BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12583
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SZ19|PSMD9_BOVIN 26S proteasome non-ATPase regulatory subunit 9 OS=Bos taurus
GN=PSMD9 PE=1 SV=1
Length = 221
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
GL DD ILEFG +N+ NF+SLQ+I S V+ + +TV+R G + +L L P + G
Sbjct: 150 GLQVDDEILEFGSVNTQNFQSLQNIGSVVQHSEGKPLNVTVMRR-GEKHQLRLVPTRWAG 208
Query: 81 QGLVGCYFL 89
+GL+GC +
Sbjct: 209 KGLLGCNII 217
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 1 MNEPLVDSEGYPRQDVDVYQ 20
MNEPLVD EGYPR DVD+YQ
Sbjct: 52 MNEPLVDCEGYPRADVDLYQ 71
>sp|O00233|PSMD9_HUMAN 26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens
GN=PSMD9 PE=1 SV=3
Length = 223
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
GL DD I+EFG +N+ NF+SL +I S V+ + +TV+R G + +L L P + G
Sbjct: 152 GLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRR-GEKHQLRLVPTRWAG 210
Query: 81 QGLVGCYFL 89
+GL+GC +
Sbjct: 211 KGLLGCNII 219
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 1 MNEPLVDSEGYPRQDVDVYQ 20
MNEPLVD EGYPR DVD+YQ
Sbjct: 52 MNEPLVDCEGYPRSDVDLYQ 71
>sp|Q9WTV5|PSMD9_RAT 26S proteasome non-ATPase regulatory subunit 9 OS=Rattus norvegicus
GN=Psmd9 PE=1 SV=1
Length = 222
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
GL DD I+EFG +N+ NF+SLQ++ + V+ + + V+R G + +L L P + G
Sbjct: 151 GLQVDDEIVEFGSVNTQNFQSLQNVGTVVQHSEGKPLNVMVIRR-GEKHQLRLTPTRWAG 209
Query: 81 QGLVGC 86
+GL+GC
Sbjct: 210 KGLLGC 215
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 1 MNEPLVDSEGYPRQDVDVYQ 20
MNEPLVD EGYPR DVD+YQ
Sbjct: 52 MNEPLVDCEGYPRADVDLYQ 71
>sp|Q9CR00|PSMD9_MOUSE 26S proteasome non-ATPase regulatory subunit 9 OS=Mus musculus
GN=Psmd9 PE=1 SV=1
Length = 222
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
GL DD I+EFG +N+ NF+S+Q++ + V+ + +TV+R G + +L L P + G
Sbjct: 151 GLQVDDEIVEFGSVNTQNFQSVQNVGTVVQHSEGKPLNVTVIR-RGEKHQLRLIPTRWAG 209
Query: 81 QGLVGCYFL 89
+GL+GC +
Sbjct: 210 KGLLGCNII 218
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 1 MNEPLVDSEGYPRQDVDVYQ 20
MNEPLVD EGYPR DVD+YQ
Sbjct: 52 MNEPLVDCEGYPRADVDLYQ 71
>sp|Q10920|PSMD9_CAEEL Probable 26S proteasome non-ATPase regulatory subunit 9
OS=Caenorhabditis elegans GN=C44B7.1 PE=1 SV=2
Length = 197
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
G KDD+I+++G ++ NF +Q++A + + I +TV+R E RL + P+ + G
Sbjct: 123 GFRKDDLIIQYGNLHHGNFNDMQEVAQITKQSEDKIIRVTVIR-ENRPVRLEICPKKWSG 181
Query: 81 QGLVGC 86
GL+GC
Sbjct: 182 PGLLGC 187
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 1 MNEPLVDSEGYPRQDVDVY 19
M+ PL+D+EGYP +DVY
Sbjct: 35 MDSPLLDAEGYPLNTIDVY 53
>sp|Q552Y8|PSMD9_DICDI Probable 26S proteasome non-ATPase regulatory subunit 9
OS=Dictyostelium discoideum GN=psmD9 PE=2 SV=1
Length = 262
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 8 SEGYPRQDVDVYQGLVKDDIILEFGPI----------NSSNFKSLQDIASTVRAGVNTDI 57
SEG P ++ +G D+I +FG + ++ N LQ IA+ VR N I
Sbjct: 174 SEGSPSDKANLKKG----DLIFQFGTVGPFFEERQVGDNLNSNHLQSIATIVRNSENKAI 229
Query: 58 PITVLRNEGTRQRLVLRPQPFEGQGLVGC 86
I + R ++ P+ + GQGL+GC
Sbjct: 230 QIKLSRGTSIISTSLI-PRKWSGQGLIGC 257
>sp|P40555|PSMD9_YEAST Probable 26S proteasome regulatory subunit p27 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NAS2 PE=1
SV=1
Length = 220
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 25 DDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP-QPFEGQGL 83
DD ++ G ++++N LQ+I V + +P+ +LR EG + L P + + G+GL
Sbjct: 154 DDKLISIGNVHAANHSKLQNIQMVVMKNEDRPLPVLLLR-EGQILKTSLTPSRNWNGRGL 212
Query: 84 VGC 86
+GC
Sbjct: 213 LGC 215
>sp|Q05930|MDM30_YEAST Mitochondrial distribution and morphology protein 30
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MDM30 PE=1 SV=1
Length = 598
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 36 SSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
S+NF + ++ STV + I I L E R+ L +P+PFEG
Sbjct: 354 SNNFHNAENFESTVLPALLEPISIQHLLTEFFRELLRCKPRPFEG 398
>sp|Q9EQJ9|MAGI3_MOUSE Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 3 OS=Mus musculus GN=Magi3 PE=1 SV=2
Length = 1476
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 20 QGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR 63
QGL K DII E N N LQ + + V D+P+ +LR
Sbjct: 614 QGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILR 657
>sp|Q83GU5|GLMM_TROWT Phosphoglucosamine mutase OS=Tropheryma whipplei (strain Twist)
GN=glmM PE=3 SV=1
Length = 453
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 37 SNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQ-----------RLVLRPQPFEGQGLVG 85
++ S+ +I V A + TD P T+L N+ R R+V+RP E +
Sbjct: 367 TDLASIMEIVPQVTANIETDDPTTLLNNKKIRHEISRIEKSLKGRVVIRPSGTEPLIRIM 426
Query: 86 CYFLNVENVER 96
LN E ER
Sbjct: 427 VEDLNPEKAER 437
>sp|Q83NS5|GLMM_TROW8 Phosphoglucosamine mutase OS=Tropheryma whipplei (strain TW08/27)
GN=glmM PE=3 SV=1
Length = 453
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 37 SNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQ-----------RLVLRPQPFEGQGLVG 85
++ S+ +I V A + TD P T+L N+ R R+V+RP E +
Sbjct: 367 TDLASIMEIVPQVTANIETDDPTTLLNNKKIRHEISRIEKSLKGRVVIRPSGTEPLIRIM 426
Query: 86 CYFLNVENVER 96
LN E ER
Sbjct: 427 VEDLNPEKAER 437
>sp|Q9JK71|MAGI3_RAT Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 3 OS=Rattus norvegicus GN=Magi3 PE=1 SV=2
Length = 1470
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 20 QGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR 63
QGL K DII E N N LQ + + V D+P+ +LR
Sbjct: 614 QGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILR 657
>sp|Q5TCQ9|MAGI3_HUMAN Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 3 OS=Homo sapiens GN=MAGI3 PE=1 SV=2
Length = 1506
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 15 DVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR 63
D QGL K DII E N N LQ + + V D+P+ +LR
Sbjct: 631 DSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILR 679
>sp|Q8EUY4|PYRE_MYCPE Orotate phosphoribosyltransferase OS=Mycoplasma penetrans (strain
HF-2) GN=pyrE PE=3 SV=1
Length = 209
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 23 VKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN 64
V+++I L F + +NFK +Q IA T AG+ ++ L N
Sbjct: 50 VRNEIALSFKELIDTNFKDVQVIAGTATAGIPHAAWVSSLMN 91
>sp|O94393|PSMD9_SCHPO Probable 26S proteasome regulatory subunit p27
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=nas2 PE=3 SV=1
Length = 213
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 34 INSSNFKSLQDIASTVRAGVNTDIPITVLRN---EGTRQ--RLVLRPQPFEGQGLVGCYF 88
++ N SL ++ + + VN + + ++R +G+ L L P ++G GL+GC+
Sbjct: 153 VHVQNVTSLSELPTFISNNVNKTLDVLLIRGYSADGSTNLVELKLTPHKWQGPGLLGCHL 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.140 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,027,623
Number of Sequences: 539616
Number of extensions: 1344602
Number of successful extensions: 3100
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3078
Number of HSP's gapped (non-prelim): 23
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)