RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12579
(138 letters)
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 125 bits (317), Expect = 6e-39
Identities = 75/85 (88%), Positives = 77/85 (90%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
VVELPKTDEGLGFN+MGGKEQNSPIYISR+IPGGVADRHGGLKRGDQLLSVNGVSVEG
Sbjct: 6 SGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 65
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTP 114
E H KAVELLK AQ SVKLVVR P
Sbjct: 66 EQHEKAVELLKAAQGSVKLVVRSGP 90
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 122 bits (309), Expect = 1e-37
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR + + + GLGFN++GG E I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 12 PRRIVIHRGSTGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 70
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
H +A LK A ++V ++ +Y P+ E +
Sbjct: 71 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 119 bits (300), Expect = 2e-36
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 26 GHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
G R V + K D GLG ++ GG+E PI IS+I G AD+ L GD +LSVNG
Sbjct: 1 GSLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVVRY 112
+ H +AV+ LK+ + V L V+Y
Sbjct: 61 EDLSSATHDEAVQALKKTGKEVVLEVKY 88
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 118 bits (298), Expect = 5e-36
Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 24 SEGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
S+G R V L K D EGLG ++ GGKE PI IS I PG ADR GGL GD +L+V
Sbjct: 4 SQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAV 63
Query: 83 NGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
NGV++ H +AV +L Q + ++ V Y
Sbjct: 64 NGVNLRDTKHKEAVTILSQQRGEIEFEVVYVA 95
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 118 bits (298), Expect = 6e-36
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
VEL + +G GF++ GG+E N +Y+ R+ G A+R G ++ GD++L +NG + +
Sbjct: 24 DFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTK 83
Query: 89 GEDHGKAVELLKQAQRSVKLVVR 111
H +A+EL+K R V+L ++
Sbjct: 84 NMKHSRAIELIKNGGRRVRLFLK 106
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 118 bits (298), Expect = 7e-36
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR + + + GLGFN++GG++ I+IS I+ GG AD G L++GDQ+LSVNGV +
Sbjct: 15 PRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
H +A LK A ++V ++ +Y P+ E
Sbjct: 74 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 105
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 117 bits (296), Expect = 9e-36
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
VEL + LG + G +E PI IS + GG+A+R G + GD++L++N S++G+
Sbjct: 7 YTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGK 66
Query: 91 DHGKAVELLKQAQRSVKLVVRYTPKVLEE 119
+A+ LL+ A +V L ++
Sbjct: 67 PLSEAIHLLQMAGETVTLKIKKQTDAQPA 95
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 118 bits (297), Expect = 1e-35
Identities = 40/92 (43%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR + L K GLGFN++GG++ I++S I+ GG AD G L+RGD++LSVNGV++
Sbjct: 16 PRKIILHKGSTGLGFNIVGGED-GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
H +A LK+A +SV +V +Y P+ E
Sbjct: 75 ATHEQAAAALKRAGQSVTIVAQYRPEEYSRFE 106
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 116 bits (292), Expect = 4e-35
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 19 AAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQ 78
+ +S V++ K +G GF++ GG+E +Y+ R+ G A R+G ++ GDQ
Sbjct: 1 GSSGSSGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQ 60
Query: 79 LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
++ +NG S H +A+EL+K R V+L+++
Sbjct: 61 IIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTG 97
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 115 bits (291), Expect = 7e-35
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 23 ASEGHAHPRVVELPKTDEGLGFNVMGGK------EQNSPIYISRIIPGGVADRHGGLKRG 76
S G + V L +++ GLGF++ GGK ++ I++SRI GG A R G L+ G
Sbjct: 1 GSSGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVG 60
Query: 77 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
D++LS+NGV V H AV LL A ++ L++
Sbjct: 61 DRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 113 bits (286), Expect = 3e-34
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
+ + L + + G GF ++GG E PIYI I+P G AD G L+ GD+L+SV+G V G+
Sbjct: 4 QDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGK 63
Query: 91 DHGKAVELLKQA--QRSVKLVVRYTP 114
H V+L++QA Q V L VR T
Sbjct: 64 SHQLVVQLMQQAAKQGHVNLTVRQTR 89
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 116 bits (293), Expect = 5e-34
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 23 ASEGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
VVEL K + LG V GG +++ +S + GG+A R L GD + +
Sbjct: 1 GPGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKA 60
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQ 127
VNG+++ H + + LLK V L V Y + +
Sbjct: 61 VNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFR 106
Score = 112 bits (283), Expect = 1e-32
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 27 HAHPRVVELPKTDEGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
V L K GF + GG ++ P+ I+ + PGG ADR G +K GD+LLSV
Sbjct: 104 MFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSV 163
Query: 83 NGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
+G+ + G H +A+ +LKQ + L++ Y V++
Sbjct: 164 DGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMD 199
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 113 bits (285), Expect = 6e-34
Identities = 37/82 (45%), Positives = 51/82 (62%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
+V+ L + EGLG ++ GGKE PI IS I PG ADR GGL GD +L+VNGV++
Sbjct: 30 KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 89
Query: 91 DHGKAVELLKQAQRSVKLVVRY 112
H +AV +L Q + ++ V Y
Sbjct: 90 KHKEAVTILSQQRGEIEFEVVY 111
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 112 bits (283), Expect = 8e-34
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 32 VVELPKTDEGLGFNVMGG----KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
V L K GF + GG + ++ P+ I+ + PGG ADR G +K GD+LLSV+G+ +
Sbjct: 6 EVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRL 65
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRYTP 114
G H +A+ +LKQ + L++ Y
Sbjct: 66 LGTTHAEAMSILKQCGQEAALLIEYDV 92
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 113 bits (284), Expect = 1e-33
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
H VEL GLGF ++GGK S + + I+PGG+ADR G L+ GD +L + G +V
Sbjct: 14 GHVEEVELINDGSGLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNV 71
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRYTPK 115
+G + ++L+ SV+++V P
Sbjct: 72 QGMTSEQVAQVLRNCGNSVRMLVARDPA 99
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 112 bits (283), Expect = 1e-33
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 19 AAFAASEGHAHPRVVELPKTDEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRG 76
+ +S + VEL + G G + GG++ ++P+ + ++ G A R G L+ G
Sbjct: 1 GSSGSSGQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVG 60
Query: 77 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
D +L +NG S +G H +AVE ++ + LV+R
Sbjct: 61 DLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLS 99
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 112 bits (281), Expect = 2e-33
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ L + + GLGF++ GG + + I+I++IIPGG A G L D +L VN V V
Sbjct: 8 IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEM 122
H +AVE LK+A V+LVVR EE +
Sbjct: 68 SEVVHSRAVEALKEAGPVVRLVVRRRQPPPEETSV 102
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 111 bits (280), Expect = 3e-33
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 29 HPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+E+ K GLG +++GG + I I + G A + G L GDQ+L VNG+ +
Sbjct: 4 CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEM 122
H +A+ +L+Q + V+L + + +
Sbjct: 64 RKATHDEAINVLRQTPQRVRLTLYRDEAPYKSTRL 98
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 111 bits (279), Expect = 3e-33
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 31 RVVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
VEL K D LG +V GG ++ IY+ +IP G A+ G + +GD++L+VNGVS+
Sbjct: 7 FEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSL 66
Query: 88 EGEDHGKAVELLKQAQRSVKLVVR 111
EG H +AVE L+ + V L++
Sbjct: 67 EGATHKQAVETLRNTGQVVHLLLE 90
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 111 bits (279), Expect = 4e-33
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
+ L + GLGFN++GG +Q +S IY+SRI G A G L+ GD++LSVNG
Sbjct: 8 EEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
++ H AV+L + A +V L V++ +
Sbjct: 68 QDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 111 bits (279), Expect = 4e-33
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
V L + + G GF ++GG E PI I +I G ADR G L GD+L+ V+G+ V G+
Sbjct: 11 LDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGK 70
Query: 91 DHGKAVELLKQAQRS--VKLVVR 111
H ++L+ A R+ V L VR
Sbjct: 71 THRYVIDLMHHAARNGQVNLTVR 93
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 111 bits (279), Expect = 6e-33
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 30 PRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
P V L K +G ++ GG + +YI ++ A G + GD++ VNG S++
Sbjct: 20 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 79
Query: 89 GEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDK 126
G+ + +++++ + V + +++E+ F+
Sbjct: 80 GKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNG 117
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 110 bits (278), Expect = 9e-33
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNS-PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
++EL K GLG ++ G K+++ I++ I P G A G ++ GD+LL +N + G
Sbjct: 27 HIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYG 86
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
H A ++K A VKLV + +M
Sbjct: 87 RSHQNASAIIKTAPSKVKLVFIRNEDAVNQMA 118
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 110 bits (277), Expect = 9e-33
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR V++ K E LG +++ G++ IY+S++ G +A + GL+ GDQLL NG+++
Sbjct: 20 PRHVKVQKGSEPLGISIVSGEK--GGIYVSKVTVGSIAHQ-AGLEYGDQLLEFNGINLRS 76
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEM 122
+A ++ Q ++ ++ +Y P V +
Sbjct: 77 ATEQQARLIIGQQCDTITILAQYNPHVHQLSSH 109
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 110 bits (277), Expect = 1e-32
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 28 AHPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
++E+ K GLG +++GGK+ + I I + G A R G L GDQ+L VNGV
Sbjct: 16 GQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD 75
Query: 87 VEGEDHGKAVELLKQAQRSVKLVVR 111
+ H +A+ L+Q + V+LVV
Sbjct: 76 LRNSSHEEAITALRQTPQKVRLVVY 100
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 110 bits (277), Expect = 1e-32
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 27 HAHPRVVELPKTD-EGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRG 76
PR+VE+ + LG +++GG+ E+ I+I +++ A + LK G
Sbjct: 13 WGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTG 72
Query: 77 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
D++L V+GV ++ H +AVE +K A V +V+
Sbjct: 73 DKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 109 bits (274), Expect = 1e-32
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 33 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
+L K+ G GF V+GG E + + I ++ G A G ++ GD ++SVN V G H
Sbjct: 4 TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63
Query: 93 GKAVELLKQA--QRSVKLVVR 111
+ V++ + SV L +
Sbjct: 64 AQVVKIFQSIPIGASVDLELC 84
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 109 bits (274), Expect = 2e-32
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 26 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
G +++ L K E LG + EQ I ++RI+ GG ADR G + GD+L VNG+
Sbjct: 1 GSDSVKIIRLVKNREPLGATIKKD-EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGI 59
Query: 86 SVEGEDHGKAVELLKQAQRSVKLVV 110
VE + + +++L Q+Q ++ +
Sbjct: 60 PVEDKRPEEIIQILAQSQGAITFKI 84
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 109 bits (275), Expect = 2e-32
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 30 PRVVELPKTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
+ + L + +GLGF+++GG + PIY+ + G A G LKRGDQ+++VNG S
Sbjct: 26 CKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 85
Query: 87 VEGEDHGKAVELLKQAQRSVKLVVRYTP 114
+EG H +AV +LK+ + +V L+V +
Sbjct: 86 LEGVTHEEAVAILKRTKGTVTLMVLSSD 113
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 109 bits (275), Expect = 2e-32
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 29 HPRVVELPK-TDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
R VE+ K + LG ++ GG + PI+I+ + P GVA + L+ GD+++++ G
Sbjct: 24 GLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICG 83
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
S EG H +AV LLK A S+++ V V E
Sbjct: 84 TSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSE 117
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 109 bits (275), Expect = 2e-32
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 22 AASEGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRG 76
+ + L + GLGFN++GG +Q +S IY+SRI G A G L+ G
Sbjct: 10 GRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEG 69
Query: 77 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
D++LSVNG ++ H AV+L + A +V L V++ +V
Sbjct: 70 DKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQV 109
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 109 bits (274), Expect = 2e-32
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 22 AASEGHAHPRVVEL--PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQL 79
+S R+V L K EGLGF++ GG E IY+S + PG +A++ GL+ GDQ+
Sbjct: 1 GSSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEK-EGLRVGDQI 59
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
L VN S+ H +AV+ LK +++ V V
Sbjct: 60 LRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGR 94
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 108 bits (273), Expect = 3e-32
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 20 AFAASEGHAHPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQ 78
+ S G V + K+ G LGF+V GG E I++S++ G A+R GL GD+
Sbjct: 1 GSSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAER-AGLCVGDK 59
Query: 79 LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
+ VNG+S+E G AV++L + R + ++VR
Sbjct: 60 ITEVNGLSLESTTMGSAVKVLTSSSR-LHMMVRRMGSG 96
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 108 bits (273), Expect = 3e-32
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
+ + + GLG ++ GGK + I+ISR+ G A R G++ GD+LL VN
Sbjct: 4 ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDKLLEVN 62
Query: 84 GVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
GV+++G +H +AVE L+ A +V++ V +
Sbjct: 63 GVALQGAEHHEAVEALRGAGTAVQMRVWRERET 95
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 108 bits (273), Expect = 3e-32
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 28 AHPRVVELPKTD-EGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGD 77
PR VEL + + LG +++GG+ E I+I ++ A ++G LK GD
Sbjct: 3 MQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGD 62
Query: 78 QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
+++ V+G+ + H +AVE +++A V +V+
Sbjct: 63 RIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 97
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 109 bits (274), Expect = 3e-32
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 14 AKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKE-QNSPIYISRIIPGGVADRHGG 72
++ F+ + + K + L + GG + + +S + GG A+RHGG
Sbjct: 2 SEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGG 61
Query: 73 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS----VKLVVRYTPKVLEEMEMRF 124
+ +GD+++++NG V +A L++A + LVV P + E+ F
Sbjct: 62 VVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELTF 117
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 109 bits (274), Expect = 4e-32
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 23 ASEGHAHPRVVELPKTD-EGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLL 80
+ P +VE+ KT LG ++ +N S I I RI P V DR G L GD +L
Sbjct: 9 TVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHIL 68
Query: 81 SVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
S++G S+E +A +LL V+L + P+
Sbjct: 69 SIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQ 103
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 109 bits (273), Expect = 4e-32
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 29 HPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
P V L K +G ++ GG + +YI ++ A G + GD++ VNG S+
Sbjct: 24 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 83
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRY 112
+G+ + +++++ + V +
Sbjct: 84 KGKTKVEVAKMIQEVKGEVTIHYNK 108
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 109 bits (273), Expect = 5e-32
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 26 GHAHPRVVELPKTDEGLGFNVMGGK------EQNSPIYISRIIPGGVADRHGGLKRGDQL 79
GH VEL K EGLG +++G + I++ + GG A R G ++ D L
Sbjct: 1 GHMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVV-RYTPKVLEEMEMRFDKQR 128
+ V+G S+ G A +L+ + V+ ++ R P E+ +
Sbjct: 61 VEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTL 110
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 108 bits (272), Expect = 6e-32
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
++L K EGLGF++ ++PIY+ I+P G A + G LK GD+L+ VNGV + G
Sbjct: 15 IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74
Query: 90 EDHGKAVELLKQAQRS--VKLVVRYTPKVLEEMEM 122
+ + V LL+ + V L+V + EM
Sbjct: 75 KSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHPREM 109
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 107 bits (270), Expect = 7e-32
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 33 VELPKTDEGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
VEL K +GLG + G + S I++ I + G ++ GDQ+++V+G +++
Sbjct: 8 VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
Query: 89 GEDHGKAVELLKQAQRSVKLVVRYTP 114
G + +AVE+L+ ++V L +
Sbjct: 68 GFTNQQAVEVLRHTGQTVLLTLMRRG 93
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 107 bits (270), Expect = 9e-32
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 23 ASEGHAHPRVVELPKTDEGLGFNVMGGK--------EQNSPIYISRIIPGGVADRHGGLK 74
+S + L + LGFN++GG+ + I++S+I+ G A + GGL+
Sbjct: 2 SSGSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ 61
Query: 75 RGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
D+++ VNG + H +AVE K A+ + + V
Sbjct: 62 IHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 107 bits (270), Expect = 1e-31
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 32 VVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
VEL + GLG ++ G +YI ++PG A G L GD++L VNG S+
Sbjct: 11 TVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLL 70
Query: 89 GEDHGKAVELLKQAQRSVKLVVRYTP 114
G + +AV+L++ + ++ +V +
Sbjct: 71 GLGYLRAVDLIRHGGKKMRFLVAKSD 96
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 108 bits (271), Expect = 1e-31
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
++L K +GLGF++ GG ++ IY+++II GG A + G L+ GD+LL VN S+
Sbjct: 28 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87
Query: 88 EGEDHGKAVELLKQAQRSVKLVVR 111
E H +AV +LK V L V
Sbjct: 88 EEVTHEEAVAILKNTSEVVYLKVG 111
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 107 bits (269), Expect = 1e-31
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
V L K +GLGF++ GG ++ IYI++II GG A + G L+ GD+LL+VN ++
Sbjct: 7 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
Query: 88 EGEDHGKAVELLKQAQRSVKLVVR 111
+ H +AV LK V L V
Sbjct: 67 QDVRHEEAVASLKNTSDMVYLKVA 90
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 107 bits (269), Expect = 2e-31
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 22 AASEGHAHPRVVELPKTD-EGLGFNVMGGK-------EQNSPIYISRIIPGGVADRHGGL 73
+ S G V + + + EG GF ++ P I RII G ADR L
Sbjct: 3 SGSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKL 62
Query: 74 KRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
K GD++L+VNG S+ H V+L+K A SV L + ++
Sbjct: 63 KVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEEL 105
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 107 bits (269), Expect = 3e-31
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 5 SPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGK---EQNSPIYISRI 61
S D ASA+A + V+ + +E V L K GLGF++ GGK + P+ I+RI
Sbjct: 7 STDSAASASAASDVSVESTAEAT--VCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRI 64
Query: 62 IPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVR 111
G +++ ++ GD++L + G +++G +A ++K V +V+R
Sbjct: 65 FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR 115
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 109 bits (273), Expect = 3e-31
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 26 GHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLL 80
G + L + + GLGF++ GG + + I+I++IIPGG A + G L+ D +L
Sbjct: 2 GSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 61
Query: 81 SVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
VN V V H AVE LK+A V+L V E++
Sbjct: 62 FVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEI 104
Score = 97.9 bits (244), Expect = 9e-27
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 27 HAHPRVVELPKTDEGLGFNVMGGKEQNS-----PIYISRIIPGGVADRHGGLKRGDQLLS 81
++L K +GLGF++ GG IY+++II GG A + G L+ GD++L+
Sbjct: 98 AEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILA 157
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
VN V +E H AV LK V L V
Sbjct: 158 VNSVGLEDVMHEDAVAALKNTYDVVYLKVA 187
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 106 bits (267), Expect = 3e-31
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 24 SEGHAHPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQL 79
H P ++ + K G+G +++ K + IY+ ++ GG AD G L GDQL
Sbjct: 4 GSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQL 63
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEE 119
LSV+G S+ G +A EL+ + V L V + E
Sbjct: 64 LSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRRE 103
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 106 bits (266), Expect = 4e-31
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
++L K +GLGF++ GG ++ IY+++II GG A + G L+ GD+LL+VN V
Sbjct: 5 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 86 SVEGEDHGKAVELLKQAQRSVKLVVR 111
S+E H +AV LK V L V
Sbjct: 65 SLEEVTHEEAVTALKNTSDFVYLKVA 90
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 106 bits (266), Expect = 5e-31
Identities = 28/94 (29%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 32 VVELPKTDEGLGFNVMGGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
+ + GLGF++ GG + +N I + R+ P G+A + G +++G+++LS+NG S++G
Sbjct: 19 TILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGT 78
Query: 91 DHGKAVELLKQAQRSVKLVV---RYTPKVLEEME 121
H A+ +L+QA+ + V+ + TP+ + ++
Sbjct: 79 THHDALAILRQAREPRQAVIVTRKLTPEAMPDLN 112
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 106 bits (266), Expect = 5e-31
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 29 HPRVVELPKTD-EGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQ 78
PR VEL + + LG +++GG+ E I+I ++ A ++G LK GD+
Sbjct: 24 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 83
Query: 79 LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
++ V+G+ + H +AVE +++A V +V+
Sbjct: 84 IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 106 bits (266), Expect = 6e-31
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 29 HPRVVELPKTD-EGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
H +VV + K E LG V GG E + PIY+ + PGGV R G +K GD LL+V+G
Sbjct: 24 HEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDG 83
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
V + +AV LLK+ S+ L
Sbjct: 84 VELTEVSRSEAVALLKRTSSSIVLKALEVK 113
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 105 bits (265), Expect = 8e-31
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 23 ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
AS+ L K++ G GF ++GG E + + + +IP G A + G ++ GD ++ +
Sbjct: 13 ASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYI 72
Query: 83 NGVSVEGEDHGKAVELLKQAQ--RSVKLVVR 111
N V V G H V+L + +SV LV+
Sbjct: 73 NEVCVLGHTHADVVKLFQSVPIGQSVNLVLC 103
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 108 bits (271), Expect = 8e-31
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query: 27 HAHPRVVELPKTD-EGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
H V L G G + G +SP IS I A+R G L+ GD++++
Sbjct: 4 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 138
+NG+ E +A +LL+ + + K+ + V E + ++ +
Sbjct: 64 INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVE 120
Score = 99.5 bits (248), Expect = 2e-27
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 22 AASEGHAHPRVVELPKTDEGLGFNVMGG--KEQNSPIYISRIIPGGVADRHGGLKRGDQL 79
+ V K LG + ++ P+ IS I G VA R G L+ GD+L
Sbjct: 101 SVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKL 160
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
L+++ + ++ AV++L+Q + VKL +R
Sbjct: 161 LAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE 195
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 105 bits (264), Expect = 9e-31
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
+ + + GLG ++ GGK + I+ISR+ G A R G++ GD+LL VN
Sbjct: 16 ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDKLLEVN 74
Query: 84 GVSVEGEDHGKAVELLKQAQRSVKLVVR 111
GV+++G +H +AVE L+ A +V++ V
Sbjct: 75 GVALQGAEHHEAVEALRGAGTAVQMRVW 102
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 106 bits (265), Expect = 9e-31
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 27 HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
+ V L D LG + GG E IYI+ + PG A+ GLK GDQ+L VNG
Sbjct: 18 GGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEG-SGLKVGDQILEVNGR 76
Query: 86 SVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPS 137
S H +AV LLK + R + L V+ ++ + + A P S
Sbjct: 77 SFLNILHDEAVRLLKSS-RHLILTVKDVGRLPHARTTVDETKWIASSSGPSS 127
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 105 bits (263), Expect = 1e-30
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 30 PRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
PR+V L K LGFN+ GGK I+IS++IP A R GL+ GDQ+L+VN V +
Sbjct: 16 PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHR-AGLQEGDQVLAVNDVDFQ 74
Query: 89 GEDHGKAVELLKQAQRSVKLVVRYTP 114
+H KAVE+LK A R + + VR+
Sbjct: 75 DIEHSKAVEILKTA-REISMRVRFFS 99
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 105 bits (263), Expect = 1e-30
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 23 ASEGHAHPRVVELPKTDEGLGFNVMGGKEQN-----SPIYISRIIPGGVADRHGGLKRGD 77
AS + + K LG ++ G ++Q+ + IY+ +IPG A G ++ D
Sbjct: 8 ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPND 67
Query: 78 QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
++L V+ V+V+G VE+L+ A V+L++ +LE
Sbjct: 68 KILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLPLLE 108
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 106 bits (265), Expect = 1e-30
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 24 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
SE +L K+ G GF V+GG E + + I ++ G A G ++ GD ++SVN
Sbjct: 13 SELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72
Query: 84 GVSVEGEDHGKAVELLKQAQ--RSVKLVVR 111
V G H + V++ + SV L +
Sbjct: 73 DTCVLGHTHAQVVKIFQSIPIGASVDLELC 102
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 105 bits (263), Expect = 1e-30
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
++VEL K +GLGF+++ ++ P I I ++ GVA+R GGL GD+L+SVN
Sbjct: 16 VKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEY 75
Query: 86 SVEGEDHGKAVELLKQA-QRSVKLVVRYTP 114
++ +AVE+LK V L + P
Sbjct: 76 CLDNTSLAEAVEILKAVPPGLVHLGICSGP 105
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 104 bits (261), Expect = 1e-30
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
V L GF + GGK+ N P+ ISRI PG A + L +GD +++++GV+ +
Sbjct: 2 AYSVTLTG-PGPWGFRLQGGKDFNMPLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDT 59
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPK 115
H +A +K A ++ L ++ + +
Sbjct: 60 MTHLEAQNKIKSASYNLSLTLQKSKR 85
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 105 bits (263), Expect = 1e-30
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 31 RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
V L K GLGF V P+ IS +I GG A++ G ++ GD +L+VN +
Sbjct: 3 ISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 61
Query: 90 EDHGKAVELLKQAQR--SVKLVVRYTPKVLEEMEMRFDKQ---RTARRRQP 135
+ A+E+L+ V L++R +E F +T R QP
Sbjct: 62 LSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 112
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 104 bits (261), Expect = 2e-30
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 31 RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
+ L K +GLG +++G + ++ +++S I+ GG+AD G L +GDQ+L VNG V
Sbjct: 6 LTIGLQKKPGKGLGLSIVGKRN-DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRN 64
Query: 90 EDHGKAVELLKQAQRSVKLVVRY 112
LLK + +V L V
Sbjct: 65 ATQEAVAALLKCSLGTVTLEVGR 87
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 104 bits (261), Expect = 2e-30
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 31 RVVELPKTD-EGLGFNVMGGKEQNSP------IYISRIIPGGVADRHGGLKRGDQLLSVN 83
+V L KT + G ++ G+ ++SP I+I I+P A G LK GD++LS+N
Sbjct: 7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66
Query: 84 GVSVEGEDHGKAVELLKQAQRSVKLVVR 111
G V ++L+K+A ++L ++
Sbjct: 67 GKDVRNSTEQAVIDLIKEADFKIELEIQ 94
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 103 bits (260), Expect = 4e-30
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 23 ASEGHAHP--RVVELPKTD-EGLGFNVMGGKE---------QNSPIYISRIIPGGVADRH 70
S G + P R + + K E LG ++ GG + I+IS++ P G A R
Sbjct: 1 GSSGSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRD 60
Query: 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
G L+ G +LL VN S+ G HG+AV+LL+ ++ ++V
Sbjct: 61 GRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVC 101
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 102 bits (257), Expect = 6e-30
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 22 AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
+S P V L GF ++GG++ ++P+ ISR+ G A L GD + +
Sbjct: 1 GSSGSSGMPHSVTLRG-PSPWGFRLVGGRDFSAPLTISRVHAGSKAAL-AALCPGDLIQA 58
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
+NG S E H +A +K + L V P
Sbjct: 59 INGESTELMTHLEAQNRIKGCHDHLTLSVSSGP 91
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 102 bits (257), Expect = 6e-30
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 31 RVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
V L K D E LG ++ ++ ++I ++ GG+A + G L D++L++NG ++
Sbjct: 5 LQVALHKRDSGEQLGIKLVRRTDEP-GVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLK 63
Query: 89 GEDHGKAVELLKQAQRSVKLVVRYTPKVLEEM 120
A ++++ + V L + K E+
Sbjct: 64 YGTPELAAQIIQASGERVNLTIARPGKPEIEL 95
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 103 bits (258), Expect = 6e-30
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 33 VELPKTDEGLGFNVMGG------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
VEL K ++GLG +++G + I++ + GG A R G ++ DQ++ V+G+S
Sbjct: 13 VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 72
Query: 87 VEGEDHGKAVELLKQAQRSVKLVVR 111
+ G A +L+ + +V+ V+
Sbjct: 73 LVGVTQNFAATVLRNTKGNVRFVIG 97
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 102 bits (257), Expect = 1e-29
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 29 HPRVVELPKTD-EGLGFNVMGGKEQNS---PIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
H V EL K GLGF+V+G + +N I++ I G VA R G LK DQ+L++NG
Sbjct: 20 HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79
Query: 85 VSV-EGEDHGKAVELLKQAQRSVKLVVR 111
++ + H +A+ +L++A+ +V+LV+
Sbjct: 80 QALDQTITHQQAISILQKAKDTVQLVIA 107
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 103 bits (258), Expect = 1e-29
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 4 GSPDVRASATAKATVAAFAASEGHAHPRVVELPK-TDEGLGFNVMGGKEQN---SPIYIS 59
GS ++G +++ + + GLGF+V+ + QN I++
Sbjct: 1 GSSGSSGLGNEDFNSVIQQMAQGR-QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVK 59
Query: 60 RIIPGGVADRHGGLKRGDQLLSVNGVSV-EGEDHGKAVELLKQAQRSVKLVVRYTPK 115
+ PG VADR LK DQ+L++N + + H +A+ LL+Q S++L+V P
Sbjct: 60 DVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPV 116
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 102 bits (256), Expect = 1e-29
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
+ V + GLG ++ G Q I+IS + PG ++ GL+ GDQ++ VNGV
Sbjct: 14 NKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAE-VGLEIGDQIVEVNGVD 72
Query: 87 VEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
DH +AV +LK ++ +V + L +
Sbjct: 73 FSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTD 107
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 102 bits (257), Expect = 2e-29
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 5 SPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRI 61
+ ++ ++L K EGLGF++ ++PIY+ I
Sbjct: 6 HHHHHHHGSENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNI 65
Query: 62 IPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS--VKLVVR 111
+P G A + G LK GD+L+ VNGV + G+ + V LL+ + V L+V
Sbjct: 66 LPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVF 117
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 102 bits (256), Expect = 2e-29
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 26 GHAHPRVVELPK----TDEGLGFNVMGGKEQNS-----PIYISRIIPGGVADRHGGLKRG 76
HA ++ K + GLG ++GGKE YI++I+PGG A++ G L G
Sbjct: 12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEG 71
Query: 77 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
Q+L NG+ + + + + ++ Q ++ VR +
Sbjct: 72 MQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM 111
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 104 bits (260), Expect = 2e-29
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 28 AHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
+ V L + EGLG +V GG E ++IS +I GG AD GL+ GD+++ +NG S
Sbjct: 83 RKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADS-VGLQVGDEIVRINGYS 141
Query: 87 VEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
+ H + + L++ + V + VR+ +
Sbjct: 142 ISSCTHEEVINLIRTEKT-VSIKVRHIGLI 170
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 101 bits (254), Expect = 3e-29
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 31 RVVELPKTDEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
VEL K D LG +V + ++ IY+ +IP G A+ G + +GD++L+V
Sbjct: 11 FEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 70
Query: 83 NGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
NGVS+EG H +AVE L+ + V L++
Sbjct: 71 NGVSLEGATHKQAVETLRNTGQVVHLLLE 99
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 102 bits (255), Expect = 3e-29
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 31 RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
V L K GLGF V P+ IS +I GG A++ G ++ GD +L+VN +
Sbjct: 10 ISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 68
Query: 90 EDHGKAVELLKQA--QRSVKLVVRYTPKVLEEMEMRFDKQ---RTARRRQPPS 137
+ A+E+L+ + V L++R +E F +T R QP
Sbjct: 69 LSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQPLG 121
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 101 bits (253), Expect = 4e-29
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 22 AASEGHAHPRVVEL-PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADR-HGGLKRGDQL 79
H + ++ + P + GFNV GG +Q P+ +SR+ PG AD L GDQ+
Sbjct: 10 NGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQV 69
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 113
+ +NG + H + V +K + +
Sbjct: 70 VLINGRDIAEHTHDQVVLFIKASCERHSGELMLL 103
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 100 bits (251), Expect = 4e-29
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ L K G GF++ G K YI + PG A++ GL GD+L+ VNG +VE
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKG-KLGQYIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
E H + V ++ A +V+L+V
Sbjct: 62 ETHQQVVSRIRAALNAVRLLV 82
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 101 bits (253), Expect = 5e-29
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 27 HAHPRVVELPKTD-EGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
H V L G G + G +SP IS I A+R G L+ GD++++
Sbjct: 13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 72
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEE 119
+NG+ E +A +LL+ + + K+ + V E
Sbjct: 73 INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAES 110
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 100 bits (252), Expect = 6e-29
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 23 ASEGHAHPRVVELPKTDE-GLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKR 75
S V L + G G + GG++ + I IS ++ GG A+ G L+
Sbjct: 1 GSHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQE 58
Query: 76 GDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
D++ VNGVS++ +H AV+ L+++ ++ K+ +R
Sbjct: 59 NDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 101 bits (252), Expect = 6e-29
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 24 SEGHAHPRVVEL-PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADR-HGGLKRGDQLLS 81
H + ++ + P + GFNV GG +Q P+ +SR+ PG AD L GDQ++
Sbjct: 10 GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVL 69
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 113
+NG + H + V +K + +
Sbjct: 70 INGRDIAEHTHDQVVLFIKASCERHSGELMLL 101
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 100 bits (251), Expect = 6e-29
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 23 ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
+S PR+ L K GF++ + + +Y++ I P GVA R G+ D L+ V
Sbjct: 2 SSGSSGQPRLCYLVKEGGSYGFSLKTVQGKK-GVYMTDITPQGVAMR-AGVLADDHLIEV 59
Query: 83 NGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTA 130
NG +VE H + VE +K++ V ++ V +E + R +Q++
Sbjct: 60 NGENVEDASHEEVVEKVKKSGSRVMFLL-----VDKETDKRHVEQKSG 102
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 100 bits (251), Expect = 9e-29
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 13/95 (13%)
Query: 28 AHPRVVELPKTDEGLGFNVMGGKEQNSP------------IYISRIIPGGVADRHGGLKR 75
PRVV + K++ G GFNV G + ++S ++PGG ADR G+++
Sbjct: 5 GSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADR-AGVRK 63
Query: 76 GDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
GD++L VNGV+VEG H + V+L++ ++ + L V
Sbjct: 64 GDRILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 99.7 bits (249), Expect = 1e-28
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PRVV + K G GF + G EQ I I PG A+ GLK D +++VNG SVE
Sbjct: 6 PRVVVIKKGSNGYGFYLRAGPEQK-GQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEA 63
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
DH VE++++ L+V
Sbjct: 64 LDHDGVVEMIRKGGDQTTLLV 84
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 99.3 bits (248), Expect = 2e-28
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ L K +G GFN+ K + YI + PG A R GL+ D+L+ VNG +VEG
Sbjct: 5 PRLCHLRKGPQGYGFNLHSDKSRP-GQYIRSVDPGSPAAR-SGLRAQDRLIEVNGQNVEG 62
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
H + V +K + +L+V
Sbjct: 63 LRHAEVVASIKAREDEARLLV 83
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 99.3 bits (248), Expect = 2e-28
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 19 AAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQ 78
+ +S G V+L GF + GG E P+ +S+I GG A ++ GD+
Sbjct: 1 GSSGSSGGSFQYVPVQLQG-GAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDE 59
Query: 79 LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
L+++NG + G +A+ L+K + R +KL+VR
Sbjct: 60 LVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSG 96
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 99.5 bits (248), Expect = 3e-28
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 31 RVVELPK--TDEGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQL 79
R V L K T++ LGF + G E+ I+ISR++PGG+A G L D++
Sbjct: 31 RRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEV 90
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
L VNG+ V G+ + +++ R++ + VR
Sbjct: 91 LEVNGIEVSGKSLDQVTDMMIANSRNLIITVR 122
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 98.7 bits (246), Expect = 3e-28
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 23 ASEGHAHP--RVVELPK-TDEGLGFNVMGG--KEQNSPIYISRIIPGGVADRHGGLKRGD 77
S G + R V L K EGLG ++ I+ ++ GG A+R G L GD
Sbjct: 1 GSSGSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGD 60
Query: 78 QLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 116
+L ++NG S+ G +++ Q SV L + + P V
Sbjct: 61 RLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPPV 101
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 99.1 bits (247), Expect = 3e-28
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 24 SEGHAHP---RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQL 79
S GH ++V + K D LG V + + + ISRI+ GG A++ G L GD++
Sbjct: 17 SIGHYGGETVKIVRIEKARDIPLGATV---RNEMDSVIISRIVKGGAAEKSGLLHEGDEV 73
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
L +NG+ + G+D + +LL ++ V+
Sbjct: 74 LEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI 105
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 98.1 bits (245), Expect = 4e-28
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
V L GF + GGK+ N P+ IS + GG A + ++ GD +LS++G++ +
Sbjct: 3 SNYSVSL-VGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQ 60
Query: 89 GEDHGKAVELLKQAQRSVKLVVR 111
G H +A +K S+ + ++
Sbjct: 61 GMTHLEAQNKIKGCTGSLNMTLQ 83
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 99.4 bits (248), Expect = 5e-28
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 19 AAFAASEGHAHPRVVELPKTD-EGLGFNVMGGK-----EQNSPIYISRIIPGGVADRHGG 72
++ + VEL + D + LG ++G + S IY+ +IPG A +G
Sbjct: 5 SSGGSDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGH 64
Query: 73 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
++ D++++V+GV+++G + VE+L+ A + V L +
Sbjct: 65 IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLV 103
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 98.3 bits (245), Expect = 5e-28
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSP-IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
+V + K+ LG + GG P I I GG A G LK G +L VNG+++ G
Sbjct: 8 TLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
++H +A ++ +A ++
Sbjct: 68 KEHREAARIIAEAFKTKDRDY 88
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 97.8 bits (244), Expect = 6e-28
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 33 VELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
V+L K + LG ++ + I+ +I G + L+RGD + NG ++EG
Sbjct: 12 VDLMKKAGKELGLSLSPNEI---GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 68
Query: 92 HGKAVELLKQAQRSVKLVV-RYTP 114
+ L K A V + V R P
Sbjct: 69 FQVSYALFKGANGKVSMEVTRPKP 92
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 97.8 bits (244), Expect = 8e-28
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 33 VELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
V+L K + LG ++ + I+ +I G + L+RGD + NG ++EG
Sbjct: 6 VDLMKKAGKELGLSLSPNE---IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 62
Query: 92 HGKAVELLKQAQRSVKLVV-RYTP 114
L K A V + V R P
Sbjct: 63 FQVCYALFKGANGKVSMEVTRPKP 86
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 98.3 bits (245), Expect = 9e-28
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 30 PRVVELPKTD-EGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
V L K G G V GG++ + I IS ++PGG AD G L+ D+++ V
Sbjct: 15 QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV 72
Query: 83 NGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
NG +E H AV+ L+++ + +VV+ KV
Sbjct: 73 NGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV 106
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 97.3 bits (243), Expect = 9e-28
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
P++ L K + G GF++ + +I + GG AD GL+ D ++ VNGV+V
Sbjct: 4 PKLCRLAKGENGYGFHLNAIRGLP-GSFIKEVQKGGPADL-AGLEDEDVIIEVNGVNVLD 61
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
E + K V+ ++ + ++V L+V
Sbjct: 62 EPYEKVVDRIQSSGKNVTLLV 82
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 97.0 bits (242), Expect = 1e-27
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
V++ GF + GG++ ++PI ++++ G A L+ GD ++++NG S EG
Sbjct: 3 ALTVDVAG-PAPWGFRITGGRDFHTPIMVTKVAERGKAKD-ADLRPGDIIVAINGESAEG 60
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKV 116
H +A ++Q+ ++L + +
Sbjct: 61 MLHAEAQSKIRQSPSPLRLQLDRITSL 87
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 97.5 bits (243), Expect = 1e-27
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSP--IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
V + GLG ++GG +N +YI +IPGG + G LK GDQL+S+N S+
Sbjct: 16 FRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMI 75
Query: 89 GEDHGKAVELLKQAQRSVKLVVR 111
G +A ++ +A+ +
Sbjct: 76 GVSFEEAKSIITRAKLRSESPWE 98
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 96.6 bits (241), Expect = 2e-27
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
V L GF + GGK+ N P+ ISR+ PGG A + G+ GD +LS++G +
Sbjct: 3 DSFKVVLEG-PAPWGFRLQGGKDFNVPLSISRLTPGGKAAQ-AGVAVGDWVLSIDGENAG 60
Query: 89 GEDHGKAVELLKQAQRSVKLVVR 111
H +A ++ + L +
Sbjct: 61 SLTHIEAQNKIRACGERLSLGLS 83
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 97.2 bits (242), Expect = 2e-27
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 5 SPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPG 64
S+ + ++V+ K D +G + GG + I+++ ++
Sbjct: 5 HHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGD-SVGLRLAGGNDV--GIFVAGVLED 61
Query: 65 GVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS--VKLVVRYTPKVLEEM 120
A + G L+ GDQ+L VN V +AV L + V ++ + V +
Sbjct: 62 SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRI 118
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 96.7 bits (241), Expect = 2e-27
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ RVV + K G GF + G EQ I I PG A+ GLK D +++VNG SV
Sbjct: 5 SSGRVVVIKKGSNGYGFYLRAGPEQK-GQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSV 62
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRYTP 114
E DH VE++++ L+V
Sbjct: 63 EALDHDGVVEMIRKGGDQTTLLVLDKE 89
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 96.7 bits (241), Expect = 2e-27
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
V LP GF + GG + N P+ I+RI PG A L GD +L+++G E
Sbjct: 7 GNVVLPG-PAPWGFRLSGGIDFNQPLVITRITPGSKAAA-ANLCPGDVILAIDGFGTESM 64
Query: 91 DHGKAVELLKQAQRSVKLVVR 111
H A + +K A + L +
Sbjct: 65 THADAQDRIKAASYQLCLKID 85
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 95.8 bits (239), Expect = 3e-27
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
R VE+ + G GF + G P +S ++ G AD GL+ GDQ+L+VN ++V+
Sbjct: 3 VRSVEVARGRAGYGFTLSGQA----PCVLSCVMRGSPADF-VGLRAGDQILAVNEINVKK 57
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTP 114
H V+L+ + + +V+
Sbjct: 58 ASHEDVVKLIGKCSGVLHMVIAEGV 82
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 96.2 bits (240), Expect = 3e-27
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQN--SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
PR + L K +G GF + K + ++ + PG A + G++ GD+L++V G SV
Sbjct: 4 PRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKK-AGMQAGDRLVAVAGESV 62
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
EG H + V ++ V L V
Sbjct: 63 EGLGHEETVSRIQGQGSCVSLTV 85
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 96.3 bits (240), Expect = 3e-27
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ + K G GFN+ K + +I + P A+ GL+ D+++ VNGV +EG
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKP-GQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEG 67
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
+ HG V ++ KL+V
Sbjct: 68 KQHGDVVSAIRAGGDETKLLV 88
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 95.5 bits (238), Expect = 4e-27
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 30 PRVVELPK--TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
V L K E GF+V G + +Y+ I P G D GGLK D+LL VN V
Sbjct: 7 LHKVTLYKDSGMEDFGFSVADGLLEKG-VYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRT 64
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRYTP 114
D V L+ ++ + LV+ P
Sbjct: 65 RDFDCCLVVPLIAESGNKLDLVISRNP 91
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 97.7 bits (243), Expect = 5e-27
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 33 VELPKTDEGLGFNVMGGK------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
VEL K EGLG +++G + I++ + GG A R G ++ D L+ V+G S
Sbjct: 84 VELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 143
Query: 87 VEGEDHGKAVELLKQAQRSVKLVVR 111
+ G A +L+ + V+ ++
Sbjct: 144 LVGVTQSFAASVLRNTKGRVRFMIG 168
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 95.5 bits (238), Expect = 7e-27
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 33 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
V L GF + GGK+ N P+ IS + GG A + ++ GD +LS++G+S +G H
Sbjct: 9 VSLVG-PAPWGFRLQGGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTH 66
Query: 93 GKAVELLKQAQRSVKLVVRYTPKV 116
+A +K S+ + ++
Sbjct: 67 LEAQNKIKACTGSLNMTLQRASAA 90
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 94.3 bits (235), Expect = 1e-26
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
V L K+ + + G S I++ + G+A + G L GD +L +NG E
Sbjct: 4 VLLMKSRANEEYGLRLG----SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSL 59
Query: 93 GKAVELLKQAQRSVKLVVR 111
A +L+++++ ++LVV
Sbjct: 60 TDARKLIEKSRGKLQLVVL 78
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 94.3 bits (235), Expect = 2e-26
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
V++ GF + GG++ ++PI ++++ G A+ L+ GD ++++NG S E
Sbjct: 7 GLTVDVAG-PAPWGFRISGGRDFHTPIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAEN 64
Query: 90 EDHGKAVELLKQAQRSVKLVVR 111
H +A ++Q+ ++L +
Sbjct: 65 MLHAEAQSKIRQSASPLRLQLD 86
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 93.6 bits (233), Expect = 2e-26
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
A P V L K+ + + + S I++ I +A R G ++ GD +L +NG
Sbjct: 1 AKPTKVTLVKSAKNEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVT 56
Query: 88 EGEDHGKAVELLKQAQRSVKLVVRYTPK 115
E A L+++++ +K+VV+ +
Sbjct: 57 ENMSLTDAKTLIERSKGKLKMVVQRDER 84
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 93.6 bits (233), Expect = 3e-26
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 31 RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
R+++ K T+E +G + + ++RI+ GG+ R G L GD++L +NG +V
Sbjct: 14 RLIQFEKVTEEPMGICLKLN--EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 90 EDHGKAVELLKQAQRSVKLVV 110
+ + +K+ + + L V
Sbjct: 72 HSVDQLQKAMKETKGMISLKV 92
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 94.1 bits (234), Expect = 4e-26
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 22 AASEGHAHPRV---------VELPKTD--EGLGFNVMGG--KEQNSPIYISRIIPGGVAD 68
+ S G H + V+L + + + LG V E + IYIS I P +A
Sbjct: 3 SGSSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAA 62
Query: 69 RHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
+ G ++ GD+++ +NG+ V+ + A+ ++ + L+ R ++ E
Sbjct: 63 KDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWM 115
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 94.1 bits (234), Expect = 5e-26
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 10 ASATAKATVAAFAASEGHAHPRVVELPKTD---EGLGFNVMGGKEQ----NSPIYISRII 62
S+ K +A S + +E+P D GLG ++ G K + + I+I II
Sbjct: 4 GSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSII 63
Query: 63 PGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-------QRSVKLVVR 111
GG A + G L+ DQL++VNG ++ G+ + +A+E L+++ + ++LV+
Sbjct: 64 HGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVIL 119
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 93.8 bits (233), Expect = 6e-26
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ + K G GFN+ K + +I + P A+ GL+ D+++ VNGV +EG
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKP-GQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEG 67
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 138
+ HG V ++ KL+V V E + F K R ++ +
Sbjct: 68 KQHGDVVSAIRAGGDETKLLV-----VDRETDEFFKKCRVIPSQEHLNG 111
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 100 bits (250), Expect = 7e-26
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 22 AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
+ PR + + + GLGFN++GG++ I+IS I+ GG AD G L++GDQ+LS
Sbjct: 300 GEEDIPREPRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILS 358
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPS 137
VNGV + H +A LK A ++V ++ +Y P+ E + R
Sbjct: 359 VNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLG 414
Score = 96.1 bits (238), Expect = 3e-24
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 5 SPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYIS 59
SP V + +EG + L + + GLGF++ GG + + I+I+
Sbjct: 35 SPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFIT 94
Query: 60 RIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
+IIPGG A + G L+ D +L VN V V H AVE LK+A V+L V
Sbjct: 95 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 147
Score = 61.8 bits (149), Expect = 2e-12
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 27 HAHPRVVELPKTDEGLGFNVMGGK-----EQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
++L K +GLGF++ GG ++ IY+++II GG A + G L+ GD++L+
Sbjct: 152 AEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILA 211
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 138
VN V +E H AV LK V L V T+ + ++
Sbjct: 212 VNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNE 268
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 91.7 bits (228), Expect = 1e-25
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 39 DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
GF ++GGK+ P+ ISR+ PG A L GD + +++G + H +A
Sbjct: 12 PGPWGFRLVGGKDFEQPLAISRVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEAQNR 70
Query: 99 LKQAQRSVKLVVR 111
+K ++ L V
Sbjct: 71 IKGCTDNLTLTVA 83
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 91.7 bits (228), Expect = 2e-25
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 23 ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNS--------PIYISRIIPGGVADRHGGLK 74
E V + K D LGF++ GG I+++R+ P G A L+
Sbjct: 5 GHELAKQEIRVRVEK-DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQ 61
Query: 75 RGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
GD+++ NG S +HG+AV LLK Q +V+L++
Sbjct: 62 PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 91.3 bits (227), Expect = 2e-25
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 31 RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
R+V+ K TDE +G + + + ++RI+ GG+ R G L GD++ +NG+SV
Sbjct: 3 RLVQFQKNTDEPMGITLKMNEL--NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVAN 60
Query: 90 EDHGKAVELLKQAQRSVKLVVR 111
+ + ++L++ + S+ +
Sbjct: 61 QTVEQLQKMLREMRGSITFKIV 82
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 91.7 bits (228), Expect = 3e-25
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 33 VELPK-TDEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
V L LG +++G + + IYI I+ GG G ++ GD LL VN ++ E
Sbjct: 9 VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 90 EDHGKAVELLKQAQRS---VKLVVR 111
+ AV +L+ + L V
Sbjct: 69 MSNDDAVRVLRDIVHKPGPIVLTVA 93
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 90.9 bits (226), Expect = 3e-25
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
R + +P+ +G GF + P+ + + GG A+R GL++ D +L +N VE
Sbjct: 4 YRQITIPRGKDGFGFTICCDS----PVRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEH 58
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
+ ++ + L+V ++
Sbjct: 59 WKCVELAHEIRSCPSEIILLVWRMVPQVK 87
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 95.6 bits (237), Expect = 3e-25
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
R V + K D GLG ++ GG+E PI IS+I G AD+ L GD +LSVNG
Sbjct: 76 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGED 135
Query: 87 VEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPS 137
+ H +AV+ LK+ + V L V+Y +V + P S
Sbjct: 136 LSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPAS 186
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 90.9 bits (226), Expect = 4e-25
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 22 AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
+ S G H ++ + GF++ + P+ + + GG A G L GDQ+L
Sbjct: 3 SGSSGVRHTVKIDKDTLLQDYGFHISE----SLPLTVVAVTAGGSAH--GKLFPGDQILQ 56
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
+N E +AV++L++A+ S+ + V
Sbjct: 57 MNNEPAEDLSWERAVDILREAEDSLSITVV 86
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 91.8 bits (228), Expect = 4e-25
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNS---PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+ LG V+GGK S +I+++ G +AD G L+ GD++L NG +
Sbjct: 39 DGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLL 98
Query: 88 EGEDHGKAVELLKQAQRS--VKLVVR 111
+G + ++ +++ V+LVV
Sbjct: 99 QGATFEEVYNIILESKPEPQVELVVS 124
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 90.4 bits (225), Expect = 4e-25
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 22 AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
+S R V + K G GF V G + + + + PGG A + G+K GD+++
Sbjct: 1 GSSGSSGVQRCVIIQKDQHGFGFTVSGDR----IVLVQSVRPGGAAMK-AGVKEGDRIIK 55
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
VNG V H + V+L+K ++ +
Sbjct: 56 VNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSS 88
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 89.4 bits (222), Expect = 1e-24
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 37 KTDEGLGFNVMGGKEQNS--------PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+ D LGF++ GG I+++R+ P G A L+ GD+++ NG S
Sbjct: 10 EKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFI 67
Query: 89 GEDHGKAVELLKQAQRSVKLVVR 111
+HG+AV LLK Q +V+L++
Sbjct: 68 NIEHGQAVSLLKTFQNTVELIIV 90
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 89.0 bits (221), Expect = 2e-24
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 26 GHAHPRVVELPKTD-EGLGFNVMGGKEQNS-------PIYISRIIPGGVADRHGGLKRGD 77
G +V+ L K D + GF + + +++R+ A GL GD
Sbjct: 1 GSQQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQL-AGLTPGD 59
Query: 78 QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
+ SVNG++VEG H + V+++K + ++L Y
Sbjct: 60 TIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 88.5 bits (220), Expect = 2e-24
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 26 GHAHPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
G PR + + K G +GF GK I+ I+ A R GL + +NG
Sbjct: 1 GAMDPRTITMHKDSTGHVGFIFKNGK-------ITSIVKDSSAAR-NGLLTEHNICEING 52
Query: 85 VSVEGEDHGKAVELLKQAQRSVKLVV 110
+V G + ++L + V + +
Sbjct: 53 QNVIGLKDSQIADILSTSGTVVTITI 78
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 88.6 bits (220), Expect = 3e-24
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
+ V + K+++ LG + +I RI GGV D + GD + S+NG ++ G
Sbjct: 6 EKEVNVYKSEDSLGLTITDNG--VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVG 63
Query: 90 EDHGKAVELLKQAQRSVKLVVR 111
H + LK+ ++ ++
Sbjct: 64 WRHYDVAKKLKELKKEELFTMK 85
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 91.5 bits (227), Expect = 3e-24
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 5/115 (4%)
Query: 8 VRASATAKATVAAFAASEGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGV 66
+ T+ F A V+L K + LG ++ + I+ +I G
Sbjct: 92 FHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEI---GCTIADLIQGQY 148
Query: 67 ADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV-RYTPKVLEEM 120
+ L+RGD + NG ++EG L K A V + V R P + E
Sbjct: 149 PEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPTLRTEA 203
Score = 82.6 bits (204), Expect = 8e-21
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 4/105 (3%)
Query: 32 VVELPKTDEGLGFNVMGGKEQN--SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
++EL + +G V GGK + + I+ + P G LK D + +NG +
Sbjct: 21 LIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHV 80
Query: 90 ED--HGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARR 132
K +L + + E + D + A +
Sbjct: 81 GSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGK 125
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 88.1 bits (219), Expect = 3e-24
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 33 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
V L K+ + + + S I++ I +A R G ++ GD +L +NG E
Sbjct: 4 VTLVKSRKNEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSL 59
Query: 93 GKAVELLKQAQRSVKLVVR 111
A L+++++ +K+VV+
Sbjct: 60 TDAKTLIERSKGKLKMVVQ 78
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 88.7 bits (220), Expect = 4e-24
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 30 PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
PR +L K + + GF + K+ + I I G A++ GL GD++L +NGV V+
Sbjct: 2 PRESKLSKQEGQNYGFFLRIEKDTD-GHLIRVIEEGSPAEK-AGLLDGDRVLRINGVFVD 59
Query: 89 GEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQ 134
E+H + VEL++++ SV L+V + ++ + D + + +
Sbjct: 60 KEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELDQEAK 105
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 91.8 bits (227), Expect = 4e-24
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
PR+ + K G GFN+ K + +I + P A+ GL+ D+++ VNGV +EG
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKP-GQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEG 67
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 138
+ HG V ++ KL+V E + F K R ++ +
Sbjct: 68 KQHGDVVSAIRAGGDETKLLVVD-----RETDEFFKKCRVIPSQEHLNG 111
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 89.2 bits (221), Expect = 4e-24
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 22 AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
A+ +L + GLG V+ + IS +I G A G L+ GD L+S
Sbjct: 20 ASVSSLNKVIQTKLTVGNLGLGLVVIQNGP---YLQISHLINKGAAASDGILQPGDVLIS 76
Query: 82 VNGVSVEGEDHGKAVELLKQAQR--SVKLVVR 111
V +V G + ++LL+ +++
Sbjct: 77 VGHANVLGYTLREFLKLLQNITIGTVLQIKAY 108
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 89.3 bits (221), Expect = 4e-24
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 14/132 (10%)
Query: 3 LGSPDVRASATAKATVAAFAASEGHAHPRVVELPKTD-EGLGFNVMGGKEQN-------- 53
+GS + V + S+ + V L K D EG GF + G K Q
Sbjct: 1 MGSSHHHHHHSQDPLVPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPT 60
Query: 54 ----SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109
+ Y+ + GGVA R GL+ GD L+ VNG +V H + V +++Q ++ +
Sbjct: 61 PAFPALQYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 119
Query: 110 VRYTPKVLEEME 121
V + + E
Sbjct: 120 VVMVTRHPDMDE 131
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 88.7 bits (220), Expect = 4e-24
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 29 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
+PR +L K + + GF + K+ + I I G A++ GL GD++L +NGV V
Sbjct: 13 NPRECKLSKQEGQNYGFFLRIEKDTD-GHLIRVIEEGSPAEK-AGLLDGDRVLRINGVFV 70
Query: 88 EGEDHGKAVELLKQAQRSVKLVV 110
+ E+H + VEL++++ SV L+V
Sbjct: 71 DKEEHAQVVELVRKSGNSVTLLV 93
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 88.3 bits (219), Expect = 6e-24
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
+ PR + + LGF + G +P+ + + P A G + GD ++S+ V
Sbjct: 21 QSMPRSIRFTAEEGDLGFTLRGN----APVQVHFLDPYCSASV-AGAREGDYIVSIQLVD 75
Query: 87 VEGEDHGKAVELLKQA-QRSVKLVV 110
+ + ++LLK + +++ V
Sbjct: 76 CKWLTLSEVMKLLKSFGEDEIEMKV 100
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 86.3 bits (214), Expect = 3e-23
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 22 AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
+ + + + +G GF + SP+ + + GG A+R GL++ D +L
Sbjct: 8 EGDPENGEKLQITIRRGKDGFGFTICCD----SPVRVQAVDSGGPAER-AGLQQLDTVLQ 62
Query: 82 VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
+N VE + ++ + L+V
Sbjct: 63 LNERPVEHWKCVELAHEIRSCPSEIILLVWRVS 95
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 86.0 bits (213), Expect = 4e-23
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 28 AHPRVVELPKTD-EGLGFNVMGGKEQNS-------PIYISRIIPGGVADRHGGLKRGDQL 79
+ ++V + K D E GF + + QN I +I A GL+ GD L
Sbjct: 14 SQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHC-AGLQAGDVL 72
Query: 80 LSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
++NGVS EG + + V+L++ + + +
Sbjct: 73 ANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 85.7 bits (212), Expect = 5e-23
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 23 ASEGHAHPRVVELPKTD-EGLGFNVMGGKEQN------------SPIYISRIIPGGVADR 69
S+ + V L K D EG GF + G K Q + Y+ + GGVA R
Sbjct: 1 GSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWR 60
Query: 70 HGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
GL+ GD L+ VNG +V H + V +++Q ++ + V + +
Sbjct: 61 -AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPD 108
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 86.0 bits (213), Expect = 2e-22
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 26 GHAHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
G PR V L K D +G + ++ I++ + A GL+ GDQ+L +NG
Sbjct: 1 GAMDPREVILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASL-VGLRFGDQVLQING 56
Query: 85 VSVEGEDHGKAVELLKQAQRS-VKLVVRYTPKVLEEMEMRFDKQ 127
+ G KA ++LKQA + + +R P +
Sbjct: 57 ENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTG 100
Score = 56.0 bits (135), Expect = 6e-11
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+ + +GF G I+ I+ A R GL + +NG +V
Sbjct: 89 ERTITMHKDSTGHVGFIFKNG-------KITSIVKDSSAAR-NGLLTEHNICEINGQNVI 140
Query: 89 GEDHGKAVELLKQAQRSVKLVV 110
G + ++L + V + +
Sbjct: 141 GLKDSQIADILSTSGTVVTITI 162
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 82.9 bits (205), Expect = 4e-22
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 31 RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
R+V + K E LG + + + I+RI+ GG+ + G L GD + VNG V G
Sbjct: 8 RMVGIRKTAGEHLGVTF---RVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-G 63
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPK 115
D ELL+ A SV L + P
Sbjct: 64 SDPRALQELLRNASGSVILKILSGPS 89
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 83.2 bits (206), Expect = 5e-22
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQN-------SPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
+ + + + GF++ + + + G A GL+ GD + +N
Sbjct: 4 PPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQE-AGLRAGDLITHIN 62
Query: 84 GVSVEGEDHGKAVELLKQAQRSVKLVV 110
G SV G H VELL ++ + L
Sbjct: 63 GESVLGLVHMDVVELLLKSGNKISLRT 89
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 82.3 bits (204), Expect = 7e-22
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
V + K G GF + + +I+ + R GLK GD ++ VN +V+
Sbjct: 3 ELITVHIVKGPMGFGFTIADSPGGG-GQRVKQIVD---SPRSRGLKEGDLIVEVNKKNVQ 58
Query: 89 GEDHGKAVELLKQAQR--SVKLVVR 111
H + V++L ++ + V L+V+
Sbjct: 59 ALTHNQVVDMLVESPKGSEVTLLVQ 83
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 82.1 bits (203), Expect = 7e-22
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
+ + P GF + I+++ + G A+ L+ D+++++N D
Sbjct: 9 INQTPGKSLDFGFTIKWDIP---GIFVASVEAGSPAEF-SQLQVDDEIIAINNTKFSYND 64
Query: 92 HGKAVELLKQAQRSVKLVVR 111
+ E + +AQ + LV+
Sbjct: 65 SKEWEEAMAKAQETGHLVMD 84
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 83.2 bits (205), Expect = 1e-21
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 27 HAHPRVVELPKT----DEGLGFNVMGGKEQ------------NSPIYISRIIPGGVADRH 70
+ + VE+ K + LGF++ GG +Q + IY++R+ GG A+
Sbjct: 21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEI- 79
Query: 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVR 111
GL+ GD+++ VNG + H +A + L + + V+L+V
Sbjct: 80 AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVT 121
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 82.5 bits (204), Expect = 1e-21
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
PR + + LGF + G +P+ + + P A G K GD ++S+ GV +
Sbjct: 15 PPRGIHFTVEEGDLGFTLRGN----TPVQVHFLDPHCSASL-AGAKEGDYIVSIQGVDCK 69
Query: 89 GEDHGKAVELLKQA-QRSVKLVV 110
+ ++LLK V++ V
Sbjct: 70 WLTVSEVMKLLKSFGGEEVEMKV 92
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 81.3 bits (201), Expect = 2e-21
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 23 ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
+ G+ ++ P LGF+V G I ++ GG+A+R GG++ G +++ +
Sbjct: 7 ETMGNVTTVLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAER-GGVRVGHRIIEI 58
Query: 83 NGVSVEGEDHGKAVELLKQAQRSVKLVV 110
NG SV H K V +L A + +
Sbjct: 59 NGQSVVATPHEKIVHILSNAVGEIHMKT 86
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 78.8 bits (194), Expect = 4e-20
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 29/116 (25%)
Query: 23 ASEGHAHPRVVELPKTDEGLGFNVMGGK----------------------------EQNS 54
+S P+ V L +T +G GF + E
Sbjct: 2 SSGSSGGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMD 61
Query: 55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
I++ ++ GG A GL GD+++ VNG SV G+ + + + L++ + +++L V
Sbjct: 62 TIFVKQVKEGGPAFE-AGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 75.8 bits (186), Expect = 5e-19
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 30 PRVVELPKTD---EGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
+ + + K+D + GF++ +E +Y++ + G+A + GLK GD++L +N
Sbjct: 16 TQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASK-KGLKAGDEILEINNR 74
Query: 86 SVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEM 122
+ + + + L Q S+ L+VR P++ E +E
Sbjct: 75 AADALNSSMLKDFLS--QPSLGLLVRTYPELEEGVES 109
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 79.1 bits (194), Expect = 2e-18
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
++V+ K + +G + GG + I+++ ++ A + G L+ GDQ+L VN V
Sbjct: 10 MKLVKFRKG-DSVGLRLAGGND--VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 65
Query: 90 EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
+AV L + ++ + K +
Sbjct: 66 IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIV 99
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 72.4 bits (178), Expect = 6e-18
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 22 AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
+ S G A + + K +G GF + + +I+ GL GD ++
Sbjct: 3 SGSSGQAELMTLTIVKGAQGFGFTIADSPT---GQRVKQILD---IQGCPGLCEGDLIVE 56
Query: 82 VNGVSVEGEDHGKAVELLKQAQR--SVKLVVR 111
+N +V+ H + V++LK L++
Sbjct: 57 INQQNVQNLSHTEVVDILKDCPIGSETSLIIH 88
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 71.5 bits (175), Expect = 2e-17
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 31 RVVELPKTD---EGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
+ + K+D + GF++ +E +Y++ + G+A + G LK GD++L +N +
Sbjct: 8 HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRA 66
Query: 87 VEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
+ + + L Q S+ L+VR P++
Sbjct: 67 ADALNSSMLKDFLS--QPSLGLLVRTYPEL 94
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 76.2 bits (186), Expect = 2e-17
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 11 SATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRH 70
+ V S +++ P LGF+V G I ++ GG+A+R
Sbjct: 279 GLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNG-------IICSLMRGGIAER- 330
Query: 71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
GG++ G +++ +NG SV H K V+ L + + +
Sbjct: 331 GGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKT 370
Score = 73.1 bits (178), Expect = 3e-16
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 36 PKTDEGLGFNVMGG--KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93
E LG V+ + ++ ++ GG A R G L GDQ++S+NG S+ G
Sbjct: 212 KHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLA 271
Query: 94 KAVELLKQAQRSVKLVVRYTP 114
++K + ++ +
Sbjct: 272 TCQGIIKGLKNQTQVKLNIVS 292
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 75.7 bits (185), Expect = 3e-17
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
++V+ K + +G + GG + I+++ ++ A + G L+ GDQ+L VN V
Sbjct: 3 KLVKFRKG-DSVGLRLAGGND--VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI 58
Query: 91 DHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
+AV L + ++ + K +
Sbjct: 59 IREEAVLFLLDLPKGEEVTILAQKKKDVYRRIV 91
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 69.2 bits (168), Expect = 1e-15
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 40 EGLGFNVMGGKEQ--------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
LGF++ GG + I+++R+ P G A L+ GD+++ NG S +
Sbjct: 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIE 59
Query: 92 HGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPP 136
HG+AV LLK Q +V+L++ + E+R ++
Sbjct: 60 HGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVS 104
Score = 36.5 bits (83), Expect = 0.001
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 30 PRVVELPKTDEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRG-DQLLSVNGVS 86
++ + G+ + + E NSP+ + GLK G D ++V S
Sbjct: 119 SLLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYS 178
Query: 87 V-EGEDHGKAVELLK 100
G H + +
Sbjct: 179 DYYGSHHYSPISINY 193
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 65.6 bits (160), Expect = 4e-15
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 23 ASEGHAHPRV--VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLL 80
A+ + + L K +G GF + + + I+ + GL++GD +
Sbjct: 4 ATLYKKAGLLVTIPLIKGPKGFGFAIADS---PTGQKVKMILD---SQWCQGLQKGDIIK 57
Query: 81 SVNGVSVEGEDHGKAVELLKQAQR--SVKLVVR 111
+ +V+ H + VE+LKQ V L++
Sbjct: 58 EIYHQNVQNLTHLQVVEVLKQFPVGADVPLLIL 90
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 52.1 bits (124), Expect = 8e-10
Identities = 16/89 (17%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 31 RVVELPKTDEG-LGFNVM---GGKEQNSPIYISRIIPGGVA-DRHGGLKRGDQLLSVNGV 85
++ +P T E GF+V + + + + ++ + + GD++L +NG
Sbjct: 17 TLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGT 76
Query: 86 SVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
V + + +KQ ++++L++ + P
Sbjct: 77 PVRTLRVEEVEDAIKQTSQTLQLLIEHDP 105
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 42.1 bits (99), Expect = 1e-05
Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 34 ELPKTDEGLGFNVMGGKEQNSP--IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
+ P G + + + ++ IS ++PG A+ GL+RG ++ +NG + +
Sbjct: 68 DEPIPSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEE-AGLQRGHWIMMMNGDYITKKV 126
Query: 92 HGKAVE 97
+ ++
Sbjct: 127 ESELLQ 132
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 39.6 bits (93), Expect = 1e-04
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
G+G + + + PGG A++ G + GD +++V+G +V+G +LL+
Sbjct: 86 GVGLEITYDGGSGKDVVVLTPAPGGPAEK-AGARAGDVIVTVDGTAVKGMSLYDVSDLLQ 144
Query: 101 -QAQRSVKLVVR 111
+A V++V+
Sbjct: 145 GEADSQVEVVLH 156
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 36.6 bits (84), Expect = 0.001
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 31 RVVELPKTDEGLGFNVMGGKEQNSP--------IYISRIIPGGVADRHGGLKRGDQLLSV 82
R + ++ G ++G + ++ + A G D ++
Sbjct: 81 RETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGA 140
Query: 83 NGVSVEGEDHGKAVELLKQAQRSVKLVV 110
+ V E ED +E + +KL V
Sbjct: 141 DTVMNESEDLFSLIE--THEAKPLKLYV 166
Score = 34.7 bits (79), Expect = 0.004
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 57 YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
++ R+ R G D ++S+NG + ++ L ++ VK+++
Sbjct: 19 HVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIY 73
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 36.5 bits (85), Expect = 0.001
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
L + + I ++I G A R GL+ GD +L++ V+
Sbjct: 242 AELQLREPSFPDVQHGVLIHKVILGSPAHR-AGLRPGDVILAIGEQMVQ 289
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 36.5 bits (85), Expect = 0.001
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+ L + S YI +IP A+ GGLK D ++S+NG SV
Sbjct: 240 KELKDRHRDFPDVISGAYIIEVIPDTPAEA-GGLKENDVIISINGQSVV 287
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 35.0 bits (81), Expect = 0.002
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
+ L + E +S IY+ + P + R GG++ GD ++ VNG + + EL
Sbjct: 21 DELKASNPDFPEVSSGIYVQEVAPNSPSQR-GGIQDGDIIVKVNGRPLV-----DSSELQ 74
Query: 100 KQ--AQRSVKLVVR 111
+ + + L VR
Sbjct: 75 EAVLTESPLLLEVR 88
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria,
peptid module, hydrolase; 2.75A {Homo sapiens} SCOP:
b.36.1.4
Length = 113
Score = 34.6 bits (80), Expect = 0.002
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
L + + I ++I G A R GL+ GD +L++ V+
Sbjct: 21 AELQLREPSFPDVQHGVLIHKVILGSPAHR-AGLRPGDVILAIGEQMVQ 68
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 35.7 bits (83), Expect = 0.003
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 13 TAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG 72
+ T+ +S A L EG + K+ I I ++ G A + G
Sbjct: 326 EVEVTLDTSTSSSASAEMITPAL----EGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG- 380
Query: 73 LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
L++ D ++ VN V + ++L + L +
Sbjct: 381 LQKDDVIIGVNRDRV--NSIAEMRKVLAAKPAIIALQIV 417
Score = 32.2 bits (74), Expect = 0.037
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 58 ISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+S ++PG + + G+K GD + S+NG +
Sbjct: 267 VSEVLPGSGSAK-AGVKAGDIITSLNGKPLN 296
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 35.4 bits (80), Expect = 0.003
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 50 KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109
K + + + A H GL GD++++++ + + + +E +V +
Sbjct: 492 KASPQGLDVLNVYHDESAY-HAGLSAGDKIIAIDHLQATEQSVKRILERYI-PGDTVTIH 549
Query: 110 V 110
Sbjct: 550 A 550
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 33.4 bits (76), Expect = 0.006
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 113
P+ + I +A + G +L +V+G+ D + + K S + V
Sbjct: 3 RPV-VGEIAANSIAAE-AQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPF 60
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 33.0 bits (76), Expect = 0.006
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+Y+ ++P A G L+ GD++ +++G +
Sbjct: 7 VYVMSVLPNMPAA--GRLEAGDRIAAIDGQPIN 37
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 33.7 bits (77), Expect = 0.006
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 45 NVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
N+ Q + I ++PG A L G + S+NG+
Sbjct: 16 NLYFQGHQPDGVQIDSVVPGSPAS--KVLTPGLVIESINGMPTS 57
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 34.2 bits (79), Expect = 0.008
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 58 ISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
+ R G++ GD ++S N V D + ++ ++ + + V
Sbjct: 390 VVGASENSAGWR-AGIRPGDIIISANKKPV--TDVKSLQTIAQEKKKELLVQVL 440
Score = 32.7 bits (75), Expect = 0.028
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 47 MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
MG E +S++ P A+ GLK GD + +N +
Sbjct: 275 MGYPEDFQGALVSQVNPNSPAEL-AGLKAGDIITQINDTKIT 315
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 32.2 bits (74), Expect = 0.010
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
IY S ++ A G ++ GD+++S +G + +
Sbjct: 3 IYASSVVENMPAK--GKIEVGDKIISADGKNYQ 33
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 33.7 bits (78), Expect = 0.011
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
I ++ + P G A G++ D ++SV+
Sbjct: 246 IVVNEVSPDGPAAN-AGIQVNDLIISVDNKPAIS 278
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 33.0 bits (76), Expect = 0.013
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+ NV G + + + A+ G L++ D + V+ +
Sbjct: 50 NIPSNVTSG------VIVRSVQSNMPAN--GHLEKYDVITKVDDKEIA 89
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 33.0 bits (76), Expect = 0.017
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 57 YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
I ++ GG A G+ +G + V+ + D
Sbjct: 245 KIVEVVAGGAAAN-AGVPKGVVVTKVDDRPINSAD 278
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 32.6 bits (75), Expect = 0.026
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 58 ISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+S ++PG + + G+K GD + S+NG +
Sbjct: 267 VSEVLPGSGSAK-AGVKAGDIITSLNGKPLN 296
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 31.4 bits (71), Expect = 0.030
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSVKLVV 110
+S + + GL+ GD +++NG+ + D L + + L V
Sbjct: 39 YRVSPGKDPVLFES-IGLQDGDMAVALNGLDL--TDPNVMNTLFQSMNEMTEMSLTV 92
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 32.3 bits (74), Expect = 0.034
Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 37 KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAV 96
G+ M K ++ + ++ + G A + GLK+GD ++ N +V ++ +
Sbjct: 366 SIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQ-IGLKKGDVIIGANQQAV--KNIAELR 422
Query: 97 ELLKQAQRSVKLVVR 111
++L + L ++
Sbjct: 423 KVLDSKPSVLALNIQ 437
Score = 31.9 bits (73), Expect = 0.045
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 58 ISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+S+++P A + G+K GD + S+NG +
Sbjct: 290 VSQVLPNSSAAK-AGIKAGDVITSLNGKPIS 319
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 30.6 bits (69), Expect = 0.046
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSVKLVV 110
+S + + GL+ GD +++NG+ + D L + + L V
Sbjct: 21 YRVSPGKDPVLFES-IGLQDGDMAVALNGLDL--TDPNVMNTLFQSMNEMTEMSLTV 74
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 30.7 bits (70), Expect = 0.053
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+Y+ + A L GD + ++G + +
Sbjct: 9 VYVMSVKDDVPAA--DVLHAGDLITEIDGNAFK 39
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 31.7 bits (71), Expect = 0.077
Identities = 12/117 (10%), Positives = 33/117 (28%), Gaps = 21/117 (17%)
Query: 34 ELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGV--------ADRHGGLKRGDQLLSVNGV 85
+ P + + + +++ G +G G + ++G
Sbjct: 731 KDPFRSGRIACDFKLDGDH---YVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGE 787
Query: 86 SVEGED---------HGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRR 133
+V G + + + K + + ++ +R+ A RR
Sbjct: 788 TVGAGSNIYRVLSEKAGTSARIRLSGKGGDKRDLMIDI-LDDDRFIRYRSWVEANRR 843
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.34
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 3/16 (18%)
Query: 99 LKQAQRSVKLVVRYTP 114
LK+ Q S+KL Y
Sbjct: 22 LKKLQASLKL---YAD 34
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane
protein, PDZ domain, hydrolase, inner membrane,
membrane, metal-binding; HET: MLY MSE; 0.98A
{Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 28.2 bits (63), Expect = 0.35
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 58 ISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
+ + P A GL+ GD+++ V+G +
Sbjct: 8 LENVQPNSAASX-AGLQAGDRIVXVDGQPLT 37
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.59
Identities = 29/158 (18%), Positives = 47/158 (29%), Gaps = 64/158 (40%)
Query: 8 VRASATAKA-TVAAFAAS-------------EGH-AHPRVVELPKT-----DEGLG---- 43
V A A A+ + +F S + A+P P + G
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 44 -FNVMG-GKEQ--------------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNG--V 85
++ +EQ + IS L G + L V+G
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-------------LVNGAKNLVVSGPPQ 384
Query: 86 SVEGEDH----GKAVELLKQA-----QRSVKLVVRYTP 114
S+ G + KA L Q+ +R +K R+ P
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
and beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 26.7 bits (60), Expect = 2.5
Identities = 6/18 (33%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Query: 18 VAAFAA-SEGHAHPRVVE 34
++A++A ++GH HP+++
Sbjct: 42 LSAYSAVNQGHRHPKIIN 59
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP:
c.67.1.4 PDB: 3lg0_A 3ntj_A
Length = 433
Score = 26.4 bits (59), Expect = 3.3
Identities = 5/18 (27%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 18 VAAFAA-SEGHAHPRVVE 34
++A+++ ++GH HP ++
Sbjct: 71 LSAYSSVNQGHCHPNILN 88
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine,
PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A
{Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A*
2byl_A* 1gbn_A* 2can_A*
Length = 439
Score = 26.1 bits (58), Expect = 4.4
Identities = 6/18 (33%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Query: 18 VAAFAA-SEGHAHPRVVE 34
+++++A ++GH HP++V
Sbjct: 82 LSSYSAVNQGHCHPKIVN 99
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 26.0 bits (58), Expect = 5.3
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 26 GHAHPRVVE 34
GH HP +V
Sbjct: 58 GHCHPEIVS 66
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2;
1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A*
1szk_A* 1szu_A* 1szs_A*
Length = 426
Score = 25.6 bits (57), Expect = 6.0
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 26 GHAHPRVVE 34
GH HP+VV
Sbjct: 56 GHLHPKVVA 64
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered
Se-Met, structural genomics, putative ribosomal protein,
PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1
PDB: 2q16_A* 2pyu_A*
Length = 221
Score = 25.6 bits (57), Expect = 6.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 115 KVLEEMEMRFDKQRTAR 131
K+LE M+ D QR AR
Sbjct: 123 KLLETMKDVPDDQRQAR 139
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 25.6 bits (57), Expect = 6.2
Identities = 4/9 (44%), Positives = 5/9 (55%)
Query: 26 GHAHPRVVE 34
G +HP V
Sbjct: 79 GASHPAVAA 87
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 25.6 bits (57), Expect = 6.3
Identities = 4/9 (44%), Positives = 6/9 (66%)
Query: 26 GHAHPRVVE 34
G+ HP +V
Sbjct: 58 GYGHPAIVA 66
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A*
3q8n_A
Length = 451
Score = 25.6 bits (57), Expect = 6.6
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 26 GHAHPRVVE 34
G++ P+VVE
Sbjct: 76 GNSAPKVVE 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.371
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,115,923
Number of extensions: 124573
Number of successful extensions: 699
Number of sequences better than 10.0: 1
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 236
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)