BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12580
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 110/146 (75%), Gaps = 2/146 (1%)
Query: 93 LSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPK 152
+++H GI L+ TK++ +G+ W+GRWQ NDIV K+L VR+ + R SRDFNEE P+
Sbjct: 1 MNKHSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPR 60
Query: 153 LRIFSHPNVLPVIGCVNSP--PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
LRIFSHPNVLPV+G SP P +I+ +M +GSLY +LHEG VVD +QA++FA+D+
Sbjct: 61 LRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDM 120
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
ARGMAFLH+LE +IP++ LNSR VM+
Sbjct: 121 ARGMAFLHTLEPLIPRHALNSRSVMI 146
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 105/145 (72%), Gaps = 2/145 (1%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKL 153
++H GI L+ TK++ +G+ W+GRWQ NDIV K+L VR+ + R SRDFNEE P+L
Sbjct: 2 NKHSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRL 61
Query: 154 RIFSHPNVLPVIGCVNSP--PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVA 211
RIFSHPNVLPV+G SP P +I+ + +GSLY +LHEG VVD +QA++FA+D A
Sbjct: 62 RIFSHPNVLPVLGACQSPPAPHPTLITHWXPYGSLYNVLHEGTNFVVDQSQAVKFALDXA 121
Query: 212 RGMAFLHSLERIIPQYQLNSRHVMV 236
RG AFLH+LE +IP++ LNSR V +
Sbjct: 122 RGXAFLHTLEPLIPRHALNSRSVXI 146
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
DDHGFSPLHWAC+EG +VE+L+ RGAR+N NRGDDTPLHLAA+HGH DIV+ L +Q
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL-LQY 94
Query: 68 NQDLTKIN 75
D+ +N
Sbjct: 95 KADINAVN 102
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
++ ++HG PLH+AC G ++ E L+ GA V+ N+ + P+ A A +++R
Sbjct: 98 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRER 156
Query: 64 AVQNNQDLTKINFKDQSWLG 83
A + Q+L +I +KD W G
Sbjct: 157 AEKMGQNLNRIPYKDTFWKG 176
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
DDHGFSPLHWAC+EG +VE+L+ RGAR+N NRGDDTPLHLAA+HGH DIV+ L +Q
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL-LQY 89
Query: 68 NQDLTKIN 75
D+ +N
Sbjct: 90 KADINAVN 97
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
++ ++HG PLH+AC G ++ E L+ GA V+ N+ + P+ A A +++R
Sbjct: 93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR-ELLRER 151
Query: 64 AVQNNQDLTKINFKDQSWLG 83
A + Q+L +I +KD W G
Sbjct: 152 AEKMGQNLNRIPYKDTFWKG 171
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
DL++ KI +G G R W +D+ KIL ++ +F E ++ HPN++
Sbjct: 38 DLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIV 97
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHE-GAGIVVDFAQALRFAVDVARGMAFLHSLE 221
+G V PP+L ++++Y++ GSLY LLH+ GA +D + L A DVA+GM +LH+
Sbjct: 98 LFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN 157
Query: 222 RIIPQYQLNSRHVMV 236
I L S +++V
Sbjct: 158 PPIVHRNLKSPNLLV 172
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
I DL++ KI +G G R W +D+ KIL ++ +F E ++ H
Sbjct: 34 IPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRH 93
Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE-GAGIVVDFAQALRFAVDVARGMAFL 217
PN++ +G V PP+L ++++Y++ GSLY LLH+ GA +D + L A DVA+GM +L
Sbjct: 94 PNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYL 153
Query: 218 HSLERIIPQYQLNSRHVMV 236
H+ I L S +++V
Sbjct: 154 HNRNPPIVHRDLKSPNLLV 172
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G +PLH A +GHL++VE+LL+ GA VNA ++ DTPLHLAA +GHL+IV +L
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 64 AVQNNQDLTKIN 75
++N D+ +
Sbjct: 100 -LKNGADVNATD 110
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A GHL++VE+LL+ GA VNAT+ TPLHLAA GHL+IV +L
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ TD +GF+PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G V +L+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVL 66
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 46/60 (76%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ TD+ G++PLH A GHL++VE+LL+ GA VNA++ TPLHLAAA GHL+IV +L
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ +D G +PLH A GHL++VE+LL+ GA VNA + TPLHLAA +GHL+IV +L
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVL 132
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D+ G +PLH A K GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL----AVQNNQDLTK 73
A + G V +L+ GA VNAT+ TPLHLAA++GHL+IV +L A N DLT
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 74 I 74
I
Sbjct: 81 I 81
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A +EGHL++VE+LL+ GA VNA ++ TPLHLAA GHL+IV +L
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A +EGHL++VE+LL+ GA VNA ++ TPLHLAA GHL+IV +L
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A +EGHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
L A + G V +L+ GA VNA ++ TPLHLAA GHL+IV +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 66
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A +EGHL++VE+LL+ GA VNA ++ TPLHLAA GHL+IV +L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A +EGHL++VE+LL+ GA VNA ++ TPLHLAA GHL+IV +L
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A +EGHL++VE+LL+ GA VNA ++ TP LA +G+ DI +L
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
L A + G V +L+ GA VNA ++ TPLHLAA GHL+IV +L
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 44/59 (74%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+V D G++PLH AC GHLK+VELLLQ A VN T +D+PLH AA +GH+DIV+LL
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
T+ G + LH A +G + VE LLQ G+ N + TPLH A HGHL +V LL
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATN 41
V+ T SPLH A K GH+ +V+LLL GA NA N
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A +EGHL++VE+LL+ GA VNA ++ TPLHLAA GHL+IV +L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A +EGHL++VE+LL+ GA VNA ++ TPLHLAA GHL+IV +L
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A +EGHL++VE+LL+ GA VNA ++ TP LA GH DI +L
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G V +L+ GA VNA ++ TPLHLAA GHL+IV +L
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ TDD+G +PLH A G L++VE+LL+ GA VNA++ TPLHLAA GHL+IV +L
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ +D G +PLH A +GHL++VE+LL+ GA VNA +R TPLHLAA G L+IV +L
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFK 77
A G V +L+ GA VNAT+ TPLHLAAA+G L+IV +L ++N D +N
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVL-LKNGAD---VNAS 68
Query: 78 DQSWL 82
D + +
Sbjct: 69 DSAGI 73
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A G L++VE+LL+ GA VNA + T ++ G D+ +L
Sbjct: 98 VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +G +PLH A + GHL++V+LLL+ GA VNA ++ TPLHLAA +GHL++V+LL
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 64 AVQNNQDLTKINFKDQSW 81
++ D +N KD++
Sbjct: 88 -LEAGAD---VNAKDKNG 101
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 46/60 (76%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +G +PLH A + GHL++V+LLL+ GA VNA ++ TPLHLAA +GHL++V+LL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 51/71 (71%), Gaps = 4/71 (5%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD 70
G +PLH A + GHL++V+LLL+ GA VNA ++ TPLHLAA +GHL++V+LL ++ D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL-LEAGAD 60
Query: 71 LTKINFKDQSW 81
+N KD++
Sbjct: 61 ---VNAKDKNG 68
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA 35
V+ D +G +PLH A + GHL++V+LLL+ GA
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G +PLH A K GHL++VE+LL+ GA VNA++ TPLHLAA GHL+IV +L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ +D G +PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G V +L+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL 66
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G +PLH A K GHL++VE+LL+ GA VNA++ TPLHLAA GHL+IV +L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ +D G +PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G V +L+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL 66
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 46/60 (76%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +G +PLH A + GHL++V+LLL+ GA VNA ++ TPLHLAA +GHL++V+LL
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 51/71 (71%), Gaps = 4/71 (5%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD 70
G +PLH A + GHL++V+LLL+ GA VNA ++ TPLHLAA +GHL++V+LL ++ D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL-LEAGAD 60
Query: 71 LTKINFKDQSW 81
+N KD++
Sbjct: 61 ---VNAKDKNG 68
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA 35
V+ D +G +PLH A + GHL++V+LLL+ GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ +D G +PLH+A KEGH ++V+LL+ +GA VNA + TPLH AA GH +IV+LL
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH+A KEGH ++V+LL+ +GA VNA + TPLH AA GH +IV+LL
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH+A KEGH ++V+LL+ +GA VN ++ TPL LA HG+ +IV+LL
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 64 AVQ 66
Q
Sbjct: 156 EKQ 158
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G+ V+ L++ GA VNA++ TPLH AA GH +IV+LL
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLL 56
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V D +GF+PLH A GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D+ G +PLH A GHL++VE+LL+ GA V+A + TPLHLAA GHL+IV +L
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL 99
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
V+ D G +PLH A EGHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +
Sbjct: 106 VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
L A + G V +L+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVL 66
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G +PLH A K GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
G +PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G V +L+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL 66
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%), Gaps = 4/76 (5%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A + GHL++VE+LL+ GA VNA++ TPLHLAA GHL+IV +L
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Query: 64 AVQNNQDLTKINFKDQ 79
++N D +N +D+
Sbjct: 133 -LKNGAD---VNAQDK 144
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 64 AVQNNQDLT 72
++N D+
Sbjct: 100 -LKNGADVN 107
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ +D HGF+PLH A K GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFK 77
A + G V +L+ GA VNA + TPLHLAA GHL+IV +L ++N D +N K
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVL-LKNGAD---VNAK 76
Query: 78 D 78
D
Sbjct: 77 D 77
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +G +PLH A + GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL 99
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A K GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKI 74
L A + G V +L+ GA VNA + DTPLHLAA GHL+IV +L ++N D+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVL-LKNGADVNAL 76
Query: 75 NFKDQSWLGLKTR 87
+F + L L +
Sbjct: 77 DFSGSTPLHLAAK 89
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ TD G +PLH A GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A GHL++VE+LL+ GA VNA + DTPLHLAA GHL+IV +L
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFK 77
A + G V +L+ GA VNAT+ TPLHLAA +GHL+IV +L +++ D+ I+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVL-LKHGADVNAIDIX 79
Query: 78 DQSWLGL 84
+ L L
Sbjct: 80 GSTPLHL 86
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ +D G++PLH A GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH GHL+++E+LL+ A VNA+++ TPLHLAA GHL+IV +L
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVL 99
Query: 64 AVQNNQDLTKINFKDQSWLGLKTRSRDATLS 94
++ D+ +++ Q + L + D L
Sbjct: 100 -LKYGADVNAMDY--QGYTPLHLAAEDGHLE 127
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A ++GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G V +L+ GA VNA + TPLHL +GHL+I+ +L
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVL 66
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D+ G +PLH A + GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVL 99
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D+ G +PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
L A + G V +L+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVL 66
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ TD G +PLH A GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A GHL++VE+LL+ GA VNA + DTPLHLAA GHL+IV +L
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINF 76
A + G V +L+ GA VNAT+ TPLHLAA +GHL+IV +L +++ D+ I+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVL-LKHGADVNAIDI 78
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL---- 63
D +G +PLH A GHL++VE+LL+ GA VNA + TPLHLAA+ GHL+IV +L
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
Query: 64 AVQNNQDLTKI 74
A N +D T I
Sbjct: 92 ADVNAKDATGI 102
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +G +PLH A GHL++VE+LL+ GA VNA + TPL+LAA GHL+IV +L
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PL+ A GHL++VE+LL+ GA VNA ++ T ++ G+ D+ +L
Sbjct: 94 VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN 75
A + G V +L+ GA NA + TPLH+AAA GHL+IV +L ++N D+ ++
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVL-LRNGADVNAVD 65
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ TD G +PLH A K GHL++VE+LL+ GA VNA + TPLHLAA +GHL+IV +L
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D++G +PLH A GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D GF+PLH A +GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G V +L+ GA VNAT+ TPLHLAA GHL+IV +L
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVL 66
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ +D G++PLH A GHL++VE+LL+ GA VNA + TPLHLAA GHL++V +L
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVL 99
Query: 64 AVQNNQDLT 72
++N D+
Sbjct: 100 -LKNGADVN 107
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +GF+PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT 72
A + G V +L+ GA VNA++ TPLHLAA GHL+IV +L ++N D+
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVL-LKNGADVN 74
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D+ G +PLH A GHL++VE+LL+ GA V+A++ TPLHLAA GHL+IV +L
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVL 99
Query: 64 AVQNNQDLTKINFKDQSWLGLKTR 87
++N D+ ++ + L L +
Sbjct: 100 -LKNGADVNAMDSDGMTPLHLAAK 122
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V +D G++PLH A GHL++VE+LL+ GA VNA + TPLHLAA G+L+IV +L
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A K G+L++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G V +L+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVL 66
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ +D G +PLH A + GH ++V+LLL +GA NA + TPLHLAA +GH ++V+LL
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
Query: 64 AVQ 66
Q
Sbjct: 90 LSQ 92
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
+ D G +PLH A + GH ++V+LLL +GA NA + TPLHLAA +GH ++V+LL
Sbjct: 64 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Query: 65 VQ 66
Q
Sbjct: 124 SQ 125
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
+ D G +PLH A + GH ++V+LLL +GA N ++ TPL LA HG+ ++V+LL
Sbjct: 97 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Query: 65 VQ 66
Q
Sbjct: 157 KQ 158
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
A + G+ V+ LL+ GA VNA++ TPLHLAA +GH ++V+LL Q
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ 59
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A HL++VE+LL+ GA VNA + +TPLHL A +GHL+IV +L
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKI 74
L A + G V +L+ GA VNA ++ TPLHLAA + HL+IV +L ++N D+ I
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVL-LKNGADVNAI 76
Query: 75 N 75
+
Sbjct: 77 D 77
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL 99
Query: 64 AVQNNQDLTKINFKDQSWL 82
++N D +N KD + +
Sbjct: 100 -LKNGAD---VNAKDDNGI 114
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD+G +PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT 72
A + G V +L+ GA VNA + TPLHLAA GHL+IV +L ++N D+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVL-LKNGADVN 74
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G +PLH A GH ++VE+LL+ GA VNA + TPLHLAA +GHL+IV +L
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +G +PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G V +L+ GA VNA + TPLHLAA GH +IV +L
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVL 66
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A GHL++VE+LL+ GA VNA + TPL LAA GHL+IV +L
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 64 AVQNNQDLTKINFKDQSWLGL 84
++N D+ + + + L L
Sbjct: 100 -LKNGADVNANDMEGHTPLHL 119
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PL A GHL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 64 AVQNNQDLTKINFKDQ 79
++N D +N +D+
Sbjct: 133 -LKNGAD---VNAQDK 144
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFK 77
A + G V +L+ GA VNA + TPLHLAA +GHL+IV +L ++N D+ ++
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVL-LKNGADVNAVDHA 79
Query: 78 DQSWLGLKT-----RSRDATLSRHKGISLNDLSLHTKI 110
+ L L + L ++ ND+ HT +
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D++G +PL+ A GHL++VE+LL+ GA VNA + TPLHLAA GHL+I +L
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D GF+PLH A GHL++ E+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKI 74
L A + G V +L+ GA VNA + TPL+LA AHGHL+IV +L ++N D+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL-LKNGADVNAV 76
Query: 75 N 75
+
Sbjct: 77 D 77
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+ +D G +PLH+A + GH ++V+LLL +GA NA + TPLH AA +GH +IV+LL
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 89
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+ D G +PLH+A + GH ++V+LLL +GA NA + TPLH AA +GH +IV+LL
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
+ D G +PLH+A + GH ++V+LLL +GA N ++ TPL LA HG+ +IV+LL
Sbjct: 97 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Query: 65 VQ 66
Q
Sbjct: 157 KQ 158
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G+ V+ LL+ GA NA++ TPLH AA +GH +IV+LL
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLL 56
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A HL++VE+LL+ GA VNA + TPLHLAA GHL+IV +L
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVL 99
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D+ G +PLH A GHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G V +L+ GA VNA +R +TPLHLAA + HL+IV +L
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVL 66
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
I +++ L T+I SG G ++G+W D+ KIL V + TP + F E LR H
Sbjct: 33 IEASEVMLSTRIGSGSFGTVYKGKWH-GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRH 91
Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
N+L +G + + +L +++Q+ SLY LH F Q + A A+GM +LH
Sbjct: 92 VNILLFMGYM-TKDNLAIVTQWCEGSSLYKHLHVQETKFQMF-QLIDIARQTAQGMDYLH 149
Query: 219 S 219
+
Sbjct: 150 A 150
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
G +PLH A K GH + V+ LL +GA VNA ++ +TPLHLAA +GH +IV+LL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ G +PLH A K GH ++V+LLL +GA VNA ++ +TP HLA +GH +IV+LL
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 64 AVQ 66
+
Sbjct: 95 DAK 97
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNA 39
V+ G +P H A K GH ++V+LL +GA VNA
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ +D G +PLH A + GH ++V+LL+ +GA VNA + TPLH AA +GH ++V+LL
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 89
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A + GH ++V+LL+ +GA VNA + TPLH AA +GH ++V+LL
Sbjct: 63 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A + GH ++V+LL+ +GA VN ++ TPL LA HG+ ++V+LL
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Query: 64 AVQ 66
Q
Sbjct: 156 EKQ 158
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
A + G+ V+ L++ GA VNA++ TPLH AA +GH ++V+LL
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLL 56
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
+++ +I SG G ++G+W D+ K+L V TP+ + F E LR H N+L
Sbjct: 26 ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 84
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+G ++ P L +++Q+ SLY LH + + + + A ARGM +LH+
Sbjct: 85 FMG-YSTKPQLAIVTQWCEGSSLYHHLH-ASETKFEMKKLIDIARQTARGMDYLHA 138
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
+++ +I SG G ++G+W D+ K+L V TP+ + F E LR H N+L
Sbjct: 14 ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 72
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+G ++ P L +++Q+ SLY LH + + + + A ARGM +LH+
Sbjct: 73 FMG-YSTKPQLAIVTQWCEGSSLYHHLH-ASETKFEMKKLIDIARQTARGMDYLHA 126
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An
Anti-Ige Inhibitor
Length = 135
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PLH A GHL++VE+LL+ GA VNAT TPLHLAA HL+IV +L
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVL 99
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ T + G +PLH A HL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT 72
A + G V +L GA VNA + TPLHLAA GHL+IV +L ++N D+
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVL-LKNGADVN 74
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
GF+PLH A K G +++ ELLL+R A NA + TPLH+A H +LDIV+LL
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V T G++PLH A G++KLV+ LLQ A VNA + +PLH AA GH DIV LL
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 64 AVQNNQDLTKINFKDQSWLGLKTR 87
++N +++ + L + R
Sbjct: 364 -LKNGASPNEVSSDGTTPLAIAKR 386
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD 70
+PLH A + GH ++ + LLQ A+VNA + D TPLH AA GH ++V+LL ++NN +
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL-LENNAN 105
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 12 FSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDL 71
+PLH A GHL +V+ LLQRGA N +N +TPLH+AA GH ++ + L Q+
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNK 70
Query: 72 TKINFK---DQSWLGLKTR 87
K+N K DQ+ L R
Sbjct: 71 AKVNAKAKDDQTPLHCAAR 89
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD 70
G +PLH +EGH+ + ++L++ G V+AT R TPLH+A+ +G++ +V+ L +Q+ D
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL-LQHQAD 336
Query: 71 L---TKINFKDQSWLGLKTRSRDATLSRHKGISLNDLS 105
+ TK+ + + + TL G S N++S
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
G +PLH A +EGH ++V LLL + A N N+ TPLHL A GH+ + +L
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
G++PLH A K+ +++ LLQ G NA + TPLHLAA GH ++V LL
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQ 69
G+SPLH A ++GH +V LLL+ GA N + TPL +A G++ + +L V ++
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIV-RLLAVQNNQD- 70
+PLH A + GH +V+LLL+ A N TPLH+AA GH++ V LL + +Q
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC 141
Query: 71 LTKINF 76
+TK F
Sbjct: 142 MTKKGF 147
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
G +PLH A +L +V+LLL RG ++ TPLH+AA +++ R L
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
+++ +I SG G ++G+W D+ K+L V TP+ + F E LR H N+L
Sbjct: 26 ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 84
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+G ++ P L +++Q+ SLY LH + + + + A ARGM +LH+
Sbjct: 85 FMG-YSTAPQLAIVTQWCEGSSLYHHLH-ASETKFEMKKLIDIARQTARGMDYLHA 138
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 83 GLKTRSRDATLSRHKG-----ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRN 137
G + R+R TL R I +++ +I SG G ++G+W D+ K+L V
Sbjct: 12 GSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTA 70
Query: 138 CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIV 197
TP+ + F E LR H N+L +G ++ P L +++Q+ SLY LH +
Sbjct: 71 PTPQQLQAFKNEVGVLRKTRHVNILLFMG-YSTKPQLAIVTQWCEGSSLYHHLH-----I 124
Query: 198 VDFAQALRFAVDVAR----GMAFLHS 219
++ + +D+AR GM +LH+
Sbjct: 125 IETKFEMIKLIDIARQTAQGMDYLHA 150
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
TD+ GF+PL WA G + +VE LLQ GA +G ++ L LA + G+ DIV++L
Sbjct: 48 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHG-HLDIVRLL 63
S L AC +G+ +V++LL G VN + TPL L A HG H+ V++L
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL-LYAVHGNHVKCVKML 137
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD 70
+H +G + + +++ +N T+ TPL AAAHG + +V L +QN D
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL-LQNGAD 77
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +G +PL +A H+K V++LL+ GA + LA A G+ + +++
Sbjct: 111 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 83 GLKTRSRDATLSRHKG-----ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRN 137
G + R+R TL R I +++ +I SG G ++G+W D+ K+L V
Sbjct: 12 GSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTA 70
Query: 138 CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIV 197
TP+ + F E LR H N+L +G ++ P L +++Q+ SLY LH +
Sbjct: 71 PTPQQLQAFKNEVGVLRKTRHVNILLFMG-YSTKPQLAIVTQWCEGSSLYHHLH-----I 124
Query: 198 VDFAQALRFAVDVAR----GMAFLHS 219
++ + +D+AR GM +LH+
Sbjct: 125 IETKFEMIKLIDIARQTAQGMDYLHA 150
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
TD+ GF+PL WA G + +VE LLQ GA +G ++ L LA + G+ DIV++L
Sbjct: 32 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHG-HLDIVRLL 63
S L AC +G+ +V++LL G VN + TPL L A HG H+ V++L
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL-LYAVHGNHVKCVKML 121
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD 70
+H +G + + +++ +N T+ TPL AAAHG + +V L +QN D
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL-LQNGAD 61
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +G +PL +A H+K V++LL+ GA + LA A G+ + +++
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
TD+ GF+PL WA G + +VE LLQ GA +G ++ L LA + G+ DIV++L
Sbjct: 30 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHG-HLDIVRLL 63
S L AC +G+ +V++LL G VN + TPL L A HG H+ V++L
Sbjct: 69 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL-LYAVHGNHVKCVKML 119
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD 70
+H +G + + +++ +N T+ TPL AAAHG + +V L +QN D
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL-LQNGAD 59
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +G +PL +A H+K V++LL+ GA + LA A G+ + +++
Sbjct: 93 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V D G PLH AC GH ++ ELL++ GA VN + TPLH AAA G +I +LL
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
Query: 64 AVQNNQDLTKINFKDQSWLGL 84
+Q+ D TK N + L L
Sbjct: 128 -LQHGADPTKKNRDGNTPLDL 147
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL----AVQNN 68
+PLH+A + +VE LLQ GA V+A ++G PLH A ++GH ++ LL AV N
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 69 QDLTKI 74
DL K
Sbjct: 104 ADLWKF 109
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+V D F+PLH A +G ++ +LLLQ GA NR +TPL L G DI LL
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 159
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V D G PLH AC GH ++ ELL++ GA VN + TPLH AAA G +I +LL
Sbjct: 70 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 129
Query: 64 AVQNNQDLTKINFKDQSWLGL 84
+Q+ D TK N + L L
Sbjct: 130 -LQHGADPTKKNRDGNTPLDL 149
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL----AVQNN 68
+PLH+A + +VE LLQ GA V+A ++G PLH A ++GH ++ LL AV N
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 69 QDLTKI 74
DL K
Sbjct: 106 ADLWKF 111
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+V D F+PLH A +G ++ +LLLQ GA NR +TPL L G DI LL
Sbjct: 103 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 161
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V D G PLH AC GH ++ ELL++ GA VN + TPLH AAA G +I +LL
Sbjct: 72 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 131
Query: 64 AVQNNQDLTKINFKDQSWLGL 84
+Q+ D TK N + L L
Sbjct: 132 -LQHGADPTKKNRDGNTPLDL 151
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL----AVQNN 68
+PLH+A + +VE LLQ GA V+A ++G PLH A ++GH ++ LL AV N
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 69 QDLTKI 74
DL K
Sbjct: 108 ADLWKF 113
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+V D F+PLH A +G ++ +LLLQ GA NR +TPL L G DI LL
Sbjct: 105 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 163
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 87 RSRDATLSRHKG-----ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR 141
R+R TL R I +++ +I SG G ++G+W D+ K+L V TP+
Sbjct: 8 RNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQ 66
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA 201
+ F E LR H N+L +G ++ P L +++Q+ SLY LH +++
Sbjct: 67 QLQAFKNEVGVLRKTRHVNILLFMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETK 120
Query: 202 QALRFAVDVAR----GMAFLHS 219
+ +D+AR GM +LH+
Sbjct: 121 FEMIKLIDIARQTAQGMDYLHA 142
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 16/142 (11%)
Query: 87 RSRDATLSRHKG-----ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR 141
R+R TL R I +++ +I SG G ++G+W D+ K+L V TP+
Sbjct: 15 RNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQ 73
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA 201
+ F E LR H N+L +G ++ P L +++Q+ SLY LH +++
Sbjct: 74 QLQAFKNEVGVLRKTRHVNILLFMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETK 127
Query: 202 QALRFAVDVAR----GMAFLHS 219
+ +D+AR GM +LH+
Sbjct: 128 FEMIKLIDIARQTAQGMDYLHA 149
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 15 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 73
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 74 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 130
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 26 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 84
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 85 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 141
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 15 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 73
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 74 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 130
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 14 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 72
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 73 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 129
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 15 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 73
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 74 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 130
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ ++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 72 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEK 129
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 72 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 128
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 18 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 76
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 77 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 133
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 18 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 76
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 77 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 133
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 75
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 76 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 132
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
I L + I G G + GRW ++ +++ + + F E R H
Sbjct: 30 IPFEQLEIGELIGKGRFGQVYHGRWH-GEVAIRLIDIERDNEDQLKAFKREVMAYRQTRH 88
Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
NV+ +G SPP L +I+ +LY+++ + A IV+D + + A ++ +GM +LH
Sbjct: 89 ENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRD-AKIVLDVNKTRQIAQEIVKGMGYLH 147
Query: 219 S 219
+
Sbjct: 148 A 148
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 18 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 76
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 77 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 133
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN++
Sbjct: 218 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLV 276
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 277 QLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 332
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V L A ++ M +L
Sbjct: 72 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 128
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 11 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 69
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V L A ++ M +L
Sbjct: 70 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 126
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V L A ++ M +L
Sbjct: 72 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 128
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G++PLH A +EGHL++VE+LL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
L A + G V +L+ GA VNA ++ TPLHLAA GHL+IV +L
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN++
Sbjct: 260 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLV 318
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
++G P +I+++M +G+L L E V+ L A ++ M +L
Sbjct: 319 QLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 374
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 18 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 76
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V L A ++ M +L
Sbjct: 77 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 133
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
TD + LHWAC GH ++VE LLQ G VN + +PLH+AA+ G +IV+ L V+
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G+SPLH A G ++V+ LL +GA VNA N+ TPLH AA+ +I +L
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
+V+ + +G +PLH+A + ++ +LL+ GA +A + D T +H AAA G+L +V +
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 63 L----AVQNNQD 70
L A N QD
Sbjct: 158 LLFYKASTNIQD 169
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLA 51
++ D G +PLH AC E ++ + L+ +GA + N+ + TPL +A
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
D + + +H A +G+LK+V +LL A N + +TPLHLA ++ + L Q
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 11 TDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 69
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I+++M +G+L L E V L A ++ M +L
Sbjct: 70 VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 126
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
+++ +I SG G ++G+W D+ K+L V TP+ + F E LR H N+L
Sbjct: 15 ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 73
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
+G ++ P L +++Q+ SLY LH +++ + +D+AR GM +LH+
Sbjct: 74 FMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 127
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
TD + LHWAC GH ++VE LLQ G VN + +PLH+AA+ G +IV+ L V+
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G+SPLH A G ++V+ LL +GA VNA N+ TPLH AA+ +I +L
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
+V+ + +G +PLH+A + ++ +LL+ GA +A + D T +H AAA G+L +V +
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 63 L----AVQNNQD 70
L A N QD
Sbjct: 158 LLFYKASTNIQD 169
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLA 51
++ D G +PLH AC E ++ + L+ +GA + N+ + TPL +A
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
D + + +H A +G+LK+V +LL A N + +TPLHLA ++ + L Q
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
+++ +I SG G ++G+W D+ K+L V TP+ + F E LR H N+L
Sbjct: 10 ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 68
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
+G ++ P L +++Q+ SLY LH +++ + +D+AR GM +LH+
Sbjct: 69 FMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 122
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
+++ +I SG G ++G+W D+ K+L V TP+ + F E LR H N+L
Sbjct: 15 ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 73
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
+G ++ P L +++Q+ SLY LH +++ + +D+AR GM +LH+
Sbjct: 74 FMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 127
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
+++ +I SG G ++G+W D+ K+L V TP+ + F E LR H N+L
Sbjct: 12 ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 70
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
+G ++ P L +++Q+ SLY LH +++ + +D+AR GM +LH+
Sbjct: 71 FMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 124
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
+++ +I SG G ++G+W D+ K+L V TP+ + F E LR H N+L
Sbjct: 10 ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 68
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
+G ++ P L +++Q+ SLY LH +++ + +D+AR GM +LH+
Sbjct: 69 FMG-YSTKPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 122
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN++
Sbjct: 221 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLV 279
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
++G P +I+++M +G+L L E V L A ++ M +L
Sbjct: 280 QLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 335
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLP 163
+++ +I SG G ++G+W D+ K+L V TP+ + F E LR H N+L
Sbjct: 10 ITVGQRIGSGSFGTVYKGKWH-GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 68
Query: 164 VIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR----GMAFLHS 219
+G ++ P L +++Q+ SLY LH +++ + +D+AR GM +LH+
Sbjct: 69 FMG-YSTAPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHA 122
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL-- 63
TD G SPLH A + GH E+LL+ G +A + D TPLH+AA+ GH +IV +L
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 64 --AVQNNQDLTKIN 75
A N +D+ K+
Sbjct: 89 HGADVNAKDMLKMT 102
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+PLH A EGH +VE+LL+ GA VNA + T LH A H H ++V LL
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D + LHWA + H ++VELL++ GA V+ ++ T ++ +G+ D+ +L
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L ++ +G G+ W G W N VA K L +P F EE ++
Sbjct: 6 IPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPE---SFLEEAQIMKKLK 62
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM GSL L +G G + + A VA GMA++
Sbjct: 63 HDKLVQLYAVVSEEP-IYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYI 121
Query: 218 HSLERI 223
+ I
Sbjct: 122 ERMNYI 127
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 18 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 76
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I ++M +G+L L E V+ L A ++ M +L
Sbjct: 77 VQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 133
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 14 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 72
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I ++M +G+L L E V+ L A ++ M +L
Sbjct: 73 VQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE 129
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
TD + LHWAC GH ++VE LLQ G VN + +PLH+AA+ G +IV+ L
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL 92
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G+SPLH A G ++V+ LL +GA+VNA N+ TPLH AA+ +I +L
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 1 MYY---VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLA 51
+YY ++ D G +PLH AC E ++ +LL+ +GA + N+ + TPL +A
Sbjct: 159 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ + +G +PLH+A + ++ +LL+ GA +A + + T +H AAA G+L ++ +L
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158
Query: 64 ----AVQNNQD 70
A N QD
Sbjct: 159 LYYKASTNIQD 169
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
D + + +H A +G+LK++ +LL A N + +TPLHLA ++ +LL Q
Sbjct: 136 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ 194
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 7 TDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
TD + LHWAC GH ++VE LLQ G VN + +PLH+AA+ G +IV+ L
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL 93
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G+SPLH A G ++V+ LL +GA+VNA N+ TPLH AA+ +I +L
Sbjct: 67 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 126
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 1 MYY---VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLA 51
+YY ++ D G +PLH AC E ++ +LL+ +GA + N+ + TPL +A
Sbjct: 160 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ + +G +PLH+A + ++ +LL+ GA +A + + T +H AAA G+L ++ +L
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159
Query: 64 ----AVQNNQD 70
A N QD
Sbjct: 160 LYYKASTNIQD 170
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
D + + +H A +G+LK++ +LL A N + +TPLHLA ++ +LL Q
Sbjct: 137 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ 195
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I ++M +G+L L E V L A ++ M +L
Sbjct: 72 VQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 128
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 71
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I ++M +G+L L E V L A ++ M +L
Sbjct: 72 VQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 128
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 32 TDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 90
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P ++++YM +G+L L E V L A ++ M +L
Sbjct: 91 VQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAMEYLE 147
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNV 161
D+++ K+ G G+ + G W+K + + ++ T V +F +E ++ HPN+
Sbjct: 11 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 69
Query: 162 LPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++G P +I ++M +G+L L E V L A ++ M +L
Sbjct: 70 VQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 126
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+VT G SPLH A G L+ LLL+ GA A N PLHLA GH +V+ L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 64 ----AVQNNQDLT 72
A N +DL+
Sbjct: 139 LDSNAKPNKKDLS 151
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
D G +PL +AC GH +LV LLLQ GA +NA+N +T LH A H+ +V LL
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL 204
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 14 PLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTK 73
PLH AC++GH ++V+ LL A+ N + +TPL A + GH ++V LL +Q+ +
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL-LQHGASINA 180
Query: 74 INFKDQSWL 82
N K + L
Sbjct: 181 SNNKGNTAL 189
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 34 GARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
G VN T++ +PLH+AA HG D++ LL
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLL 105
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
++ +++ G + LH A E H+ +VELLL GA V N+ T + A + I+ LL
Sbjct: 178 INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS--KIMELL 235
Query: 64 AV 65
V
Sbjct: 236 QV 237
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V D G PLH AC GH ++ ELLL+ GA VNA + TPLH AA+ +++ LL
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
Query: 64 AVQNNQDLTKINFKDQSWLGL 84
+ + D T +N +S + +
Sbjct: 144 -LSHGADPTLVNCHGKSAVDM 163
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+D +PLH A +++V+LLLQ GA V+A ++G PLH A ++GH ++ LL
Sbjct: 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 12 FSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+PLH A + H ++E+L + GA++NA + T LH AA GHL RLL
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 13 SPLHWACKEGHLK---LVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+ LH A H K + ELLL++GA VN N+ TPLH+AA H D++ +L
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 25 KLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL 82
KL+ LL +A++ TPLHLAA + + IV+LL +Q+ D ++ KD+ L
Sbjct: 39 KLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL-LQHGAD---VHAKDKGGL 92
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA 201
R F +E +R HPNVL IG + L I++Y+ G+L ++ + ++
Sbjct: 50 TQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGII-KSMDSQYPWS 108
Query: 202 QALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
Q + FA D+A GMA+LHS+ I LNS + +V
Sbjct: 109 QRVSFAKDIASGMAYLHSMNII--HRDLNSHNCLV 141
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L N +P F +E ++
Sbjct: 182 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGNMSPEA---FLQEAQVMKKLR 238
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ GSL L G + Q + A +A GMA++
Sbjct: 239 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 297
Query: 218 HSLERI 223
+ +
Sbjct: 298 ERMNYV 303
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G++P+ WA + H+ LV+LLL +G+ +N + ++ LH AA G +DI +L
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Query: 64 AVQNNQDLTKINFKDQSWLGLKTRSR--DAT---LSRHKGISLNDLSLHTKISSGP-NGD 117
+ DL +N S L + R D LSR ++L + T + N
Sbjct: 164 -LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222
Query: 118 TWRG 121
W
Sbjct: 223 VWSA 226
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
SPLH A + GH+ + +L+Q GA ++ + TPL AA + HL+ V+ L
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT 72
+PL A + HL+ V+ L++ GA V+ + T LHLAA GH ++V+ L D
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD-- 103
Query: 73 KINFKD 78
+N +D
Sbjct: 104 -VNCQD 108
>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3MTF|B Chain B, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3OOM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00507
pdb|3Q4U|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|B Chain B, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|C Chain C, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|D Chain D, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
Length = 301
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 20/125 (16%)
Query: 103 DLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS----- 157
D++L + G G+ WRG WQ ++ KI + SRD F + +++
Sbjct: 9 DITLLECVGKGRYGEVWRGSWQGENVAVKIFS--------SRDEKSWFRETELYNTVMLR 60
Query: 158 HPNVLPVIG----CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
H N+L I +S L +I+ Y GSLY L +D LR + +A G
Sbjct: 61 HENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASG 117
Query: 214 MAFLH 218
+A LH
Sbjct: 118 LAHLH 122
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +G +PLH A + GHL++V+LLL+ GA VNA ++ T ++ +G+ D+ +L
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 14 PLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
L A + G V +L+ GA V A ++ TPLHLAA +GHL++V+LL
Sbjct: 9 KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 58
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 237
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ GSL L G + Q + A +A GMA++
Sbjct: 238 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 296
Query: 218 HSLERI 223
+ +
Sbjct: 297 ERMNYV 302
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 237
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ GSL L G + Q + A +A GMA++
Sbjct: 238 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 296
Query: 218 HSLERI 223
+ +
Sbjct: 297 ERMNYV 302
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 5 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 61
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ GSL L G + Q + A +A GMA++
Sbjct: 62 HEKLVQLYAVVSEEP-IXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 120
Query: 218 HSL 220
+
Sbjct: 121 ERM 123
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 15 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ GSL L G + Q + A +A GMA++
Sbjct: 72 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
+
Sbjct: 131 ERM 133
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 8 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 64
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ GSL L G + Q + A +A GMA++
Sbjct: 65 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 123
Query: 218 HSL 220
+
Sbjct: 124 ERM 126
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 237
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++ +YM+ GSL L G + Q + A +A GMA++
Sbjct: 238 HEKLVQLYAVVSEEP-IYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 296
Query: 218 HSLERI 223
+ +
Sbjct: 297 ERMNYV 302
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 15 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ GSL L G + Q + A +A GMA++
Sbjct: 72 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
+
Sbjct: 131 ERM 133
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 264 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 320
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ GSL L G + Q + A +A GMA++
Sbjct: 321 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 379
Query: 218 HSLERI 223
+ +
Sbjct: 380 ERMNYV 385
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 6 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 62
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ GSL L G + Q + A +A GMA++
Sbjct: 63 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 121
Query: 218 HSL 220
+
Sbjct: 122 ERM 124
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 15 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKIR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ GSL L G + Q + A +A GMA++
Sbjct: 72 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
+
Sbjct: 131 ERM 133
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL-- 63
+T DH SPLH AC GHL V++LL+ GA+VN TPL A G D V LL
Sbjct: 88 ITADH-VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 146
Query: 64 ---AVQNNQDLT 72
+VQ DL
Sbjct: 147 HGASVQPESDLA 158
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 12 FSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+SP+H A GH + L+ +G VN +PLH A GHL V++L
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLH 49
H +PL+ AC+ V+ LL+ GA VN +G D+PLH
Sbjct: 189 HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLH 227
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT 72
SP+H A + GH++ V L+ G ++ TPL+LA + V+ L +++ D+
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL-LESGADVN 217
Query: 73 KINFKD 78
+ +D
Sbjct: 218 QGKGQD 223
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 15 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P +VI +YM+ GSL L G + Q + A +A GMA++
Sbjct: 72 HEKLVQLYAVVSEEPIYIVI-EYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
+
Sbjct: 131 ERM 133
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKND-----IVAKILAVRNCTPRVSRDFNEEFPKL 153
I N L L + G G G ++ D + K + + N + R +F E +
Sbjct: 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACM 90
Query: 154 RIFSHPNVLPVIG-CVNSP----PDLVVISQYMAWGSLYALL----HEGAGIVVDFAQAL 204
+ FSHPNV+ ++G C+ P +VI +M +G L+ L E + L
Sbjct: 91 KDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLL 150
Query: 205 RFAVDVARGMAFL 217
+F VD+A GM +L
Sbjct: 151 KFMVDIALGMEYL 163
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 15 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P +VI +YM+ GSL L G + Q + A +A GMA++
Sbjct: 72 HEKLVQLYAVVSEEPIYIVI-EYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
+
Sbjct: 131 ERM 133
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 4 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 60
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ GSL L G + Q + A +A GMA++
Sbjct: 61 HEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 119
Query: 218 HSL 220
+
Sbjct: 120 ERM 122
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL-- 63
+T DH SPLH AC GHL V++LL+ GA+VN TPL A G D V LL
Sbjct: 32 ITADH-VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 90
Query: 64 ---AVQNNQDLT 72
+VQ DL
Sbjct: 91 HGASVQPESDLA 102
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
H +PL+ AC+ V+ LL+ GA VN +G D+PLH A ++ LL
Sbjct: 133 HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLL 185
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 12 FSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+SP+H A GH + L+ +G VN +PLH A GHL V++L
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 55
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT 72
SP+H A + GH++ V L+ G ++ TPL+LA + V+ L +++ D+
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL-LESGADVN 161
Query: 73 KINFKD 78
+ +D
Sbjct: 162 QGKGQD 167
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89 RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
D T + H K + ++S+ + +G G+ GR + K +I I ++ T +
Sbjct: 29 EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
RDF E + F HPN++ + G V ++++++YM GSL + L H+ V+
Sbjct: 89 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
LR +A GM +L + + L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89 RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
D T + H K + ++S+ + +G G+ GR + K +I I ++ T +
Sbjct: 29 EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
RDF E + F HPN++ + G V ++++++YM GSL + L H+ V+
Sbjct: 89 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
LR +A GM +L + + L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89 RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
D T + H K + ++S+ + +G G+ GR + K +I I ++ T +
Sbjct: 27 EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 86
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
RDF E + F HPN++ + G V ++++++YM GSL + L H+ V+
Sbjct: 87 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 146
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
LR +A GM +L + + L +R++++
Sbjct: 147 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 178
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89 RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
D T + H K + ++S+ + +G G+ GR + K +I I ++ T +
Sbjct: 29 EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
RDF E + F HPN++ + G V ++++++YM GSL + L H+ V+
Sbjct: 89 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
LR +A GM +L + + L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89 RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
D T + H K + ++S+ + +G G+ GR + K +I I ++ T +
Sbjct: 29 EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
RDF E + F HPN++ + G V ++++++YM GSL + L H+ V+
Sbjct: 89 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
LR +A GM +L + + L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89 RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
D T + H K + ++S+ + +G G+ GR + K +I I ++ T +
Sbjct: 29 EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
RDF E + F HPN++ + G V ++++++YM GSL + L H+ V+
Sbjct: 89 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
LR +A GM +L + + L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 89 RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
D T + H K + ++S+ + +G G+ GR + K +I I ++ T +
Sbjct: 29 EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
RDF E + F HPN++ + G V ++++++YM GSL + L H+ V+
Sbjct: 89 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
LR +A GM +L + + L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPN 160
DL L +I G G+ + GR + ++ + + + R P + F +E L+ +SHPN
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN 173
Query: 161 VLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
++ +IG C P +V+ L L EGA + V L+ D A GM +L S
Sbjct: 174 IVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVK--TLLQMVGDAAAGMEYLES 231
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 15 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++ +YM+ GSL L G + Q + A +A GMA++
Sbjct: 72 HEKLVQLYAVVSEEP-IYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
+
Sbjct: 131 ERM 133
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNC-TPRVSRDFNEEFPKLRIFSHPN 160
DL L +I G G+ + GR + ++ + + + R P + F +E L+ +SHPN
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN 173
Query: 161 VLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
++ +IG C P +V+ L L EGA + V L+ D A GM +L S
Sbjct: 174 IVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVK--TLLQMVGDAAAGMEYLES 231
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 97 KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
K + ++S+ + +G G+ GR + K +I I ++ T + RDF E
Sbjct: 11 KELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASI 70
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDV 210
+ F HPN++ + G V ++++++YM GSL + L H+ V+ LR +
Sbjct: 71 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLR---GI 127
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
A GM +L + + L +R++++
Sbjct: 128 ASGMKYLSDMGYV--HRDLAARNILI 151
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 89 RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
R +T + H K + ++S+ + +G G+ GR + K +I I ++ T +
Sbjct: 17 RGSTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 76
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
RDF E + F HPN++ + G V ++++++YM GSL + L H+ V+
Sbjct: 77 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 136
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
LR +A GM +L + + L +R++++
Sbjct: 137 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 168
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 89 RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
D T + H K + ++S+ + +G G+ GR + K +I I ++ T +
Sbjct: 29 EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
RDF E + F HPN++ + G V ++++++YM GSL + L H+ V+
Sbjct: 89 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSL 220
LR +A GM +L +
Sbjct: 149 LVGMLR---GIASGMKYLSDM 166
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 11/152 (7%)
Query: 91 ATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDF 146
A S + I + + + I SG +G+ GR + + D+ I A++ T R RDF
Sbjct: 38 AGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDF 97
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQAL 204
E + F HPN++ + G V +++++YM GSL L H+G ++ L
Sbjct: 98 LSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGML 157
Query: 205 RFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
R V GM +L L + L +R+V+V
Sbjct: 158 R---GVGAGMRYLSDLGYV--HRDLAARNVLV 184
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 11/152 (7%)
Query: 91 ATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDF 146
A S + I + + + I SG +G+ GR + + D+ I A++ T R RDF
Sbjct: 38 AGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDF 97
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQAL 204
E + F HPN++ + G V +++++YM GSL L H+G ++ L
Sbjct: 98 LSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGML 157
Query: 205 RFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
R V GM +L L + L +R+V+V
Sbjct: 158 R---GVGAGMRYLSDLGYV--HRDLAARNVLV 184
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVE-LLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
V+ D G + L+WAC GH +VE L Q +N N+ DT LH AA G+ DIV+L
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 63 LAVQNNQ-DLTKINFK 77
L + + DL I K
Sbjct: 159 LLAKGARTDLRNIEKK 174
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%)
Query: 3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL 62
YV+ + +PLH A K G+L + L VN ++ T L+ A GH DIV
Sbjct: 65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEX 124
Query: 63 LAVQNNQDLTKIN 75
L Q N +L + N
Sbjct: 125 LFTQPNIELNQQN 137
>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
Length = 330
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 20/124 (16%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----H 158
++L + G G+ WRG WQ ++ KI + SRD F + +++ H
Sbjct: 39 ITLLECVGKGRYGEVWRGSWQGENVAVKIFS--------SRDEKSWFRETELYNTVMLRH 90
Query: 159 PNVLPVIG----CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
N+L I +S L +I+ Y GSLY L +D LR + +A G+
Sbjct: 91 ENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGL 147
Query: 215 AFLH 218
A LH
Sbjct: 148 AHLH 151
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
+V D G SP+H A + G L +++L++ GA VNA + P+HLA GH +V LA
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 65 VQNNQDLTKINFKDQSWL 82
+++ ++ +D S L
Sbjct: 130 PESD-----LHHRDASGL 142
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 30 LLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN 75
LL++GA N + +P+H AA G LD +++L V++ D+ ++
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVL-VEHGADVNALD 106
>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00135
Length = 301
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 20/124 (16%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----H 158
++L + G G+ WRG WQ ++ KI + SRD F + +++ H
Sbjct: 10 ITLLECVGKGRYGEVWRGSWQGENVAVKIFS--------SRDEKSWFRETELYNTVMLRH 61
Query: 159 PNVLPVIG----CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
N+L I +S L +I+ Y GSLY L +D LR + +A G+
Sbjct: 62 ENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGL 118
Query: 215 AFLH 218
A LH
Sbjct: 119 AHLH 122
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
+V D G SP+H A + G L +++L++ GA VNA + P+HLA GH +V LA
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 65 VQNNQDLTKINFKDQSWL 82
+++ ++ +D S L
Sbjct: 128 PESD-----LHHRDASGL 140
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 30 LLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKIN 75
LL++GA N + +P+H AA G LD +++L V++ D+ ++
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVL-VEHGADVNALD 104
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 15 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM+ G L L G + Q + A +A GMA++
Sbjct: 72 HEKLVQLYAVVSEEP-IYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
+
Sbjct: 131 ERM 133
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 97 KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
K I + + + I G G+ GR + K +I I ++ T + RDF E
Sbjct: 3 KEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASI 62
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDV 210
+ F HPN++ + G V +++I++YM GSL A L + G V+ LR +
Sbjct: 63 MGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR---GI 119
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
GM +L + + L +R+++V
Sbjct: 120 GSGMKYLSDMSYV--HRDLAARNILV 143
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 97 KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
K I + + + I G G+ GR + K +I I ++ T + RDF E
Sbjct: 9 KEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASI 68
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDV 210
+ F HPN++ + G V +++I++YM GSL A L + G V+ LR +
Sbjct: 69 MGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR---GI 125
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
GM +L + + L +R+++V
Sbjct: 126 GSGMKYLSDMSYV--HRDLAARNILV 149
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 96 HKGISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLR 154
H + +++L ++ SG G G+W+ + D+ K++ + + +F +E +
Sbjct: 2 HMELKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS---EDEFFQEAQTMM 58
Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE-GAGIVVDFAQALRFAVDVARG 213
SHP ++ G + + ++++Y++ G L L G G+ + +Q L DV G
Sbjct: 59 KLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGL--EPSQLLEMCYDVCEG 116
Query: 214 MAFLHSLERI 223
MAFL S + I
Sbjct: 117 MAFLESHQFI 126
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 97 KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
K I + + + I G G+ GR + K +I I ++ T + RDF E
Sbjct: 24 KEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASI 83
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDV 210
+ F HPN++ + G V +++I++YM GSL A L + G V+ LR +
Sbjct: 84 MGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLR---GI 140
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
GM +L + + L +R+++V
Sbjct: 141 GSGMKYLSDMSAV--HRDLAARNILV 164
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Query: 2 YYVS-------VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAH 54
YY+S + D +PLHWA ++GHL +V L++ GA + + + +HLAA
Sbjct: 60 YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF 119
Query: 55 GHLDIVRLLAVQNNQDLTKINFKDQS------WLGLKTRSRDAT 92
GH IV L + QD ++ DQ+ W +T S D T
Sbjct: 120 GHTSIVAYL-IAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPT 159
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGD--DTPLHLAAAHGHLDI 59
Y V D + LHWA + LV+ + +GA V+ GD TPLH A GHL +
Sbjct: 33 YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG-GDLNSTPLHWATRQGHLSM 91
Query: 60 V 60
V
Sbjct: 92 V 92
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 10 HGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLA 51
H + LHWA G+ ++ LLL+ GA V+A N ++ L LA
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 12 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 68
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM GSL L G + Q + + +A GMA++
Sbjct: 69 HEKLVQLYAVVSEEP-IYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYV 127
Query: 218 HSL 220
+
Sbjct: 128 ERM 130
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
I ++ + + G G + +W+ D+ K + + + F E +L +H
Sbjct: 5 IDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESES----ERKAFIVELRQLSRVNH 60
Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF--AQALRFAVDVARGMAF 216
PN++ + G +P + ++ +Y GSLY +LH GA + + A A+ + + ++G+A+
Sbjct: 61 PNIVKLYGACLNP--VCLVMEYAEGGSLYNVLH-GAEPLPYYTAAHAMSWCLQCSQGVAY 117
Query: 217 LHSLE 221
LHS++
Sbjct: 118 LHSMQ 122
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 91 ATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNC----TPRVSRDF 146
++ K I ++ + + I +G G+ RGR + +A++ T R R+F
Sbjct: 3 GSMEFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREF 62
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL--YALLHEGAGIVVDFAQAL 204
E + F HPN++ + G V + +++++++M G+L + L++G V+ L
Sbjct: 63 LSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGML 122
Query: 205 RFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
R +A GM +L + + L +R+++V
Sbjct: 123 R---GIASGMRYLAEMSYV--HRDLAARNILV 149
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 11/146 (7%)
Query: 97 KGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNC----TPRVSRDFNEEFPK 152
K I ++ + + I +G G+ RGR + +A++ T R R+F E
Sbjct: 11 KEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASI 70
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL--YALLHEGAGIVVDFAQALRFAVDV 210
+ F HPN++ + G V + +++++++M G+L + L++G V+ LR +
Sbjct: 71 MGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLR---GI 127
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
A GM +L + + L +R+++V
Sbjct: 128 ASGMRYLAEMSYV--HRDLAARNILV 151
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D +G +PLH A + GHL++V+LLL+ GA V A ++ T ++ +G+ D+ +L
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 15 LHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
L A + G V +L+ GA V A ++ TPLHLAA +GHL++V+LL
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 76
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 12 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 68
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++++YM GSL L G + Q + + +A GMA++
Sbjct: 69 HEKLVQLYAVVSEEP-IYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYV 127
Query: 218 HSL 220
+
Sbjct: 128 ERM 130
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
I ++ + + G G + +W+ D+ K + + + F E +L +H
Sbjct: 6 IDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESES----ERKAFIVELRQLSRVNH 61
Query: 159 PNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF--AQALRFAVDVARGMAF 216
PN++ + G +P + ++ +Y GSLY +LH GA + + A A+ + + ++G+A+
Sbjct: 62 PNIVKLYGACLNP--VCLVMEYAEGGSLYNVLH-GAEPLPYYTAAHAMSWCLQCSQGVAY 118
Query: 217 LHSLE 221
LHS++
Sbjct: 119 LHSMQ 123
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex
With V-1
Length = 123
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ T + G PLH+A G L+++E LL +GA +NA ++ TPL A GH+ V+LL
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 17 WACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
WA K G L V+ + +G VN T G PLH AA G L+I+ L ++
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD 45
++ D H +PL A EGH+ V+LLL +GA + T +G D
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGA--DKTVKGPD 105
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 97 KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVRNC-TPRVSRDFNEEFPK 152
K I ++ + + I +G G+ G + K +I I +++ T + RDF E
Sbjct: 28 KEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASI 87
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDV 210
+ F HPNV+ + G V +++I+++M GSL + L + G V+ LR +
Sbjct: 88 MGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLR---GI 144
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
A GM +L + + L +R+++V
Sbjct: 145 AAGMKYLADMNYV--HRDLAARNILV 168
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
+V D G SP+H A + G L +++L++ GA VN + P+HLA GH +V LA
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 65 VQNN 68
+++
Sbjct: 128 AESD 131
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+V D G P+H A +EGH +V L RG TPL LA G D+V +L
Sbjct: 100 VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARG-LTPLELALQRGAQDLVDIL 158
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ T + G PLH+A G L+++E LL +GA +NA ++ TPL A GH+ V+LL
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 87
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 17 WACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
WA K G L V+ + +G VN T G PLH AA G L+I+ L ++
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 58
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD 45
++ D H +PL A EGH+ V+LLL +GA + T +G D
Sbjct: 61 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGA--DKTVKGPD 100
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
+V D G SP+H A + G L +++L++ GA VN + P+HLA GH +V LA
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 65 VQNN 68
+++
Sbjct: 122 AESD 125
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+V D G P+H A +EGH +V L RG TPL LA G D+V +L
Sbjct: 94 VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARG-LTPLELALQRGAQDLVDIL 152
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 97 KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVRNC-TPRVSRDFNEEFPK 152
K I ++ + + I +G G+ G + K +I I +++ T + RDF E
Sbjct: 2 KEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASI 61
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDV 210
+ F HPNV+ + G V +++I+++M GSL + L + G V+ LR +
Sbjct: 62 MGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLR---GI 118
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
A GM +L + + L +R+++V
Sbjct: 119 AAGMKYLADMNYV--HRALAARNILV 142
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFS 157
I L L K+ G G+ W G W VA K L +P F +E ++
Sbjct: 15 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEA---FLQEAQVMKKLR 71
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + V+ P + ++ +YM+ G L L G + Q + A +A GMA++
Sbjct: 72 HEKLVQLYAVVSEEP-IYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 218 HSL 220
+
Sbjct: 131 ERM 133
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS--RDFNEEFPKLRIF 156
I + L K+ +G G+ W G + + VA V+ P + F EE ++
Sbjct: 9 IPRESIKLVKKLGAGQFGEVWMGYYNNSTKVA----VKTLKPGTMSVQAFLEEANLMKTL 64
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
H ++ + V + +I+++MA GSL L G V + + F+ +A GMA+
Sbjct: 65 QHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAY 124
Query: 217 LH 218
+
Sbjct: 125 IE 126
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
S+ +D G + LH A GH ++V+ L+Q G VNA + TPLH AA+ ++ + + L
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
S+ +D G + LH A GH ++V+ L+Q G VNA + TPLH AA+ ++ + + L
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS--RDFNEEFPKLRIF 156
I + L ++ +G G+ W G + + VA V+ P + F EE ++
Sbjct: 10 IPRESIKLVKRLGAGQFGEVWMGYYNNSTKVA----VKTLKPGTMSVQAFLEEANLMKTL 65
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
H ++ + V + +I++YMA GSL L G V + + F+ +A GMA+
Sbjct: 66 QHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAY 125
Query: 217 LH 218
+
Sbjct: 126 IE 127
>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|B Chain B, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|C Chain C, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|D Chain D, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|E Chain E, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|F Chain F, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|G Chain G, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|H Chain H, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|I Chain I, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|J Chain J, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|K Chain K, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|L Chain L, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|M Chain M, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|N Chain N, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|O Chain O, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|P Chain P, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|Q Chain Q, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|R Chain R, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|S Chain S, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|T Chain T, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|U Chain U, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|V Chain V, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|W Chain W, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|X Chain X, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
Length = 305
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 20/118 (16%)
Query: 110 ISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----HPNVLPV 164
+ G G+ WRG W + KI + SRD F + I++ H N+L
Sbjct: 16 VGKGRYGEVWRGLWHGESVAVKIFS--------SRDEQSWFRETEIYNTVLLRHDNILGF 67
Query: 165 IG----CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
I NS L +I+ Y GSLY L ++ ALR AV A G+A LH
Sbjct: 68 IASDMTSRNSSTQLWLITHYHEHGSLYDFLQRQ---TLEPHLALRLAVSAACGLAHLH 122
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 89 RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
D T + H K + ++S+ + +G G+ GR + K +I I ++ T +
Sbjct: 29 EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
RDF E + F HPN++ + G V ++++++ M GSL + L H+ V+
Sbjct: 89 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
LR +A GM +L + + L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGAV--HRDLAARNILI 180
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 89 RDATLSRH---KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPR 141
D T + H K + ++S+ + +G G+ GR + K +I I ++ T +
Sbjct: 29 EDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEK 88
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVD 199
RDF E + F HPN++ + G V ++++++ M GSL + L H+ V+
Sbjct: 89 QRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQ 148
Query: 200 FAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
LR +A GM +L + + L +R++++
Sbjct: 149 LVGMLR---GIASGMKYLSDMGYV--HRDLAARNILI 180
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 97 KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
K + + + + I +G G+ GR + K D+ I ++ T + RDF E
Sbjct: 38 KELDASCIKIERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASI 97
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDV 210
+ F HPNV+ + G V ++++ ++M G+L A L H+G V+ LR +
Sbjct: 98 MGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLR---GI 154
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
A GM +L + + L +R+++V
Sbjct: 155 AAGMRYLADMGYV--HRDLAARNILV 178
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
I DL L K+ G G RG W +AV+ P V DF E
Sbjct: 9 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 68
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
+ H N++ + G V +PP + ++++ GSL L + G + R+AV VA
Sbjct: 69 MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 126
Query: 213 GMAFLHS 219
GM +L S
Sbjct: 127 GMGYLES 133
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
I DL L K+ G G RG W +AV+ P V DF E
Sbjct: 5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
+ H N++ + G V +PP + ++++ GSL L + G + R+AV VA
Sbjct: 65 MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 122
Query: 213 GMAFLHS 219
GM +L S
Sbjct: 123 GMGYLES 129
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
I DL L K+ G G RG W +AV+ P V DF E
Sbjct: 5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
+ H N++ + G V +PP + ++++ GSL L + G + R+AV VA
Sbjct: 65 MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 122
Query: 213 GMAFLHS 219
GM +L S
Sbjct: 123 GMGYLES 129
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 97 KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
K + ++S+ + +G G+ GR + K +I I ++ T + RDF E
Sbjct: 11 KELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASI 70
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDV 210
+ F HPN++ + G V ++++++ M GSL + L H+ V+ LR +
Sbjct: 71 MGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLR---GI 127
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
A GM +L + + L +R++++
Sbjct: 128 ASGMKYLSDMGYV--HRDLAARNILI 151
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
I DL L K+ G G RG W +AV+ P V DF E
Sbjct: 15 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 74
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
+ H N++ + G V +PP + ++++ GSL L + G + R+AV VA
Sbjct: 75 MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 132
Query: 213 GMAFLHS 219
GM +L S
Sbjct: 133 GMGYLES 139
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
I DL L K+ G G RG W +AV+ P V DF E
Sbjct: 15 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 74
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
+ H N++ + G V +PP + ++++ GSL L + G + R+AV VA
Sbjct: 75 MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 132
Query: 213 GMAFLHS 219
GM +L S
Sbjct: 133 GMGYLES 139
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
I DL L K+ G G RG W +AV+ P V DF E
Sbjct: 5 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
+ H N++ + G V +PP + ++++ GSL L + G + R+AV VA
Sbjct: 65 MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 122
Query: 213 GMAFLHS 219
GM +L S
Sbjct: 123 GMGYLES 129
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 126 NDIVAKILAVR----NCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD--LVVISQ 179
ND +++AV+ +C P+ + +E LR H +++ GC + L ++ +
Sbjct: 39 NDGTGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVME 98
Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
Y+ GSL L + + AQ L FA + GMA+LHS I L +R+V++
Sbjct: 99 YVPLGSLRDYLPRHS---IGLAQLLLFAQQICEGMAYLHSQHYI--HRNLAARNVLL 150
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV------SRDFNEEFPK 152
I DL L K+ G G RG W +AV+ P V DF E
Sbjct: 9 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 68
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVAR 212
+ H N++ + G V +PP + ++++ GSL L + G + R+AV VA
Sbjct: 69 MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFL-LGTLSRYAVQVAE 126
Query: 213 GMAFLHS 219
GM +L S
Sbjct: 127 GMGYLES 133
>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3-
Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine
pdb|2WOU|A Chain A, Alk5 In Complex With
4-((4-((2,6-Dimethyl-3-Pyridyl)oxy)-2-
Pyridyl)amino)benzenesulfonamide
Length = 306
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 98 GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
G + L I G G+ WRG+W+ ++ KI + R S E + +
Sbjct: 2 GTIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLR 58
Query: 158 HPNVLPVIGCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
H N+L I N L ++S Y GSL+ L+ V ++ A+ A G
Sbjct: 59 HENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASG 115
Query: 214 MAFLH 218
+A LH
Sbjct: 116 LAHLH 120
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
I ++L+ +I SG G G W D VA I +R DF EE + SH
Sbjct: 5 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVA-IKTIRE-GAMSEEDFIEEAEVMMKLSH 62
Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
P ++ + G C+ P + +++++M G L L G+ L +DV GMA+L
Sbjct: 63 PKLVQLYGVCLEQAP-ICLVTEFMEHGCLSDYLRTQRGLFAA-ETLLGMCLDVCEGMAYL 120
Query: 218 HSLERIIPQYQLNSRHVMV 236
E + L +R+ +V
Sbjct: 121 E--EACVIHRDLAARNCLV 137
>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With
Inhibitor
Length = 326
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVI 165
L I G G+ WRG+W+ ++ KI + R S E + + H N+L I
Sbjct: 33 LQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFI 89
Query: 166 GCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
N L ++S Y GSL+ L+ V ++ A+ A G+A LH
Sbjct: 90 AADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLH 143
>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542
Length = 309
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVI 165
L I G G+ WRG+W+ ++ KI + R S E + + H N+L I
Sbjct: 13 LQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFI 69
Query: 166 GCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
N L ++S Y GSL+ L+ V ++ A+ A G+A LH
Sbjct: 70 AADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLH 123
>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp
Site Inhibitor
Length = 301
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVI 165
L I G G+ WRG+W+ ++ KI + R S E + + H N+L I
Sbjct: 8 LQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFI 64
Query: 166 GCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
N L ++S Y GSL+ L+ V ++ A+ A G+A LH
Sbjct: 65 AADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLH 118
>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human
Tgf- Beta Type I Receptor
pdb|3GXL|A Chain A, Alk-5 Kinase Complex With Gw857175
pdb|3HMM|A Chain A, Structure Of Alk5 + Gw855857
Length = 303
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 20/122 (16%)
Query: 106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS-----HPN 160
L I G G+ WRG+W+ ++ KI + SR+ F + I+ H N
Sbjct: 7 LQESIGKGRFGEVWRGKWRGEEVAVKIFS--------SREERSWFREAEIYQTVMLRHEN 58
Query: 161 VLPVIGCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
+L I N L ++S Y GSL+ L+ V ++ A+ A G+A
Sbjct: 59 ILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAH 115
Query: 217 LH 218
LH
Sbjct: 116 LH 117
>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|3FAA|A Chain A, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|B Chain B, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|C Chain C, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|D Chain D, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|E Chain E, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3KCF|A Chain A, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|B Chain B, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|C Chain C, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|D Chain D, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|E Chain E, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|2X7O|A Chain A, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|B Chain B, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|C Chain C, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|D Chain D, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|E Chain E, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
Length = 342
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 106 LHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRD-FNE-EFPKLRIFSHPNVLP 163
L I G G+ WRG+W+ ++ KI + R R F E E + + H N+L
Sbjct: 46 LQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE-----ERSWFREAEIYQTVMLRHENILG 100
Query: 164 VIGCVNSP----PDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
I N L ++S Y GSL+ L+ V ++ A+ A G+A LH
Sbjct: 101 FIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLH 156
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+ D GF+ +H A + G L ++ LL+ A VN + + PLHLAA GHL +V L
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRL 62
V++ D+ G PLH A KEGHL++VE L++ A V N DT LA +G ++V L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 63 L 63
+
Sbjct: 156 M 156
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
G + LH AC + ++ +V+ L++ GA +N + PLH AA+ G+LDI L Q
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHL 50
++ D+ G+ PLH A G+L + E L+ +GA V A N DTPL +
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD 70
G + LH A +G+ ++++LL+Q VN + TPLH AA G + R+L V+N D
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL-VENLCD 257
Query: 71 LTKINFKDQS 80
+ +N Q+
Sbjct: 258 MEAVNKVGQT 267
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 18 ACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFK 77
AC G + V LL+RGA +N N T LH A ++D+V+ L V+N ++ + +
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFL-VENGANINQPD-- 103
Query: 78 DQSWLGL 84
++ W+ L
Sbjct: 104 NEGWIPL 110
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 82 LGLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR 141
+G ++D +++ +L L I G GD G ++ N + K +
Sbjct: 1 MGGSVAAQDEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIK----NDA 56
Query: 142 VSRDFNEEFPKLRIFSHPNVLPVIGC-VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
++ F E + H N++ ++G V L ++++YMA GSL L V+
Sbjct: 57 TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGG 116
Query: 201 AQALRFAVDVARGMAFLH 218
L+F++DV M +L
Sbjct: 117 DCLLKFSLDVCEAMEYLE 134
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 10 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 66
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 67 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 122
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTP--RVSRDFNEEFPKLRIF 156
I L L K+ +G G+ W + K+ VA V+ P F E ++
Sbjct: 179 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVA----VKTMKPGSMSVEAFLAEANVMKTL 234
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
H ++ + V P + +I+++MA GSL L G + + F+ +A GMAF
Sbjct: 235 QHDKLVKLHAVVTKEP-IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 293
Query: 217 LH 218
+
Sbjct: 294 IE 295
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 98 GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
+++ +L L I G GD G ++ N + K + ++ F E +
Sbjct: 2 ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIK----NDATAQAFLAEASVMTQLR 57
Query: 158 HPNVLPVIGC-VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
H N++ ++G V L ++++YMA GSL L V+ L+F++DV M +
Sbjct: 58 HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 117
Query: 217 LH 218
L
Sbjct: 118 LE 119
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGAR------VNATNRGDDTPLHLAAAHGHLDIVR 61
D G +PLH AC++G L V +L Q + ATN T LHLA+ HG+L IV
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 62 LL 63
LL
Sbjct: 135 LL 136
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD-TPLHLAAAHGHLDIVRL 62
+ T+ +G + LH A G+L +VELL+ GA VNA + T LHLA + D+V L
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 63 LAVQNNQDLTKINFKDQS 80
L ++ D+ ++ ++ S
Sbjct: 170 L-LKCGADVNRVTYQGYS 186
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
+PLH A ++ E LL G + +TPLHLA G L V +L
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 98
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
D+ G +P+ A +EG +++V L+Q+GA V A + D T LA A+ H +IV +
Sbjct: 310 DEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 11 GFSPLHWACKEGHLKLVELLL-QRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
G + LH+A + + +V+ L+ ++G+ + + TP+ LAA G +++V L Q
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQ 335
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTP--RVSRDFNEEFPKLRIF 156
I L L K+ +G G+ W + K+ VA V+ P F E ++
Sbjct: 185 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVA----VKTMKPGSMSVEAFLAEANVMKTL 240
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
H ++ + V P + +I+++MA GSL L G + + F+ +A GMAF
Sbjct: 241 QHDKLVKLHAVVTKEP-IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 299
Query: 217 LH 218
+
Sbjct: 300 IE 301
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRL 62
V++ D+ G PLH A KEGHL++VE L++ A V N DT LA +G ++V L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 63 L 63
+
Sbjct: 156 M 156
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAV 65
+ D GF+ +H A + G L ++ LL+ A VN + + PLHLAA GHL +V L
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 66 QNNQDLTKINFKDQS 80
++ N K +
Sbjct: 125 HTASNVGHRNHKGDT 139
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRL 62
V++ D+ G PLH A KEGHL++VE L++ A V N DT LA +G ++V L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 63 L 63
+
Sbjct: 156 M 156
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+ D GF+ +H A + G L ++ LL+ A VN + + PLHLAA GHL +V L
Sbjct: 65 LKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRL 62
V++ D+ G PLH A KEGHL++VE L++ A V N DT LA +G ++V L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 63 L 63
+
Sbjct: 156 M 156
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+ D G + +H A + G L ++ LL+ A VN + + PLHLAA GHL +V L
Sbjct: 65 LKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 11 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 67
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 68 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 123
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGDDTPLHLAAAHGHLDIVRL 62
V++ D+ G PLH A KEGHL++VE L++ A V N DT LA +G ++V L
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 63 L 63
+
Sbjct: 156 M 156
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 6 VTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAV 65
+ D GF+ +H A + G L ++ LL+ A VN + + PLHLAA GHL +V L
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 66 QNNQDLTKINFKDQS 80
++ N K +
Sbjct: 125 HTASNVGHRNHKGDT 139
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 126 NDIVAKILAVR----NCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPD--LVVISQ 179
ND +++AV+ +C P+ + +E LR H +++ GC + L ++ +
Sbjct: 39 NDGTGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVME 98
Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
Y+ GSL L + + AQ L FA + GMA+LH+ I L +R+V++
Sbjct: 99 YVPLGSLRDYLPRHS---IGLAQLLLFAQQICEGMAYLHAQHYI--HRNLAARNVLL 150
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 15 LKLVERLGAGQAGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 71
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 72 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGAR------VNATNRGDDTPLHLAAAHGHLDIVR 61
D G +PLH AC++G L V +L Q + ATN T LHLA+ HG+L IV
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 131
Query: 62 LL 63
LL
Sbjct: 132 LL 133
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD-TPLHLAAAHGHLDIVRL 62
+ T+ +G + LH A G+L +VELL+ GA VNA + T LHLA + D+V L
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 63 LAVQNNQDLTKINFKDQS 80
L ++ D+ ++ ++ S
Sbjct: 167 L-LKCGADVNRVTYQGYS 183
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
+PLH A ++ E LL G + +TPLHLA G L V +L
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 95
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 97 KGISLNDLSLHTKISSGPNGDTWRGRWQ---KNDIVAKILAVR-NCTPRVSRDFNEEFPK 152
K I + +++ I +G G+ GR + K ++ I ++ T + RDF E
Sbjct: 17 KEIEASCITIERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASI 76
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL--HEGAGIVVDFAQALRFAVDV 210
+ F HPN++ + G V ++++++YM GSL L ++G V+ LR +
Sbjct: 77 MGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLR---GI 133
Query: 211 ARGMAFLHSLERIIPQYQLNSRHVMV 236
+ GM +L + + L +R++++
Sbjct: 134 SAGMKYLSDMGYV--HRDLAARNILI 157
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 98 GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
+++ +L L I G GD G ++ N + K + ++ F E +
Sbjct: 189 ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIK----NDATAQAFLAEASVMTQLR 244
Query: 158 HPNVLPVIGC-VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
H N++ ++G V L ++++YMA GSL L V+ L+F++DV M +
Sbjct: 245 HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 304
Query: 217 LH 218
L
Sbjct: 305 LE 306
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 16 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 72
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 73 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 128
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 20 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 76
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 77 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 132
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 15 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 71
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 72 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 21 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 77
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 78 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 133
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
+++ +L L I G GD G ++ N + K + ++ F E + H
Sbjct: 9 LNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIK----NDATAQAFLAEASVMTQLRH 64
Query: 159 PNVLPVIGC-VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
N++ ++G V L ++++YMA GSL L V+ L+F++DV M +L
Sbjct: 65 SNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL 124
Query: 218 HS 219
Sbjct: 125 EG 126
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 126 NDIVAKILAVR----NCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV--ISQ 179
ND +++AV+ C P++ + E LR H +++ GC + V + +
Sbjct: 33 NDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVME 92
Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
Y+ GSL L V AQ L FA + GMA+LH+
Sbjct: 93 YVPLGSLRDYLPRHC---VGLAQLLLFAQQICEGMAYLHA 129
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 15 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 71
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 72 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 126 NDIVAKILAVR----NCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVV--ISQ 179
ND +++AV+ C P++ + E LR H +++ GC + V + +
Sbjct: 34 NDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVME 93
Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
Y+ GSL L V AQ L FA + GMA+LH+
Sbjct: 94 YVPLGSLRDYLPRHC---VGLAQLLLFAQQICEGMAYLHA 130
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTP--RVSRDFNEEFPKLRIF 156
I L L K+ +G G+ W + K+ VA V+ P F E ++
Sbjct: 12 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVA----VKTMKPGSMSVEAFLAEANVMKTL 67
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
H ++ + V P + +I+++MA GSL L G + + F+ +A GMAF
Sbjct: 68 QHDKLVKLHAVVTKEP-IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF 126
Query: 217 LH 218
+
Sbjct: 127 IE 128
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 21 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 77
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 78 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 133
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 25 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 81
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 82 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 137
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 17 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 73
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 74 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 129
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 15 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 71
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 72 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 23 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 79
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 80 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 135
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
I ++L+ +I SG G G W D VA I +R DF EE + SH
Sbjct: 2 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVA-IKTIRE-GAMSEEDFIEEAEVMMKLSH 59
Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
P ++ + G C+ P + ++ ++M G L L G+ L +DV GMA+L
Sbjct: 60 PKLVQLYGVCLEQAP-ICLVFEFMEHGCLSDYLRTQRGLFAA-ETLLGMCLDVCEGMAYL 117
Query: 218 HSLERIIPQYQLNSRHVMV 236
E + L +R+ +V
Sbjct: 118 E--EACVIHRDLAARNCLV 134
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 104 LSLHTKISSGPNGDTWRGRWQKNDIVA-KILAVRNCTPRVSRDFNEEFPKLRIFSHPNVL 162
L L ++ +G G+ W G + + VA K L + +P F E ++ H ++
Sbjct: 24 LKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLV 80
Query: 163 PVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ V P + +I++YM GSL L +GI + + L A +A GMAF+
Sbjct: 81 RLYAVVTQEP-IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 136
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
I ++L+ +I SG G G W D VA I +R DF EE + SH
Sbjct: 4 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVA-IKTIRE-GAMSEEDFIEEAEVMMKLSH 61
Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
P ++ + G C+ P + ++ ++M G L L G+ L +DV GMA+L
Sbjct: 62 PKLVQLYGVCLEQAP-ICLVFEFMEHGCLSDYLRTQRGLFAA-ETLLGMCLDVCEGMAYL 119
Query: 218 HSLERIIPQYQLNSRHVMV 236
E + L +R+ +V
Sbjct: 120 E--EACVIHRDLAARNCLV 136
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 93 LSRHKGISLNDLSLHTK-------ISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRD 145
L + K SL +L + + + G G ++GR +VA T
Sbjct: 14 LGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQ 73
Query: 146 FNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE--GAGIVVDFAQA 203
F E + + H N+L + G +P + +++ YMA GS+ + L E + +D+ +
Sbjct: 74 FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKR 133
Query: 204 LRFAVDVARGMAFLH 218
R A+ ARG+A+LH
Sbjct: 134 QRIALGSARGLAYLH 148
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS- 157
I +L+L I G G +R W +++ K A + +S+ + ++F+
Sbjct: 4 IDFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKA-ARHDPDEDISQTIENVRQEAKLFAM 62
Query: 158 --HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMA 215
HPN++ + G P+L ++ ++ G L +L G I D + +AV +ARGM
Sbjct: 63 LKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVL-SGKRIPPDI--LVNWAVQIARGMN 119
Query: 216 FLHSLERIIP--QYQLNSRHVMV 236
+LH E I+P L S ++++
Sbjct: 120 YLHD-EAIVPIIHRDLKSSNILI 141
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88 SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
+RD + R + + L I G GD +G + + A +A++ C S
Sbjct: 382 TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 435
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
E+F + +R F HP+++ +IG + P + +I + G L + L + +D A
Sbjct: 436 EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKFSLDLASL 493
Query: 204 LRFAVDVARGMAFLHS 219
+ +A ++ +A+L S
Sbjct: 494 ILYAYQLSTALAYLES 509
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
I ++L+ +I SG G G W D VA I +R DF EE + SH
Sbjct: 7 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVA-IKTIRE-GAMSEEDFIEEAEVMMKLSH 64
Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
P ++ + G C+ P + ++ ++M G L L G+ L +DV GMA+L
Sbjct: 65 PKLVQLYGVCLEQAP-ICLVFEFMEHGCLSDYLRTQRGLFAA-ETLLGMCLDVCEGMAYL 122
Query: 218 HSLERIIPQYQLNSRHVMV 236
E + L +R+ +V
Sbjct: 123 E--EACVIHRDLAARNCLV 139
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILIGELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88 SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
+RD + R + + L I G GD +G + + A +A++ C S
Sbjct: 382 TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 435
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
E+F + +R F HP+++ +IG + P + +I + G L + L + +D A
Sbjct: 436 EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKFSLDLASL 493
Query: 204 LRFAVDVARGMAFLHS 219
+ +A ++ +A+L S
Sbjct: 494 ILYAYQLSTALAYLES 509
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D G +PL W+ G+ ++ LL+ GA VN N +TPL +A+ +G +IV+ L
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
D G + L WA K L + E LL +G+ VN + TPL + G+ ++ L
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D+ GF+PL WA G ++ V LL+ GA + + ++ L LA+ G+ DIV LL
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+++ D +G +PL +A + H+K VE LL RGA + TP+ LA A G+ + +++
Sbjct: 95 INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ D+ GF+PL WA G ++ V LL+ GA + + ++ L LA+ G+ DIV LL
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+++ D +G +PL +A H+K VE LL RGA + TP+ LA A G+ + +++
Sbjct: 95 INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88 SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
+RD + R + + L I G GD +G + + A +A++ C S
Sbjct: 2 TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 55
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
E+F + +R F HP+++ +IG + P + +I + G L + L + +D A
Sbjct: 56 EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKFSLDLASL 113
Query: 204 LRFAVDVARGMAFLHS 219
+ +A ++ +A+L S
Sbjct: 114 ILYAYQLSTALAYLES 129
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88 SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
+RD + R + + L I G GD +G + + A +A++ C S
Sbjct: 2 TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 55
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
E+F + +R F HP+++ +IG + P + +I + G L + L + +D A
Sbjct: 56 EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKFSLDLASL 113
Query: 204 LRFAVDVARGMAFLHS 219
+ +A ++ +A+L S
Sbjct: 114 ILYAYQLSTALAYLES 129
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 25/139 (17%)
Query: 120 RGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ 179
+GR + K+L N +P RD EF L+ +HP+V+ + G + L++I +
Sbjct: 48 KGRAGYTTVAVKMLK-ENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVE 106
Query: 180 YMAWGSLYALLHE----GAGIV------------------VDFAQALRFAVDVARGMAFL 217
Y +GSL L E G G + + + FA +++GM +L
Sbjct: 107 YAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL 166
Query: 218 HSLERIIPQYQLNSRHVMV 236
++ + L +R+++V
Sbjct: 167 AEMKLV--HRDLAARNILV 183
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSH 158
I ++L+ +I SG G G W D VA I +R DF EE + SH
Sbjct: 4 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVA-IKTIRE-GAMSEEDFIEEAEVMMKLSH 61
Query: 159 PNVLPVIG-CVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
P ++ + G C+ P + ++ ++M G L L G+ L +DV GMA+L
Sbjct: 62 PKLVQLYGVCLEQAP-ICLVFEFMEHGCLSDYLRTQRGLFAA-ETLLGMCLDVCEGMAYL 119
Query: 218 HSLERIIPQYQLNSRHVMV 236
E + L +R+ +V
Sbjct: 120 E--EASVIHRDLAARNCLV 136
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 55 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 113
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 114 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 146
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 25/139 (17%)
Query: 120 RGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ 179
+GR + K+L N +P RD EF L+ +HP+V+ + G + L++I +
Sbjct: 48 KGRAGYTTVAVKMLK-ENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVE 106
Query: 180 YMAWGSLYALLHE----GAGIV------------------VDFAQALRFAVDVARGMAFL 217
Y +GSL L E G G + + + FA +++GM +L
Sbjct: 107 YAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL 166
Query: 218 HSLERIIPQYQLNSRHVMV 236
++ + L +R+++V
Sbjct: 167 AEMKLV--HRDLAARNILV 183
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 95 RHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLR 154
R ++ ++ S + G G ++GR +VA F E +
Sbjct: 31 RELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVEMIS 90
Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE--GAGIVVDFAQALRFAVDVAR 212
+ H N+L + G +P + +++ YMA GS+ + L E + +D+ + R A+ AR
Sbjct: 91 MAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSAR 150
Query: 213 GMAFLH 218
G+A+LH
Sbjct: 151 GLAYLH 156
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 56 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 114
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 115 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 147
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSR-DFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR D E L+ HPNV+ + + D+++I + +A G L+ L E + +
Sbjct: 55 VSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEE- 113
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LHSL+ I + L ++M+
Sbjct: 114 -EATEFLKQILNGVYYLHSLQ--IAHFDLKPENIML 146
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88 SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
+RD + R + + L I G GD +G + + A +A++ C S
Sbjct: 2 TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVR 55
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
E+F + +R F HP+++ +IG + P + +I + G L + L + +D A
Sbjct: 56 EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSLDLASL 113
Query: 204 LRFAVDVARGMAFLHS 219
+ +A ++ +A+L S
Sbjct: 114 ILYAYQLSTALAYLES 129
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 83 GLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV 142
+ + +RD + R + + L I G GD +G + + A +A++ C
Sbjct: 25 AMGSSTRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT 78
Query: 143 SRDFNEEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVV 198
S E+F + +R F HP+++ +IG + P + +I + G L + L + +
Sbjct: 79 SDSVREKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSL 136
Query: 199 DFAQALRFAVDVARGMAFLHS 219
D A + +A ++ +A+L S
Sbjct: 137 DLASLILYAYQLSTALAYLES 157
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQD 70
G SPL A + L +V+LLLQ GA VNA + LH A+ G L +VR L V++ D
Sbjct: 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL-VRSGAD 208
Query: 71 LTKINFKDQSWLGLKTRSR 89
+ N + + L + RSR
Sbjct: 209 SSLKNCHNDTPL-MVARSR 226
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 8 DDHGFSPLHWACKEGHL----KLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
D+ G +PLH A +G+L +LV L Q G ++ N TPLHLA +VRLL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
G S LH A G L LV L++ GA + N +DTPL +A + +DI+R
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATN-RGDDTPLHLAAAHGHLDIVRLL 63
G + LH A + V+LLL+RGA ++A + + +PL A + L +V+LL
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 83 GLKTRSRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRV 142
+ + +RD + R + + L I G GD +G + + A +A++ C
Sbjct: 2 AMGSSTRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT 55
Query: 143 SRDFNEEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVV 198
S E+F + +R F HP+++ +IG + P + +I + G L + L + +
Sbjct: 56 SDSVREKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSL 113
Query: 199 DFAQALRFAVDVARGMAFLHS 219
D A + +A ++ +A+L S
Sbjct: 114 DLASLILYAYQLSTALAYLES 134
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 25/139 (17%)
Query: 120 RGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQ 179
+GR + K+L N +P RD EF L+ +HP+V+ + G + L++I +
Sbjct: 48 KGRAGYTTVAVKMLK-ENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVE 106
Query: 180 YMAWGSLYALLHE----GAGIV------------------VDFAQALRFAVDVARGMAFL 217
Y +GSL L E G G + + + FA +++GM +L
Sbjct: 107 YAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL 166
Query: 218 HSLERIIPQYQLNSRHVMV 236
+ + L +R+++V
Sbjct: 167 AEMSLV--HRDLAARNILV 183
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88 SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
+RD + R + + L I G GD +G + + A +A++ C S
Sbjct: 2 TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVR 55
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
E+F + +R F HP+++ +IG + P + +I + G L + L + +D A
Sbjct: 56 EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSLDLASL 113
Query: 204 LRFAVDVARGMAFLHS 219
+ +A ++ +A+L S
Sbjct: 114 ILYAYQLSTALAYLES 129
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88 SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
+RD + R + + L I G GD +G + + A +A++ C S
Sbjct: 4 TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVR 57
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
E+F + +R F HP+++ +IG + P + +I + G L + L + +D A
Sbjct: 58 EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSLDLASL 115
Query: 204 LRFAVDVARGMAFLHS 219
+ +A ++ +A+L S
Sbjct: 116 ILYAYQLSTALAYLES 131
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 88 SRDATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN 147
+RD + R + + L I G GD +G + + A +A++ C S
Sbjct: 5 TRDYEIQRER------IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVR 58
Query: 148 EEFPK----LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQA 203
E+F + +R F HP+++ +IG + P + +I + G L + L + +D A
Sbjct: 59 EKFLQEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSLDLASL 116
Query: 204 LRFAVDVARGMAFLHS 219
+ +A ++ +A+L S
Sbjct: 117 ILYAYQLSTALAYLES 132
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 2 YYVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVR 61
Y V D G +PL+ A +++ + L+ RGA +N N D+P A A G +I+
Sbjct: 30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILA 89
Query: 62 LLAVQNNQDLTKIN 75
+ DL K N
Sbjct: 90 YMLKHATPDLNKHN 103
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV-----RNCTPRVSR--DF 146
SR ++ N++ +I G G +GR K+ V I ++ T + + +F
Sbjct: 11 SRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEF 70
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRF 206
E + +HPN++ + G +++PP +V+ +++ G LY L + A + ++ LR
Sbjct: 71 QREVFIMSNLNHPNIVKLYGLMHNPPRMVM--EFVPCGDLYHRLLDKAH-PIKWSVKLRL 127
Query: 207 AVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL 239
+D+A G+ ++ + I L S ++ + L
Sbjct: 128 MLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSL 160
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV-----RNCTPRVSR--DF 146
SR ++ N++ +I G G +GR K+ V I ++ T + + +F
Sbjct: 11 SRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEF 70
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRF 206
E + +HPN++ + G +++PP +V+ +++ G LY L + A + ++ LR
Sbjct: 71 QREVFIMSNLNHPNIVKLYGLMHNPPRMVM--EFVPCGDLYHRLLDKAH-PIKWSVKLRL 127
Query: 207 AVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL 239
+D+A G+ ++ + I L S ++ + L
Sbjct: 128 MLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSL 160
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAV-----RNCTPRVSR--DF 146
SR ++ N++ +I G G +GR K+ V I ++ T + + +F
Sbjct: 11 SRLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEF 70
Query: 147 NEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRF 206
E + +HPN++ + G +++PP +V+ +++ G LY L + A + ++ LR
Sbjct: 71 QREVFIMSNLNHPNIVKLYGLMHNPPRMVM--EFVPCGDLYHRLLDKAH-PIKWSVKLRL 127
Query: 207 AVDVARGMAFLHSLERIIPQYQLNSRHVMVYIL 239
+D+A G+ ++ + I L S ++ + L
Sbjct: 128 MLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSL 160
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPK- 152
S GI+ D+ L+ + G G+ + G + + +AV+ C + D E+F
Sbjct: 16 SPQYGIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSE 75
Query: 153 ---LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVD 209
++ HP+++ +IG + P +++ Y +G L L + L +++
Sbjct: 76 AVIMKNLDHPHIVKLIGIIEEEPTWIIMELY-PYGELGHYLERNKNSLKVLTLVL-YSLQ 133
Query: 210 VARGMAFLHSL 220
+ + MA+L S+
Sbjct: 134 ICKAMAYLESI 144
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 98 GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPK----L 153
GI+ D+ L+ + G G+ + G + + +AV+ C + D E+F +
Sbjct: 4 GIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIM 63
Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
+ HP+++ +IG + P +++ Y +G L L + L +++ + +
Sbjct: 64 KNLDHPHIVKLIGIIEEEPTWIIMELY-PYGELGHYLERNKNSLKVLTLVL-YSLQICKA 121
Query: 214 MAFLHSL 220
MA+L S+
Sbjct: 122 MAYLESI 128
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 98 GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPK----L 153
GI+ D+ L+ + G G+ + G + + +AV+ C + D E+F +
Sbjct: 8 GIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIM 67
Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARG 213
+ HP+++ +IG + P +++ Y +G L L + L +++ + +
Sbjct: 68 KNLDHPHIVKLIGIIEEEPTWIIMELY-PYGELGHYLERNKNSLKVLTLVL-YSLQICKA 125
Query: 214 MAFLHSL 220
MA+L S+
Sbjct: 126 MAYLESI 132
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPK----LR 154
I + L I G GD +G + + A +A++ C S E+F + +R
Sbjct: 4 IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMR 63
Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGM 214
F HP+++ +IG + P + +I + G L + L + +D A + +A ++ +
Sbjct: 64 QFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFL-QVRKYSLDLASLILYAYQLSTAL 121
Query: 215 AFLHS 219
A+L S
Sbjct: 122 AYLES 126
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS----RDFNEEFPKL-RIF 156
ND+ I G G + R +K+ + A++ S RDF E L ++
Sbjct: 22 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDA-AIKRMKEYASKDDHRDFAGELEVLCKLG 80
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA--------------Q 202
HPN++ ++G L + +Y G+L L + + D A Q
Sbjct: 81 HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 140
Query: 203 ALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L FA DVARGM +L + I L +R+++V
Sbjct: 141 LLHFAADVARGMDYLSQKQFI--HRNLAARNILV 172
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS----RDFNEEFPKL-RIF 156
ND+ I G G + R +K+ + A++ S RDF E L ++
Sbjct: 15 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDA-AIKRMKEYASKDDHRDFAGELEVLCKLG 73
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA--------------Q 202
HPN++ ++G L + +Y G+L L + + D A Q
Sbjct: 74 HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 133
Query: 203 ALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L FA DVARGM +L + I L +R+++V
Sbjct: 134 LLHFAADVARGMDYLSQKQFI--HRDLAARNILV 165
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 102 NDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVS----RDFNEEFPKL-RIF 156
ND+ I G G + R +K+ + A++ S RDF E L ++
Sbjct: 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDA-AIKRMKEYASKDDHRDFAGELEVLCKLG 83
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFA--------------Q 202
HPN++ ++G L + +Y G+L L + + D A Q
Sbjct: 84 HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ 143
Query: 203 ALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L FA DVARGM +L + I L +R+++V
Sbjct: 144 LLHFAADVARGMDYLSQKQFI--HRDLAARNILV 175
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 120 RGRWQKNDIVAKILAVRNCTPR---VSRD-FNEEFPKLRIFSHPNVLPVIGCVNSPPDLV 175
R + + AK + R + VSR+ E LR HPN++ + + D+V
Sbjct: 32 RQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 91
Query: 176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVM 235
+I + ++ G L+ L E + D +A +F + G+ +LHS + I + L ++M
Sbjct: 92 LILELVSGGELFDFLAEKESLTED--EATQFLKQILDGVHYLHS--KRIAHFDLKPENIM 147
Query: 236 V 236
+
Sbjct: 148 L 148
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 120 RGRWQKNDIVAKILAVRNCTPR---VSRD-FNEEFPKLRIFSHPNVLPVIGCVNSPPDLV 175
R + + AK + R + VSR+ E LR HPN++ + + D+V
Sbjct: 25 RQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84
Query: 176 VISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVM 235
+I + ++ G L+ L E + D +A +F + G+ +LHS + I + L ++M
Sbjct: 85 LILELVSGGELFDFLAEKESLTED--EATQFLKQILDGVHYLHS--KRIAHFDLKPENIM 140
Query: 236 V 236
+
Sbjct: 141 L 141
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 126 NDIVAKILAVR----NCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN--SPPDLVVISQ 179
ND +++AV+ + P+ + +E LR H +++ GC L ++ +
Sbjct: 56 NDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVME 115
Query: 180 YMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
Y+ GSL L + + AQ L FA + GMA+LH+ I L +R+V++
Sbjct: 116 YVPLGSLRDYLPRHS---IGLAQLLLFAQQICEGMAYLHAQHYI--HRDLAARNVLL 167
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 142 VSRD-FNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR+ E LR HPN++ + + D+V+I + ++ G L+ L E + D
Sbjct: 71 VSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTED- 129
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A +F + G+ +LHS + I + L ++M+
Sbjct: 130 -EATQFLKQILDGVHYLHS--KRIAHFDLKPENIML 162
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL- 62
V+ D G PLH A GH L L L+RGA + A + PL +A + DIV L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Query: 63 -LAVQNNQDLTKINFKDQSWL 82
LA + + D+++L
Sbjct: 321 RLAKMREAEAAQGQAGDETYL 341
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT 72
+PL A L E LLQ GA VN + PLH A GH + L ++ DL
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF-LKRGADLG 295
Query: 73 KINFKDQSWLGLKTRSRDATL 93
+ + + L + + +A +
Sbjct: 296 ARDSEGRDPLTIAMETANADI 316
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL- 62
V+ D G PLH A GH L L L+RGA + A + PL +A + DIV L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Query: 63 -LAVQNNQDLTKINFKDQSWL 82
LA + + D+++L
Sbjct: 321 RLAKMREAEAAQGQAGDETYL 341
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT 72
+PL A L E LLQ GA VN + PLH A GH + L ++ DL
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF-LKRGADLG 295
Query: 73 KINFKDQSWLGLKTRSRDATL 93
+ + + L + + +A +
Sbjct: 296 ARDSEGRDPLTIAMETANADI 316
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRL- 62
V+ D G PLH A GH L L L+RGA + A + PL +A + DIV L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Query: 63 -LAVQNNQDLTKINFKDQSWL 82
LA + + D+++L
Sbjct: 321 RLAKMREAEAAQGQAGDETYL 341
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLT 72
+PL A L E LLQ GA VN + PLH A GH + L ++ DL
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF-LKRGADLG 295
Query: 73 KINFKDQSWLGLKTRSRDATL 93
+ + + L + + +A +
Sbjct: 296 ARDSEGRDPLTIAMETANADI 316
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
I DL+ ++ +G G G+W+ + D+ K++ + + +F EE + S
Sbjct: 1 IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLS 57
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + G + +I++YMA G L L E Q L DV M +L
Sbjct: 58 HEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYL 116
Query: 218 HS 219
S
Sbjct: 117 ES 118
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G S LHWA ++ +LL+ GA + N ++TPL LAA G + ++L
Sbjct: 115 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 174
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+PL A +EG + ++LL A + T+ D P +A H DIVRLL
Sbjct: 157 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
I DL+ ++ +G G G+W+ + D+ K++ + + +F EE + S
Sbjct: 6 IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLS 62
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + G + +I++YMA G L L E Q L DV M +L
Sbjct: 63 HEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYL 121
Query: 218 HS 219
S
Sbjct: 122 ES 123
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
I DL+ ++ +G G G+W+ + D+ K++ + + +F EE + S
Sbjct: 6 IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLS 62
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + G + +I++YMA G L L E Q L DV M +L
Sbjct: 63 HEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYL 121
Query: 218 HS 219
S
Sbjct: 122 ES 123
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 109 KISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGC- 167
+I G G+ W G+W+ + K+ T S E + + H N+L I
Sbjct: 44 QIGKGRYGEVWMGKWRGEKVAVKVFFT---TEEASWFRETEIYQTVLMRHENILGFIAAD 100
Query: 168 ---VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
S L +I+ Y GSLY L +D L+ A G+ LH+
Sbjct: 101 IKGTGSWTQLYLITDYHENGSLYDYLK---STTLDAKSMLKLAYSSVSGLCHLHT 152
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
I DL+ ++ +G G G+W+ + D+ K++ + + +F EE + S
Sbjct: 12 IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLS 68
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + G + +I++YMA G L L E Q L DV M +L
Sbjct: 69 HEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYL 127
Query: 218 HS 219
S
Sbjct: 128 ES 129
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G S LHWA ++ +LL+ GA + N ++TPL LAA G + ++L
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
+PL A +EG + ++LL A + T+ D P +A H DIVRLL ++
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
I DL+ ++ +G G G+W+ + D+ K++ + + +F EE + S
Sbjct: 5 IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLS 61
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + G + +I++YMA G L L E Q L DV M +L
Sbjct: 62 HEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYL 120
Query: 218 HS 219
S
Sbjct: 121 ES 122
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 18/173 (10%)
Query: 72 TKINFKDQSWLGLKTRSRDATL--SRHKGISLNDLSLHTKISSGPNGDTWRGRWQK-NDI 128
T N Q +G RD T RH L ++ G G R+ D
Sbjct: 16 TTENLYFQGAMGSAFEDRDPTQFEERH-------LKFLQQLGKGNFGSVEMCRYDPLQDN 68
Query: 129 VAKILAVRN---CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAW 183
+++AV+ T RDF E L+ H N++ G S +L +I +Y+ +
Sbjct: 69 TGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 128
Query: 184 GSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
GSL L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 129 GSLRDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 178
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G S LHWA ++ +LL+ GA + N ++TPL LAA G + ++L
Sbjct: 151 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 210
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
+PL A +EG + ++LL A + T+ D P +A H DIVRLL N
Sbjct: 193 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 247
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G S LHWA ++ +LL+ GA + N ++TPL LAA G + ++L
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQ 66
+PL A +EG + ++LL A + T+ D P +A H DIVRLL ++
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 4 VSVTDDHGFSPLHWA-CKEGHLK-------------LVELLLQRGARVNATNRGDDTPLH 49
V+V GF+PL A C G L+ + + + Q + N T+R T LH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALH 62
Query: 50 LAAAHGHLDIVRLL 63
LAAA+ D + L
Sbjct: 63 LAAAYSRSDAAKRL 76
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G S LHWA ++ +LL+ GA + N ++TPL LAA G + ++L
Sbjct: 41 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 100
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
+PL A +EG + ++LL A + T+ D P +A H DIVRLL
Sbjct: 83 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
I DL+ ++ +G G G+W+ + D+ K++ + + +F EE + S
Sbjct: 21 IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLS 77
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + G + +I++YMA G L L E Q L DV M +L
Sbjct: 78 HEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYL 136
Query: 218 HS 219
S
Sbjct: 137 ES 138
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQ-KNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
I DL+ ++ +G G G+W+ + D+ K++ + + +F EE + S
Sbjct: 21 IDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLS 77
Query: 158 HPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFL 217
H ++ + G + +I++YMA G L L E Q L DV M +L
Sbjct: 78 HEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH-RFQTQQLLEMCKDVCEAMEYL 136
Query: 218 HS 219
S
Sbjct: 137 ES 138
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
V+ DD G S LHWA ++ +LL+ GA + N ++TPL LAA G + ++L
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 13 SPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
+PL A +EG + ++LL A + T+ D P +A H DIVRLL N
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
++ D+ G + LHWA + + V +LL A +A + D+TPL LAA G + + L
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 203
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN-NQ 69
G +PL A + +VE L+ A +NA + T LH AAA + + V +L + + N+
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR 177
Query: 70 DLTKINFKDQSWLGLKTRS 88
D + KD++ L L R
Sbjct: 178 DAQ--DDKDETPLFLAARE 194
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 129 VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSL 186
V + +++ T RDF E L+ H N++ G S +L +I +Y+ +GSL
Sbjct: 44 VVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 103
Query: 187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L A +D + L++ + +GM +L + I L +R+++V
Sbjct: 104 RDYLQAHAE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 150
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 110 ISSGPNGDTWRGRWQ----KNDIVAKILAVR-NCTPRVSRDFNEEFPKLRIFSHPNVLPV 164
I +G G+ ++G + K ++ I ++ T + DF E + FSH N++ +
Sbjct: 52 IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRL 111
Query: 165 IGCVNSPPDLVVISQYMAWGSLYALLHEGAG--IVVDFAQALRFAVDVARGMAFLHSLER 222
G ++ +++I++YM G+L L E G V+ LR +A GM +L ++
Sbjct: 112 EGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLR---GIAAGMKYLANMNY 168
Query: 223 IIPQYQLNSRHVMV 236
+ L +R+++V
Sbjct: 169 V--HRDLAARNILV 180
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD---TPLHLAAAHGHLDIVRLL 63
D G PLHW+ ++ LL + VN + DD TP H+A + G+L++V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRG-ARVNATNRGDDTPLHLAAAHGHLDIVRL 62
V + D PLH A G LKL+ELL G + VN ++ TPL A A GH D L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 63 L 63
L
Sbjct: 193 L 193
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 39/113 (34%)
Query: 8 DDHGFSPLHWACKEGHLKLV-----------------------------------ELLLQ 32
DD G++P H AC G+L++V + L++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 33 RGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD-QSWLGL 84
GA V ++ + PLH AA+ G L ++ LL + +N++D Q W L
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK---SAVNWQDKQGWTPL 178
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD---TPLHLAAAHGHLDIVRLL 63
D G PLHW+ ++ LL + VN + DD TP H+A + G+L++V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRG-ARVNATNRGDDTPLHLAAAHGHLDIVRL 62
V + D PLH A G LKL+ELL G + VN ++ TPL A A GH D L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 63 L 63
L
Sbjct: 193 L 193
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 39/113 (34%)
Query: 8 DDHGFSPLHWACKEGHLKLV-----------------------------------ELLLQ 32
DD G++P H AC G+L++V + L++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 33 RGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD-QSWLGL 84
GA V ++ + PLH AA+ G L ++ LL + +N++D Q W L
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK---SAVNWQDKQGWTPL 178
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDD---TPLHLAAAHGHLDIVRLL 63
D G PLHW+ ++ LL + VN + DD TP H+A + G+L++V+ L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRG-ARVNATNRGDDTPLHLAAAHGHLDIVRL 62
V + D PLH A G LKL+ELL G + VN ++ TPL A A GH D L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 63 L 63
L
Sbjct: 193 L 193
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 39/113 (34%)
Query: 8 DDHGFSPLHWACKEGHLKLV-----------------------------------ELLLQ 32
DD G++P H AC G+L++V + L++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 33 RGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKD-QSWLGL 84
GA V ++ + PLH AA+ G L ++ LL + +N++D Q W L
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK---SAVNWQDKQGWTPL 178
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 19/140 (13%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRW-----QKNDIVAKILAVRNCTPRVSRDFNEEFPKL 153
I D+ L ++ G G + K+ ++ + A+++ T +DF E L
Sbjct: 12 IKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELL 71
Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHE---GAGIVVD----------- 199
H +++ G L+++ +YM G L L A I+VD
Sbjct: 72 TNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELG 131
Query: 200 FAQALRFAVDVARGMAFLHS 219
+Q L A +A GM +L S
Sbjct: 132 LSQMLHIASQIASGMVYLAS 151
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 127 DIVAKILAVRN---CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYM 181
D +++AV+ T RDF E L+ H N++ G S +L +I +Y+
Sbjct: 54 DNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYL 113
Query: 182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+GSL L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 114 PYGSLRDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 165
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 129 VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSL 186
V + +++ T RDF E L+ H N++ G S +L +I +Y+ +GSL
Sbjct: 59 VVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 118
Query: 187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 119 RDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 165
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 127 DIVAKILAVRN---CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYM 181
D +++AV+ T RDF E L+ H N++ G S +L +I +Y+
Sbjct: 39 DNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYL 98
Query: 182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+GSL L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 99 PYGSLRDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 150
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 127 DIVAKILAVRN---CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYM 181
D +++AV+ T RDF E L+ H N++ G S +L +I +Y+
Sbjct: 43 DNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYL 102
Query: 182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+GSL L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 103 PYGSLRDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 154
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 129 VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSL 186
V + +++ T RDF E L+ H N++ G S +L +I +Y+ +GSL
Sbjct: 42 VVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 101
Query: 187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 102 RDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRNLATRNILV 148
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 129 VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSL 186
V + +++ T RDF E L+ H N++ G S +L +I +Y+ +GSL
Sbjct: 41 VVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 100
Query: 187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 101 RDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 147
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 125 KNDIVAKILAVRNCTPRVSRDFNEEF-PKLRIFSH----PNVLPVIGCVNSPPDLVVISQ 179
K D V K+ AV+ D E +L+I SH N++ ++G ++VI++
Sbjct: 72 KEDAVLKV-AVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITE 130
Query: 180 YMAWGSLYALLHEGA--------GIVVDFAQALRFAVDVARGMAFLHS 219
Y +G L L A G ++ L F+ VA+GMAFL S
Sbjct: 131 YCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFLAS 178
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 129 VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSL 186
V + +++ T RDF E L+ H N++ G S +L +I +Y+ +GSL
Sbjct: 41 VVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 100
Query: 187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 101 RDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 147
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 129 VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSL 186
V + +++ T RDF E L+ H N++ G S +L +I +Y+ +GSL
Sbjct: 40 VVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 99
Query: 187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 100 RDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 146
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 125 KNDIVAKILAVRNCTPRVSRDFNEEF-PKLRIFSH----PNVLPVIGCVNSPPDLVVISQ 179
K D V K+ AV+ D E +L+I SH N++ ++G ++VI++
Sbjct: 64 KEDAVLKV-AVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITE 122
Query: 180 YMAWGSLYALLHEGA--------GIVVDFAQALRFAVDVARGMAFLHS 219
Y +G L L A G ++ L F+ VA+GMAFL S
Sbjct: 123 YCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFLAS 170
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 129 VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSL 186
V + +++ T RDF E L+ H N++ G S +L +I +Y+ +GSL
Sbjct: 39 VVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 98
Query: 187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 99 RDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 145
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 129 VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSL 186
V + +++ T RDF E L+ H N++ G S +L +I +Y+ +GSL
Sbjct: 47 VVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 106
Query: 187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 107 RDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 153
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 127 DIVAKILAVRN---CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYM 181
D +++AV+ T RDF E L+ H N++ G S +L +I +Y+
Sbjct: 41 DNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYL 100
Query: 182 AWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+GSL L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 101 PYGSLRDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 152
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 129 VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSL 186
V + +++ T RDF E L+ H N++ G S +L +I +Y+ +GSL
Sbjct: 41 VVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 100
Query: 187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 101 RDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 147
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 129 VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSL 186
V + +++ T RDF E L+ H N++ G S +L +I +Y+ +GSL
Sbjct: 45 VVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSL 104
Query: 187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 105 RDYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 151
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 86 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 143
Query: 211 ARGMAFLHS 219
A+GM FL S
Sbjct: 144 AKGMKFLAS 152
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 83 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 140
Query: 211 ARGMAFLHS 219
A+GM FL S
Sbjct: 141 AKGMKFLAS 149
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 86 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 143
Query: 211 ARGMAFLHS 219
A+GM FL S
Sbjct: 144 AKGMKFLAS 152
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 109 KISSGPNGDTWRGRWQKNDIVAKILA--VRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
K+ G G ++G + K LA V T + + F++E + H N++ ++G
Sbjct: 32 KMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 91
Query: 167 CVNSPPDLVVISQYMAWGSLYALLHEGAGI-VVDFAQALRFAVDVARGMAFLHS 219
+ DL ++ YM GSL L G + + + A A G+ FLH
Sbjct: 92 FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE 145
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 85 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 142
Query: 211 ARGMAFLHS 219
A+GM FL S
Sbjct: 143 AKGMKFLAS 151
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 109 KISSGPNGDTWRGRWQKNDIVAKILA--VRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
K+ G G ++G + K LA V T + + F++E + H N++ ++G
Sbjct: 38 KMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 167 CVNSPPDLVVISQYMAWGSLYALLHEGAGI-VVDFAQALRFAVDVARGMAFLHS 219
+ DL ++ YM GSL L G + + + A A G+ FLH
Sbjct: 98 FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE 151
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/70 (20%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 149 EFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAV 208
E L++F HP+++ + +++P D+ ++ +Y++ G L+ + + + D ++ R
Sbjct: 66 EIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRL--DEKESRRLFQ 123
Query: 209 DVARGMAFLH 218
+ G+ + H
Sbjct: 124 QILSGVDYCH 133
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 85 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 142
Query: 211 ARGMAFLHS 219
A+GM FL S
Sbjct: 143 AKGMKFLAS 151
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 109 KISSGPNGDTWRGRWQKNDIVAKILA--VRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
K+ G G ++G + K LA V T + + F++E + H N++ ++G
Sbjct: 38 KMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97
Query: 167 CVNSPPDLVVISQYMAWGSLYALLHEGAGI-VVDFAQALRFAVDVARGMAFLHS 219
+ DL ++ YM GSL L G + + + A A G+ FLH
Sbjct: 98 FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHE 151
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 90 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 147
Query: 211 ARGMAFLHS 219
A+GM FL S
Sbjct: 148 AKGMKFLAS 156
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 144 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQV 201
Query: 211 ARGMAFLHS 219
A+GM FL S
Sbjct: 202 AKGMKFLAS 210
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 110 ISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN 169
+ G G + GR N + I + R S+ +EE + H N++ +G +
Sbjct: 16 LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFS 75
Query: 170 SPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAV-DVARGMAFLH 218
+ + + + GSL ALL G + D Q + F + G+ +LH
Sbjct: 76 ENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH 125
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 110 ISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN 169
+ G G + GR N + I + R S+ +EE + H N++ +G +
Sbjct: 30 LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFS 89
Query: 170 SPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAV-DVARGMAFLH 218
+ + + + GSL ALL G + D Q + F + G+ +LH
Sbjct: 90 ENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH 139
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 129 VAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPP--DLVVISQYMAWGSL 186
V + +++ T RDF E L+ H N++ G S +L +I +++ +GSL
Sbjct: 44 VVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSL 103
Query: 187 YALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
L + +D + L++ + +GM +L + I L +R+++V
Sbjct: 104 REYLQKHKE-RIDHIKLLQYTSQICKGMEYLGTKRYI--HRDLATRNILV 150
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 125 KNDIVAKILAVRNCTPRVS----RDFNEEFPKLRIFSHPNVLPVIG-CVNSPPD-LVVIS 178
+ D + +AV++ P D +E LR H N++ G C + + +I
Sbjct: 45 EGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIM 104
Query: 179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+++ GSL L + ++ Q L++AV + +GM +L S + + L +R+V+V
Sbjct: 105 EFLPSGSLKEYLPKNKN-KINLKQQLKYAVQICKGMDYLGSRQYV--HRDLAARNVLV 159
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 125 KNDIVAKILAVRNCTPRVS----RDFNEEFPKLRIFSHPNVLPVIG-CVNSPPD-LVVIS 178
+ D + +AV++ P D +E LR H N++ G C + + +I
Sbjct: 33 EGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIM 92
Query: 179 QYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+++ GSL L + ++ Q L++AV + +GM +L S + + L +R+V+V
Sbjct: 93 EFLPSGSLKEYLPKNKN-KINLKQQLKYAVQICKGMDYLGSRQYV--HRDLAARNVLV 147
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQR-GARVNATNRGDDTPLHLAAAHGHLDIVRL 62
V+V DD G + L AC+ GH ++ LLL ++ T+R T L +A G +I +
Sbjct: 209 VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASM 268
Query: 63 L 63
L
Sbjct: 269 L 269
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 110 ISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVN 169
I S NG + + K +IV ++ V + N+E L I +HP ++ + G
Sbjct: 25 IRSRHNGRYYAMKVLKKEIVVRLKQVEHT--------NDERLMLSIVTHPFIIRMWGTFQ 76
Query: 170 SPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLERI 223
+ +I Y+ G L++LL + A+ +A +V + +LHS + I
Sbjct: 77 DAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKF--YAAEVCLALEYLHSKDII 128
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 85 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 142
Query: 211 ARGMAFLHS 219
A+GM +L S
Sbjct: 143 AKGMKYLAS 151
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 17/91 (18%)
Query: 4 VSVTDDH--GFSPLHWACKEGHLKLVELLLQRGARVNATNRGD--------------DTP 47
S TD + G + LH A + + LV LL++ GA V A GD + P
Sbjct: 92 ASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELP 151
Query: 48 LHLAAAHGHLDIVRLLAVQNNQDLTKINFKD 78
L LAA L IV+ L +QN+ I+ +D
Sbjct: 152 LSLAACTNQLAIVKFL-LQNSWQPADISARD 181
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 84 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 141
Query: 211 ARGMAFLHS 219
A+GM +L S
Sbjct: 142 AKGMKYLAS 150
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 85 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 142
Query: 211 ARGMAFLHS 219
A+GM +L S
Sbjct: 143 AKGMKYLAS 151
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 103 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 160
Query: 211 ARGMAFLHS 219
A+GM +L S
Sbjct: 161 AKGMKYLAS 169
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 84 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 141
Query: 211 ARGMAFLHS 219
A+GM +L S
Sbjct: 142 AKGMKYLAS 150
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 80 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 137
Query: 211 ARGMAFLHS 219
A+GM +L S
Sbjct: 138 AKGMKYLAS 146
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 77 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 134
Query: 211 ARGMAFLHS 219
A+GM +L S
Sbjct: 135 AKGMKYLAS 143
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 83 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 140
Query: 211 ARGMAFLHS 219
A+GM +L S
Sbjct: 141 AKGMKYLAS 149
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 104 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 161
Query: 211 ARGMAFLHS 219
A+GM +L S
Sbjct: 162 AKGMKYLAS 170
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 153 LRIFSHPNVLPVIG-CVNSPPDLVVISQYMAWGSLYALL-HEGAGIVVDFAQALRFAVDV 210
++ FSHPNVL ++G C+ S +V+ YM G L + +E V + F + V
Sbjct: 82 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQV 139
Query: 211 ARGMAFLHS 219
A+GM +L S
Sbjct: 140 AKGMKYLAS 148
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 94 SRHKG-ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEE 149
S+H G + + L + G G G Q + + KIL + + V E
Sbjct: 2 SKHDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKRE 61
Query: 150 FPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLY 187
L++F HP+++ + +++P D ++ +Y++ G L+
Sbjct: 62 IQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELF 99
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 94 SRHKG-ISLNDLSLHTKISSGPNGDTWRGRWQ--KNDIVAKILAVRNC-TPRVSRDFNEE 149
S+H G + + L + G G G Q + + KIL + + V E
Sbjct: 2 SKHDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKRE 61
Query: 150 FPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLY 187
L++F HP+++ + +++P D ++ +Y++ G L+
Sbjct: 62 IQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELF 99
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEG--AGIVVDFAQALRFAVDV 210
L HP+++ +IG + ++++I +YM G+L L+ + + + Q L +
Sbjct: 89 LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGA 148
Query: 211 ARGMAFLHS 219
ARG+ +LH+
Sbjct: 149 ARGLHYLHT 157
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 PLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
P+H A +EG L + +L + GAR++ + P+ LA GH DI R L
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 22/153 (14%)
Query: 98 GISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFS 157
+ L++L L I G G ++G + + K+ + N ++ + ++ +
Sbjct: 9 SLDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFIN---EKNIYRVPLME 65
Query: 158 HPNVLP-VIG----CVNSPPDLVVISQYMAWGSL--YALLHEGAGIVVDFAQALRFAVDV 210
H N+ ++G + + +++ +Y GSL Y LH D+ + R A V
Sbjct: 66 HDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH-----TSDWVSSCRLAHSV 120
Query: 211 ARGMAFLHS-------LERIIPQYQLNSRHVMV 236
RG+A+LH+ + I LNSR+V+V
Sbjct: 121 TRGLAYLHTELPRGDHYKPAISHRDLNSRNVLV 153
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 153 LRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEG--AGIVVDFAQALRFAVDV 210
L HP+++ +IG + ++++I +YM G+L L+ + + + Q L +
Sbjct: 89 LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGA 148
Query: 211 ARGMAFLHS 219
ARG+ +LH+
Sbjct: 149 ARGLHYLHT 157
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 124 QKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG-CVNSPPDLVVISQYMA 182
+++ I+ + +++ + +DF+ E L H +++ G CV P L+++ +YM
Sbjct: 40 EQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDP-LIMVFEYMK 98
Query: 183 WGSLYALLHEGAGIVVDFA-----------QALRFAVDVARGMAFLHS 219
G L L V A Q L A +A GM +L S
Sbjct: 99 HGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS 146
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
++ G++PLH A + +VELLL+ GA + TP LAA G + +++L +
Sbjct: 56 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF-LSK 114
Query: 68 NQDLTKINF 76
D+ + +F
Sbjct: 115 GADVNECDF 123
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNAT----------NRGDDTPLHLAAA 53
V+ D +GF+ A G +K ++ L +RGA VN +G T L AA
Sbjct: 118 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177
Query: 54 HGHLDIVRLL 63
GH++++++L
Sbjct: 178 KGHVEVLKIL 187
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 26 LVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL 82
+ LLL GA VN TPL LA HL +V+ L Q + ++ + ++ L
Sbjct: 221 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 277
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQN 67
++ G++PLH A + +VELLL+ GA + TP LAA G + +++L +
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF-LSK 94
Query: 68 NQDLTKINF 76
D+ + +F
Sbjct: 95 GADVNECDF 103
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNA----------TNRGDDTPLHLAAA 53
V+ D +GF+ A G +K ++ L +RGA VN +G T L AA
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 54 HGHLDIVRLL 63
GH++++++L
Sbjct: 158 KGHVEVLKIL 167
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 29 LLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWL 82
LLL GA VN TPL LA HL +V+ L Q + ++ + ++ L
Sbjct: 204 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 125 KNDIVAKILAVRNCTPRVSRDFNEEF-PKLRIFSH----PNVLPVIGCVNSPPDLVVISQ 179
K D V K+ AV+ D E +L+I SH N++ ++G ++VI++
Sbjct: 72 KEDAVLKV-AVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITE 130
Query: 180 YMAWGSLYALLHEGAGIVVD---FAQA---------LRFAVDVARGMAFLHS 219
Y +G L L + ++ FA A L F+ VA+GMAFL S
Sbjct: 131 YCCYGDLLNFLRRKSRVLETDPAFAIANSTLSTRDLLHFSSQVAQGMAFLAS 182
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 125 KNDIVAKILAVRNCTPRVSRDFNEEF-PKLRIFSH----PNVLPVIGCVNSPPDLVVISQ 179
K D V K+ AV+ D E +L+I SH N++ ++G ++VI++
Sbjct: 72 KEDAVLKV-AVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITE 130
Query: 180 YMAWGSLYALLHEGAGIVVD---FAQA---------LRFAVDVARGMAFLHS 219
Y +G L L + ++ FA A L F+ VA+GMAFL S
Sbjct: 131 YCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLAS 182
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 30/163 (18%)
Query: 102 NDLSLHTKISSGPNGDTWRGR------WQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRI 155
N++ I G G ++ R ++ +VA + + + DF E +
Sbjct: 47 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 106
Query: 156 FSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVV----------------- 198
F +PN++ ++G + ++ +YMA+G L L + V
Sbjct: 107 FDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSP 166
Query: 199 -----DFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
A+ L A VA GMA+L ER L +R+ +V
Sbjct: 167 GPPPLSCAEQLCIARQVAAGMAYLS--ERKFVHRDLATRNCLV 207
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 138 CTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIV 197
C + R E LR HPN++ + + D+V+I + ++ G L+ L + +
Sbjct: 58 CREEIER----EVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLS 113
Query: 198 VDFAQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+ +A F + G+ +LH+ + I + L ++M+
Sbjct: 114 EE--EATSFIKQILDGVNYLHT--KKIAHFDLKPENIML 148
>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3
Length = 361
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 115 NGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN--EEFPKLRIFSHPNVLPVIGCVNSPP 172
+G+ R ++ + +++AV+ + D N E R HPN++ + +P
Sbjct: 30 SGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPT 89
Query: 173 DLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSLE 221
L +I +Y + G LY + D +A F + G+++ HS++
Sbjct: 90 HLAIIMEYASGGELYERICNAGRFSED--EARFFFQQLLSGVSYCHSMQ 136
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 18/140 (12%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRW-----QKNDIVAKILAVRNCTPRVSRDFNEEFPKL 153
I D+ L ++ G G + +++ ++ + A++ + +DF E L
Sbjct: 15 IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELL 74
Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL----------YALLHEGAGIV---VDF 200
+ H +++ G L+++ +YM G L LL G + +
Sbjct: 75 TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGL 134
Query: 201 AQALRFAVDVARGMAFLHSL 220
Q L A VA GM +L L
Sbjct: 135 GQLLAVASQVAAGMVYLAGL 154
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 18/140 (12%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRW-----QKNDIVAKILAVRNCTPRVSRDFNEEFPKL 153
I D+ L ++ G G + +++ ++ + A++ + +DF E L
Sbjct: 9 IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELL 68
Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL----------YALLHEGAGIV---VDF 200
+ H +++ G L+++ +YM G L LL G + +
Sbjct: 69 TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGL 128
Query: 201 AQALRFAVDVARGMAFLHSL 220
Q L A VA GM +L L
Sbjct: 129 GQLLAVASQVAAGMVYLAGL 148
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 110 ISSGPNGDTWRGRW---QKNDIVAKILAVRNCTPRVSRD-FNEEFPKLRIFSHPNVLPVI 165
I G G + G + +N I I ++ T + F E +R +HPNVL +I
Sbjct: 29 IGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALI 88
Query: 166 GCVNSPPDLV-VISQYMAWGSLYALLH--EGAGIVVDFAQALRFAVDVARGMAFL 217
G + P L V+ YM G L + + V D + F + VARGM +L
Sbjct: 89 GIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDL---ISFGLQVARGMEYL 140
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 18/140 (12%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRW-----QKNDIVAKILAVRNCTPRVSRDFNEEFPKL 153
I D+ L ++ G G + +++ ++ + A++ + +DF E L
Sbjct: 38 IKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELL 97
Query: 154 RIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL----------YALLHEGAGIV---VDF 200
+ H +++ G L+++ +YM G L LL G + +
Sbjct: 98 TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGL 157
Query: 201 AQALRFAVDVARGMAFLHSL 220
Q L A VA GM +L L
Sbjct: 158 GQLLAVASQVAAGMVYLAGL 177
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 PLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
P+H A +EG L + +L + GAR++ + P+ LA GH D+ R L
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 PLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
P+H A +EG L + +L + GAR++ + P+ LA GH D+ R L
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 141 RVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
RV R E L++ HP+++ + + +P D+V++ +Y A G L+ + E + D
Sbjct: 55 RVER----EISYLKLLRHPHIIKLYDVITTPTDIVMVIEY-AGGELFDYIVEKKRMTED- 108
Query: 201 AQALRFAVDVARGMAFLH 218
+ RF + + + H
Sbjct: 109 -EGRRFFQQIICAIEYCH 125
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Query: 111 SSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGC--- 167
+ G G W+ + + KI +++ + S E L H N+L IG
Sbjct: 33 ARGRFGCVWKAQLLNEYVAVKIFPIQD---KQSWQNEYEVYSLPGMKHENILQFIGAEKR 89
Query: 168 -VNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
+ DL +I+ + GSL L VV + + A +ARG+A+LH
Sbjct: 90 GTSVDVDLWLITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHE 139
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 8 DDHGFSPLHWACKEGHLKLVELLLQRGA-RVNATNRGD 44
D+HG +PLHW +L+LV+ L++ G+ R+ N G+
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE 165
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human
Iaspp
Length = 229
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 5 SVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAA 53
S ++ G + LH A + +V+ L+ GA VN+ + TPLH AA+
Sbjct: 48 SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS 96
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 4 VSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGD 44
V+ D HG++PLH A + L+Q GA + AT D
Sbjct: 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 93 LSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEE 149
+S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 4 MSKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRRE 63
Query: 150 FPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVD 209
HPN+L + G + + +I +Y G++Y L + + D + + +
Sbjct: 64 VEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITE 121
Query: 210 VARGMAFLHSLERII 224
+A +++ HS +R+I
Sbjct: 122 LANALSYCHS-KRVI 135
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 128 IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLY 187
+ + + + C+ + E ++F+HPN++P + +L V++ +MA+GS
Sbjct: 39 VTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAK 98
Query: 188 ALL--HEGAGI----VVDFAQALRFAVDVARGMAFLH 218
L+ H G+ + Q + A+D M ++H
Sbjct: 99 DLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVH 135
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 128 IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLY 187
+ + + + C+ + E ++F+HPN++P + +L V++ +MA+GS
Sbjct: 55 VTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAK 114
Query: 188 ALL--HEGAGI----VVDFAQALRFAVDVARGMAFLH 218
L+ H G+ + Q + A+D M ++H
Sbjct: 115 DLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVH 151
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 27/121 (22%)
Query: 125 KNDIVAKILAVRNCTPRVSRDFNEEF-PKLRIFSH----PNVLPVIGCVNSPPDLVVISQ 179
K D V K+ AV+ D E +L+I SH N++ ++G ++VI++
Sbjct: 57 KEDAVLKV-AVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITE 115
Query: 180 YMAWGSLYALLHEGA---------------------GIVVDFAQALRFAVDVARGMAFLH 218
Y +G L L A G ++ L F+ VA+GMAFL
Sbjct: 116 YCCYGDLLNFLRRKAEAMLGPSLAPGQDPEGLDKEDGRPLELRDLLHFSSQVAQGMAFLA 175
Query: 219 S 219
S
Sbjct: 176 S 176
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer
Complex
Length = 282
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLA 51
Y+ + +D G + LH A G VE L GA V RG T LHLA
Sbjct: 37 YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
G +PLH A + ++ELLL+ GA A G TPL A + + RLL
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 3 YVSVTDDHGFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLA 51
Y+ + +D G + LH A G VE L GA V RG T LHLA
Sbjct: 37 YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
G +PLH A + ++ELLL+ GA A G TPL A + + RLL
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 109 KISSGPNGDTWRGRWQKNDIVAKILA--VRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIG 166
K G G ++G + K LA V T + + F++E H N++ ++G
Sbjct: 29 KXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLG 88
Query: 167 CVNSPPDLVVISQYMAWGSLYALLHEGAGI-VVDFAQALRFAVDVARGMAFLHS 219
+ DL ++ Y GSL L G + + + A A G+ FLH
Sbjct: 89 FSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLHE 142
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 91 ATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFN 147
A S+ + +L D + + G G+ + R +++ + + + V
Sbjct: 2 AMESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLR 61
Query: 148 EEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFA 207
E HPN+L + G + + +I +Y G++Y L + + D + +
Sbjct: 62 REVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 119
Query: 208 VDVARGMAFLHSLERII 224
++A +++ HS +R+I
Sbjct: 120 TELANALSYCHS-KRVI 135
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 125 KNDIVAKILAVRNCTPRVSRDFNEEF-PKLRIFSH----PNVLPVIGCVNSPPDLVVISQ 179
K D V K+ AV+ D E +L+I SH N++ ++G ++VI++
Sbjct: 72 KEDAVLKV-AVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITE 130
Query: 180 YMAWGSLYALLHEGAGIVVDFA--------------QALRFAVDVARGMAFLHS 219
Y +G L L ++++ L F+ VA+GMAFL S
Sbjct: 131 YCCYGDLLNFLRRKRPPGLEYSYNPSHNPEEQLSSRDLLHFSSQVAQGMAFLAS 184
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 3 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 62
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 63 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 120
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 121 ANALSYCHS-KRVI 133
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 127 DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL 186
++ KI+ P + E ++I +HPN++ + + + L +I +Y + G +
Sbjct: 39 EVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEV 98
Query: 187 YALL 190
+ L
Sbjct: 99 FDYL 102
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 3 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 62
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 63 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 120
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 121 ANALSYCHS-KRVI 133
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 15 LHWACK---EGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
LH A K + L LV+ ++Q G ++A +T LH AA + D ++LL
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 226
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGD-------------DTPLHLAAAHGHL 57
G + LH A ++ LV LL RGA V+A G + PL AA G
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 58 DIVRLL 63
+IVRLL
Sbjct: 135 EIVRLL 140
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 3 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 62
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 63 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 120
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 121 ANALSYCHS-KRVI 133
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 127 DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL 186
++ KI+ P + E ++I +HPN++ + + + L +I +Y + G +
Sbjct: 42 EVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEV 101
Query: 187 YALL 190
+ L
Sbjct: 102 FDYL 105
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 3 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 62
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 63 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 120
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 121 ANALSYCHS-KRVI 133
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 1 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 60
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 61 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 118
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 119 ANALSYCHS-KRVI 131
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 1 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 60
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 61 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 118
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 119 ANALSYCHS-KRVI 131
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 11 GFSPLHWACKEGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLLA 64
G + LH+ C + + ++LLL+ A + N +TPL +A H LL
Sbjct: 205 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 15/136 (11%)
Query: 99 ISLNDLSLHTKISSGPNGDTWRGRWQKND-----IVAKILAVRNCTPRVSRDFNEEFPKL 153
I +L + G G + ++ D + K+L +F E +
Sbjct: 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACM 79
Query: 154 RIFSHPNVLPVIGCV------NSPPDLVVISQYMAWGSLYA-LLHEGAG---IVVDFAQA 203
+ F HP+V ++G P +VI +M G L+A LL G +
Sbjct: 80 KEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTL 139
Query: 204 LRFAVDVARGMAFLHS 219
+RF VD+A GM +L S
Sbjct: 140 VRFMVDIACGMEYLSS 155
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 2 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 61
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 62 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 119
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 120 ANALSYCHS-KRVI 132
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Query: 91 ATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFN 147
A S+ + +L D + + G G+ + R +++ + + + V
Sbjct: 2 AMESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLR 61
Query: 148 EEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFA 207
E HPN+L + G + + +I +Y G +Y L + + D + +
Sbjct: 62 REVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKF--DEQRTATYI 119
Query: 208 VDVARGMAFLHSLERII 224
++A +++ HS +R+I
Sbjct: 120 TELANALSYCHS-KRVI 135
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 2 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 61
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 62 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 119
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 120 ANALSYCHS-KRVI 132
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 5 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 64
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 65 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 122
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 123 ANALSYCHS-KRVI 135
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/64 (18%), Positives = 30/64 (46%)
Query: 127 DIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL 186
++ KI+ P + E ++I +HPN++ + + + L ++ +Y + G +
Sbjct: 42 EVAVKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLVMEYASGGEV 101
Query: 187 YALL 190
+ L
Sbjct: 102 FDYL 105
>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik)
pdb|4DN5|B Chain B, Crystal Structure Of Nf-kb-inducing Kinase (nik)
Length = 356
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 148 EEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFA 207
EE + P ++P+ G V P + + + + GSL L+ E + D +AL +
Sbjct: 115 EELMACAGLTSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLVKEQGCLPED--RALYYL 172
Query: 208 VDVARGMAFLHS 219
G+ +LHS
Sbjct: 173 GQALEGLEYLHS 184
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Query: 91 ATLSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFN 147
A S+ + +L D + + G G+ + R +++ + + + V
Sbjct: 2 AMESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLR 61
Query: 148 EEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFA 207
E HPN+L + G + + +I +Y G +Y L + + D + +
Sbjct: 62 REVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSKF--DEQRTATYI 119
Query: 208 VDVARGMAFLHSLERII 224
++A +++ HS +R+I
Sbjct: 120 TELANALSYCHS-KRVI 135
>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|B Chain B, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|D Chain D, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|E Chain E, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
Length = 371
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 148 EEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFA 207
EE + P ++P+ G V P + + + + GSL L+ E + D +AL +
Sbjct: 134 EELMACAGLTSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLVKEQGCLPED--RALYYL 191
Query: 208 VDVARGMAFLHS 219
G+ +LHS
Sbjct: 192 GQALEGLEYLHS 203
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 15 LHWACK---EGHLKLVELLLQRGARVNATNRGDDTPLHLAAAHGHLDIVRLL 63
LH A K + L LV+ ++Q G ++A +T LH AA + D ++LL
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 17 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 76
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 77 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 134
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 135 ANALSYCHS-KRVI 147
>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3C|B Chain B, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3E|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
pdb|4G3E|B Chain B, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
Length = 352
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 109 KISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCV 168
++ G G+ R + ++ + VR RV EE S P ++P+ G V
Sbjct: 81 RVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRV-----EELVACAGLSSPRIVPLYGAV 135
Query: 169 NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
P + + + + GSL L+ + + D +AL + G+ +LH+
Sbjct: 136 REGPWVNIFMELLEGGSLGQLIKQMGCLPED--RALYYLGQALEGLEYLHT 184
>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 2-(aminothiazoly)phenol (cmp2)
Length = 336
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 109 KISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCV 168
++ G G+ R + ++ + VR RV EE S P ++P+ G V
Sbjct: 65 RVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRV-----EELVACAGLSSPRIVPLYGAV 119
Query: 169 NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
P + + + + GSL L+ + + D +AL + G+ +LH+
Sbjct: 120 REGPWVNIFMELLEGGSLGQLIKQMGCLPED--RALYYLGQALEGLEYLHT 168
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 27/170 (15%)
Query: 93 LSRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVA-------KILAVRNCTPRVSRD 145
+++HK L ++SL G+ G+ K + + +A++ +
Sbjct: 12 INQHKQAKLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGP 71
Query: 146 FNEEF---PKLRI-FSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL-----HEGAGI 196
EEF LR HPNV+ ++G V L +I Y + G L+ L H G
Sbjct: 72 LREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGS 131
Query: 197 VVD---FAQALR------FAVDVARGMAFLHSLERIIPQYQLNSRHVMVY 237
D AL +A GM +L S + L +R+V+VY
Sbjct: 132 TDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVV--HKDLATRNVLVY 179
>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3)
Length = 350
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 109 KISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCV 168
++ G G+ R + ++ + VR RV EE S P ++P+ G V
Sbjct: 79 RLGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRV-----EELVACAGLSSPRIVPLYGAV 133
Query: 169 NSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAFLHS 219
P + + + + GSL L+ + + D +AL + G+ +LH+
Sbjct: 134 REGPWVNIFMELLEGGSLGQLIKQMGCLPED--RALYYLGQALEGLEYLHT 182
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 5 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 65 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 122
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 123 CHS-KRVI 129
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 123
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 124 CHS-KRVI 130
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 123
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 124 CHS-KRVI 130
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 10 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 70 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 127
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 128 CHS-KRVI 134
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 123
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 124 CHS-KRVI 130
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 123
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 124 CHS-KRVI 130
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 123
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 124 CHS-KRVI 130
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 26 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 85
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 86 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 143
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 144 ANALSYCHS-KRVI 156
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 94 SRHKGISLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEF 150
S+ + +L D + + G G+ + R +++ + + + V E
Sbjct: 26 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV 85
Query: 151 PKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDV 210
HPN+L + G + + +I +Y G++Y L + + D + + ++
Sbjct: 86 EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITEL 143
Query: 211 ARGMAFLHSLERII 224
A +++ HS +R+I
Sbjct: 144 ANALSYCHS-KRVI 156
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R ++ + + + V E
Sbjct: 3 ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 63 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 120
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 121 CHS-KRVI 127
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 124
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 125 CHS-KRVI 131
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 126
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 127 CHS-KRVI 133
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTW--RGRWQKNDIVAKILAVRNCTPR-VSRDFNEEFPKLRIF 156
+L D + + G G+ + R R K + K+L V E
Sbjct: 10 TLEDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHL 69
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 70 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRF--DEQRTATYITELANALSY 127
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 128 CHS-KRVI 134
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTW--RGRWQKNDIVAKILAVRNCTPR-VSRDFNEEFPKLRIF 156
+L D + + G G+ + R R K + K+L V E
Sbjct: 10 TLEDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHL 69
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 70 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRF--DEQRTATYITELANALSY 127
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 128 CHS-KRVI 134
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 123
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 124 CHS-KRVI 130
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 126
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 127 CHS-KRVI 133
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R +++ + + + V E
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 123
Query: 217 LHSLERII 224
HS +R+I
Sbjct: 124 CHS-KRVI 130
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 120 RGRWQKNDI-VAKILAVRNCTPRVSR-------DFNEEFPKLRIFSHPNVLPVIGCVNSP 171
RG W + I V K +R ++ + F +E ++ HPN++ +
Sbjct: 36 RGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDN 95
Query: 172 PDLVVISQYMAWGSLYA-LLHEGAGIVVDFAQALRFAVDVARGMAFLHSL 220
D+ ++ + G L+ ++H+ V + A R DV +A+ H L
Sbjct: 96 TDIYLVMELCTGGELFERVVHKR---VFRESDAARIMKDVLSAVAYCHKL 142
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 120 RGRWQKNDI-VAKILAVRNCTPRVSR-------DFNEEFPKLRIFSHPNVLPVIGCVNSP 171
RG W + I V K +R ++ + F +E ++ HPN++ +
Sbjct: 19 RGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDN 78
Query: 172 PDLVVISQYMAWGSLYA-LLHEGAGIVVDFAQALRFAVDVARGMAFLHSL 220
D+ ++ + G L+ ++H+ V + A R DV +A+ H L
Sbjct: 79 TDIYLVMELCTGGELFERVVHKR---VFRESDAARIMKDVLSAVAYCHKL 125
>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
Length = 321
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 142 VSRD-FNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR+ E LR H NV+ + + D+V+I + ++ G L+ L + + +
Sbjct: 57 VSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEE- 115
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LH+ + I + L ++M+
Sbjct: 116 -EATSFIKQILDGVNYLHT--KKIAHFDLKPENIML 148
>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|E Chain E, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|C Chain C, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|B Chain B, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|F Chain F, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|D Chain D, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|H Chain H, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|G Chain G, Human Death-Associated Kinase Drp-1, Mutant S308d D40
Length = 321
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 142 VSRD-FNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR+ E LR H NV+ + + D+V+I + ++ G L+ L + + +
Sbjct: 57 VSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEE- 115
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LH+ + I + L ++M+
Sbjct: 116 -EATSFIKQILDGVNYLHT--KKIAHFDLKPENIML 148
>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
Length = 321
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 142 VSRD-FNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR+ E LR H NV+ + + D+V+I + ++ G L+ L + + +
Sbjct: 57 VSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEE- 115
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LH+ + I + L ++M+
Sbjct: 116 -EATSFIKQILDGVNYLHT--KKIAHFDLKPENIML 148
>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|D Chain D, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|E Chain E, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|F Chain F, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|G Chain G, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|H Chain H, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
Length = 321
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 142 VSRD-FNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR+ E LR H NV+ + + D+V+I + ++ G L+ L + + +
Sbjct: 57 VSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEE- 115
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LH+ + I + L ++M+
Sbjct: 116 -EATSFIKQILDGVNYLHT--KKIAHFDLKPENIML 148
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 24/162 (14%)
Query: 97 KGISLNDLSLHTKISSGPNGDTWRGRW-------QKNDIVAKILAVRNCTPRVSRDFNEE 149
K ISL+ + ++ G ++G Q + K L + P + +F E
Sbjct: 4 KEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGP-LREEFRHE 62
Query: 150 FPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALL-----HEGAGIVVD---FA 201
HPNV+ ++G V L +I Y + G L+ L H G D
Sbjct: 63 AMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVK 122
Query: 202 QALR------FAVDVARGMAFLHSLERIIPQYQLNSRHVMVY 237
AL +A GM +L S + L +R+V+VY
Sbjct: 123 SALEPPDFVHLVAQIAAGMEYLSSHHVV--HKDLATRNVLVY 162
>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|D Chain D, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|E Chain E, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|F Chain F, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|G Chain G, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|H Chain H, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
Length = 288
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 142 VSRD-FNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDF 200
VSR+ E LR H NV+ + + D+V+I + ++ G L+ L + + +
Sbjct: 57 VSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEE- 115
Query: 201 AQALRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+A F + G+ +LH+ + I + L ++M+
Sbjct: 116 -EATSFIKQILDGVNYLHT--KKIAHFDLKPENIML 148
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 30 LLQRGARVNAT-------NRGDDTPLHLAAAHGHLDIVR 61
LLQ GAR+ T N D TPL LAA G ++I R
Sbjct: 205 LLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIFR 243
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 186 LYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL 220
LY LHE V + +ALRF +A M FL++L
Sbjct: 721 LYGKLHETLKKVTEDLEALRFNTAIAALMEFLNAL 755
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 28.5 bits (62), Expect = 3.9, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 186 LYALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL 220
LY LHE V + +ALRF +A M FL++L
Sbjct: 721 LYGKLHETLKKVTEDLEALRFNTAIAALMEFLNAL 755
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 100 SLNDLSLHTKISSGPNGDTWRGRWQKNDIVAKILAVRNCTPR---VSRDFNEEFPKLRIF 156
+L D + + G G+ + R + + + + + V E
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 157 SHPNVLPVIGCVNSPPDLVVISQYMAWGSLYALLHEGAGIVVDFAQALRFAVDVARGMAF 216
HPN+L + G + + +I +Y G++Y L + + D + + ++A +++
Sbjct: 66 RHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYITELANALSY 123
Query: 217 LHS 219
HS
Sbjct: 124 CHS 126
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 109 KISSGPNGDTWRGRWQKNDIVAKILAVRNCTPRVSRDFN--EEFPKLRIFSHPNVLPVIG 166
K+ SG G+ R + + I +R + S + EE L++ HPN++ +
Sbjct: 44 KLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYD 103
Query: 167 CVNSPPDLVVISQYMAWGSLY-ALLHEGAGIVVDFAQALRFAVDVARGMAFLH 218
+ ++ + G L+ ++H VD A ++ V G+ +LH
Sbjct: 104 FFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIK---QVLSGVTYLH 153
>pdb|3IXC|A Chain A, Crystal Structure Of Hexapeptide Transferase Family
Protein From Anaplasma Phagocytophilum
Length = 191
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 38 NATNRGDDTPLHLAAAHGHLDIVRLLAVQNNQDLTKINFKDQSWLGLKTRSRDATLSRHK 97
TN D+T +H + HG I + + + ++ L + +++G+ + D + +
Sbjct: 77 EGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAV-MEE 135
Query: 98 GISLNDLSLHTKISSGPNGDTWRGRWQK 125
G L SL T+ +G+ W GR K
Sbjct: 136 GSMLAAGSLLTRGKIVKSGELWAGRPAK 163
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 128 IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQYMAWGSLY 187
+ AKI+ R + + E + H N++ + S D+V++ +Y+ G L+
Sbjct: 117 LAAKIIKTRGMKDK--EEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELF 174
Query: 188 ALLHEGAGIVVDFAQALRFAVDVARGMAFLHSL 220
+ + + + + L F + G+ +H +
Sbjct: 175 DRIIDESYNLTELDTIL-FMKQICEGIRHMHQM 206
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 155 IFSHPNVLPVIGCVNSPPDLVVISQYMAWGSL--YALLHEGAGIVVDFAQA--------- 203
I H N++ ++G L VI +Y + G+L Y E G+ + +
Sbjct: 90 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSS 149
Query: 204 ---LRFAVDVARGMAFLHSLERIIPQYQLNSRHVMV 236
+ A VARGM +L S + I L +R+V+V
Sbjct: 150 KDLVSCAYQVARGMEYLASKKCI--HRDLAARNVLV 183
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 128 IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY 180
I K+LA + R+ R E LR+ HP+++ + + S +++++ +Y
Sbjct: 47 INKKVLAKSDMQGRIER----EISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY 95
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 128 IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY 180
I K+LA + R+ R E LR+ HP+++ + + S +++++ +Y
Sbjct: 46 INKKVLAKSDMQGRIER----EISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY 94
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 128 IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY 180
I K+LA + R+ R E LR+ HP+++ + + S +++++ +Y
Sbjct: 41 INKKVLAKSDMQGRIER----EISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY 89
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 128 IVAKILAVRNCTPRVSRDFNEEFPKLRIFSHPNVLPVIGCVNSPPDLVVISQY 180
I K+LA + R+ R E LR+ HP+++ + + S +++++ +Y
Sbjct: 37 INKKVLAKSDMQGRIER----EISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,363,172
Number of Sequences: 62578
Number of extensions: 299010
Number of successful extensions: 1571
Number of sequences better than 100.0: 441
Number of HSP's better than 100.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 722
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)