899999999999999999999999999999988999999
Q ss_pred EE
Q psy12579 111 RY 112 (138)
Q Consensus 111 ~r 112 (138)
.|
T Consensus 79 ~r 80 (195)
T 2qbw_A 79 VR 80 (195)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 152
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=94.94 Aligned_cols=87 Identities=30% Similarity=0.538 Sum_probs=75.9
Q ss_pred CCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 26 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
....++.|+|.++..+|||.+.++.+ ..+++|..|.++++|+.+ ||+.||+|++|||..+.++++.++..+++..+..
T Consensus 6 ~~~~~r~v~l~k~~~glG~~l~~~~~-~~gv~V~~V~~gSpA~~a-GL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~ 83 (216)
T 2krg_A 6 TMLRPRLCTMKKGPSGYGFNLHSDKS-KPGQFIRSVDPDSPAEAS-GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE 83 (216)
T ss_dssp TTCCCEEEEEECCSSSSCEEECCCSS-SCSCBEEEECTTSHHHHH-TCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSE
T ss_pred cccceEEEEEEeCCCCceEEEEecCC-CCCeEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCe
Confidence 34678999999999999999987643 347999999999999999 8999999999999999988899999998877778
Q ss_pred E-EEEEEECC
Q psy12579 106 V-KLVVRYTP 114 (138)
Q Consensus 106 v-~l~v~r~~ 114 (138)
+ .++|.|++
T Consensus 84 v~~l~V~R~g 93 (216)
T 2krg_A 84 TKLLVVDRET 93 (216)
T ss_dssp EEEEECCHHH
T ss_pred EEEEEEEECC
Confidence 8 88887765
No 153
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.44 E-value=2.8e-12 Score=78.76 Aligned_cols=81 Identities=21% Similarity=0.363 Sum_probs=69.2
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh---CCCe
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ---AQRS 105 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~---~~~~ 105 (138)
..+.+.+.....+|||.+... ..+++|..|.++|||+.+ ||++||.|++|||..+...+++++...++. .+..
T Consensus 17 ~~~~l~l~~~~~g~G~~l~~~---~~~~~I~~V~~gSpA~~A-GL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~ 92 (101)
T 3qik_A 17 LAKRLLILPQEEDYGFDIEEK---NKAVVVKSVQRGSLAEVA-GLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRP 92 (101)
T ss_dssp TEEEEEECCCSSSSSEEEEEE---TTEEEEEEECTTSHHHHH-TCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCC
T ss_pred ecCeEEEEeCCCcccEEEEcc---CCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCe
Confidence 345677777788999999863 346899999999999999 999999999999999987889999999876 5888
Q ss_pred EEEEEEEC
Q psy12579 106 VKLVVRYT 113 (138)
Q Consensus 106 v~l~v~r~ 113 (138)
+.|.|...
T Consensus 93 v~LLV~~~ 100 (101)
T 3qik_A 93 LRLLVATK 100 (101)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99988653
No 154
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.43 E-value=1.1e-12 Score=98.72 Aligned_cols=89 Identities=25% Similarity=0.460 Sum_probs=76.5
Q ss_pred CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCe
Q psy12579 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~ 105 (138)
..++.+.+.++. +|||++.++. ..+++|..|.+||||+++ ||+.||+|++|||.++.++++.++..+++. .|..
T Consensus 8 ~~~~~v~~~k~~-~lG~~i~gg~--~~gi~V~~V~~gspA~~a-GL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~ 83 (391)
T 3tsz_A 8 PSMKLVKFRKGD-SVGLRLAGGN--DVGIFVAGVLEDSPAAKE-GLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE 83 (391)
T ss_dssp -CEEEEEEECCS-SCCEEEEEET--TTEEEEEEECTTCHHHHT-TCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSE
T ss_pred CCcEEEEeecCC-ceeEEEEecC--CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCe
Confidence 456777777764 6999999865 468999999999999999 799999999999999999999999999985 6889
Q ss_pred EEEEEEECCchHHHH
Q psy12579 106 VKLVVRYTPKVLEEM 120 (138)
Q Consensus 106 v~l~v~r~~~~~~~~ 120 (138)
+.|++.|++..+..+
T Consensus 84 v~l~v~r~~~~~~~~ 98 (391)
T 3tsz_A 84 VTILAQKKKDVYRRI 98 (391)
T ss_dssp EEEEEEECHHHHGGG
T ss_pred EEEEEeeCCcccccc
Confidence 999999997655443
No 155
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.43 E-value=1.8e-12 Score=88.29 Aligned_cols=87 Identities=37% Similarity=0.593 Sum_probs=73.4
Q ss_pred CcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ 103 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~ 103 (138)
...++.+.+...+|||++.++.+. ..+++|..|.++|+|+++|.|+.||+|++|||.++.++++.++..+++..+
T Consensus 100 ~~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 179 (196)
T 3gsl_A 100 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY 179 (196)
T ss_dssp EEEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCC
T ss_pred ccEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCC
Confidence 344566666677899999875432 247999999999999999339999999999999999999999999999888
Q ss_pred CeEEEEEEECCc
Q psy12579 104 RSVKLVVRYTPK 115 (138)
Q Consensus 104 ~~v~l~v~r~~~ 115 (138)
..+.|+|.|+..
T Consensus 180 ~~v~l~v~R~~~ 191 (196)
T 3gsl_A 180 DVVYLKVAKPSN 191 (196)
T ss_dssp EEEEEEEEEESC
T ss_pred CeEEEEEeCCCC
Confidence 899999998754
No 156
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.42 E-value=2.6e-12 Score=88.07 Aligned_cols=87 Identities=28% Similarity=0.459 Sum_probs=75.5
Q ss_pred CCcEEEEEecCC-CCcCeEEeccCCC----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~~~----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~ 101 (138)
.+.++|.+.++. .+|||++.++.+. ..+++|..|.++|||+++ | |+.||.|++|||..+.++++.++..+++.
T Consensus 5 ~~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~ 83 (196)
T 1p1d_A 5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERC-GVLQIGDRVMAINGIPTEDSTFEEANQLLRD 83 (196)
T ss_dssp CEEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHT-SCCCSSCCEEEETTBCSTTSCHHHHHHHHHT
T ss_pred cEEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 466788898875 8999999987432 356899999999999999 7 99999999999999998889999999988
Q ss_pred C--CCeEEEEEEECCc
Q psy12579 102 A--QRSVKLVVRYTPK 115 (138)
Q Consensus 102 ~--~~~v~l~v~r~~~ 115 (138)
. +..+.|++.|+..
T Consensus 84 ~~~g~~v~l~v~R~~~ 99 (196)
T 1p1d_A 84 SSITSKVTLEIEFDVA 99 (196)
T ss_dssp CCSSSEEEEEEEECSC
T ss_pred CCCCCeEEEEEEecCC
Confidence 6 7789999998864
No 157
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.41 E-value=5.5e-12 Score=76.27 Aligned_cols=80 Identities=29% Similarity=0.510 Sum_probs=66.4
Q ss_pred CcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579 29 HPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS 105 (138)
Q Consensus 29 ~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~ 105 (138)
++..+.+.... ..|||.+. .+++|..|.++|+|+.+ | |+.||.|++|||.++.++++.++..+++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~g~~~~------~gv~V~~v~~~s~A~~a-G~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~ 74 (92)
T 3cyy_A 2 KPTKVTLVKSAKNEEYGLRLA------SHIFVKEISQDSLAARD-GNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGK 74 (92)
T ss_dssp CCEEEEEECSSTTSCCCEEEE------EEEEEEEECTTCHHHHS-CCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred CcEEEEEEeCCCCCCCCEEEe------CCEEEEEECCCChHHhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence 35567776644 57999876 25899999999999999 7 999999999999999988999999999888788
Q ss_pred EEEEEEECCc
Q psy12579 106 VKLVVRYTPK 115 (138)
Q Consensus 106 v~l~v~r~~~ 115 (138)
+.+++.|++.
T Consensus 75 v~l~v~r~g~ 84 (92)
T 3cyy_A 75 LKMVVQRDER 84 (92)
T ss_dssp EEEEEEC---
T ss_pred EEEEEEeCCc
Confidence 9999988764
No 158
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.40 E-value=1.4e-12 Score=83.66 Aligned_cols=88 Identities=30% Similarity=0.441 Sum_probs=75.5
Q ss_pred CCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHHHhC-C
Q psy12579 27 HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGL-KRGDQLLSVNGVSVEGEDHGKAVELLKQA-Q 103 (138)
Q Consensus 27 ~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl-~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~ 103 (138)
..+.+.|++.++. .+|||++....+ ..+++|..|.++|||+++ |+ +.||+|++|||..+.++++.++..+++.. +
T Consensus 6 ~~~~~~v~l~~~~~~glG~~~~~~~~-~~~~~V~~V~~~spA~~a-Gll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g 83 (127)
T 1b8q_A 6 EPNVISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQS-GLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS 83 (127)
T ss_dssp CCCSEEEEEECTTTSCCSCCEEECTT-SSCEEECCCSSSSSHHHH-SSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCS
T ss_pred CCceEEEEEEeCCCCcEeEEEEecCC-CCCEEEEEeCCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 3567889998876 799999987542 357999999999999999 77 99999999999999998899999999874 5
Q ss_pred CeEEEEEEECCch
Q psy12579 104 RSVKLVVRYTPKV 116 (138)
Q Consensus 104 ~~v~l~v~r~~~~ 116 (138)
..+.|++.|++..
T Consensus 84 ~~v~l~v~R~g~~ 96 (127)
T 1b8q_A 84 ETHVVLILRGPEG 96 (127)
T ss_dssp SCEEEEEECCCCS
T ss_pred CeEEEEEEeCCce
Confidence 7899999988653
No 159
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.40 E-value=3.5e-12 Score=102.53 Aligned_cols=95 Identities=39% Similarity=0.740 Sum_probs=83.3
Q ss_pred CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL 108 (138)
Q Consensus 29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l 108 (138)
.++.|.|.+...+|||++.++.+ ..+++|..|.++|+|+++|.|+.||+|++|||.++.++++.++..+++..+..+.|
T Consensus 307 ~~~~v~l~~~~~~lG~~i~~~~~-~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L 385 (721)
T 2xkx_A 307 EPRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 385 (721)
T ss_pred ceEEEEEEECCCCccEEEeccCC-CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEE
Confidence 56788898888899999987643 45899999999999999944999999999999999999999999999999999999
Q ss_pred EEEECCchHHHHHHHh
Q psy12579 109 VVRYTPKVLEEMEMRF 124 (138)
Q Consensus 109 ~v~r~~~~~~~~~~~~ 124 (138)
++.|++..+..++.++
T Consensus 386 ~v~r~~~~~~~~~~~~ 401 (721)
T 2xkx_A 386 IAQYKPEEYSRFEAKI 401 (721)
T ss_pred EEEeCchhhhhhhhhh
Confidence 9999998877665544
No 160
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.37 E-value=9.9e-12 Score=74.92 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=64.9
Q ss_pred EEEEecCC---CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeE
Q psy12579 32 VVELPKTD---EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSV 106 (138)
Q Consensus 32 ~v~l~~~~---~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v 106 (138)
.+.+.+.. ..|||++... ..+++|..|.++|||+.+ ||+.||.|++|||.++.+.++.++..++.. .+..+
T Consensus 6 ~~~~~~~~~~~~~lG~~~~~~---~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v 81 (90)
T 2eaq_A 6 RISINQTPGKSLDFGFTIKWD---IPGIFVASVEAGSPAEFS-QLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHL 81 (90)
T ss_dssp EEEEECCTTCSSCCSEEEEEE---TTEEEEEEECTTSHHHHT-TCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEE
T ss_pred EEEEEecCCCCCcccEEEEec---CCCEEEEEECCCChHHHc-CCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEE
Confidence 35555433 3699998753 357999999999999999 999999999999999977788888888875 47889
Q ss_pred EEEEEECC
Q psy12579 107 KLVVRYTP 114 (138)
Q Consensus 107 ~l~v~r~~ 114 (138)
.|++.|++
T Consensus 82 ~l~v~R~g 89 (90)
T 2eaq_A 82 VMDVRRYG 89 (90)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeCC
Confidence 99998864
No 161
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.35 E-value=8.2e-12 Score=85.74 Aligned_cols=87 Identities=38% Similarity=0.700 Sum_probs=73.0
Q ss_pred cEEEEEecCCCCcCeEEeccCCC----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579 30 PRVVELPKTDEGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR 104 (138)
Q Consensus 30 ~~~v~l~~~~~~~G~~l~~~~~~----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~ 104 (138)
...+.+.+....|||.+.++... ..+++|..|.++++|+++ | |+.||.|++|||.++.++++.++..+++..+.
T Consensus 107 ~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~a-G~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~ 185 (200)
T 2qt5_A 107 TVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADRE-GTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ 185 (200)
T ss_dssp EEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCS
T ss_pred EEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 34556666667899999876432 347899999999999999 6 99999999999999998899999999998888
Q ss_pred eEEEEEEECCchH
Q psy12579 105 SVKLVVRYTPKVL 117 (138)
Q Consensus 105 ~v~l~v~r~~~~~ 117 (138)
.+.|++.|++..+
T Consensus 186 ~v~l~v~R~~~~~ 198 (200)
T 2qt5_A 186 EATLLIEYDVSVM 198 (200)
T ss_dssp EEEEEEEEEEEC-
T ss_pred eEEEEEEECCccC
Confidence 9999999986543
No 162
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.34 E-value=1.5e-11 Score=84.67 Aligned_cols=81 Identities=26% Similarity=0.330 Sum_probs=68.6
Q ss_pred EEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579 31 RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109 (138)
Q Consensus 31 ~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 109 (138)
.++.+.+.. .+|||++... ..+++|..|.++|+|+++|+|+.||+|++|||.++.++++.++..+++..+..+.|+
T Consensus 115 ~~v~l~~~~~~~lG~~~~~~---~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~ 191 (206)
T 3r0h_A 115 FNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSME 191 (206)
T ss_dssp EEEEEECCTTCCCCEEEEEC---SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred EEEEEecCCCCccCeEEEcC---CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 445555544 5799999854 357999999999999999339999999999999999999999999999988899999
Q ss_pred EEECC
Q psy12579 110 VRYTP 114 (138)
Q Consensus 110 v~r~~ 114 (138)
|.|..
T Consensus 192 V~R~~ 196 (206)
T 3r0h_A 192 VTRPK 196 (206)
T ss_dssp EEEEC
T ss_pred EEeCC
Confidence 98864
No 163
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.34 E-value=2.8e-11 Score=80.88 Aligned_cols=82 Identities=29% Similarity=0.437 Sum_probs=69.7
Q ss_pred CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCe
Q psy12579 28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRS 105 (138)
Q Consensus 28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~ 105 (138)
++++.|.+.+.. ..|||.+... ..+++|..|.++|||+++ ||+.||.|++|||..+.++++.....+++.. +..
T Consensus 3 ~~~r~v~l~k~~~~~lG~~~~~~---~~g~~V~~v~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~ 78 (166)
T 1w9e_A 3 MDPREVILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASLV-GLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEK 78 (166)
T ss_dssp CCCEEEEEECCTTSCCSEEEEEE---TTEEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSE
T ss_pred CCCEEEEEEeCCCCcEeEEEEeC---CCCEEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCE
Confidence 578999999966 5799999874 357999999999999999 8999999999999999999886667777664 568
Q ss_pred EEEEEEEC
Q psy12579 106 VKLVVRYT 113 (138)
Q Consensus 106 v~l~v~r~ 113 (138)
+.+++++.
T Consensus 79 v~l~vr~~ 86 (166)
T 1w9e_A 79 ITMTIRDR 86 (166)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 99999554
No 164
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.32 E-value=3.6e-11 Score=70.78 Aligned_cols=67 Identities=27% Similarity=0.508 Sum_probs=59.3
Q ss_pred CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEEC
Q psy12579 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 113 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 113 (138)
..|||.+.. +++|..|.++++|+++ | |+.||.|++|||.++.++++.++..+++..+..+.+++.|+
T Consensus 13 ~~~g~~~~~------gv~V~~v~~~s~A~~a-G~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~ 80 (81)
T 2rcz_A 13 EEYGLRLAS------HIFVKEISQDSLAARD-GNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 80 (81)
T ss_dssp CCCCEEEEE------EEEEEEECTTSHHHHH-SSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred CCCCEEEeC------CEEEEEECCCChHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence 579998763 5899999999999999 7 99999999999999998899999999988777888988775
No 165
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=2.1e-11 Score=77.36 Aligned_cols=87 Identities=21% Similarity=0.345 Sum_probs=69.0
Q ss_pred CCcEEEEEec---C-CCCcCeEEeccC---CCCCCeEEEEEcC--CChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579 28 AHPRVVELPK---T-DEGLGFNVMGGK---EQNSPIYISRIIP--GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98 (138)
Q Consensus 28 ~~~~~v~l~~---~-~~~~G~~l~~~~---~~~~~v~V~~v~~--gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~ 98 (138)
..+++|++.. . .+.|||.+.... +...+++|..|.+ ++||+++ ||+.||+|++|||..+.++++.++..+
T Consensus 11 ~~~~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~a-GL~~GD~Il~Vng~~v~~~~~~dl~~~ 89 (118)
T 2yub_A 11 QLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRN-AIHPGDRILEINGTPVRTLRVEEVEDA 89 (118)
T ss_dssp CSCCEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHH-HCCTTCCEEEESSSBTTTSCHHHHHHH
T ss_pred cCCceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHc-CCCCCCEEEEECCEECCCcCHHHHHHH
Confidence 3456666655 2 235777766322 1246799999999 9999999 999999999999999999988999999
Q ss_pred HHhCCCeEEEEEEECCc
Q psy12579 99 LKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 99 l~~~~~~v~l~v~r~~~ 115 (138)
+...+..+.|+|.|++.
T Consensus 90 l~~~g~~v~l~v~R~g~ 106 (118)
T 2yub_A 90 IKQTSQTLQLLIEHDPV 106 (118)
T ss_dssp HHCCSSCEEEEEEECSS
T ss_pred HHhCCCEEEEEEEECCE
Confidence 88777789999998864
No 166
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.25 E-value=2.5e-11 Score=77.53 Aligned_cols=85 Identities=27% Similarity=0.532 Sum_probs=68.1
Q ss_pred CCcEEEEEecCC--CCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579 28 AHPRVVELPKTD--EGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA 102 (138)
Q Consensus 28 ~~~~~v~l~~~~--~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~ 102 (138)
...+.+.+.+.+ .+|||++...... ..+++|..|.+++||+++ | |+.||+|++|||..+. ++.++..+++..
T Consensus 18 ~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~a-G~l~~GD~I~~ing~~v~--~~~~~~~~l~~~ 94 (124)
T 1wh1_A 18 LELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKD-GRIREGDRIIQINGIEVQ--NREEAVALLTSE 94 (124)
T ss_dssp CEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHT-CCCCTTCEEEEESSCBCC--SHHHHHHHHTCS
T ss_pred ceEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECC--CHHHHHHHHHhC
Confidence 444456665544 4799999875421 357999999999999999 7 9999999999999996 478888888774
Q ss_pred -CCeEEEEEEECCc
Q psy12579 103 -QRSVKLVVRYTPK 115 (138)
Q Consensus 103 -~~~v~l~v~r~~~ 115 (138)
+..+.|+|.|+..
T Consensus 95 ~g~~v~l~v~R~g~ 108 (124)
T 1wh1_A 95 ENKNFSLLIARPEL 108 (124)
T ss_dssp SCCSCCEEEEECSS
T ss_pred CCCEEEEEEEECCE
Confidence 6789999999864
No 167
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.18 E-value=4e-11 Score=90.18 Aligned_cols=93 Identities=29% Similarity=0.392 Sum_probs=75.2
Q ss_pred cCCCCCcEEEEEecC-CCCcCeEEeccCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579 24 SEGHAHPRVVELPKT-DEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100 (138)
Q Consensus 24 ~~~~~~~~~v~l~~~-~~~~G~~l~~~~~--~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~ 100 (138)
.......+.|.+.+. +.+|||++.+... ...+++|..|.++|||+++|+|+.||+|++|||.++.++++.++..+++
T Consensus 199 ~~~~~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~ 278 (388)
T 3suz_A 199 FSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK 278 (388)
T ss_dssp TCCSSCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTT
T ss_pred hcccccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHH
Confidence 344456788999886 5789999987431 1235899999999999999449999999999999999999999999998
Q ss_pred hC--CCeEEEEEEECCch
Q psy12579 101 QA--QRSVKLVVRYTPKV 116 (138)
Q Consensus 101 ~~--~~~v~l~v~r~~~~ 116 (138)
.. +..+.|++.|.+..
T Consensus 279 ~~~~~~~v~l~v~r~~~~ 296 (388)
T 3suz_A 279 GLKNQTQVKLNIVSCPPV 296 (388)
T ss_dssp TCTTCSCEEEEEEECCSC
T ss_pred hccCCCcccccccccccc
Confidence 75 45699999988654
No 168
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.17 E-value=4.3e-10 Score=76.91 Aligned_cols=83 Identities=34% Similarity=0.542 Sum_probs=69.0
Q ss_pred EEEEEecC-CCCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 31 RVVELPKT-DEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 31 ~~v~l~~~-~~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
..+.+.+. ...|||++...... ..+++|..|.++++|+++ | |+.||.|++|||.++.++++.++..+++..+..+
T Consensus 109 ~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v 187 (196)
T 1p1d_A 109 FHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRT-GTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLV 187 (196)
T ss_dssp EEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHT-SCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCE
T ss_pred EEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEE
Confidence 44555533 35799999764321 357999999999999999 7 9999999999999999888999999998888899
Q ss_pred EEEEEECC
Q psy12579 107 KLVVRYTP 114 (138)
Q Consensus 107 ~l~v~r~~ 114 (138)
.|++.|+.
T Consensus 188 ~l~v~R~~ 195 (196)
T 1p1d_A 188 KLKIRKDE 195 (196)
T ss_dssp EEEEECCC
T ss_pred EEEEEeCC
Confidence 99998874
No 169
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.89 E-value=3e-08 Score=63.94 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=50.7
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
..+++|..|.++|||+ + ||+.||.|++|||..+.+ ..++..++.. .+..+.+++.|++.
T Consensus 56 ~~g~~V~~V~~~spA~-a-GL~~GD~I~~inG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~ 116 (134)
T 2l97_A 56 TSGVIVRSVQSNMPAN-G-HLEKYDVITKVDDKEIAS--STDLQSALYNHSIGDTIKITYYRNGK 116 (134)
T ss_dssp CSCEEEEECSTTSGGG-T-TSCSSCEEEEETTEECCC--HHHHHHHHHHSSTTCEEEEEEEETTE
T ss_pred CCCEEEEEECCCCchH-H-CCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 4679999999999999 8 999999999999999965 4677777766 47899999999864
No 170
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.85 E-value=2.6e-08 Score=62.24 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=51.5
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
..+++|..|.++|||+.+ ||+.||.|++|||..+.+ ..++..++.. +..+.+++.|++.
T Consensus 34 ~~gv~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~ 92 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRA-GLRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRE 92 (113)
T ss_dssp SSCEEEEEEBTTSHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEEEEETTE
T ss_pred CCCeEEEEeCCCChHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence 467999999999999999 999999999999999964 5777777776 6889999999864
No 171
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.80 E-value=6e-08 Score=59.39 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=50.9
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 116 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 116 (138)
..+++|..|.++|||+ + ||+.||.|++|||..+.+ ..++..++.. .+..+.+++.|++..
T Consensus 6 ~~Gv~V~~V~~~spA~-~-GL~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~~ 67 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAA-D-VLHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKINYKHGDKN 67 (100)
T ss_dssp CCCEEEEEECTTSGGG-G-TCCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred CCCEEEEEeCCCCchH-H-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 4579999999999999 6 999999999999999955 5777777775 468899999998643
No 172
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.79 E-value=1.8e-08 Score=69.58 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=51.9
Q ss_pred CeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCC-CEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12579 43 GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRG-DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114 (138)
Q Consensus 43 G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~g-D~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~ 114 (138)
|++...+.....|++|..|.++|||+++ ||+.| |+|++|||..+.++.......+....+..+.+++.|..
T Consensus 5 ~~~~~~~~~~~~G~~V~~V~~~SpA~~A-GL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~ 76 (209)
T 3rle_A 5 SQSVEIPGGGTEGYHVLRVQENSPGHRA-GLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSK 76 (209)
T ss_dssp ---CCCTTSSSEEEEEEEECTTSHHHHT-TCCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETT
T ss_pred hhhhhccCCCCCEEEEEEECCCCHHHHC-CCCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecC
Confidence 3444333333567999999999999999 99999 99999999999887544332222345788999998864
No 173
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.75 E-value=2.5e-07 Score=61.48 Aligned_cols=76 Identities=21% Similarity=0.351 Sum_probs=62.2
Q ss_pred CcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579 29 HPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 107 (138)
Q Consensus 29 ~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~ 107 (138)
+.+++.+.+. ...|||.+.. + +|..+.++++|+.+ ||+.||.|++||+.++.++.+..+...+...+..+.
T Consensus 88 ~~~~v~l~~~~~~~lG~~~~~------g-~v~~v~~~s~a~~a-Gl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~ 159 (166)
T 1w9e_A 88 FERTITMHKDSTGHVGFIFKN------G-KITSIVKDSSAARN-GLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVT 159 (166)
T ss_dssp TCEEEEEECCTTSCCSEEEET------T-EEEEECTTSHHHHT-TCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred CcEEEEEecCCCCcEeEEEeC------C-EEEEEccCCHHHHc-CCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEE
Confidence 4455666543 3568888872 3 89999999999999 899999999999999999999998888888888877
Q ss_pred EEEEE
Q psy12579 108 LVVRY 112 (138)
Q Consensus 108 l~v~r 112 (138)
+.+..
T Consensus 160 l~v~~ 164 (166)
T 1w9e_A 160 ITIMP 164 (166)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77653
No 174
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.74 E-value=6.6e-08 Score=60.28 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=50.4
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
..+++|..|.+++||+.+ ||+.||.|++|||..+.+ ..++...+. .+..+.+++.|++.
T Consensus 34 ~~gv~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~-~g~~v~l~v~R~g~ 92 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRG-GIQDGDIIVKVNGRPLVD--SSELQEAVL-TESPLLLEVRRGND 92 (112)
T ss_dssp CSSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHHH-HCSSEEEEEEETTE
T ss_pred CCCeEEEEECCCChHHHC-CCCCCCEEEEECCEECCC--HHHHHHHHh-CCCeEEEEEEECCE
Confidence 457999999999999999 999999999999999965 567776664 47789999998864
No 175
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.74 E-value=9.6e-08 Score=71.70 Aligned_cols=75 Identities=24% Similarity=0.457 Sum_probs=62.4
Q ss_pred CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK 115 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~ 115 (138)
.++|+.+........+++|..|.+++||+++ ||+.||.|++|||.++.++...++..+++. .+..+.|+|.|.+.
T Consensus 85 ~giG~~~~~~~~~~~~~~V~~v~~~spA~~a-Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 160 (388)
T 1fc6_A 85 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKA-GARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA 160 (388)
T ss_dssp BBCSEEEEECTTCSSCEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred EEEEEEEEEeecCCCcEEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence 4789988753111357999999999999999 999999999999999999888888888875 46789999998764
No 176
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.72 E-value=4.2e-08 Score=58.55 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=47.4
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
++.|..+.++++|+++ ||+.||.|++|||..+.+ ..++..++.. .+..+.+++.|++.
T Consensus 20 G~~V~~~~~~s~A~~a-Gl~~GD~I~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g~ 79 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESI-GLQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDGQ 79 (87)
T ss_dssp EEEEEECSCHHHHHHT-TCCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred EEEEEeCCCCCHHHHC-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 4677778888888999 999999999999999965 4666666654 46789999999864
No 177
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.71 E-value=9.1e-08 Score=58.08 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=47.7
Q ss_pred eEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-C-CeEEEEEEECC
Q psy12579 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-Q-RSVKLVVRYTP 114 (138)
Q Consensus 56 v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~-~~v~l~v~r~~ 114 (138)
.+|..|.++|||+.+ ||+.||+|++|||..+.+ +.++...+... + ..+.+++.|+.
T Consensus 4 p~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~d~~~~l~~~~~~~~v~l~v~R~g 61 (95)
T 3id1_A 4 PVVGEIAANSIAAEA-QIAPGTELKAVDGIETPD--WDAVRLQLVDKIGDESTTITVAPFG 61 (95)
T ss_dssp CBEEEECTTSHHHHT-TCCTTCEEEEETTEECSS--HHHHHHHHHHTTTCSEEEEEEECTT
T ss_pred CEEEeeCCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHHhcCCCcEEEEEEECC
Confidence 478899999999999 999999999999999965 57777777653 3 68999999986
No 178
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.71 E-value=5.2e-08 Score=59.04 Aligned_cols=60 Identities=17% Similarity=0.364 Sum_probs=50.7
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 116 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~ 116 (138)
..+++|..|.++|||+. +|+.||.|++|||.++.+ ..++..++... +..+.+++.|++..
T Consensus 4 ~~Gv~V~~V~~~spA~~--GL~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~ 65 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAG--RLEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRDRKQ 65 (94)
T ss_dssp CCCEECCCCCTTSTTBT--TBCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEETTEE
T ss_pred CCcEEEEEECCCChHHh--CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 45789999999999986 699999999999999965 57777777764 78999999998743
No 179
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.70 E-value=1.2e-08 Score=61.68 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=49.1
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12579 55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 116 (138)
Q Consensus 55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~ 116 (138)
|++|..|.++|||+. +|+.||.|++|||.++.+ ..++..++... +..+.|++.|++..
T Consensus 2 Gv~V~~V~~~spA~~--GL~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~ 61 (91)
T 2kjp_A 2 GIYASSVVENMPAKG--KIEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIEREEKE 61 (91)
T ss_dssp CSSCCCCCCSSCCSS--CCCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred ceEEEEECCCChHHH--cCCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence 578888999999987 699999999999999965 57778888764 78899999998643
No 180
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.68 E-value=7.6e-08 Score=57.70 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=48.7
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEECCc
Q psy12579 55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYTPK 115 (138)
Q Consensus 55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 115 (138)
+++|..|.++++|+.+ ||+.||.|++|||..+.+ ..++...+... +..+.+++.|++.
T Consensus 5 ~~~V~~v~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g~ 63 (91)
T 2zpm_A 5 EPVLENVQPNSAASXA-GLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGS 63 (91)
T ss_dssp -CBCSEECTTSHHHHT-TCCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETTE
T ss_pred CeEEEEECCCChHHhc-CCCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEEEEECCe
Confidence 3678899999999998 999999999999999965 57777777654 6789999998864
No 181
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.59 E-value=4.8e-07 Score=66.13 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=52.2
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
..+++|..|.+++||+++ ||+.||.|++|||..+.+ ..++..++.. .+..+.|++.|++.
T Consensus 243 ~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~ 304 (318)
T 1te0_A 243 LQGIVVNEVSPDGPAANA-GIQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK 304 (318)
T ss_dssp CCCEEEEEECTTSTTTTT-CCCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEEEESSSC
T ss_pred CCcEEEEEeCCCChHHHC-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 457999999999999999 999999999999999965 5777777775 47899999999864
No 182
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.58 E-value=7.6e-09 Score=77.76 Aligned_cols=66 Identities=29% Similarity=0.507 Sum_probs=0.0
Q ss_pred CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEEC
Q psy12579 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 113 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~ 113 (138)
.+|||.+.+ .+|..|.++|+|+++ ||++||+|++|||.++.+.++.++..+++..+..+.|++...
T Consensus 308 ~~lG~~i~~-------g~I~~V~~gs~A~~a-GL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~ 373 (388)
T 3suz_A 308 YQLGFSVQN-------GIICSLMRGGIAERG-GVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPA 373 (388)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CccceEEec-------CEEEEeecCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEec
Confidence 457777654 288999999999999 799999999999999999999999999999888888888643
No 183
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.57 E-value=3.1e-07 Score=56.65 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=45.6
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
++.|....++++|+++ ||+.||.|++|||.++.++ .++..++.. .+..+.+++.|++.
T Consensus 38 G~~V~~~~pas~A~~a-Gl~~GDvI~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~ 97 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESI-GLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQ 97 (105)
T ss_dssp EEEEEECSCTHHHHHH-TCCTTCEEEEETTEETTST--THHHHHHHHHTTCSEEEEEEEETTE
T ss_pred EEEEecCCCCCHHHHc-CCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCeEEEEEEECCE
Confidence 3567777777788999 9999999999999999776 444455543 46789999999864
No 184
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.56 E-value=8.1e-08 Score=72.49 Aligned_cols=72 Identities=24% Similarity=0.412 Sum_probs=55.2
Q ss_pred CCcCeEEeccCCCCC--CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579 40 EGLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~--~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
.||||.+........ .++|..|.++|||+++ ||+.||+|++|||..+.++. +..+++..+..+.|++.|+..
T Consensus 74 ~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~A-GL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~ 147 (403)
T 3k50_A 74 YGFDYTLYKVLDNDTAYNALISYVVPGSPAEEA-GLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV 147 (403)
T ss_dssp CSEEEEEEECTTCSSCEEEEEEEECTTSHHHHT-TCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred cceEEEEEEcCCCCcceeEEEEEeCCCChHHHc-CCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence 456666664332122 3789999999999999 99999999999999998874 445555567789999988754
No 185
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.56 E-value=7.3e-07 Score=65.28 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=56.3
Q ss_pred CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEE-CCc
Q psy12579 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRY-TPK 115 (138)
Q Consensus 41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r-~~~ 115 (138)
.+|+.+... +...+++|..|.+++||+++ ||+.||.|++|||..+.+ ..+...++.. .+..+.|++.| ++.
T Consensus 230 ~lGi~~~~~-~~~~g~~V~~v~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~~g~ 303 (324)
T 1y8t_A 230 SLGVQVTND-KDTLGAKIVEVVAGGAAANA-GVPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVALTFQDPSGG 303 (324)
T ss_dssp ECCEEEESC-SSSSSEEEEEECTTSTTTTT-TCCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred ccceEeeec-cCCCceEEEEECCCChHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCCC
Confidence 366666532 12457999999999999999 999999999999999965 4677777764 47889999999 654
No 186
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.52 E-value=5e-07 Score=66.86 Aligned_cols=61 Identities=23% Similarity=0.385 Sum_probs=52.9
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 116 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 116 (138)
..+++|..|.++|||+++ ||+.||.|++|||..+.+ ..+...++.. .+..+.|++.|++..
T Consensus 262 ~~G~~V~~V~~~spA~~a-GL~~GDvI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~ 324 (345)
T 3stj_A 262 QRGAFVSEVLPGSGSAKA-GVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGKP 324 (345)
T ss_dssp CSSEEEEEECTTSHHHHH-TCCTTCEECEETTEECSC--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred CceEEEEEeccCChHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 357899999999999999 999999999999999964 5777777765 578999999998753
No 187
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.50 E-value=6.9e-07 Score=68.05 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 116 (138)
.+++|..|.++++|+++ ||+.||.|++|||.++.+ ..++..+++..+..+.|+|.|+...
T Consensus 363 ~gv~V~~V~~~spA~~a-GL~~GD~I~~vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~~ 422 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQA-GLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNES 422 (436)
T ss_pred CCEEEEEeCCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCeEEEEEEECCEE
Confidence 47999999999999999 899999999999999954 6888899988777899999998653
No 188
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.48 E-value=4.4e-07 Score=71.64 Aligned_cols=69 Identities=12% Similarity=0.216 Sum_probs=55.9
Q ss_pred CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
..+|+.+... ..+++|..|.++|||+++ ||++||+|++|||..+.. .+...++.. .|..+.|+|.|++.
T Consensus 485 ~~lG~~~~~~---~~gv~V~~V~~~spA~~A-GL~~GD~I~aInG~~v~~---~~l~~~l~~~~~g~~v~l~v~R~g~ 555 (597)
T 4fgm_A 485 VNFGAKYKAS---PQGLDVLNVYHDESAYHA-GLSAGDKIIAIDHLQATE---QSVKRILERYIPGDTVTIHAFRRDE 555 (597)
T ss_dssp CCCSEEEEEE---TTEEEEEEECTTSHHHHH-TCCTTCEEEEETTEECCT---TTHHHHHTTCCTTCEEEEEEEETTE
T ss_pred cccceEEecc---CCeEEEEEeCCCChHHHC-CCCCCCEEEEECCEECCH---HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 3688888653 346999999999999999 999999999999999943 344555554 57899999999864
No 189
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.44 E-value=9.9e-07 Score=64.70 Aligned_cols=58 Identities=24% Similarity=0.428 Sum_probs=51.0
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
.+++|..|.+++||+++ ||+.||.|++|||..+.+ ..+...+++. +..+.|++.|++.
T Consensus 256 ~gv~V~~V~~~spA~~a-Gl~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~v~R~g~ 313 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRA-GLRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRE 313 (325)
T ss_dssp SCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEEEEETTE
T ss_pred CCeEEEEeCcCChHHHC-CCCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence 57999999999999999 999999999999999955 5777777765 6789999999864
No 190
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.43 E-value=1.2e-06 Score=55.83 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=48.6
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
..+++|..|.+++||+.+ |+.||.|++|||..+.+ ..++...+.. .+..+.+++ |++.
T Consensus 24 ~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~--~~dl~~~l~~~~~g~~v~l~V-R~g~ 83 (125)
T 2hga_A 24 PDGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITT-DQGT 83 (125)
T ss_dssp CCCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred CCceEEEEECCCChHHHh--cCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence 457999999999999987 99999999999999965 5677777764 477899999 7654
No 191
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.41 E-value=8.9e-07 Score=67.44 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=50.4
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
..+++|..|.++|||+++ ||+.||+|++|||..+.++ .+....+.. .+..+.|++.|++.
T Consensus 262 ~~G~~V~~V~~~spA~~a-GL~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~ 323 (436)
T 4a8c_A 262 QRGAFVSEVLPGSGSAKA-GVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGK 323 (436)
T ss_pred CcceEEEEECCCChHHHC-CCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 357999999999999999 9999999999999999765 555555554 47889999998864
No 192
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.36 E-value=1.1e-06 Score=67.32 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
.+++|..|.++|+|+++ ||+.||.|++||+.++.+ ..++..+++..+..+.|+|.|+..
T Consensus 386 ~Gv~V~~V~~gspA~~a-GL~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~ 444 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRA-GIRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQVLRGPG 444 (451)
T ss_dssp EEEEEEEECTTSHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEEEEETTE
T ss_pred CceEEEEECCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEEEEECCE
Confidence 36899999999999999 899999999999999955 588888888878889999999864
No 193
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.36 E-value=1.2e-06 Score=60.41 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=54.4
Q ss_pred CcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCC-CCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECC
Q psy12579 41 GLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKR-GDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTP 114 (138)
Q Consensus 41 ~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~-gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~ 114 (138)
.+|+++..... ...+++|..|.++|||+++ ||+. ||.|++||+. +.++ .++..+++. .+..+.|++.|..
T Consensus 96 ~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~a-Gl~~~GD~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l~v~r~~ 170 (209)
T 3rle_A 96 LLGVSIRFCSFDGANENVWHVLEVESNSPAALA-GLRPHSDYIIGADTV-MNES--EDLFSLIETHEAKPLKLYVYNTD 170 (209)
T ss_dssp SSCEEEEEEECTTGGGSCEEEEEECTTSHHHHH-TCCTTTEEEEEESSC-CCSS--SCHHHHHHHTTTSCEEEEEEETT
T ss_pred ccceEEeecChhHccccceEEEEeCCCChHHHC-CCCCCCCEEEECCCE-eCCH--HHHHHHHHhCCCCeEEEEEEECC
Confidence 58888863211 1257999999999999999 9999 9999999997 6443 556666666 4778999998864
No 194
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.34 E-value=1e-06 Score=67.42 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=51.2
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
.+++|..|.++|||+++ ||+.||+|++|||..+.+ ..+....+.. .+..+.|+|.|++.
T Consensus 282 ~G~~V~~V~~~spA~~a-GL~~GDvI~~vnG~~v~~--~~~l~~~l~~~~~g~~v~l~V~R~g~ 342 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELA-GLKAGDIITQINDTKITQ--ATQVKTTISLLRVGSTVKIIVERDNK 342 (451)
T ss_dssp CCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred ceEEEEecCCCChHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 67999999999999999 999999999999999965 4666666664 47899999999865
No 195
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.33 E-value=2.1e-06 Score=63.56 Aligned_cols=60 Identities=28% Similarity=0.380 Sum_probs=51.9
Q ss_pred CCeEEEEEcCCChhhhcCCCCC-----------CCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579 54 SPIYISRIIPGGVADRHGGLKR-----------GDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV 116 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~-----------gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~ 116 (138)
.|++|..|.+++||+++ ||+. ||+|++|||..+.++ .+...++.. .++.+.|++.|++..
T Consensus 251 ~Gv~V~~V~~~spA~~A-Gl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~ 323 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKA-GLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHK 323 (348)
T ss_dssp SSEEEEECCSSSHHHHH-TCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSE
T ss_pred ceEEEEEecCCChHHHc-CCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEE
Confidence 57999999999999999 9999 999999999999765 677777754 478999999998753
No 196
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.13 E-value=3.2e-07 Score=67.47 Aligned_cols=60 Identities=32% Similarity=0.499 Sum_probs=0.0
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 116 (138)
..+++|..|.++|||+++ ||+.||.|++|||..+.+ ..++..+++. +..+.|++.|++..
T Consensus 253 ~~g~~V~~v~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~~ 312 (332)
T 3num_A 253 ISGAYIIEVIPDTPAEAG-GLKENDVIISINGQSVVS--ANDVSDVIKR-ESTLNMVVRRGNED 312 (332)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCceEEEEeccCCChHHc-CCCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCEE
Confidence 357899999999999999 999999999999999955 4566666654 67899999998654
No 197
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.96 E-value=1.1e-06 Score=67.27 Aligned_cols=60 Identities=18% Similarity=0.333 Sum_probs=0.0
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 115 (138)
..+++|..|.++++|+++ ||+.||.|++||+..+.+ +.++..+++.....+.|+|.|+..
T Consensus 382 ~~gv~V~~V~~gspA~~a-GL~~GDiI~~vng~~v~~--~~~l~~~l~~~~~~v~l~v~R~g~ 441 (448)
T 1ky9_A 382 DQGVVVNNVKTGTPAAQI-GLKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGDS 441 (448)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCeEEEEEecCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHcCCCeEEEEEEECCE
Confidence 356899999999999999 999999999999999964 567777777665688888888764
No 198
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.90 E-value=4.1e-05 Score=63.47 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=55.4
Q ss_pred CCcCeEEeccCCCCCCeEEEEEcCC--------ChhhhcCC--CCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEE
Q psy12579 40 EGLGFNVMGGKEQNSPIYISRIIPG--------GVADRHGG--LKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKL 108 (138)
Q Consensus 40 ~~~G~~l~~~~~~~~~v~V~~v~~g--------s~a~~~~g--l~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l 108 (138)
.++|+.+... +.+++|..+.++ +||+++ | |+ ||+|++|||.++.++. ++..+++. .+..+.|
T Consensus 737 ~g~G~~~~~~---~~~~~v~~v~~~~~~~~~~~spa~~a-g~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l 809 (1045)
T 1k32_A 737 GRIACDFKLD---GDHYVVAKAYAGDYSNEGEKSPIFEY-GIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARI 809 (1045)
T ss_dssp CBCSEEEEEE---TTEEEEEEECBSCTTSTTCBCGGGGG-TCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEE
T ss_pred ceecEEEEEe---CCEEEEEEecCCCcccccCCChHHHC-CCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEE
Confidence 4788888652 356899999988 999999 7 99 9999999999998774 55666665 4778999
Q ss_pred EEEECC
Q psy12579 109 VVRYTP 114 (138)
Q Consensus 109 ~v~r~~ 114 (138)
+|.|++
T Consensus 810 ~v~r~~ 815 (1045)
T 1k32_A 810 RLSGKG 815 (1045)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 998865
No 199
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.89 E-value=6.7e-06 Score=62.82 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=50.4
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK 115 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~ 115 (138)
.+++|..|.+++||+++ ||+.||.|++|||..+.++ .+...++.. .+..+.|++.|++.
T Consensus 286 ~G~~V~~V~~gspA~~A-GL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~ 346 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKA-GIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK 346 (448)
T ss_dssp CSEECCCCTTCSSSTTT-TCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred CceEEEEeccCCHHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 47899999999999998 9999999999999999776 566666654 47889999988764
No 200
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.60 E-value=0.0001 Score=57.54 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=47.5
Q ss_pred CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCH--------HHHHHHHH--hCCCeEEEEEEECCch
Q psy12579 53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH--------GKAVELLK--QAQRSVKLVVRYTPKV 116 (138)
Q Consensus 53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~--------~~~~~~l~--~~~~~v~l~v~r~~~~ 116 (138)
..|++|..|.++|||++ +|+.||.|+++||..+.+... .....++. ..|+.+.|+|.|++..
T Consensus 276 ~~Gv~V~~V~~~spA~~--al~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~ 347 (539)
T 4fln_A 276 NEGVLVRRVEPTSDASK--VLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEH 347 (539)
T ss_dssp SBCEEEEEECTTSGGGG--TCCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEE
T ss_pred cCceeeecccCCChHHh--CccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence 45899999999999985 499999999999999965321 11233343 3589999999998754
No 201
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=96.70 E-value=0.0069 Score=47.29 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=45.7
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EEEEE
Q psy12579 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VKLVV 110 (138)
Q Consensus 54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~-v~l~v 110 (138)
.+++|..|.+++++... ++..||.|++|||.++.+ ..+..++++.+.+. +.+.+
T Consensus 415 ~gVvvs~V~~~s~a~~~-g~~~gdiI~~vNg~~V~s--~~~l~~~l~~~k~~~l~~~~ 469 (539)
T 4fln_A 415 QIVILSQVLANEVNIGY-EDMNNQQVLKFNGIPIRN--IHHLAHLIDMCKDKYLVFEF 469 (539)
T ss_dssp CCEEEEEECCCGGGTTC-SSCCSEEEEEETTEECCS--HHHHHHHHHTCCSSEEEEEE
T ss_pred eEEEEEEecCCchhhhc-CCCCCCEEEeECCEEcCC--HHHHHHHHHHcCCCeEEEEE
Confidence 46999999999999998 999999999999999955 58889999887544 45444
No 202
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=55.44 E-value=23 Score=28.01 Aligned_cols=40 Identities=28% Similarity=0.481 Sum_probs=26.1
Q ss_pred CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeC
Q psy12579 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87 (138)
Q Consensus 41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v 87 (138)
.+||.+.-.. +..++|..+.... + ++..||.|++|||.++
T Consensus 85 ~~Pf~vki~i--DG~i~V~dv~~~~----s-~I~vGdEIlsING~pv 124 (583)
T 3dor_A 85 YLPYTVQKSS--DGRFYFVDIMTFS----S-EIRVGDELLEVDGAPV 124 (583)
T ss_dssp ECSEEEEECT--TSCEEEEEECSSC----C-SSCTTCEEEEETTEEH
T ss_pred cCCeEEEEEE--CCcEEEEeccccc----c-CCCCCCEEEEECCccH
Confidence 3566555122 3347776653321 2 6999999999999987
No 203
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=23.20 E-value=99 Score=16.72 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=25.2
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLL 80 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~ 80 (138)
+|.......+|||..... ....+|++.-.=... ... .|..||.+.
T Consensus 9 ~Vk~fn~~kGfGFI~~~~--g~~dvFvH~s~i~~~-g~~-~l~~G~~V~ 53 (71)
T 3i2z_B 9 NVKWFNESKGFGFITPED--GSKDVFVHFSAIQTN-GFK-TLAEGQRVE 53 (71)
T ss_dssp EEEEEETTTTEEEEEETT--CCCCEEEEGGGBCCS-SCC-CCCTTCEEE
T ss_pred EEEEEECCCCcEEEecCC--CCccEEEEhHHcccc-cCc-CCCCCCEEE
Confidence 456666778999976542 123577764211110 011 578888765
No 204
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=21.56 E-value=1.6e+02 Score=20.10 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=31.4
Q ss_pred CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106 (138)
Q Consensus 71 ~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v 106 (138)
+.+..|+.++-|++.-..+.+...+.++++..|..+
T Consensus 132 g~~~~Gk~VLIVDDvitTG~Tl~~a~~~L~~~Ga~v 167 (234)
T 3m3h_A 132 GKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEV 167 (234)
T ss_dssp SCCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEE
T ss_pred cccCCCCEEEEEecccchhHHHHHHHHHHHHCCCEE
Confidence 356789999999999999999999999999987654
No 205
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=20.94 E-value=1.1e+02 Score=16.35 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=26.5
Q ss_pred EEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEE
Q psy12579 32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81 (138)
Q Consensus 32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ 81 (138)
+|.......+|||..... ....+|++.-.-.... .. .|..||.+.-
T Consensus 5 ~Vk~fn~~kGfGFI~~~~--gg~dvFvH~s~i~~~g-~~-~l~~G~~V~f 50 (67)
T 3cam_A 5 IVKWFNDAKGFGFITPDE--GGEDLFAHFSAINMEG-FK-TLKEGQRVSF 50 (67)
T ss_dssp EEEEEETTTTEEEEEETT--SCCCEEEEGGGBCGGG-GS-SCCTTCEEEE
T ss_pred EEEEEECCCCeEEEecCC--CCccEEEEHHHccccC-CC-CCCCCCEEEE
Confidence 355666778999977642 1334777643221111 12 6888888764
Done!