Query psy12583
Match_columns 96
No_of_seqs 102 out of 1041
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:03:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3129|consensus 99.8 4.3E-18 9.3E-23 120.5 8.6 79 9-92 148-227 (231)
2 PF13180 PDZ_2: PDZ domain; PD 99.5 1.8E-13 4E-18 83.3 7.1 59 8-74 22-81 (82)
3 cd00991 PDZ_archaeal_metallopr 99.4 6.5E-12 1.4E-16 76.2 8.4 59 8-74 18-77 (79)
4 cd00989 PDZ_metalloprotease PD 99.4 5.3E-12 1.1E-16 75.5 7.9 60 8-75 20-79 (79)
5 cd00988 PDZ_CTP_protease PDZ d 99.3 1.6E-11 3.6E-16 74.3 7.6 61 8-76 21-84 (85)
6 TIGR02860 spore_IV_B stage IV 99.3 2.8E-11 6E-16 93.1 10.1 72 10-89 123-196 (402)
7 TIGR00054 RIP metalloprotease 99.3 2.4E-11 5.2E-16 93.6 9.7 73 8-89 211-283 (420)
8 cd00986 PDZ_LON_protease PDZ d 99.3 5.2E-11 1.1E-15 71.8 9.1 61 8-77 16-77 (79)
9 PF04495 GRASP55_65: GRASP55/6 99.3 6.6E-12 1.4E-16 84.3 5.3 75 8-89 51-128 (138)
10 PRK10779 zinc metallopeptidase 99.2 5.8E-11 1.3E-15 92.1 9.4 74 8-89 229-306 (449)
11 cd00987 PDZ_serine_protease PD 99.1 3E-10 6.6E-15 69.1 7.5 57 8-72 32-89 (90)
12 cd00990 PDZ_glycyl_aminopeptid 99.1 3.1E-10 6.7E-15 68.1 7.3 58 8-76 20-78 (80)
13 TIGR02037 degP_htrA_DO peripla 99.1 1.6E-09 3.5E-14 83.4 9.8 76 8-91 265-347 (428)
14 PRK10139 serine endoprotease; 99.0 1.6E-09 3.5E-14 84.4 8.5 61 8-76 298-359 (455)
15 TIGR01713 typeII_sec_gspC gene 99.0 2.5E-09 5.4E-14 78.2 8.1 58 8-73 199-257 (259)
16 cd00136 PDZ PDZ domain, also c 99.0 1.1E-09 2.4E-14 64.0 5.0 47 8-61 21-69 (70)
17 TIGR02038 protease_degS peripl 99.0 3.1E-09 6.8E-14 80.3 8.6 62 8-77 286-348 (351)
18 PRK10898 serine endoprotease; 99.0 4.1E-09 8.8E-14 79.8 9.0 62 8-77 287-349 (353)
19 TIGR03279 cyano_FeS_chp putati 98.9 3.7E-09 7.9E-14 82.1 7.6 68 8-89 6-74 (433)
20 PLN00049 carboxyl-terminal pro 98.9 5.4E-09 1.2E-13 80.0 8.4 63 8-76 110-172 (389)
21 PRK10779 zinc metallopeptidase 98.9 2.6E-09 5.6E-14 82.9 6.6 60 8-75 134-194 (449)
22 PRK10139 serine endoprotease; 98.9 6.3E-09 1.4E-13 81.2 7.9 57 8-73 398-454 (455)
23 TIGR00225 prc C-terminal pepti 98.9 6.3E-09 1.4E-13 77.9 7.1 62 8-75 70-131 (334)
24 PF00595 PDZ: PDZ domain (Also 98.8 9.6E-09 2.1E-13 62.0 5.3 49 8-62 33-81 (81)
25 PRK10942 serine endoprotease; 98.8 2.2E-08 4.8E-13 78.4 8.4 61 8-76 319-380 (473)
26 TIGR02037 degP_htrA_DO peripla 98.8 1.9E-08 4.1E-13 77.4 7.6 57 8-72 370-427 (428)
27 PRK10942 serine endoprotease; 98.7 3.8E-08 8.2E-13 77.2 7.8 56 9-73 417-472 (473)
28 cd00992 PDZ_signaling PDZ doma 98.6 1.3E-07 2.7E-12 56.5 5.7 48 8-61 34-81 (82)
29 COG0793 Prc Periplasmic protea 98.6 1.8E-07 3.9E-12 72.3 7.4 63 8-75 120-183 (406)
30 smart00228 PDZ Domain present 98.6 2.4E-07 5.1E-12 55.2 6.4 52 8-65 34-85 (85)
31 TIGR00054 RIP metalloprotease 98.5 1.7E-07 3.7E-12 72.4 5.6 55 8-71 136-190 (420)
32 PRK11186 carboxy-terminal prot 98.5 5.1E-07 1.1E-11 73.5 6.8 64 8-75 263-333 (667)
33 PRK09681 putative type II secr 98.4 1.6E-06 3.4E-11 64.2 7.6 51 19-73 222-273 (276)
34 COG0265 DegQ Trypsin-like seri 98.2 8.9E-06 1.9E-10 61.0 8.5 62 8-77 278-340 (347)
35 COG3480 SdrC Predicted secrete 98.2 1.5E-05 3.3E-10 60.0 8.7 77 5-89 135-214 (342)
36 PF14685 Tricorn_PDZ: Tricorn 98.2 2E-05 4.3E-10 49.3 7.9 57 8-71 28-86 (88)
37 KOG1421|consensus 97.8 0.0001 2.3E-09 60.5 8.5 60 9-77 312-371 (955)
38 KOG3834|consensus 97.7 5.5E-05 1.2E-09 58.9 5.1 74 8-89 117-194 (462)
39 COG0750 Predicted membrane-ass 97.5 0.00049 1.1E-08 51.7 7.1 61 8-76 137-209 (375)
40 KOG3553|consensus 97.4 8.8E-05 1.9E-09 47.8 2.2 39 8-51 67-105 (124)
41 KOG3209|consensus 97.4 0.00028 6.1E-09 58.2 4.7 52 8-65 786-838 (984)
42 KOG3834|consensus 97.3 0.00052 1.1E-08 53.6 5.6 78 6-91 21-101 (462)
43 COG3975 Predicted protease wit 97.3 0.00062 1.3E-08 54.4 5.9 55 8-77 470-524 (558)
44 COG3031 PulC Type II secretory 97.3 0.00094 2E-08 48.9 6.2 51 19-73 222-273 (275)
45 KOG3580|consensus 97.0 0.0018 3.9E-08 53.0 6.0 61 8-75 228-288 (1027)
46 KOG1320|consensus 96.9 0.0045 9.8E-08 49.0 7.2 60 9-76 407-467 (473)
47 KOG3580|consensus 96.8 0.0011 2.4E-08 54.2 3.4 52 8-63 437-488 (1027)
48 KOG3651|consensus 95.7 0.025 5.3E-07 43.1 5.2 52 6-63 36-88 (429)
49 KOG3605|consensus 95.6 0.048 1E-06 45.0 6.6 74 8-89 681-756 (829)
50 PF12812 PDZ_1: PDZ-like domai 95.2 0.052 1.1E-06 33.0 4.5 39 8-53 38-76 (78)
51 KOG3209|consensus 95.2 0.042 9.1E-07 45.8 5.2 52 7-65 930-982 (984)
52 KOG3532|consensus 95.1 0.047 1E-06 45.5 5.2 48 8-63 406-453 (1051)
53 KOG3550|consensus 94.4 0.12 2.6E-06 35.8 5.0 41 19-61 131-171 (207)
54 KOG1421|consensus 94.3 0.063 1.4E-06 44.8 4.1 44 22-75 786-829 (955)
55 KOG3542|consensus 93.5 0.04 8.7E-07 46.0 1.6 49 8-63 570-618 (1283)
56 KOG3552|consensus 93.5 0.13 2.9E-06 44.1 4.6 50 8-64 83-132 (1298)
57 KOG0606|consensus 93.0 0.17 3.8E-06 43.9 4.6 42 8-54 666-707 (1205)
58 KOG3551|consensus 92.5 0.23 5.1E-06 39.0 4.4 51 8-64 118-171 (506)
59 KOG0609|consensus 90.9 0.44 9.6E-06 38.5 4.5 44 19-64 161-205 (542)
60 KOG3606|consensus 90.2 0.73 1.6E-05 34.8 4.8 50 8-63 202-252 (358)
61 KOG3571|consensus 89.7 0.73 1.6E-05 37.3 4.8 40 22-63 296-338 (626)
62 KOG1892|consensus 89.4 0.64 1.4E-05 40.5 4.5 52 8-65 968-1020(1629)
63 KOG2921|consensus 88.9 0.41 8.8E-06 37.7 2.8 28 21-48 238-265 (484)
64 KOG3549|consensus 84.0 1.8 3.9E-05 33.8 4.0 43 19-63 95-138 (505)
65 KOG1738|consensus 72.1 3.6 7.7E-05 34.0 2.6 29 7-39 232-261 (638)
66 KOG3605|consensus 65.0 6.6 0.00014 33.0 2.8 41 9-54 765-805 (829)
67 COG5233 GRH1 Peripheral Golgi 59.4 28 0.00062 27.0 5.1 75 8-89 195-274 (417)
68 PF07591 PT-HINT: Pretoxin HIN 53.8 9.8 0.00021 24.9 1.7 14 21-34 76-89 (130)
69 COG0260 PepB Leucyl aminopepti 49.6 12 0.00026 30.1 1.9 24 8-36 306-329 (485)
70 COG4043 Preprotein translocase 47.3 26 0.00056 22.6 2.8 34 19-53 31-68 (111)
71 TIGR03595 Obg_CgtA_exten Obg f 46.6 13 0.00027 21.9 1.2 11 19-29 51-61 (69)
72 PF09269 DUF1967: Domain of un 45.3 13 0.00028 21.8 1.2 11 19-29 51-61 (69)
73 PF06838 Met_gamma_lyase: Meth 43.6 19 0.00042 28.3 2.1 22 21-45 92-113 (403)
74 COG3794 PetE Plastocyanin [Ene 43.0 22 0.00047 23.6 2.1 46 20-65 56-106 (128)
75 COG2230 Cfa Cyclopropane fatty 40.0 47 0.001 24.9 3.6 38 19-63 67-105 (283)
76 PRK00913 multifunctional amino 39.9 22 0.00047 28.6 2.0 24 8-36 307-330 (483)
77 PHA01511 coat protein 39.5 32 0.0007 27.0 2.8 52 15-76 258-311 (430)
78 PRK06531 yajC preprotein trans 37.3 22 0.00047 23.1 1.4 17 19-35 34-50 (113)
79 PF11253 DUF3052: Protein of u 36.9 63 0.0014 21.5 3.5 31 19-53 3-33 (127)
80 PF11874 DUF3394: Domain of un 36.8 21 0.00046 25.1 1.3 20 9-32 131-150 (183)
81 PRK05585 yajC preprotein trans 35.0 21 0.00045 22.8 1.0 17 19-35 50-66 (106)
82 TIGR00739 yajC preprotein tran 34.8 22 0.00047 21.7 1.0 17 19-35 35-51 (84)
83 cd00433 Peptidase_M17 Cytosol 34.1 29 0.00063 27.7 1.9 24 8-36 293-316 (468)
84 COG4100 Cystathionine beta-lya 33.6 39 0.00084 26.3 2.4 23 21-46 103-125 (416)
85 PF13403 Hint_2: Hint domain 33.5 38 0.00083 22.5 2.2 13 21-33 20-32 (147)
86 PRK05015 aminopeptidase B; Pro 32.3 37 0.0008 27.0 2.1 24 8-36 244-267 (424)
87 PF02353 CMAS: Mycolic acid cy 31.9 30 0.00065 25.4 1.6 27 19-52 57-83 (273)
88 COG5233 GRH1 Peripheral Golgi 31.8 29 0.00062 27.0 1.4 26 5-34 68-93 (417)
89 PRK05886 yajC preprotein trans 31.6 31 0.00068 22.3 1.4 17 19-35 36-52 (109)
90 TIGR02828 putative membrane fu 31.2 29 0.00062 23.4 1.3 11 20-30 176-186 (188)
91 TIGR03741 PRTRC_E PRTRC system 30.6 1.5E+02 0.0032 18.9 5.3 33 42-77 2-34 (104)
92 PF04014 Antitoxin-MazE: Antid 30.3 28 0.00061 18.4 0.9 12 19-30 18-29 (47)
93 PF02699 YajC: Preprotein tran 29.9 21 0.00045 21.6 0.3 18 18-35 33-50 (82)
94 PF14275 DUF4362: Domain of un 29.7 1.5E+02 0.0033 18.7 5.3 49 23-74 1-61 (98)
95 PTZ00412 leucyl aminopeptidase 29.2 40 0.00087 27.8 1.9 24 8-36 352-375 (569)
96 COG1862 YajC Preprotein transl 29.1 41 0.0009 21.2 1.6 16 20-35 42-57 (97)
97 KOG3938|consensus 29.1 29 0.00064 26.3 1.1 40 21-61 167-207 (334)
98 cd04459 Rho_CSD Rho_CSD: Rho p 29.0 38 0.00083 19.9 1.4 11 21-31 40-50 (68)
99 PRK10481 hypothetical protein; 28.1 1.9E+02 0.0042 20.8 5.1 62 6-72 8-71 (224)
100 PF00018 SH3_1: SH3 domain; I 27.5 37 0.00079 17.8 1.0 25 4-32 2-26 (48)
101 COG4585 Signal transduction hi 26.9 1.7E+02 0.0037 21.7 4.9 30 46-76 289-318 (365)
102 KOG0820|consensus 26.9 1E+02 0.0023 23.5 3.6 15 19-33 53-67 (315)
103 COG3127 Predicted ABC-type tra 26.6 28 0.0006 29.8 0.6 28 3-34 596-624 (829)
104 KOG1118|consensus 26.3 50 0.0011 25.5 1.9 28 4-35 311-338 (366)
105 KOG0953|consensus 26.3 1.3E+02 0.0029 25.2 4.4 34 20-59 353-386 (700)
106 PF07041 DUF1327: Protein of u 25.8 20 0.00043 23.2 -0.3 15 16-30 66-80 (113)
107 PRK09570 rpoH DNA-directed RNA 25.7 48 0.001 20.2 1.4 12 19-30 49-60 (79)
108 smart00326 SH3 Src homology 3 24.5 77 0.0017 16.1 2.0 25 5-33 8-32 (58)
109 PRK15030 multidrug efflux syst 24.4 47 0.001 25.4 1.5 16 17-32 348-363 (397)
110 PRK09859 multidrug efflux syst 24.3 47 0.001 25.2 1.5 15 18-32 345-359 (385)
111 PRK02290 3-dehydroquinate synt 24.3 43 0.00092 25.9 1.2 23 5-31 303-325 (344)
112 COG0030 KsgA Dimethyladenosine 24.0 1.3E+02 0.0029 22.2 3.7 30 19-55 25-54 (259)
113 PRK09578 periplasmic multidrug 23.6 49 0.0011 25.1 1.5 14 18-31 347-360 (385)
114 PF00883 Peptidase_M17: Cytoso 23.6 23 0.0005 26.9 -0.3 23 9-36 139-161 (311)
115 cd04243 AAK_AK-HSDH-like AAK_A 23.5 1.3E+02 0.0029 22.3 3.7 36 27-62 2-37 (293)
116 cd02791 MopB_CT_Nitrate-R-NapA 23.4 56 0.0012 20.2 1.5 15 19-33 46-60 (122)
117 PRK09783 copper/silver efflux 23.3 50 0.0011 25.5 1.5 19 17-35 368-386 (409)
118 TIGR00999 8a0102 Membrane Fusi 23.1 60 0.0013 22.8 1.7 16 17-32 245-260 (265)
119 KOG4060|consensus 22.6 1.5E+02 0.0033 20.5 3.5 40 21-63 113-152 (176)
120 COG0794 GutQ Predicted sugar p 22.6 2.5E+02 0.0055 20.0 4.8 42 22-65 84-125 (202)
121 PF03401 TctC: Tripartite tric 22.3 75 0.0016 23.1 2.1 46 12-60 65-110 (274)
122 PRK11556 multidrug efflux syst 21.6 57 0.0012 25.2 1.5 14 17-30 363-376 (415)
123 KOG4589|consensus 21.6 2.7E+02 0.0058 20.3 4.7 36 22-61 67-102 (232)
124 PF14604 SH3_9: Variant SH3 do 21.4 71 0.0015 17.0 1.5 13 19-31 12-24 (49)
125 PF10844 DUF2577: Protein of u 21.3 62 0.0013 20.1 1.4 16 16-31 71-86 (100)
126 PF01959 DHQS: 3-dehydroquinat 21.3 55 0.0012 25.4 1.3 23 5-31 313-335 (354)
127 TIGR01730 RND_mfp RND family e 20.8 62 0.0013 23.2 1.5 15 18-32 295-309 (322)
128 PF01568 Molydop_binding: Moly 20.4 47 0.001 20.1 0.7 13 19-31 41-53 (110)
129 PF12327 FtsZ_C: FtsZ family, 20.3 58 0.0013 20.0 1.1 32 25-56 37-68 (95)
130 cd02790 MopB_CT_Formate-Dh_H F 20.3 75 0.0016 19.3 1.6 15 19-33 46-60 (116)
131 cd04245 AAK_AKiii-YclM-BS AAK_ 20.1 1.9E+02 0.004 21.5 3.9 27 27-53 2-28 (288)
No 1
>KOG3129|consensus
Probab=99.75 E-value=4.3e-18 Score=120.47 Aligned_cols=79 Identities=35% Similarity=0.647 Sum_probs=69.3
Q ss_pred CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecCCCCeeeEEEE-
Q psy12583 9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCY- 87 (96)
Q Consensus 9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~~~~~~~lGi~- 87 (96)
++|||+ +|||+.||.|++|+++...+...+..+....+.+.++++.++|.|.+ +.+.+.++|..|.|+|+|||.
T Consensus 148 ~~SPA~----~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g-~~v~L~ltP~~W~GrGLLGC~~ 222 (231)
T KOG3129|consen 148 PGSPAD----EAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREG-QKVVLSLTPKKWQGRGLLGCNY 222 (231)
T ss_pred CCChhh----hhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCC-CEEEEEeCcccccCCcceeeee
Confidence 444555 55999999999999988777777889999999999999999999999 999999999999999999999
Q ss_pred Eecce
Q psy12583 88 FLNVE 92 (96)
Q Consensus 88 ~~~~~ 92 (96)
+.|+.
T Consensus 223 i~pi~ 227 (231)
T KOG3129|consen 223 IQPIL 227 (231)
T ss_pred ecccc
Confidence 55543
No 2
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.48 E-value=1.8e-13 Score=83.33 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=51.1
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHH-hCCCceEEEEEEeCCceEEEEEEe
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVR-AGVNTDIPITVLRNEGTRQRLVLR 74 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~-~~~g~~i~l~V~R~g~~~~~l~v~ 74 (96)
.+++||+ +|||++||.|++|||.+ +.++.++..++. ..+|.+++++|+|++ +.++++++
T Consensus 22 ~~~spA~----~aGl~~GD~I~~ing~~---v~~~~~~~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~ 81 (82)
T PF13180_consen 22 IPGSPAA----KAGLQPGDIILAINGKP---VNSSEDLVNILSKGKPGDTVTLTVLRDG-EELTVEVT 81 (82)
T ss_dssp STTSHHH----HTTS-TTEEEEEETTEE---SSSHHHHHHHHHCSSTTSEEEEEEEETT-EEEEEEEE
T ss_pred CCCCcHH----HCCCCCCcEEEEECCEE---cCCHHHHHHHHHhCCCCCEEEEEEEECC-EEEEEEEE
Confidence 5889999 99999999999999976 578888888884 567899999999999 88888775
No 3
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.36 E-value=6.5e-12 Score=76.17 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=51.3
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEe
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLR 74 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~ 74 (96)
.+++||+ ++||++||+|++|||.+ +.+|.++...+... ++.++.+++.|++ +..+++++
T Consensus 18 ~~~spa~----~aGL~~GDiI~~Ing~~---v~~~~d~~~~l~~~~~g~~v~l~v~r~g-~~~~~~~~ 77 (79)
T cd00991 18 IVGSPAE----NAVLHTGDVIYSINGTP---ITTLEDFMEALKPTKPGEVITVTVLPST-TKLTNVST 77 (79)
T ss_pred CCCChHH----hcCCCCCCEEEEECCEE---cCCHHHHHHHHhcCCCCCEEEEEEEECC-EEEEEEEE
Confidence 4789999 99999999999999966 57889999999875 5789999999999 88877765
No 4
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.36 E-value=5.3e-12 Score=75.47 Aligned_cols=60 Identities=30% Similarity=0.413 Sum_probs=52.1
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP 75 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p 75 (96)
.+++||+ ++||++||+|++|||.+ +.+|.++...++...+..+.+++.|++ +..++.+.|
T Consensus 20 ~~~s~a~----~~gl~~GD~I~~ing~~---i~~~~~~~~~l~~~~~~~~~l~v~r~~-~~~~~~l~~ 79 (79)
T cd00989 20 VPGSPAA----KAGLKAGDRILAINGQK---IKSWEDLVDAVQENPGKPLTLTVERNG-ETITLTLTP 79 (79)
T ss_pred CCCCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHHCCCceEEEEEEECC-EEEEEEecC
Confidence 4779999 99999999999999966 578899999998877788999999999 888877754
No 5
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.30 E-value=1.6e-11 Score=74.34 Aligned_cols=61 Identities=21% Similarity=0.344 Sum_probs=52.7
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccH--HHHHHHHHhCCCceEEEEEEeC-CceEEEEEEeec
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSL--QDIASTVRAGVNTDIPITVLRN-EGTRQRLVLRPQ 76 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~--~di~~~i~~~~g~~i~l~V~R~-g~~~~~l~v~p~ 76 (96)
.+++||. ++||++||+|++|||.+ +.+| .++..+++.+.+.++.+++.|+ + +..++++.|.
T Consensus 21 ~~~s~a~----~~gl~~GD~I~~vng~~---i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~-~~~~~~~~~~ 84 (85)
T cd00988 21 LPGSPAA----KAGIKAGDIIVAIDGEP---VDGLSLEDVVKLLRGKAGTKVRLTLKRGDG-EPREVTLTRL 84 (85)
T ss_pred cCCCCHH----HcCCCCCCEEEEECCEE---cCCCCHHHHHHHhcCCCCCEEEEEEEcCCC-CEEEEEEEEC
Confidence 4789999 99999999999999976 4566 8888888877788999999999 8 8888888764
No 6
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=99.29 E-value=2.8e-11 Score=93.10 Aligned_cols=72 Identities=22% Similarity=0.349 Sum_probs=63.3
Q ss_pred CCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC--CCCeeeEEEE
Q psy12583 10 GYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP--FEGQGLVGCY 87 (96)
Q Consensus 10 ~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~--~~~~~~lGi~ 87 (96)
++||+ +|||++||.|++|||.+ +.+|+++.++++...++++.++|.|++ +..++.+.|.. ..+.++||+.
T Consensus 123 ~SPAa----~AGLq~GDiIvsING~~---V~s~~DL~~iL~~~~g~~V~LtV~R~G-e~~tv~V~Pv~~~~d~~ykLGl~ 194 (402)
T TIGR02860 123 HSPGE----EAGIQIGDRILKINGEK---IKNMDDLANLINKAGGEKLTLTIERGG-KIIETVIKPVKDKEEGRYRIGLY 194 (402)
T ss_pred CCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHhCCCCeEEEEEEECC-EEEEEEEEEeeeCCCCCEEEEEE
Confidence 58999 99999999999999966 688999999999888899999999999 99999998863 2467899986
Q ss_pred Ee
Q psy12583 88 FL 89 (96)
Q Consensus 88 ~~ 89 (96)
+.
T Consensus 195 Vr 196 (402)
T TIGR02860 195 IR 196 (402)
T ss_pred EE
Confidence 64
No 7
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.29 E-value=2.4e-11 Score=93.62 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=61.9
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecCCCCeeeEEEE
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCY 87 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~~~~~~~lGi~ 87 (96)
.++|||+ +|||++||+|++|||.+ +.+|+|+.+.++.++++++.++++|+| +..+++++|......+ +|+.
T Consensus 211 ~~~SpA~----~aGL~~GD~Iv~Vng~~---V~s~~dl~~~l~~~~~~~v~l~v~R~g-~~~~~~v~~~~~~~~~-iGi~ 281 (420)
T TIGR00054 211 TPNSPAE----KAGLKEGDYIQSINGEK---LRSWTDFVSAVKENPGKSMDIKVERNG-ETLSISLTPEAKGKIG-IGIS 281 (420)
T ss_pred CCCCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHhCCCCceEEEEEECC-EEEEEEEEEcCCCceE-EEEe
Confidence 4789999 99999999999999966 678999999999888889999999999 9999999997532233 7876
Q ss_pred Ee
Q psy12583 88 FL 89 (96)
Q Consensus 88 ~~ 89 (96)
..
T Consensus 282 ~~ 283 (420)
T TIGR00054 282 PS 283 (420)
T ss_pred cc
Confidence 43
No 8
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.29 E-value=5.2e-11 Score=71.80 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=52.0
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecC
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQP 77 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~ 77 (96)
.+++||+ + ||++||.|++|||.+ +.+|+++...+.. ..+..+.+++.|++ +...+++++..
T Consensus 16 ~~~s~A~----~-gL~~GD~I~~Ing~~---v~~~~~~~~~l~~~~~~~~v~l~v~r~g-~~~~~~v~l~~ 77 (79)
T cd00986 16 VEGMPAA----G-KLKAGDHIIAVDGKP---FKEAEELIDYIQSKKEGDTVKLKVKREE-KELPEDLILKT 77 (79)
T ss_pred CCCCchh----h-CCCCCCEEEEECCEE---CCCHHHHHHHHHhCCCCCEEEEEEEECC-EEEEEEEEEec
Confidence 4789999 6 899999999999966 5788999999985 56789999999999 88888887653
No 9
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=99.28 E-value=6.6e-12 Score=84.29 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=57.9
Q ss_pred CCCCCccccccccCCCC-CCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCc-eEEEEEEeec-CCCCeeeE
Q psy12583 8 SEGYPRQDVDVYQGLVK-DDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEG-TRQRLVLRPQ-PFEGQGLV 84 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~-GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~-~~~~l~v~p~-~~~~~~~l 84 (96)
.+||||+ +|||++ .|.|+.+++.. +.+.+++.++++.+.++++.|.|.+... ..+.++++|. .|++.|+|
T Consensus 51 ~p~SPA~----~AGL~p~~DyIig~~~~~---l~~~~~l~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~WgG~GlL 123 (138)
T PF04495_consen 51 APNSPAA----KAGLEPFFDYIIGIDGGL---LDDEDDLFELVEANENKPLQLYVYNSKTDSVREVTITPSRNWGGRGLL 123 (138)
T ss_dssp -TTSHHH----HTT--TTTEEEEEETTCE-----STCHHHHHHHHTTTS-EEEEEEETTTTCEEEEEE---TTSSSSTSS
T ss_pred cCCCHHH----HCCccccccEEEEcccee---cCCHHHHHHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCCCCCCeee
Confidence 5899999 999999 69999999854 4566788899999999999999998542 6788999998 49999999
Q ss_pred EEEEe
Q psy12583 85 GCYFL 89 (96)
Q Consensus 85 Gi~~~ 89 (96)
||++.
T Consensus 124 Gc~ig 128 (138)
T PF04495_consen 124 GCHIG 128 (138)
T ss_dssp SEEEE
T ss_pred eEEec
Confidence 99986
No 10
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.24 E-value=5.8e-11 Score=92.07 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=62.8
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecCC--C--Ceee
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPF--E--GQGL 83 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~~--~--~~~~ 83 (96)
.+||||+ +|||++||+|++|||.+ +.+|+++.++++.++++++.++|+|+| +..+++++|... . ..+.
T Consensus 229 ~~~SpA~----~AGL~~GDvIl~Ing~~---V~s~~dl~~~l~~~~~~~v~l~v~R~g-~~~~~~v~~~~~~~~g~~~~~ 300 (449)
T PRK10779 229 QPNSAAS----KAGLQAGDRIVKVDGQP---LTQWQTFVTLVRDNPGKPLALEIERQG-SPLSLTLTPDSKPGNGKAEGF 300 (449)
T ss_pred CCCCHHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhCCCCEEEEEEEECC-EEEEEEEEeeeecCCCceeeE
Confidence 3679999 99999999999999966 688999999999888889999999999 999999998632 1 2466
Q ss_pred EEEEEe
Q psy12583 84 VGCYFL 89 (96)
Q Consensus 84 lGi~~~ 89 (96)
+|+...
T Consensus 301 iGi~~~ 306 (449)
T PRK10779 301 AGVVPK 306 (449)
T ss_pred EEEecc
Confidence 898754
No 11
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.14 E-value=3e-10 Score=69.09 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=47.8
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCCceEEEEE
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNEGTRQRLV 72 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g~~~~~l~ 72 (96)
.+++||. ++||++||.|++|||.+ +.+|.++..++.... +.++.+++.|++ +.+.++
T Consensus 32 ~~~s~a~----~~gl~~GD~I~~Ing~~---i~~~~~~~~~l~~~~~~~~i~l~v~r~g-~~~~~~ 89 (90)
T cd00987 32 DPGSPAA----KAGLKPGDVILAVNGKP---VKSVADLRRALAELKPGDKVTLTVLRGG-KELTVT 89 (90)
T ss_pred CCCCHHH----HcCCCcCCEEEEECCEE---CCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEee
Confidence 3689999 99999999999999976 577888888887653 789999999999 776654
No 12
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.14 E-value=3.1e-10 Score=68.07 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=46.5
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeec
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQ 76 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~ 76 (96)
.++|||+ ++||++||+|++|||.++ .+|.++ ++. ..+..+.+++.|++ +..++.+++.
T Consensus 20 ~~~s~a~----~aGl~~GD~I~~Ing~~v---~~~~~~---l~~~~~~~~v~l~v~r~g-~~~~~~v~~~ 78 (80)
T cd00990 20 RDDSPAD----KAGLVAGDELVAVNGWRV---DALQDR---LKEYQAGDPVELTVFRDD-RLIEVPLTLA 78 (80)
T ss_pred CCCChHH----HhCCCCCCEEEEECCEEh---HHHHHH---HHhcCCCCEEEEEEEECC-EEEEEEEEec
Confidence 4789999 999999999999999764 446554 443 36678999999999 8888887764
No 13
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.05 E-value=1.6e-09 Score=83.37 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=60.3
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecCC------CC
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQPF------EG 80 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~~------~~ 80 (96)
.+++||+ ++||++||+|++|||.+ +.+|.++..++.. ..+..++++|.|++ +.+++++++..+ ..
T Consensus 265 ~~~spA~----~aGL~~GDvI~~Vng~~---i~~~~~~~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~l~~~~~~~~~~~ 336 (428)
T TIGR02037 265 LPGSPAE----KAGLKAGDVILSVNGKP---ISSFADLRRAIGTLKPGKKVTLGILRKG-KEKTITVTLGASPEEQASSS 336 (428)
T ss_pred cCCCChH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEECcCCCcccccc
Confidence 4789999 99999999999999966 5788888888875 45789999999999 888888876431 11
Q ss_pred eeeEEEEEecc
Q psy12583 81 QGLVGCYFLNV 91 (96)
Q Consensus 81 ~~~lGi~~~~~ 91 (96)
...+|+.+.++
T Consensus 337 ~~~lGi~~~~l 347 (428)
T TIGR02037 337 NPFLGLTVANL 347 (428)
T ss_pred ccccceEEecC
Confidence 34578777643
No 14
>PRK10139 serine endoprotease; Provisional
Probab=99.01 E-value=1.6e-09 Score=84.43 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=54.0
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeec
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQ 76 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~ 76 (96)
.++|||+ +|||++||+|++|||.+ +.+|.++...+.. ..+..+.++|.|+| +.+++++++.
T Consensus 298 ~~~SpA~----~AGL~~GDvIl~InG~~---V~s~~dl~~~l~~~~~g~~v~l~V~R~G-~~~~l~v~~~ 359 (455)
T PRK10139 298 LPNSGSA----KAGVKAGDIITSLNGKP---LNSFAELRSRIATTEPGTKVKLGLLRNG-KPLEVEVTLD 359 (455)
T ss_pred CCCChHH----HCCCCCCCEEEEECCEE---CCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEEC
Confidence 4789999 99999999999999966 6889999988876 67889999999999 9888888775
No 15
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.99 E-value=2.5e-09 Score=78.23 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=50.0
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEE
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVL 73 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v 73 (96)
.+++||+ ++||++||.|++|||++ +.+|+++.+++.+. ++..++++|+|+| +.+++.+
T Consensus 199 ~~~s~a~----~aGLr~GDvIv~ING~~---i~~~~~~~~~l~~~~~~~~v~l~V~R~G-~~~~i~v 257 (259)
T TIGR01713 199 KDPSLFY----KSGLQDGDIAVALNGLD---LRDPEQAFQALQMLREETNLTLTVERDG-QREDIYV 257 (259)
T ss_pred CCCCHHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCeEEEEEEECC-EEEEEEE
Confidence 4578999 99999999999999966 67888888888875 5579999999999 8877765
No 16
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.98 E-value=1.1e-09 Score=63.99 Aligned_cols=47 Identities=30% Similarity=0.522 Sum_probs=40.6
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccH--HHHHHHHHhCCCceEEEEE
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSL--QDIASTVRAGVNTDIPITV 61 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~--~di~~~i~~~~g~~i~l~V 61 (96)
.+++||+ .+||++||+|++|||.++ .+| .++.++++.+.+.+++|++
T Consensus 21 ~~~s~a~----~~gl~~GD~I~~Ing~~v---~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 21 EPGSPAE----RAGLQAGDVILAVNGTDV---KNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCCCHHH----HcCCCCCCEEEEECCEEC---CCCCHHHHHHHHhhCCCCeEEEEE
Confidence 4689999 999999999999999764 555 8899999988888888876
No 17
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.98 E-value=3.1e-09 Score=80.26 Aligned_cols=62 Identities=16% Similarity=0.311 Sum_probs=53.8
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecC
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQP 77 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~ 77 (96)
.+++||+ ++||++||+|++|||++ +.+|.++.+.++. .++.++.++|.|++ +.+++.+++..
T Consensus 286 ~~~spA~----~aGL~~GDvI~~Ing~~---V~s~~dl~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~l~~ 348 (351)
T TIGR02038 286 DPNGPAA----RAGILVRDVILKYDGKD---VIGAEELMDRIAETRPGSKVMVTVLRQG-KQLELPVTIDE 348 (351)
T ss_pred CCCChHH----HCCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEecC
Confidence 4789999 99999999999999966 6788999888876 67789999999999 98888887653
No 18
>PRK10898 serine endoprotease; Provisional
Probab=98.97 E-value=4.1e-09 Score=79.78 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=53.8
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecC
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQP 77 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~ 77 (96)
.+++||+ ++||++||+|++|||++ +.+|.++.+.+.. ..+..+.++|.|++ +.+++.+++..
T Consensus 287 ~~~spA~----~aGL~~GDvI~~Ing~~---V~s~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~l~~ 349 (353)
T PRK10898 287 SPDGPAA----KAGIQVNDLIISVNNKP---AISALETMDQVAEIRPGSVIPVVVMRDD-KQLTLQVTIQE 349 (353)
T ss_pred CCCChHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEecc
Confidence 4789999 99999999999999966 5788888888876 67789999999999 98888888754
No 19
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.93 E-value=3.7e-09 Score=82.09 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=54.6
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEE-eCCceEEEEEEeecCCCCeeeEEE
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVL-RNEGTRQRLVLRPQPFEGQGLVGC 86 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~-R~g~~~~~l~v~p~~~~~~~~lGi 86 (96)
.+||||+ +|||++||+|++|||++ +.+|.|+..++. +..+.++|+ |+| +..++++.|... .-+|+
T Consensus 6 ~pgSpAe----~AGLe~GD~IlsING~~---V~Dw~D~~~~l~---~e~l~L~V~~rdG-e~~~l~Ie~~~d---edlG~ 71 (433)
T TIGR03279 6 LPGSIAE----ELGFEPGDALVSINGVA---PRDLIDYQFLCA---DEELELEVLDANG-ESHQIEIEKDLD---EDLGL 71 (433)
T ss_pred CCCCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHhc---CCcEEEEEEcCCC-eEEEEEEecCCC---CCCcE
Confidence 5799999 99999999999999966 588988887774 357899997 889 999999888642 12566
Q ss_pred EEe
Q psy12583 87 YFL 89 (96)
Q Consensus 87 ~~~ 89 (96)
.+.
T Consensus 72 ~f~ 74 (433)
T TIGR03279 72 EFT 74 (433)
T ss_pred Eec
Confidence 654
No 20
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.93 E-value=5.4e-09 Score=79.96 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=53.5
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeec
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQ 76 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~ 76 (96)
.+||||+ +|||++||+|++|||.++.++ ++.++...++...+.++.++|.|++ +..+++++..
T Consensus 110 ~~~SPA~----~aGl~~GD~Iv~InG~~v~~~-~~~~~~~~l~g~~g~~v~ltv~r~g-~~~~~~l~r~ 172 (389)
T PLN00049 110 APGGPAA----RAGIRPGDVILAIDGTSTEGL-SLYEAADRLQGPEGSSVELTLRRGP-ETRLVTLTRE 172 (389)
T ss_pred CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEee
Confidence 4789999 999999999999999886553 5678888888778899999999999 8888777653
No 21
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.93 E-value=2.6e-09 Score=82.93 Aligned_cols=60 Identities=10% Similarity=-0.016 Sum_probs=49.2
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEee
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLRP 75 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~p 75 (96)
.++|||+ +||||+||+|++|||++ +.+|+++...+... ++.+++++|.|++ +..+++++.
T Consensus 134 ~~~SpA~----kAGLk~GDvI~~vnG~~---V~~~~~l~~~v~~~~~g~~v~v~v~R~g-k~~~~~v~l 194 (449)
T PRK10779 134 APNSIAA----QAQIAPGTELKAVDGIE---TPDWDAVRLALVSKIGDESTTITVAPFG-SDQRRDKTL 194 (449)
T ss_pred CCCCHHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhhccCCceEEEEEeCC-ccceEEEEe
Confidence 4789999 99999999999999966 68889988777654 4568999999999 766555544
No 22
>PRK10139 serine endoprotease; Provisional
Probab=98.90 E-value=6.3e-09 Score=81.16 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=49.7
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEE
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVL 73 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v 73 (96)
.+++||+ ++||++||+|++|||.+ +.+|+++.+.+++++ +++.++|+|++ +.+.+.+
T Consensus 398 ~~~spA~----~aGL~~GD~I~~Ing~~---v~~~~~~~~~l~~~~-~~v~l~v~R~g-~~~~~~~ 454 (455)
T PRK10139 398 VKGSPAA----QAGLQKDDVIIGVNRDR---VNSIAEMRKVLAAKP-AIIALQIVRGN-ESIYLLL 454 (455)
T ss_pred CCCChHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhCC-CeEEEEEEECC-EEEEEEe
Confidence 3689999 99999999999999965 688999999998865 79999999999 8776654
No 23
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.88 E-value=6.3e-09 Score=77.88 Aligned_cols=62 Identities=23% Similarity=0.384 Sum_probs=49.5
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP 75 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p 75 (96)
.+++||+ +|||++||+|++|||.++.++ ++.++...++...+.++.+++.|++ +...+++++
T Consensus 70 ~~~spA~----~aGL~~GD~I~~Ing~~v~~~-~~~~~~~~l~~~~g~~v~l~v~R~g-~~~~~~v~l 131 (334)
T TIGR00225 70 FEGSPAE----KAGIKPGDKIIKINGKSVAGM-SLDDAVALIRGKKGTKVSLEILRAG-KSKPLTFTL 131 (334)
T ss_pred CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHhccCCCCCEEEEEEEeCC-CCceEEEEE
Confidence 4789999 999999999999999875443 2467777787778899999999998 655555444
No 24
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.83 E-value=9.6e-09 Score=61.96 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=41.8
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEE
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVL 62 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~ 62 (96)
.+++||+ ++||++||+|++|||+++.++ +..++.+.++...+ +++|+|+
T Consensus 33 ~~~~~a~----~~gl~~GD~Il~INg~~v~~~-~~~~~~~~l~~~~~-~v~L~V~ 81 (81)
T PF00595_consen 33 VPGSPAE----RAGLKVGDRILEINGQSVRGM-SHDEVVQLLKSASN-PVTLTVQ 81 (81)
T ss_dssp CTTSHHH----HHTSSTTEEEEEETTEESTTS-BHHHHHHHHHHSTS-EEEEEEE
T ss_pred eCCChHH----hcccchhhhhheeCCEeCCCC-CHHHHHHHHHCCCC-cEEEEEC
Confidence 4679999 999999999999999997776 66788888888765 8888874
No 25
>PRK10942 serine endoprotease; Provisional
Probab=98.82 E-value=2.2e-08 Score=78.42 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=52.3
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeec
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQ 76 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~ 76 (96)
.+++||+ +|||++||+|++|||.+ +.+|+++...+.. ..+..+.++|.|++ +.+.+.++..
T Consensus 319 ~~~SpA~----~AGL~~GDvIl~InG~~---V~s~~dl~~~l~~~~~g~~v~l~v~R~G-~~~~v~v~l~ 380 (473)
T PRK10942 319 LPNSSAA----KAGIKAGDVITSLNGKP---ISSFAALRAQVGTMPVGSKLTLGLLRDG-KPVNVNVELQ 380 (473)
T ss_pred CCCChHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHhcCCCCEEEEEEEECC-eEEEEEEEeC
Confidence 4789999 99999999999999966 6889999888875 45789999999999 8888877654
No 26
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.80 E-value=1.9e-08 Score=77.42 Aligned_cols=57 Identities=18% Similarity=0.305 Sum_probs=48.9
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEE
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLV 72 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~ 72 (96)
.++|||+ ++||++||.|++|||++ +.+|.++.++++.. .++.+.++|+|++ +...+.
T Consensus 370 ~~~SpA~----~aGL~~GDvI~~Ing~~---V~s~~d~~~~l~~~~~g~~v~l~v~R~g-~~~~~~ 427 (428)
T TIGR02037 370 VSGSPAA----RAGLQPGDVILSVNQQP---VSSVAELRKVLDRAKKGGRVALLILRGG-ATIFVT 427 (428)
T ss_pred CCCCHHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEE
Confidence 4689999 99999999999999966 67888999999874 5789999999999 766553
No 27
>PRK10942 serine endoprotease; Provisional
Probab=98.75 E-value=3.8e-08 Score=77.15 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=48.7
Q ss_pred CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEE
Q psy12583 9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVL 73 (96)
Q Consensus 9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v 73 (96)
+++||+ ++||++||+|++|||++ +.+|+++.++++.++ ..+.++|+|++ +.+.+.+
T Consensus 417 ~~S~A~----~aGL~~GDvIv~VNg~~---V~s~~dl~~~l~~~~-~~v~l~V~R~g-~~~~v~~ 472 (473)
T PRK10942 417 PGTPAA----QIGLKKGDVIIGANQQP---VKNIAELRKILDSKP-SVLALNIQRGD-SSIYLLM 472 (473)
T ss_pred CCChHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhCC-CeEEEEEEECC-EEEEEEe
Confidence 689999 99999999999999966 678899999998855 79999999999 7776654
No 28
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.62 E-value=1.3e-07 Score=56.46 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=38.6
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEE
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITV 61 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V 61 (96)
.+++||+ ++||++||+|++|||.+... .++.++...++...+ ++.+++
T Consensus 34 ~~~s~a~----~~gl~~GD~I~~ing~~i~~-~~~~~~~~~l~~~~~-~v~l~v 81 (82)
T cd00992 34 EPGGPAE----RGGLRVGDRILEVNGVSVEG-LTHEEAVELLKNSGD-EVTLTV 81 (82)
T ss_pred CCCChHH----hCCCCCCCEEEEECCEEcCc-cCHHHHHHHHHhCCC-eEEEEE
Confidence 3689999 99999999999999987533 278899999987654 666655
No 29
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=1.8e-07 Score=72.27 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=50.6
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC-ceEEEEEEee
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE-GTRQRLVLRP 75 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g-~~~~~l~v~p 75 (96)
.+|+||+ +|||++||+|++|||.+...+ ..+++...++..+|.+++|++.|.+ .+.+.++++-
T Consensus 120 ~~~~PA~----kagi~~GD~I~~IdG~~~~~~-~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~R 183 (406)
T COG0793 120 IDGSPAA----KAGIKPGDVIIKIDGKSVGGV-SLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLTR 183 (406)
T ss_pred CCCChHH----HcCCCCCCEEEEECCEEccCC-CHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEEE
Confidence 4789999 999999999999999876555 3467788999999999999999973 1445555443
No 30
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.60 E-value=2.4e-07 Score=55.22 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=38.2
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE 65 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g 65 (96)
.+++||+ ++||++||+|++|||.++.+... .+....++.. +..+.+++.|++
T Consensus 34 ~~~s~a~----~~gl~~GD~I~~In~~~v~~~~~-~~~~~~~~~~-~~~~~l~i~r~~ 85 (85)
T smart00228 34 VPGSPAA----KAGLKVGDVILEVNGTSVEGLTH-LEAVDLLKKA-GGKVTLTVLRGG 85 (85)
T ss_pred CCCCHHH----HcCCCCCCEEEEECCEECCCCCH-HHHHHHHHhC-CCeEEEEEEeCC
Confidence 4678999 99999999999999987654433 3334444443 458999999864
No 31
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.53 E-value=1.7e-07 Score=72.40 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=46.6
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEE
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRL 71 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l 71 (96)
.++|||+ +|||++||+|++|||.+ +.+|.++...+.... .++.+++.|++ +...+
T Consensus 136 ~~~SpA~----~AGL~~GDvI~~vng~~---v~~~~dl~~~ia~~~-~~v~~~I~r~g-~~~~l 190 (420)
T TIGR00054 136 DKNSIAL----EAGIEPGDEILSVNGNK---IPGFKDVRQQIADIA-GEPMVEILAER-ENWTF 190 (420)
T ss_pred CCCCHHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhhc-ccceEEEEEec-CceEe
Confidence 4689999 99999999999999965 678888888888777 68889999988 65553
No 32
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.45 E-value=5.1e-07 Score=73.54 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=48.5
Q ss_pred CCCCCcccccccc-CCCCCCEEEEEC--CeecCCcc--cHHHHHHHHHhCCCceEEEEEEeCC--ceEEEEEEee
Q psy12583 8 SEGYPRQDVDVYQ-GLVKDDIILEFG--PINSSNFK--SLQDIASTVRAGVNTDIPITVLRNE--GTRQRLVLRP 75 (96)
Q Consensus 8 ~~~~pa~~~~~~a-GLk~GD~Il~vn--g~~~~~~~--~~~di~~~i~~~~g~~i~l~V~R~g--~~~~~l~v~p 75 (96)
.+|+||+ +| ||++||+|++|| |.+..++. .++++...|+...|.+|.|+|.|++ .+.+.++++.
T Consensus 263 ipGsPA~----ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~R 333 (667)
T PRK11186 263 VAGGPAA----KSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTR 333 (667)
T ss_pred cCCChHH----HhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEEe
Confidence 4799999 98 999999999998 33222222 4568889999999999999999932 1566666654
No 33
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=98.39 E-value=1.6e-06 Score=64.19 Aligned_cols=51 Identities=22% Similarity=0.383 Sum_probs=40.4
Q ss_pred ccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEE
Q psy12583 19 YQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVL 73 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v 73 (96)
++|||+||.+++|||.+ ..+-++..+++++- ....++|+|+|+| +..++.+
T Consensus 222 ~~GLq~GDva~sING~d---L~D~~qa~~l~~~L~~~tei~ltVeRdG-q~~~i~i 273 (276)
T PRK09681 222 ASGFKEGDIAIALNQQD---FTDPRAMIALMRQLPSMDSIQLTVLRKG-ARHDISI 273 (276)
T ss_pred HcCCCCCCEEEEeCCee---CCCHHHHHHHHHHhccCCeEEEEEEECC-EEEEEEE
Confidence 67999999999999976 45556666666653 3479999999999 8877765
No 34
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=8.9e-06 Score=61.00 Aligned_cols=62 Identities=21% Similarity=0.339 Sum_probs=52.0
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEeecC
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLRPQP 77 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~p~~ 77 (96)
.+++||. ++|+++||.|+++||.. +.+..++...+..+ .|.++.+++.|++ +..++.++...
T Consensus 278 ~~~spa~----~agi~~Gdii~~vng~~---v~~~~~l~~~v~~~~~g~~v~~~~~r~g-~~~~~~v~l~~ 340 (347)
T COG0265 278 LPGSPAA----KAGIKAGDIITAVNGKP---VASLSDLVAAVASNRPGDEVALKLLRGG-KERELAVTLGD 340 (347)
T ss_pred CCCChHH----HcCCCCCCEEEEECCEE---ccCHHHHHHHHhccCCCCEEEEEEEECC-EEEEEEEEecC
Confidence 4689999 99999999999999966 56777777777654 5899999999999 88888887653
No 35
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=98.18 E-value=1.5e-05 Score=60.04 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=57.1
Q ss_pred CCCCCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEe-CCc-eEEEEEEeecCCCCe
Q psy12583 5 LVDSEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLR-NEG-TRQRLVLRPQPFEGQ 81 (96)
Q Consensus 5 ~~~~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R-~g~-~~~~l~v~p~~~~~~ 81 (96)
|.+.+++|+. . =|++||.|++|||.+ +.+.+++..++++ .+|.+++++++| ++. +..+.++.+..++++
T Consensus 135 ~~v~~~~~~~----g-kl~~gD~i~avdg~~---f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~~~~g~ 206 (342)
T COG3480 135 LSVIDNSPFK----G-KLEAGDTIIAVDGEP---FTSSDELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKNDDNGK 206 (342)
T ss_pred EEccCCcchh----c-eeccCCeEEeeCCee---cCCHHHHHHHHhccCCCCeEEEEEEeccCCCceEEEEEEeeccCCc
Confidence 4566788988 3 399999999999855 6888888888885 568999999997 551 334444444434667
Q ss_pred eeEEEEEe
Q psy12583 82 GLVGCYFL 89 (96)
Q Consensus 82 ~~lGi~~~ 89 (96)
..||+.+.
T Consensus 207 ~giGIsl~ 214 (342)
T COG3480 207 AGIGISLV 214 (342)
T ss_pred ceeeeEee
Confidence 77888775
No 36
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=98.18 E-value=2e-05 Score=49.30 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=38.0
Q ss_pred CCCCCccccccccCCC--CCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEE
Q psy12583 8 SEGYPRQDVDVYQGLV--KDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRL 71 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk--~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l 71 (96)
...||.. +.|+. +||.|++|||+++.+.. ++.+++....|+.+.|+|.+.+.+.+++
T Consensus 28 ~~~sPL~----~pGv~v~~GD~I~aInG~~v~~~~---~~~~lL~~~agk~V~Ltv~~~~~~~R~v 86 (88)
T PF14685_consen 28 NARSPLA----QPGVDVREGDYILAINGQPVTADA---NPYRLLEGKAGKQVLLTVNRKPGGARTV 86 (88)
T ss_dssp S-B-GGG----GGS----TT-EEEEETTEE-BTTB----HHHHHHTTTTSEEEEEEE-STT-EEEE
T ss_pred cccCCcc----CCCCCCCCCCEEEEECCEECCCCC---CHHHHhcccCCCEEEEEEecCCCCceEE
Confidence 3447888 77755 99999999998865544 4568899999999999999977334444
No 37
>KOG1421|consensus
Probab=97.85 E-value=0.0001 Score=60.48 Aligned_cols=60 Identities=18% Similarity=0.347 Sum_probs=52.2
Q ss_pred CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583 9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP 77 (96)
Q Consensus 9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~ 77 (96)
+++||+ +. |++||.+++||+ .-+.++..+-+++-+.-|+.++|+|+|+| +.++++++.+.
T Consensus 312 ~~gpa~----k~-Le~GDillavN~---t~l~df~~l~~iLDegvgk~l~LtI~Rgg-qelel~vtvqd 371 (955)
T KOG1421|consen 312 PEGPAE----KK-LEPGDILLAVNS---TCLNDFEALEQILDEGVGKNLELTIQRGG-QELELTVTVQD 371 (955)
T ss_pred cCCchh----hc-cCCCcEEEEEcc---eehHHHHHHHHHHhhccCceEEEEEEeCC-EEEEEEEEecc
Confidence 678999 76 999999999996 33577888888888889999999999999 99999888764
No 38
>KOG3834|consensus
Probab=97.74 E-value=5.5e-05 Score=58.92 Aligned_cols=74 Identities=16% Similarity=0.386 Sum_probs=62.2
Q ss_pred CCCCCccccccccCCC-CCCEEEEE-CCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCc-eEEEEEEeecC-CCCeee
Q psy12583 8 SEGYPRQDVDVYQGLV-KDDIILEF-GPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEG-TRQRLVLRPQP-FEGQGL 83 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk-~GD~Il~v-ng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~-~~~~l~v~p~~-~~~~~~ 83 (96)
.+++||+ .|||+ -+|-|+.+ +.+ ....+|+...|..+.++++++-|+.-.. ..++++++|.. |++++.
T Consensus 117 ~p~SPaa----lAgl~~~~DYivG~~~~~----~~~~eDl~~lIeshe~kpLklyVYN~D~d~~ReVti~pn~awGgeg~ 188 (462)
T KOG3834|consen 117 EPNSPAA----LAGLRPYTDYIVGIWDAV----MHEEEDLFTLIESHEGKPLKLYVYNHDTDSCREVTITPNSAWGGEGA 188 (462)
T ss_pred CCCCHHH----hcccccccceEecchhhh----ccchHHHHHHHHhccCCCcceeEeecCCCccceEEeeccccccccce
Confidence 4678999 99999 59999988 542 4678899999999999999999987442 57888999985 999999
Q ss_pred EEEEEe
Q psy12583 84 VGCYFL 89 (96)
Q Consensus 84 lGi~~~ 89 (96)
|||.+.
T Consensus 189 lGCgIG 194 (462)
T KOG3834|consen 189 LGCGIG 194 (462)
T ss_pred eccccc
Confidence 999875
No 39
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=97.49 E-value=0.00049 Score=51.66 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=51.0
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCce---EEEEEEe-CCceE--------EEEEEee
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTD---IPITVLR-NEGTR--------QRLVLRP 75 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~---i~l~V~R-~g~~~--------~~l~v~p 75 (96)
..++||. .+||++||+|+++|+.+ +.+|++++..+..+.+.+ +.+.+.| ++ .. ..+.+.|
T Consensus 137 ~~~s~a~----~a~l~~Gd~iv~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~P 208 (375)
T COG0750 137 APKSAAA----LAGLRPGDRIVAVDGEK---VASWDDVRRLLVAAAGDVFNLLTILVIRLDG-EAHAVAAEIIKSLGLTP 208 (375)
T ss_pred CCCCHHH----HcCCCCCCEEEeECCEE---ccCHHHHHHHHHhccCCcccceEEEEEeccc-eeeeccccceeeEeeec
Confidence 5678999 99999999999999855 688999999998887766 8999999 76 55 5667777
Q ss_pred c
Q psy12583 76 Q 76 (96)
Q Consensus 76 ~ 76 (96)
.
T Consensus 209 ~ 209 (375)
T COG0750 209 V 209 (375)
T ss_pred c
Confidence 4
No 40
>KOG3553|consensus
Probab=97.45 E-value=8.8e-05 Score=47.83 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=27.7
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA 51 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~ 51 (96)
.+||||+ .|||+.+|+|+++||-+. ++-+-..-..+|++
T Consensus 67 ~eGsPA~----~AGLrihDKIlQvNG~Df-TMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 67 SEGSPAE----IAGLRIHDKILQVNGWDF-TMVTHDQAVKRITK 105 (124)
T ss_pred ccCChhh----hhcceecceEEEecCcee-EEEEhHHHHHHhhH
Confidence 5799999 999999999999999652 22233333445544
No 41
>KOG3209|consensus
Probab=97.36 E-value=0.00028 Score=58.17 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=41.8
Q ss_pred CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583 8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE 65 (96)
Q Consensus 8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g 65 (96)
.+||||+ +-| |+.||+|++|||+.+.+.. -.|+..+|+.. |..|+|+|--.+
T Consensus 786 ieGSPAd----RCgkLkVGDrilAVNG~sI~~ls-Hadiv~LIKda-GlsVtLtIip~e 838 (984)
T KOG3209|consen 786 IEGSPAD----RCGKLKVGDRILAVNGQSILNLS-HADIVSLIKDA-GLSVTLTIIPPE 838 (984)
T ss_pred ccCChhH----hhccccccceEEEecCeeeeccC-chhHHHHHHhc-CceEEEEEcChh
Confidence 5899999 988 9999999999999877664 45777888864 678888876533
No 42
>KOG3834|consensus
Probab=97.33 E-value=0.00052 Score=53.59 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=57.5
Q ss_pred CCCCCCCccccccccCCCC-CCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCc-eEEEEEEeecC-CCCee
Q psy12583 6 VDSEGYPRQDVDVYQGLVK-DDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEG-TRQRLVLRPQP-FEGQG 82 (96)
Q Consensus 6 ~~~~~~pa~~~~~~aGLk~-GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~-~~~~l~v~p~~-~~~~~ 82 (96)
.-.++|||. +|||.+ -|.|++|||.... ++-+.|.+.++.+..+ ++++|..... ..+.++|+|.. |.+.
T Consensus 21 kVqedSpa~----~aglepffdFIvSI~g~rL~--~dnd~Lk~llk~~sek-Vkltv~n~kt~~~R~v~I~ps~~wggq- 92 (462)
T KOG3834|consen 21 KVQEDSPAH----KAGLEPFFDFIVSINGIRLN--KDNDTLKALLKANSEK-VKLTVYNSKTQEVRIVEIVPSNNWGGQ- 92 (462)
T ss_pred EeecCChHH----hcCcchhhhhhheeCccccc--CchHHHHHHHHhcccc-eEEEEEecccceeEEEEeccccccccc-
Confidence 446889999 999999 8999999996532 2334566777776655 9998886443 57777888764 7777
Q ss_pred eEEEEEecc
Q psy12583 83 LVGCYFLNV 91 (96)
Q Consensus 83 ~lGi~~~~~ 91 (96)
+||+.+...
T Consensus 93 llGvsvrFc 101 (462)
T KOG3834|consen 93 LLGVSVRFC 101 (462)
T ss_pred ccceEEEec
Confidence 899887743
No 43
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.30 E-value=0.00062 Score=54.37 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=42.7
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP 77 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~ 77 (96)
.+++||+ +|||.+||+|++|||.. ..+ -+.+.+-.|++.+.|.+ .-+++.+++..
T Consensus 470 ~~~gPA~----~AGl~~Gd~ivai~G~s----~~l------~~~~~~d~i~v~~~~~~-~L~e~~v~~~~ 524 (558)
T COG3975 470 FPGGPAY----KAGLSPGDKIVAINGIS----DQL------DRYKVNDKIQVHVFREG-RLREFLVKLGG 524 (558)
T ss_pred CCCChhH----hccCCCccEEEEEcCcc----ccc------cccccccceEEEEccCC-ceEEeecccCC
Confidence 3579999 99999999999999952 112 12356678999999999 88888777653
No 44
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.00094 Score=48.91 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=41.6
Q ss_pred ccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCC-ceEEEEEEeCCceEEEEEE
Q psy12583 19 YQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVN-TDIPITVLRNEGTRQRLVL 73 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g-~~i~l~V~R~g~~~~~l~v 73 (96)
+.|||.||.-+++|+.+ ..+-+++..+++.-.+ ..++++|+|+| +...+.+
T Consensus 222 ~sglq~GDIavaiNnld---ltdp~~m~~llq~l~~m~s~qlTv~R~G-~rhdInV 273 (275)
T COG3031 222 KSGLQRGDIAVAINNLD---LTDPEDMFRLLQMLRNMPSLQLTVIRRG-KRHDINV 273 (275)
T ss_pred hhcCCCcceEEEecCcc---cCCHHHHHHHHHhhhcCcceEEEEEecC-ccceeee
Confidence 67999999999999855 6777888888886554 58999999999 6655544
No 45
>KOG3580|consensus
Probab=97.02 E-value=0.0018 Score=52.97 Aligned_cols=61 Identities=21% Similarity=0.344 Sum_probs=47.3
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP 75 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p 75 (96)
..|-+|. .-+|+.||.|++|||+-..++ ++.|-..+|..+.| ++.+.|+|+. +..-+.+.+
T Consensus 228 ~~gLAar----dgnlqEGDiiLkINGtvteNm-SLtDar~LIEkS~G-KL~lvVlRD~-~qtLiNiP~ 288 (1027)
T KOG3580|consen 228 RTGLAAR----DGNLQEGDIILKINGTVTENM-SLTDARKLIEKSRG-KLQLVVLRDS-QQTLINIPS 288 (1027)
T ss_pred ccchhhc----cCCcccccEEEEECcEeeccc-cchhHHHHHHhccC-ceEEEEEecC-CceeeecCC
Confidence 3455666 678999999999999876665 57788888888877 6899999988 655556554
No 46
>KOG1320|consensus
Probab=96.90 E-value=0.0045 Score=49.02 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=48.9
Q ss_pred CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCCceEEEEEEeec
Q psy12583 9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNEGTRQRLVLRPQ 76 (96)
Q Consensus 9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g~~~~~l~v~p~ 76 (96)
+++|+. .+|+++||+|++|||+. +.+..++.+.++... ...+.+..+|+. +..++.+.|.
T Consensus 407 p~~~~~----~~~~~~g~~V~~vng~~---V~n~~~l~~~i~~~~~~~~v~vl~~~~~-e~~tl~Il~~ 467 (473)
T KOG1320|consen 407 PGSING----GYGLKPGDQVVKVNGKP---VKNLKHLYELIEECSTEDKVAVLDRRSA-EDATLEILPE 467 (473)
T ss_pred cCCCcc----cccccCCCEEEEECCEE---eechHHHHHHHHhcCcCceEEEEEecCc-cceeEEeccc
Confidence 577888 99999999999999977 567777888888654 247888888888 8888888876
No 47
>KOG3580|consensus
Probab=96.84 E-value=0.0011 Score=54.22 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=38.7
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR 63 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R 63 (96)
.+|+||+ +.||+.||+|++||.++..++-.-+.+.-++.--+|..|++.-.+
T Consensus 437 qegspA~----~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~ 488 (1027)
T KOG3580|consen 437 QEGSPAE----QEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQS 488 (1027)
T ss_pred ccCCchh----hccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhh
Confidence 4789999 999999999999999876666544444444555567777765554
No 48
>KOG3651|consensus
Probab=95.75 E-value=0.025 Score=43.10 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=39.3
Q ss_pred CCCCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583 6 VDSEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR 63 (96)
Q Consensus 6 ~~~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R 63 (96)
+-++++||. +-| ++.||.|++|||..++. ++-.++++.|+...+ ++.+.+-.
T Consensus 36 QvFD~tPAa----~dG~i~~GDEi~avNg~svKG-ktKveVAkmIQ~~~~-eV~IhyNK 88 (429)
T KOG3651|consen 36 QVFDKTPAA----KDGRIRCGDEIVAVNGISVKG-KTKVEVAKMIQVSLN-EVKIHYNK 88 (429)
T ss_pred EeccCCchh----ccCccccCCeeEEecceeecC-ccHHHHHHHHHHhcc-ceEEEehh
Confidence 457889999 887 99999999999987544 355678888988765 56665533
No 49
>KOG3605|consensus
Probab=95.60 E-value=0.048 Score=45.02 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=48.0
Q ss_pred CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCc-eEEEEEEeCCceEEEEEEeecCCCCeeeEE
Q psy12583 8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNT-DIPITVLRNEGTRQRLVLRPQPFEGQGLVG 85 (96)
Q Consensus 8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~-~i~l~V~R~g~~~~~l~v~p~~~~~~~~lG 85 (96)
+.+.||+ +.| |-.||+|++|||....... +..-+.+|++.+++ .|+|+|.+=- -..++.+. ++ ..+|-||
T Consensus 681 m~~GpAa----rsgkLnIGDQiiaING~SLVGLP-LstcQs~Ik~~KnQT~VkltiV~cp-PV~~V~I~-RP-d~kyQLG 752 (829)
T KOG3605|consen 681 MHGGPAA----RSGKLNIGDQIMSINGTSLVGLP-LSTCQSIIKGLKNQTAVKLNIVSCP-PVTTVLIR-RP-DLRYQLG 752 (829)
T ss_pred ccCChhh----hcCCccccceeEeecCceecccc-HHHHHHHHhcccccceEEEEEecCC-CceEEEee-cc-cchhhcc
Confidence 5678999 888 9999999999997654442 44556788876664 6777777633 33333222 22 2355666
Q ss_pred EEEe
Q psy12583 86 CYFL 89 (96)
Q Consensus 86 i~~~ 89 (96)
+..+
T Consensus 753 FSVQ 756 (829)
T KOG3605|consen 753 FSVQ 756 (829)
T ss_pred ceee
Confidence 6554
No 50
>PF12812 PDZ_1: PDZ-like domain
Probab=95.24 E-value=0.052 Score=32.99 Aligned_cols=39 Identities=23% Similarity=0.125 Sum_probs=31.4
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCC
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGV 53 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~ 53 (96)
..|+|+. +.|+..|-.|.+||++ ++.+++++.+++++-+
T Consensus 38 ~~g~~~~----~~~i~~g~iI~~Vn~k---pt~~Ld~f~~vvk~ip 76 (78)
T PF12812_consen 38 SGGSLAF----AGGISKGFIITSVNGK---PTPDLDDFIKVVKKIP 76 (78)
T ss_pred cCCChhh----hCCCCCCeEEEeECCc---CCcCHHHHHHHHHhCC
Confidence 4578888 5559999999999984 4788888888888654
No 51
>KOG3209|consensus
Probab=95.22 E-value=0.042 Score=45.85 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=36.5
Q ss_pred CCCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583 7 DSEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE 65 (96)
Q Consensus 7 ~~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g 65 (96)
-.++.||. +-| ++.||+|+.|||..-+.+..-.. .++|++. |..+ +.++|.|
T Consensus 930 lAeDGPA~----rdGrm~VGDqi~eINGesTkgmtH~rA-IelIk~g-g~~v-ll~Lr~g 982 (984)
T KOG3209|consen 930 LAEDGPAI----RDGRMRVGDQITEINGESTKGMTHDRA-IELIKQG-GRRV-LLLLRRG 982 (984)
T ss_pred eccCCCcc----ccCceeecceEEEecCcccCCCcHHHH-HHHHHhC-CeEE-EEEeccC
Confidence 36788999 888 99999999999987666654433 4677764 4444 4445544
No 52
>KOG3532|consensus
Probab=95.11 E-value=0.047 Score=45.49 Aligned_cols=48 Identities=10% Similarity=0.236 Sum_probs=37.7
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR 63 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R 63 (96)
-+|+||. ++.+++||.+++|||++ +.+.+++..+++.-.+ .+.+.+.|
T Consensus 406 ~~ns~a~----k~~~~~gdvlvai~~~p---i~s~~q~~~~~~s~~~-~~~~l~~~ 453 (1051)
T KOG3532|consen 406 EDNSLAD----KAAFKPGDVLVAINNVP---IRSERQATRFLQSTTG-DLTVLVER 453 (1051)
T ss_pred cCCChhh----HhcCCCcceEEEecCcc---chhHHHHHHHHHhccc-ceEEEEee
Confidence 3689999 99999999999999955 6777888899987766 34444444
No 53
>KOG3550|consensus
Probab=94.35 E-value=0.12 Score=35.82 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=29.0
Q ss_pred ccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEE
Q psy12583 19 YQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITV 61 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V 61 (96)
..||+.||++++|||+++..- .-+.-.+.++...| .+++.|
T Consensus 131 hgglkrgdqllsvngvsvege-~hekavellkaa~g-svklvv 171 (207)
T KOG3550|consen 131 HGGLKRGDQLLSVNGVSVEGE-HHEKAVELLKAAVG-SVKLVV 171 (207)
T ss_pred cCcccccceeEeecceeecch-hhHHHHHHHHHhcC-cEEEEE
Confidence 457999999999999875442 34455677777666 555554
No 54
>KOG1421|consensus
Probab=94.32 E-value=0.063 Score=44.76 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=32.7
Q ss_pred CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583 22 LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP 75 (96)
Q Consensus 22 Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p 75 (96)
|-.||.|+++||+-+ ....|+.++. .+.++|+|+| .++++++..
T Consensus 786 l~~gdiilsvngk~i---tr~~dl~d~~------eid~~ilrdg-~~~~ikipt 829 (955)
T KOG1421|consen 786 LGVGDIILSVNGKMI---TRLSDLHDFE------EIDAVILRDG-IEMEIKIPT 829 (955)
T ss_pred cccccEEEEecCeEE---eeehhhhhhh------hhheeeeecC-cEEEEEecc
Confidence 788999999999664 4444444321 7789999999 888887644
No 55
>KOG3542|consensus
Probab=93.52 E-value=0.04 Score=46.04 Aligned_cols=49 Identities=27% Similarity=0.325 Sum_probs=33.3
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR 63 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R 63 (96)
.+|+.|. .+||+.||+|++|||++..++. +..-.++++++ ..+.++|.-
T Consensus 570 ~pgskAa----~~GlKRgDqilEVNgQnfenis-~~KA~eiLrnn--thLtltvKt 618 (1283)
T KOG3542|consen 570 FPGSKAA----REGLKRGDQILEVNGQNFENIS-AKKAEEILRNN--THLTLTVKT 618 (1283)
T ss_pred cCCchHH----Hhhhhhhhhhhhccccchhhhh-HHHHHHHhcCC--ceEEEEEec
Confidence 4678788 8999999999999997654442 22333555543 456666654
No 56
>KOG3552|consensus
Probab=93.45 E-value=0.13 Score=44.11 Aligned_cols=50 Identities=24% Similarity=0.267 Sum_probs=38.8
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN 64 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~ 64 (96)
++|.|+. .-|++||+|++|||.+++. ..|+-+..+++.-+ ..|.++|-+.
T Consensus 83 T~GGps~-----GKL~PGDQIl~vN~Epv~d-aprervIdlvRace-~sv~ltV~qP 132 (1298)
T KOG3552|consen 83 TEGGPSI-----GKLQPGDQILAVNGEPVKD-APRERVIDLVRACE-SSVNLTVCQP 132 (1298)
T ss_pred cCCCCcc-----ccccCCCeEEEecCccccc-ccHHHHHHHHHHHh-hhcceEEecc
Confidence 5788887 3499999999999976543 46888888888754 5777888773
No 57
>KOG0606|consensus
Probab=93.01 E-value=0.17 Score=43.91 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=32.1
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCC
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVN 54 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g 54 (96)
.+|+||. .|||++||.|+.+||..+... ...+|.+++-++.+
T Consensus 666 ~egsPA~----~agls~~DlIthvnge~v~gl-~H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 666 EEGSPAF----EAGLSAGDLITHVNGEPVHGL-VHTEVMELLLKSGN 707 (1205)
T ss_pred cCCCCcc----ccCCCccceeEeccCcccchh-hHHHHHHHHHhcCC
Confidence 4789999 999999999999999765544 44566666665443
No 58
>KOG3551|consensus
Probab=92.49 E-value=0.23 Score=38.96 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEE--EEEEeC
Q psy12583 8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIP--ITVLRN 64 (96)
Q Consensus 8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~--l~V~R~ 64 (96)
++|..|+ +.| |..||.|++|||.+... .+-++-.+.++. .|+.+. +++.|+
T Consensus 118 FkGlAAD----Qt~aL~~gDaIlSVNG~dL~~-AtHdeAVqaLKr-aGkeV~levKy~RE 171 (506)
T KOG3551|consen 118 FKGLAAD----QTGALFLGDAILSVNGEDLRD-ATHDEAVQALKR-AGKEVLLEVKYMRE 171 (506)
T ss_pred ccccccc----cccceeeccEEEEecchhhhh-cchHHHHHHHHh-hCceeeeeeeeehh
Confidence 4677777 776 99999999999966432 334444556664 466654 555553
No 59
>KOG0609|consensus
Probab=90.86 E-value=0.44 Score=38.47 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=33.6
Q ss_pred ccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583 19 YQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN 64 (96)
Q Consensus 19 ~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~ 64 (96)
+.| |..||.|++|||+.+.+ ....++.++++...| .+++++.=.
T Consensus 161 r~glL~~GD~i~EvNGi~v~~-~~~~e~q~~l~~~~G-~itfkiiP~ 205 (542)
T KOG0609|consen 161 RQGLLHVGDEILEVNGISVAN-KSPEELQELLRNSRG-SITFKIIPS 205 (542)
T ss_pred hccceeeccchheecCeeccc-CCHHHHHHHHHhCCC-cEEEEEccc
Confidence 566 88999999999987554 467888899988775 666666543
No 60
>KOG3606|consensus
Probab=90.18 E-value=0.73 Score=34.77 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=36.7
Q ss_pred CCCCCccccccccCCCC-CCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583 8 SEGYPRQDVDVYQGLVK-DDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR 63 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~-GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R 63 (96)
.+|.-|+ .-||.+ +|.|++|||+.+.. ++++++..++-.+. ..+-++|+-
T Consensus 202 VpGGLAe----STGLLaVnDEVlEVNGIEVaG-KTLDQVTDMMvANs-hNLIiTVkP 252 (358)
T KOG3606|consen 202 VPGGLAE----STGLLAVNDEVLEVNGIEVAG-KTLDQVTDMMVANS-HNLIITVKP 252 (358)
T ss_pred cCCcccc----ccceeeecceeEEEcCEEecc-ccHHHHHHHHhhcc-cceEEEecc
Confidence 3677788 888655 99999999987533 67888888877654 455566654
No 61
>KOG3571|consensus
Probab=89.74 E-value=0.73 Score=37.31 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=28.6
Q ss_pred CCCCCEEEEECCeecCCcccHHHHHHHHHh---CCCceEEEEEEe
Q psy12583 22 LVKDDIILEFGPINSSNFKSLQDIASTVRA---GVNTDIPITVLR 63 (96)
Q Consensus 22 Lk~GD~Il~vng~~~~~~~~~~di~~~i~~---~~g~~i~l~V~R 63 (96)
|.+||.|++||.++..++.+-+.+ ..+++ .++ |++++|-.
T Consensus 296 Ie~GDMiLQVNevsFENmSNd~AV-rvLREaV~~~g-Pi~ltvAk 338 (626)
T KOG3571|consen 296 IEPGDMILQVNEVSFENMSNDQAV-RVLREAVSRPG-PIKLTVAK 338 (626)
T ss_pred cCccceEEEeeecchhhcCchHHH-HHHHHHhccCC-CeEEEEee
Confidence 889999999999887777665443 34443 333 78888766
No 62
>KOG1892|consensus
Probab=89.43 E-value=0.64 Score=40.50 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=38.0
Q ss_pred CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583 8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE 65 (96)
Q Consensus 8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g 65 (96)
.+|.||+ .-| |++||++++|||+....+. -++-.+++-. .|..|.|+|...|
T Consensus 968 V~GgaAd----~DGRL~aGDQLLsVdG~SLiGis-QErAA~lmtr-tg~vV~leVaKqg 1020 (1629)
T KOG1892|consen 968 VEGGAAD----HDGRLEAGDQLLSVDGHSLIGIS-QERAARLMTR-TGNVVHLEVAKQG 1020 (1629)
T ss_pred ccCCccc----cccccccCceeeeecCccccccc-HHHHHHHHhc-cCCeEEEehhhhh
Confidence 4788888 667 9999999999998766553 3344455554 4668888887755
No 63
>KOG2921|consensus
Probab=88.89 E-value=0.41 Score=37.70 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.0
Q ss_pred CCCCCCEEEEECCeecCCcccHHHHHHH
Q psy12583 21 GLVKDDIILEFGPINSSNFKSLQDIAST 48 (96)
Q Consensus 21 GLk~GD~Il~vng~~~~~~~~~~di~~~ 48 (96)
||.+||+|+++||-++.+..+|-+..+.
T Consensus 238 GL~vgdvitsldgcpV~~v~dW~ecl~t 265 (484)
T KOG2921|consen 238 GLSVGDVITSLDGCPVHKVSDWLECLAT 265 (484)
T ss_pred cCCccceEEecCCcccCCHHHHHHHHHh
Confidence 8999999999999888777777654443
No 64
>KOG3549|consensus
Probab=83.95 E-value=1.8 Score=33.80 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=31.3
Q ss_pred ccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583 19 YQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR 63 (96)
Q Consensus 19 ~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R 63 (96)
..| |-.||-|++|||..+.+- .-+++..++++ .|..++++|+.
T Consensus 95 ~tG~LFvGDAilqvNGi~v~~c-~HeevV~iLRN-AGdeVtlTV~~ 138 (505)
T KOG3549|consen 95 ITGQLFVGDAILQVNGIYVTAC-PHEEVVNILRN-AGDEVTLTVKH 138 (505)
T ss_pred hcCceEeeeeeEEeccEEeecC-ChHHHHHHHHh-cCCEEEEEeHh
Confidence 334 778999999999875443 45678888886 46677777654
No 65
>KOG1738|consensus
Probab=72.06 E-value=3.6 Score=34.02 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=23.3
Q ss_pred CCCCCCccccccccC-CCCCCEEEEECCeecCCc
Q psy12583 7 DSEGYPRQDVDVYQG-LVKDDIILEFGPINSSNF 39 (96)
Q Consensus 7 ~~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~ 39 (96)
.++++||. +-+ |.+||.|++||+..+..|
T Consensus 232 ~~e~Spad----~~~kI~dgdEv~qiN~qtvVgw 261 (638)
T KOG1738|consen 232 IFEQSPAD----YRQKILDGDEVLQINEQTVVGW 261 (638)
T ss_pred cccCChHH----HhhcccCccceeeecccccccc
Confidence 46789998 665 889999999998765544
No 66
>KOG3605|consensus
Probab=64.99 E-value=6.6 Score=33.00 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=29.8
Q ss_pred CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCC
Q psy12583 9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVN 54 (96)
Q Consensus 9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g 54 (96)
-|.-|+ +-|++.|-+|++|||+.+..+. -+.|.+++...-|
T Consensus 765 RGGIAE----RGGVRVGHRIIEINgQSVVA~p-HekIV~lLs~aVG 805 (829)
T KOG3605|consen 765 RGGIAE----RGGVRVGHRIIEINGQSVVATP-HEKIVQLLSNAVG 805 (829)
T ss_pred cccchh----ccCceeeeeEEEECCceEEecc-HHHHHHHHHHhhh
Confidence 356788 8999999999999998765443 2455666665544
No 67
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=59.35 E-value=28 Score=27.00 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=48.5
Q ss_pred CCCCCccccccccCCCC-CCEEEEECCeecCCc-ccHHHHHHHHHhCCCceEEEEEEe--CCceEEEEEEeecC-CCCee
Q psy12583 8 SEGYPRQDVDVYQGLVK-DDIILEFGPINSSNF-KSLQDIASTVRAGVNTDIPITVLR--NEGTRQRLVLRPQP-FEGQG 82 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~-GD~Il~vng~~~~~~-~~~~di~~~i~~~~g~~i~l~V~R--~g~~~~~l~v~p~~-~~~~~ 82 (96)
.+..|++ .|+|-+ -|.|.. ..++... -..-+++.+++...+.++.|.++. +. +++.+++.+.. |+..|
T Consensus 195 I~d~p~a----~a~l~PdEdyi~g--s~dg~~~~~ge~~l~Dv~es~~n~pl~Ly~yn~i~d-~~R~~T~~~~~h~g~~g 267 (417)
T COG5233 195 IQDKPPA----YALLSPDEDYIDG--SSDGQPLEIGELDLEDVNESPVNLPLSLYYYNPIDD-QERAKTERDGVHKGIVG 267 (417)
T ss_pred cCCCchh----hcccCCccccccc--CCCcccccchhhHHHHHhhcccCCceEEEEEecccc-cccceeeccCccccCcc
Confidence 4567777 799888 344432 2222222 123366677777788888888876 44 67777777764 67788
Q ss_pred eEEEEEe
Q psy12583 83 LVGCYFL 89 (96)
Q Consensus 83 ~lGi~~~ 89 (96)
.|||+.-
T Consensus 268 ~lgc~vg 274 (417)
T COG5233 268 ILGCQVG 274 (417)
T ss_pred ccccccc
Confidence 8888764
No 68
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=53.79 E-value=9.8 Score=24.88 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=9.4
Q ss_pred CCCCCCEEEEECCe
Q psy12583 21 GLVKDDIILEFGPI 34 (96)
Q Consensus 21 GLk~GD~Il~vng~ 34 (96)
-|++||+|+..+|.
T Consensus 76 ~L~~GD~L~~~~G~ 89 (130)
T PF07591_consen 76 DLKVGDRLLTADGS 89 (130)
T ss_dssp G--TTSEEEEE-SS
T ss_pred hCCCCCEEEcCCCC
Confidence 49999999999873
No 69
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=49.65 E-value=12 Score=30.11 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=19.8
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeec
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINS 36 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~ 36 (96)
.||+|.. .| .||||.|++.||+.+
T Consensus 306 ~ENm~~g----~A-~rPGDVits~~GkTV 329 (485)
T COG0260 306 VENMPSG----NA-YRPGDVITSMNGKTV 329 (485)
T ss_pred eccCCCC----CC-CCCCCeEEecCCcEE
Confidence 5777777 55 999999999999764
No 70
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.28 E-value=26 Score=22.61 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=22.4
Q ss_pred ccCCCCCCEEEEECCe----ecCCcccHHHHHHHHHhCC
Q psy12583 19 YQGLVKDDIILEFGPI----NSSNFKSLQDIASTVRAGV 53 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~----~~~~~~~~~di~~~i~~~~ 53 (96)
..++++||.|+ |||- .+..+..++.+.+.+++.+
T Consensus 31 rr~ik~GD~Ii-F~~~~l~v~V~~vr~Y~tF~~mlreep 68 (111)
T COG4043 31 RRQIKPGDKII-FNGDKLKVEVIDVRVYDTFEEMLREEP 68 (111)
T ss_pred hcCCCCCCEEE-EcCCeeEEEEEEEeehhHHHHHHHhcC
Confidence 56899999998 5532 2224456666777777643
No 71
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=46.64 E-value=13 Score=21.87 Aligned_cols=11 Identities=18% Similarity=0.214 Sum_probs=9.7
Q ss_pred ccCCCCCCEEE
Q psy12583 19 YQGLVKDDIIL 29 (96)
Q Consensus 19 ~aGLk~GD~Il 29 (96)
++|++.||.|.
T Consensus 51 ~~G~~~GD~V~ 61 (69)
T TIGR03595 51 KAGAKDGDTVR 61 (69)
T ss_pred HcCCCCCCEEE
Confidence 68999999875
No 72
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=45.27 E-value=13 Score=21.77 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=6.7
Q ss_pred ccCCCCCCEEE
Q psy12583 19 YQGLVKDDIIL 29 (96)
Q Consensus 19 ~aGLk~GD~Il 29 (96)
++|++.||.|.
T Consensus 51 ~~G~~~GD~V~ 61 (69)
T PF09269_consen 51 KAGAKEGDTVR 61 (69)
T ss_dssp TTT--TT-EEE
T ss_pred HcCCCCCCEEE
Confidence 68999999875
No 73
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=43.62 E-value=19 Score=28.28 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=12.8
Q ss_pred CCCCCCEEEEECCeecCCcccHHHH
Q psy12583 21 GLVKDDIILEFGPINSSNFKSLQDI 45 (96)
Q Consensus 21 GLk~GD~Il~vng~~~~~~~~~~di 45 (96)
=|++||+++++-|. ++++++++
T Consensus 92 ~LrpGD~ll~~tG~---PYDTL~~V 113 (403)
T PF06838_consen 92 VLRPGDELLSITGK---PYDTLEEV 113 (403)
T ss_dssp H--TT-EEEESSSS-----CCHHHH
T ss_pred cCCCCCeEEEcCCC---chhhHHHH
Confidence 48999999999984 45666544
No 74
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=42.97 E-value=22 Score=23.59 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=31.2
Q ss_pred cCCCCCCEEEEECCee-cCCcccHHHH----HHHHHhCCCceEEEEEEeCC
Q psy12583 20 QGLVKDDIILEFGPIN-SSNFKSLQDI----ASTVRAGVNTDIPITVLRNE 65 (96)
Q Consensus 20 aGLk~GD~Il~vng~~-~~~~~~~~di----~~~i~~~~g~~i~l~V~R~g 65 (96)
.=+++||.|.=+|-.. .+++..+.+. .+.+....|+..+.+++..|
T Consensus 56 v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~~~~~~~~~s~~~Tfe~~G 106 (128)
T COG3794 56 VTVKPGDTVTWVNTDSVGHNVTAVGGMDPEGSGTLKAGINESFTHTFETPG 106 (128)
T ss_pred EEECCCCEEEEEECCCCCceEEEeCCCCcccccccccCCCcceEEEecccc
Confidence 3578999999998654 4444433333 45666666778888888776
No 75
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=39.96 E-value=47 Score=24.92 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=24.7
Q ss_pred ccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCC-ceEEEEEEe
Q psy12583 19 YQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVN-TDIPITVLR 63 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g-~~i~l~V~R 63 (96)
+++|++|++++-|+. .|..++.+..+.-+ +-+-+++.+
T Consensus 67 kl~L~~G~~lLDiGC-------GWG~l~~~aA~~y~v~V~GvTlS~ 105 (283)
T COG2230 67 KLGLKPGMTLLDIGC-------GWGGLAIYAAEEYGVTVVGVTLSE 105 (283)
T ss_pred hcCCCCCCEEEEeCC-------ChhHHHHHHHHHcCCEEEEeeCCH
Confidence 569999999999986 46666655555433 333344433
No 76
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=39.94 E-value=22 Score=28.62 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=19.7
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeec
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINS 36 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~ 36 (96)
.||+|-. .| .+|||.|.+-||+.+
T Consensus 307 ~ENm~~~----~A-~rPgDVi~~~~GkTV 330 (483)
T PRK00913 307 CENMPSG----NA-YRPGDVLTSMSGKTI 330 (483)
T ss_pred eccCCCC----CC-CCCCCEEEECCCcEE
Confidence 5777777 65 999999999999753
No 77
>PHA01511 coat protein
Probab=39.45 E-value=32 Score=27.03 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=30.9
Q ss_pred cccccc--CCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeec
Q psy12583 15 DVDVYQ--GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQ 76 (96)
Q Consensus 15 ~~~~~a--GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~ 76 (96)
.+.+.| ||+.||.|. |.|++ ... .+.++.-+..-+|+|.+.- .--++++.|.
T Consensus 258 TvtvSAttGlk~GDvfT-iaGV~-----aVn---~iTK~~~g~lq~F~Vv~~v-gaT~I~I~Pa 311 (430)
T PHA01511 258 TVTLSATTGLKRGDKIS-FTGVK-----FLG---QMAKNVLAQDATFSVVRVV-DGTHVEITPK 311 (430)
T ss_pred eEEeecccCcccccEEE-Eeeee-----ecc---hhhhcccccceEEEEEEec-CCceEEEecc
Confidence 455566 999999986 44543 222 3344455566678888863 2235556664
No 78
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=37.26 E-value=22 Score=23.10 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=14.4
Q ss_pred ccCCCCCCEEEEECCee
Q psy12583 19 YQGLVKDDIILEFGPIN 35 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~~ 35 (96)
.+.|++||+|+-.+|.-
T Consensus 34 ~~sLk~GD~VvT~GGi~ 50 (113)
T PRK06531 34 LNAIQKGDEVVTIGGLY 50 (113)
T ss_pred HHhcCCCCEEEECCCcE
Confidence 34799999999999964
No 79
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=36.91 E-value=63 Score=21.50 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=20.7
Q ss_pred ccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCC
Q psy12583 19 YQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGV 53 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~ 53 (96)
+.|+++|..|.+++--. .--+++++.|....
T Consensus 3 ~LG~~~g~vVqE~g~Dd----DvD~~lr~~Ie~~~ 33 (127)
T PF11253_consen 3 KLGFKPGQVVQEFGWDD----DVDEDLREAIEDVT 33 (127)
T ss_pred ccCCCCCCEEEEeCCCc----cccHHHHHHHHHHh
Confidence 78999999999997311 12346666666433
No 80
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=36.78 E-value=21 Score=25.10 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=17.9
Q ss_pred CCCCccccccccCCCCCCEEEEEC
Q psy12583 9 EGYPRQDVDVYQGLVKDDIILEFG 32 (96)
Q Consensus 9 ~~~pa~~~~~~aGLk~GD~Il~vn 32 (96)
-||||+ ++|+.-|.+|+++-
T Consensus 131 fgS~A~----~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 131 FGSPAE----KAGIDFDWEITEVE 150 (183)
T ss_pred CCCHHH----HcCCCCCcEEEEEE
Confidence 478999 99999999999984
No 81
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=34.95 E-value=21 Score=22.80 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.4
Q ss_pred ccCCCCCCEEEEECCee
Q psy12583 19 YQGLVKDDIILEFGPIN 35 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~~ 35 (96)
...|++||+|+-.+|.-
T Consensus 50 ~~~Lk~Gd~VvT~gGi~ 66 (106)
T PRK05585 50 LSSLAKGDEVVTNGGII 66 (106)
T ss_pred HHhcCCCCEEEECCCeE
Confidence 45899999999999863
No 82
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=34.82 E-value=22 Score=21.69 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=14.4
Q ss_pred ccCCCCCCEEEEECCee
Q psy12583 19 YQGLVKDDIILEFGPIN 35 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~~ 35 (96)
.+.|++||+|+-.+|.-
T Consensus 35 ~~~L~~Gd~VvT~gGi~ 51 (84)
T TIGR00739 35 IESLKKGDKVLTIGGII 51 (84)
T ss_pred HHhCCCCCEEEECCCeE
Confidence 45799999999999863
No 83
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=34.10 E-value=29 Score=27.67 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=19.2
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeec
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINS 36 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~ 36 (96)
.||+|-. .| .+|||.|.+.||+.+
T Consensus 293 ~EN~is~----~A-~rPgDVi~s~~GkTV 316 (468)
T cd00433 293 AENMISG----NA-YRPGDVITSRSGKTV 316 (468)
T ss_pred eecCCCC----CC-CCCCCEeEeCCCcEE
Confidence 4677777 55 999999999999753
No 84
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=33.63 E-value=39 Score=26.29 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=17.8
Q ss_pred CCCCCCEEEEECCeecCCcccHHHHH
Q psy12583 21 GLVKDDIILEFGPINSSNFKSLQDIA 46 (96)
Q Consensus 21 GLk~GD~Il~vng~~~~~~~~~~di~ 46 (96)
=|++||..+.|-| .+.++++++.
T Consensus 103 ~LRpgDell~i~G---~PYDTLeevI 125 (416)
T COG4100 103 ILRPGDELLYITG---SPYDTLEEVI 125 (416)
T ss_pred ccCCCCeEEEecC---CcchhHHHHh
Confidence 3899999999987 4566666554
No 85
>PF13403 Hint_2: Hint domain
Probab=33.54 E-value=38 Score=22.54 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=11.7
Q ss_pred CCCCCCEEEEECC
Q psy12583 21 GLVKDDIILEFGP 33 (96)
Q Consensus 21 GLk~GD~Il~vng 33 (96)
-|++||+++..+|
T Consensus 20 ~L~~GD~V~T~dg 32 (147)
T PF13403_consen 20 DLRPGDRVLTRDG 32 (147)
T ss_pred ccCCCCEEEecCC
Confidence 5999999999975
No 86
>PRK05015 aminopeptidase B; Provisional
Probab=32.28 E-value=37 Score=26.98 Aligned_cols=24 Identities=17% Similarity=-0.002 Sum_probs=19.2
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeec
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINS 36 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~ 36 (96)
.||+|-. .| .|+||.|.+-||+.+
T Consensus 244 aENmisg----~A-~kpgDVIt~~nGkTV 267 (424)
T PRK05015 244 AENLISG----NA-FKLGDIITYRNGKTV 267 (424)
T ss_pred cccCCCC----CC-CCCCCEEEecCCcEE
Confidence 4677766 55 999999999999764
No 87
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=31.94 E-value=30 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=15.7
Q ss_pred ccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC
Q psy12583 19 YQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG 52 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~ 52 (96)
+++|++|++|+-|+. .|..++.++.+.
T Consensus 57 ~~~l~~G~~vLDiGc-------GwG~~~~~~a~~ 83 (273)
T PF02353_consen 57 KLGLKPGDRVLDIGC-------GWGGLAIYAAER 83 (273)
T ss_dssp TTT--TT-EEEEES--------TTSHHHHHHHHH
T ss_pred HhCCCCCCEEEEeCC-------CccHHHHHHHHH
Confidence 579999999999985 345555555443
No 88
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=31.84 E-value=29 Score=26.98 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.3
Q ss_pred CCCCCCCCccccccccCCCCCCEEEEECCe
Q psy12583 5 LVDSEGYPRQDVDVYQGLVKDDIILEFGPI 34 (96)
Q Consensus 5 ~~~~~~~pa~~~~~~aGLk~GD~Il~vng~ 34 (96)
|--.+.+||+ +||.-.||-|+.||+.
T Consensus 68 lrv~~~~~~e----~~~~~~~dyilg~n~D 93 (417)
T COG5233 68 LRVNPESPAE----KAGMVVGDYILGINED 93 (417)
T ss_pred eeccccChhH----hhccccceeEEeecCC
Confidence 4456779999 9999999999999974
No 89
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=31.57 E-value=31 Score=22.26 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=14.6
Q ss_pred ccCCCCCCEEEEECCee
Q psy12583 19 YQGLVKDDIILEFGPIN 35 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~~ 35 (96)
.+.|++||+|+-.+|.-
T Consensus 36 ~~~Lk~GD~VvT~gGi~ 52 (109)
T PRK05886 36 HESLQPGDRVHTTSGLQ 52 (109)
T ss_pred HHhcCCCCEEEECCCeE
Confidence 35799999999999974
No 90
>TIGR02828 putative membrane fusion protein. Members of this family show similarity to the members of TIGR00999, the membrane fusion protein (MFP) cluster 2 family, which is linked to RND transport systems.
Probab=31.20 E-value=29 Score=23.39 Aligned_cols=11 Identities=27% Similarity=0.139 Sum_probs=9.3
Q ss_pred cCCCCCCEEEE
Q psy12583 20 QGLVKDDIILE 30 (96)
Q Consensus 20 aGLk~GD~Il~ 30 (96)
.||++||+|+.
T Consensus 176 ~GL~~GD~Vv~ 186 (188)
T TIGR02828 176 EGDKPPDAQLL 186 (188)
T ss_pred ecCCCCCEEEe
Confidence 49999999984
No 91
>TIGR03741 PRTRC_E PRTRC system protein E. A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.
Probab=30.55 E-value=1.5e+02 Score=18.93 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583 42 LQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP 77 (96)
Q Consensus 42 ~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~ 77 (96)
|..|...+... ..+.+.+...+ ..+.+++.|..
T Consensus 2 F~~i~~l~~~~--~~l~l~i~~~~-d~l~V~v~P~~ 34 (104)
T TIGR03741 2 FQALHPLLTAA--TKLTVSLTAVG-DKLTVTVTPTP 34 (104)
T ss_pred hHHHHHHHHhC--CceEEEEEcCC-CEEEEEEeecc
Confidence 44555555543 34899999999 89999999974
No 92
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=30.28 E-value=28 Score=18.44 Aligned_cols=12 Identities=25% Similarity=0.122 Sum_probs=7.3
Q ss_pred ccCCCCCCEEEE
Q psy12583 19 YQGLVKDDIILE 30 (96)
Q Consensus 19 ~aGLk~GD~Il~ 30 (96)
+.||++||.|.-
T Consensus 18 ~l~l~~Gd~v~i 29 (47)
T PF04014_consen 18 KLGLKPGDEVEI 29 (47)
T ss_dssp HTTSSTTTEEEE
T ss_pred HcCCCCCCEEEE
Confidence 456667766653
No 93
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=29.94 E-value=21 Score=21.60 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=1.6
Q ss_pred cccCCCCCCEEEEECCee
Q psy12583 18 VYQGLVKDDIILEFGPIN 35 (96)
Q Consensus 18 ~~aGLk~GD~Il~vng~~ 35 (96)
..+.|++||+|+-.+|.-
T Consensus 33 m~~~Lk~Gd~VvT~gGi~ 50 (82)
T PF02699_consen 33 MLASLKPGDEVVTIGGIY 50 (82)
T ss_dssp GGG---------------
T ss_pred HHHcCCCCCEEEECCcEE
Confidence 356799999999999853
No 94
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=29.66 E-value=1.5e+02 Score=18.70 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=27.3
Q ss_pred CCCCEEEEECCeecCCcccHHHHHHHHHhC------------CCceEEEEEEeCCceEEEEEEe
Q psy12583 23 VKDDIILEFGPINSSNFKSLQDIASTVRAG------------VNTDIPITVLRNEGTRQRLVLR 74 (96)
Q Consensus 23 k~GD~Il~vng~~~~~~~~~~di~~~i~~~------------~g~~i~l~V~R~g~~~~~l~v~ 74 (96)
+.||.|.+-+. +.+...|.++.+-+..+ .|.|+-..+.-+| ..+.+++.
T Consensus 1 ~~~DVi~~~~~--i~Nl~kl~~Fi~nv~~~k~d~IrIv~yT~EGdPI~~~L~~~G-~~I~y~~D 61 (98)
T PF14275_consen 1 KNNDVINKHGE--IENLDKLDQFIENVEQGKPDKIRIVQYTIEGDPIFQDLEYDG-NQIKYTSD 61 (98)
T ss_pred CCCCEEEeCCe--EEeHHHHHHHHHHHhcCCCCEEEEEEecCCCCCEEEEEEECC-CEEEEEEC
Confidence 46898888332 34555566555555533 3445555555566 55555443
No 95
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=29.20 E-value=40 Score=27.77 Aligned_cols=24 Identities=13% Similarity=-0.021 Sum_probs=19.7
Q ss_pred CCCCCccccccccCCCCCCEEEEECCeec
Q psy12583 8 SEGYPRQDVDVYQGLVKDDIILEFGPINS 36 (96)
Q Consensus 8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~ 36 (96)
.||+|-. .| .++||.|.+.||..+
T Consensus 352 aENm~sg----~A-~rPGDVits~nGkTV 375 (569)
T PTZ00412 352 AENAIGP----ES-YHPSSIITSRKGLTV 375 (569)
T ss_pred hhcCCCC----CC-CCCCCEeEecCCCEE
Confidence 5777777 55 999999999999763
No 96
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=29.08 E-value=41 Score=21.23 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.8
Q ss_pred cCCCCCCEEEEECCee
Q psy12583 20 QGLVKDDIILEFGPIN 35 (96)
Q Consensus 20 aGLk~GD~Il~vng~~ 35 (96)
..|++||+|+-.+|.-
T Consensus 42 ~sL~kGD~VvT~gGi~ 57 (97)
T COG1862 42 NSLKKGDEVVTIGGIV 57 (97)
T ss_pred HhccCCCEEEEcCCeE
Confidence 3699999999999964
No 97
>KOG3938|consensus
Probab=29.06 E-value=29 Score=26.25 Aligned_cols=40 Identities=8% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEE
Q psy12583 21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITV 61 (96)
Q Consensus 21 GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V 61 (96)
-++.||.|-+|||.++.....+ +++..+++-+ |++.++..
T Consensus 167 ~i~VGd~IEaiNge~ivG~RHY-eVArmLKel~rge~ftlrL 207 (334)
T KOG3938|consen 167 AICVGDHIEAINGESIVGKRHY-EVARMLKELPRGETFTLRL 207 (334)
T ss_pred heeHHhHHHhhcCccccchhHH-HHHHHHHhcccCCeeEEEe
Confidence 3889999999999775544333 6778887643 34444443
No 98
>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Probab=29.00 E-value=38 Score=19.91 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=9.8
Q ss_pred CCCCCCEEEEE
Q psy12583 21 GLVKDDIILEF 31 (96)
Q Consensus 21 GLk~GD~Il~v 31 (96)
||+.||.|...
T Consensus 40 ~LR~GD~V~G~ 50 (68)
T cd04459 40 NLRTGDTVVGQ 50 (68)
T ss_pred CCCCCCEEEEE
Confidence 99999999864
No 99
>PRK10481 hypothetical protein; Provisional
Probab=28.07 E-value=1.9e+02 Score=20.84 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=41.3
Q ss_pred CCCCCCCcccc--ccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEE
Q psy12583 6 VDSEGYPRQDV--DVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLV 72 (96)
Q Consensus 6 ~~~~~~pa~~~--~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~ 72 (96)
+|.=.+|+.|+ ++..=|..+ .|..++-.++ . +-+++.+.+.-.+|..+-++.+||| +...++
T Consensus 8 vTIGq~Pr~dv~p~i~~~l~~~-~i~~~g~Ld~--l-~~~ei~~~~ap~~~~~~lvtrL~dG-~~v~~s 71 (224)
T PRK10481 8 LTIGQSPRSDVLPLLTEYLDED-EITHAGLLDG--L-SREEIMAAYAPEAGEDVLVTRLNDG-QQVHVS 71 (224)
T ss_pred EEecCCCcchhhHHHHHhcCCc-ceEEecccCC--C-CHHHHHHhcCCCCCCceeEEEecCC-CEEEEE
Confidence 34445777755 344435555 9999876443 2 4567766666677889999999999 666654
No 100
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=27.53 E-value=37 Score=17.79 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=15.8
Q ss_pred CCCCCCCCCccccccccCCCCCCEEEEEC
Q psy12583 4 PLVDSEGYPRQDVDVYQGLVKDDIILEFG 32 (96)
Q Consensus 4 ~~~~~~~~pa~~~~~~aGLk~GD~Il~vn 32 (96)
+|-+......+ +..+++||.|.=++
T Consensus 2 Alydf~~~~~~----eLs~~~Gd~i~v~~ 26 (48)
T PF00018_consen 2 ALYDFDAEDPD----ELSFKKGDIIEVLE 26 (48)
T ss_dssp ESSCBETSSTT----BSEB-TTEEEEEEE
T ss_pred CCeeeCCCCCC----EEeEECCCEEEEEE
Confidence 34555555566 56788888887764
No 101
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=26.94 E-value=1.7e+02 Score=21.74 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=21.9
Q ss_pred HHHHHhCCCceEEEEEEeCCceEEEEEEeec
Q psy12583 46 ASTVRAGVNTDIPITVLRNEGTRQRLVLRPQ 76 (96)
Q Consensus 46 ~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~ 76 (96)
+.+++......+.+++.+.+ ..+.++|.-+
T Consensus 289 tN~~rHa~A~~v~V~l~~~~-~~l~l~V~Dn 318 (365)
T COG4585 289 TNAIRHAQATEVRVTLERTD-DELRLEVIDN 318 (365)
T ss_pred HHHHhccCCceEEEEEEEcC-CEEEEEEEEC
Confidence 34445556688999999988 7788887654
No 102
>KOG0820|consensus
Probab=26.94 E-value=1e+02 Score=23.48 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=13.8
Q ss_pred ccCCCCCCEEEEECC
Q psy12583 19 YQGLVKDDIILEFGP 33 (96)
Q Consensus 19 ~aGLk~GD~Il~vng 33 (96)
+|.++++|.+++||.
T Consensus 53 ka~~k~tD~VLEvGP 67 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGP 67 (315)
T ss_pred ccCCCCCCEEEEeCC
Confidence 678999999999986
No 103
>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.57 E-value=28 Score=29.78 Aligned_cols=28 Identities=25% Similarity=0.118 Sum_probs=23.1
Q ss_pred CCCCCCCCCCccccccccCCCCCCEEE-EECCe
Q psy12583 3 EPLVDSEGYPRQDVDVYQGLVKDDIIL-EFGPI 34 (96)
Q Consensus 3 ~~~~~~~~~pa~~~~~~aGLk~GD~Il-~vng~ 34 (96)
+|++.++..-|+ +.|||-||+++ .|+|+
T Consensus 596 ~P~VS~e~~~A~----~LglKLGDtvTf~v~gq 624 (829)
T COG3127 596 EPEVSMEEGEAK----RLGLKLGDTVTFMVLGQ 624 (829)
T ss_pred CCccchhHhHHH----HhCCccCCEEEEEeccc
Confidence 588999999999 99999999986 34443
No 104
>KOG1118|consensus
Probab=26.32 E-value=50 Score=25.50 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=20.3
Q ss_pred CCCCCCCCCccccccccCCCCCCEEEEECCee
Q psy12583 4 PLVDSEGYPRQDVDVYQGLVKDDIILEFGPIN 35 (96)
Q Consensus 4 ~~~~~~~~pa~~~~~~aGLk~GD~Il~vng~~ 35 (96)
+|.|++.-.-. +.|++.||.|.-.+-++
T Consensus 311 alYdFepenEg----EL~fkeGDlI~l~~QId 338 (366)
T KOG1118|consen 311 ALYDFEPENEG----ELDFKEGDLITLTNQID 338 (366)
T ss_pred eeeccCCCCCC----ccCcccCceeeehhhcC
Confidence 35566665555 67999999999887543
No 105
>KOG0953|consensus
Probab=26.27 E-value=1.3e+02 Score=25.22 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=23.1
Q ss_pred cCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEE
Q psy12583 20 QGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPI 59 (96)
Q Consensus 20 aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l 59 (96)
.+|++||.|++|-- ++.-+++..|..+.++..-+
T Consensus 353 ~nlk~GDCvV~FSk------k~I~~~k~kIE~~g~~k~aV 386 (700)
T KOG0953|consen 353 SNLKPGDCVVAFSK------KDIFTVKKKIEKAGNHKCAV 386 (700)
T ss_pred ccCCCCCeEEEeeh------hhHHHHHHHHHHhcCcceEE
Confidence 47999999999963 23445667777666554443
No 106
>PF07041 DUF1327: Protein of unknown function (DUF1327); InterPro: IPR009759 This entry is represented by Bacteriophage ES18, Gp24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial proteins of around 115 residues in length, which seem to be specific to Escherichia coli. The function of this family is unknown.
Probab=25.84 E-value=20 Score=23.20 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=11.8
Q ss_pred cccccCCCCCCEEEE
Q psy12583 16 VDVYQGLVKDDIILE 30 (96)
Q Consensus 16 ~~~~aGLk~GD~Il~ 30 (96)
.||++||..||.-+.
T Consensus 66 ~DIAaglceg~e~l~ 80 (113)
T PF07041_consen 66 MDIAAGLCEGDEPLP 80 (113)
T ss_pred HHHHHhhcccCCCCc
Confidence 378899999997653
No 107
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=25.68 E-value=48 Score=20.21 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=9.0
Q ss_pred ccCCCCCCEEEE
Q psy12583 19 YQGLVKDDIILE 30 (96)
Q Consensus 19 ~aGLk~GD~Il~ 30 (96)
..|+++||.|-=
T Consensus 49 ~~g~k~GdVvkI 60 (79)
T PRK09570 49 AIGAKPGDVIKI 60 (79)
T ss_pred hcCCCCCCEEEE
Confidence 558999987754
No 108
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=24.51 E-value=77 Score=16.09 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=15.7
Q ss_pred CCCCCCCCccccccccCCCCCCEEEEECC
Q psy12583 5 LVDSEGYPRQDVDVYQGLVKDDIILEFGP 33 (96)
Q Consensus 5 ~~~~~~~pa~~~~~~aGLk~GD~Il~vng 33 (96)
|.+....... ..-|++||.|.-+..
T Consensus 8 ~~~~~~~~~~----~l~~~~Gd~v~v~~~ 32 (58)
T smart00326 8 LYDYTAQDPD----ELSFKKGDIITVLEK 32 (58)
T ss_pred eeeeCCCCCC----CCCCCCCCEEEEEEc
Confidence 4444444444 456888998887753
No 109
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=24.40 E-value=47 Score=25.40 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=12.3
Q ss_pred ccccCCCCCCEEEEEC
Q psy12583 17 DVYQGLVKDDIILEFG 32 (96)
Q Consensus 17 ~~~aGLk~GD~Il~vn 32 (96)
-|..||++||+|+.=+
T Consensus 348 ~V~~GL~~Gd~VVv~G 363 (397)
T PRK15030 348 LVTEGLKAGDRVVISG 363 (397)
T ss_pred EEeCCCCCCCEEEECC
Confidence 3567999999999643
No 110
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=24.27 E-value=47 Score=25.20 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=11.8
Q ss_pred cccCCCCCCEEEEEC
Q psy12583 18 VYQGLVKDDIILEFG 32 (96)
Q Consensus 18 ~~aGLk~GD~Il~vn 32 (96)
|..||++||+|+--+
T Consensus 345 V~~GL~~Gd~VV~~g 359 (385)
T PRK09859 345 VTSGLQAGDRVIVSG 359 (385)
T ss_pred EeCCCCCCCEEEEcC
Confidence 567999999998643
No 111
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=24.26 E-value=43 Score=25.92 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=17.2
Q ss_pred CCCCCCCCccccccccCCCCCCEEEEE
Q psy12583 5 LVDSEGYPRQDVDVYQGLVKDDIILEF 31 (96)
Q Consensus 5 ~~~~~~~pa~~~~~~aGLk~GD~Il~v 31 (96)
|++.+|.|-. -..||+||+|+--
T Consensus 303 lv~~dG~~vs----Vt~Lk~GD~VL~~ 325 (344)
T PRK02290 303 LVTPDGKPVS----VVDLKPGDEVLGY 325 (344)
T ss_pred EECCCCCEee----eeecCCCCEEEEE
Confidence 4555677777 6789999999863
No 112
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.98 E-value=1.3e+02 Score=22.19 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=19.9
Q ss_pred ccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCc
Q psy12583 19 YQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNT 55 (96)
Q Consensus 19 ~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~ 55 (96)
.++++++|.|++||. ....+.+.+-+...+
T Consensus 25 ~a~~~~~d~VlEIGp-------G~GaLT~~Ll~~~~~ 54 (259)
T COG0030 25 AANISPGDNVLEIGP-------GLGALTEPLLERAAR 54 (259)
T ss_pred hcCCCCCCeEEEECC-------CCCHHHHHHHhhcCe
Confidence 567889999999984 233445555555443
No 113
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=23.64 E-value=49 Score=25.06 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=11.2
Q ss_pred cccCCCCCCEEEEE
Q psy12583 18 VYQGLVKDDIILEF 31 (96)
Q Consensus 18 ~~aGLk~GD~Il~v 31 (96)
|..||++||+|+.=
T Consensus 347 V~~GL~~Gd~VV~~ 360 (385)
T PRK09578 347 VTRGLAGGERVIVD 360 (385)
T ss_pred EecCCCCCCEEEEc
Confidence 56799999998863
No 114
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=23.63 E-value=23 Score=26.89 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=15.3
Q ss_pred CCCCccccccccCCCCCCEEEEECCeec
Q psy12583 9 EGYPRQDVDVYQGLVKDDIILEFGPINS 36 (96)
Q Consensus 9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~ 36 (96)
||+|-. .| .++||.|.+.||..+
T Consensus 139 EN~i~~----~a-~~pgDVi~s~~GkTV 161 (311)
T PF00883_consen 139 ENMISG----NA-YRPGDVITSMNGKTV 161 (311)
T ss_dssp EE--ST----TS-TTTTEEEE-TTS-EE
T ss_pred cccCCC----CC-CCCCCEEEeCCCCEE
Confidence 566666 55 999999999999754
No 115
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=23.49 E-value=1.3e+02 Score=22.30 Aligned_cols=36 Identities=14% Similarity=0.376 Sum_probs=23.5
Q ss_pred EEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEE
Q psy12583 27 IILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVL 62 (96)
Q Consensus 27 ~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~ 62 (96)
+|.+|+|..+.+...|..+.+++..+.+.++-+.|.
T Consensus 2 ~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~vvVvS 37 (293)
T cd04243 2 KVLKFGGTSVASAERIRRVADIIKSRASSPVLVVVS 37 (293)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 578999977666666777777887653434444443
No 116
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=23.42 E-value=56 Score=20.17 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=12.5
Q ss_pred ccCCCCCCEEEEECC
Q psy12583 19 YQGLVKDDIILEFGP 33 (96)
Q Consensus 19 ~aGLk~GD~Il~vng 33 (96)
+.||+.||.|.-.++
T Consensus 46 ~lgi~~Gd~V~v~~~ 60 (122)
T cd02791 46 RLGLKEGDLVRVTSR 60 (122)
T ss_pred HcCCCCCCEEEEEcC
Confidence 579999999987665
No 117
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=23.31 E-value=50 Score=25.53 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=14.4
Q ss_pred ccccCCCCCCEEEEECCee
Q psy12583 17 DVYQGLVKDDIILEFGPIN 35 (96)
Q Consensus 17 ~~~aGLk~GD~Il~vng~~ 35 (96)
-|..||++||+|+.=+...
T Consensus 368 ~I~~GL~~Gd~VV~~G~~~ 386 (409)
T PRK09783 368 AIRSGLAEGEKVVSSGLFL 386 (409)
T ss_pred EEccCCCCCCEEEEeCcee
Confidence 3567999999999766433
No 118
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=23.08 E-value=60 Score=22.77 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=12.6
Q ss_pred ccccCCCCCCEEEEEC
Q psy12583 17 DVYQGLVKDDIILEFG 32 (96)
Q Consensus 17 ~~~aGLk~GD~Il~vn 32 (96)
-|..||++||+|+.-|
T Consensus 245 ~I~~gL~~gd~vv~~g 260 (265)
T TIGR00999 245 EVLEGLKPGERVAVEN 260 (265)
T ss_pred EEecCCCCCCEEEEcC
Confidence 3567999999998754
No 119
>KOG4060|consensus
Probab=22.59 E-value=1.5e+02 Score=20.50 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=28.6
Q ss_pred CCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583 21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR 63 (96)
Q Consensus 21 GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R 63 (96)
-|-.=|++++++|+.. ..+..+.++++.+--.-+.+.|.-
T Consensus 113 ~ltTyeRvvqls~v~A---p~~~~Fl~iiqa~lPeGV~l~VkE 152 (176)
T KOG4060|consen 113 VLTTYERVVQLSGVSA---PFAEIFLEIIQASLPEGVRLSVKE 152 (176)
T ss_pred hhhhhhheeeecccCc---hhHHHHHHHHHHhCCcceEEEeee
Confidence 4666789999999763 457778899988755556666653
No 120
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=22.55 E-value=2.5e+02 Score=20.00 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=27.9
Q ss_pred CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583 22 LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE 65 (96)
Q Consensus 22 Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g 65 (96)
|.++|.++.|=+ .-.....-.+..+.++...+-+-+|-..+.
T Consensus 84 i~~~DvviaiS~--SGeT~el~~~~~~aK~~g~~liaiT~~~~S 125 (202)
T COG0794 84 ITPGDVVIAISG--SGETKELLNLAPKAKRLGAKLIAITSNPDS 125 (202)
T ss_pred CCCCCEEEEEeC--CCcHHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 899999999964 223345556667777766666667655543
No 121
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=22.29 E-value=75 Score=23.08 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=32.1
Q ss_pred CccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEE
Q psy12583 12 PRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPIT 60 (96)
Q Consensus 12 pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~ 60 (96)
|.+|+..-+.+-....++.++. ..++++|+|+.++.+++++ ++.+-
T Consensus 65 ~~~df~pv~~~~~~~~vl~v~~--dsp~~t~~eli~~ak~~p~-~~~~g 110 (274)
T PF03401_consen 65 PLDDFTPVARIASDPNVLVVRA--DSPYKTLEELIEYAKANPG-KLTFG 110 (274)
T ss_dssp TTTSEEEEEEEEEEEEEEEEET--TSS-SSHHHHHHHHHCSCC-C-EEE
T ss_pred hhhhhheehhhhccceEEEEeC--CCccccHHHHHHHHHhCCC-CeEEE
Confidence 3556666666666677788865 4678999999999999876 44443
No 122
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=21.60 E-value=57 Score=25.23 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=11.3
Q ss_pred ccccCCCCCCEEEE
Q psy12583 17 DVYQGLVKDDIILE 30 (96)
Q Consensus 17 ~~~aGLk~GD~Il~ 30 (96)
-|..||++||+|+.
T Consensus 363 ~I~~GL~~Gd~VV~ 376 (415)
T PRK11556 363 VISAGLSAGDRVVT 376 (415)
T ss_pred EEECCCCCCCEEEE
Confidence 35679999999875
No 123
>KOG4589|consensus
Probab=21.56 E-value=2.7e+02 Score=20.28 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=22.5
Q ss_pred CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEE
Q psy12583 22 LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITV 61 (96)
Q Consensus 22 Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V 61 (96)
|++||+|+-++--+ .+|.++...-.+..|.-+-+.+
T Consensus 67 l~p~~~VlD~G~AP----GsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAP----GSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCC----ChHHHHHHHhhCCCceEEEEee
Confidence 88999999998533 4898876443333333333333
No 124
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=21.39 E-value=71 Score=17.00 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=8.2
Q ss_pred ccCCCCCCEEEEE
Q psy12583 19 YQGLVKDDIILEF 31 (96)
Q Consensus 19 ~aGLk~GD~Il~v 31 (96)
+.-|++||.|.-+
T Consensus 12 ELs~~~Gd~i~v~ 24 (49)
T PF14604_consen 12 ELSFKKGDVITVL 24 (49)
T ss_dssp B-EB-TTEEEEEE
T ss_pred EeeEcCCCEEEEE
Confidence 5668888888766
No 125
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=21.27 E-value=62 Score=20.13 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=12.0
Q ss_pred cccccCCCCCCEEEEE
Q psy12583 16 VDVYQGLVKDDIILEF 31 (96)
Q Consensus 16 ~~~~aGLk~GD~Il~v 31 (96)
+-+.-+|++||+++-+
T Consensus 71 i~~~~~Lk~GD~V~ll 86 (100)
T PF10844_consen 71 ITFTDGLKVGDKVLLL 86 (100)
T ss_pred EEEecCCcCCCEEEEE
Confidence 3345689999998865
No 126
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=21.25 E-value=55 Score=25.42 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=17.5
Q ss_pred CCCCCCCCccccccccCCCCCCEEEEE
Q psy12583 5 LVDSEGYPRQDVDVYQGLVKDDIILEF 31 (96)
Q Consensus 5 ~~~~~~~pa~~~~~~aGLk~GD~Il~v 31 (96)
|+...|.|-. -..||+||+|+-.
T Consensus 313 lv~p~G~~vs----Vt~Lk~GD~vL~~ 335 (354)
T PF01959_consen 313 LVGPDGEPVS----VTELKPGDEVLVY 335 (354)
T ss_pred EECCCCCEee----eeecCCCCEEEEE
Confidence 4555677777 6789999999964
No 127
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=20.83 E-value=62 Score=23.21 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=12.0
Q ss_pred cccCCCCCCEEEEEC
Q psy12583 18 VYQGLVKDDIILEFG 32 (96)
Q Consensus 18 ~~aGLk~GD~Il~vn 32 (96)
|..||.+||+|+.-+
T Consensus 295 v~~gL~~Gd~Vv~~~ 309 (322)
T TIGR01730 295 IESGLKAGDQIVTAG 309 (322)
T ss_pred EccCCCCCCEEEEeC
Confidence 567999999998643
No 128
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=20.39 E-value=47 Score=20.14 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=8.3
Q ss_pred ccCCCCCCEEEEE
Q psy12583 19 YQGLVKDDIILEF 31 (96)
Q Consensus 19 ~aGLk~GD~Il~v 31 (96)
+.||+.||.|.=.
T Consensus 41 ~~Gi~~Gd~V~v~ 53 (110)
T PF01568_consen 41 KLGIKDGDWVRVS 53 (110)
T ss_dssp HCT--TTCEEEEE
T ss_pred HhcCcCCCEEEEE
Confidence 5689999988753
No 129
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=20.29 E-value=58 Score=20.03 Aligned_cols=32 Identities=6% Similarity=0.219 Sum_probs=18.0
Q ss_pred CCEEEEECCeecCCcccHHHHHHHHHhCCCce
Q psy12583 25 DDIILEFGPINSSNFKSLQDIASTVRAGVNTD 56 (96)
Q Consensus 25 GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~ 56 (96)
...++.|-+-+-.++...+++.+++++.-+..
T Consensus 37 ~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~ 68 (95)
T PF12327_consen 37 KGVLVNITGGPDLSLSEVNEAMEIIREKADPD 68 (95)
T ss_dssp SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTT
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcC
Confidence 35677776533334456666667777655443
No 130
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.29 E-value=75 Score=19.34 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=12.4
Q ss_pred ccCCCCCCEEEEECC
Q psy12583 19 YQGLVKDDIILEFGP 33 (96)
Q Consensus 19 ~aGLk~GD~Il~vng 33 (96)
+.||+.||.|.-.+.
T Consensus 46 ~lgi~~Gd~V~v~~~ 60 (116)
T cd02790 46 RLGIEDGEKVRVSSR 60 (116)
T ss_pred HcCCCCCCEEEEEcC
Confidence 579999999987664
No 131
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=20.11 E-value=1.9e+02 Score=21.54 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=20.5
Q ss_pred EEEEECCeecCCcccHHHHHHHHHhCC
Q psy12583 27 IILEFGPINSSNFKSLQDIASTVRAGV 53 (96)
Q Consensus 27 ~Il~vng~~~~~~~~~~di~~~i~~~~ 53 (96)
++.+|+|..+.+-..|..+.++++...
T Consensus 2 ~V~KFGGtSv~~~~~i~~v~~ii~~~~ 28 (288)
T cd04245 2 KVVKFGGSSLASAEQFQKVKAIVKADP 28 (288)
T ss_pred EEEEECcCccCCHHHHHHHHHHHHhcC
Confidence 478999977766677778888888653
Done!