RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12583
         (96 letters)



>d1iooa_ d.124.1.1 (A:) Gemetophytic self-incompatibility associated
           SF11-RNase {Winged tobacco (Nicotiana alata) [TaxId:
           4087]}
          Length = 196

 Score = 27.0 bits (59), Expect = 0.34
 Identities = 7/45 (15%), Positives = 13/45 (28%)

Query: 28  ILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLV 72
            L+   I   +  + QDI   ++     +  I           L 
Sbjct: 120 TLQTHRIIPGSSYTFQDIFDAIKTVSQENPDIKCAEVTKGTPELY 164


>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus
           thermophilus [TaxId: 274]}
          Length = 373

 Score = 26.1 bits (56), Expect = 0.77
 Identities = 9/51 (17%), Positives = 17/51 (33%)

Query: 22  LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLV 72
           L+          +  ++   + D       G    +P+ VLRN   R   +
Sbjct: 256 LLDPLEYGSMAALMRASLLLVTDSGGLQEEGAALGVPVVVLRNVTERPEGL 306


>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 168

 Score = 25.8 bits (57), Expect = 0.80
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 42 LQDIASTVRAGVNTDIPITVLRNE 65
          LQD+++ VR      +PI  L+ +
Sbjct: 44 LQDLSTVVRKAERFGLPIVNLKGQ 67


>d1koea_ d.169.1.5 (A:) Endostatin {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 172

 Score = 24.5 bits (53), Expect = 2.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 41 SLQDIASTVRAGVNTDIPITVLRNE 65
           LQD+ S VR      +PI  L++E
Sbjct: 47 RLQDLYSIVRRADRGSVPIVNLKDE 71


>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal
          processing protease {Algae (Scenedesmus obliquus)
          [TaxId: 3088]}
          Length = 92

 Score = 23.0 bits (49), Expect = 4.9
 Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 9  EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTR 68
           G P +      G    D+I+           SL D++  ++   ++ + + +       
Sbjct: 28 PGGPAEKAGARAG----DVIVTVDGTAVKG-MSLYDVSDLLQGEADSQVEVVLHAPGAPS 82

Query: 69 QRLVLR 74
              L+
Sbjct: 83 NTRTLQ 88


>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit
          {Plasmodium falciparum [TaxId: 5833]}
          Length = 190

 Score = 23.5 bits (50), Expect = 5.3
 Identities = 11/45 (24%), Positives = 14/45 (31%)

Query: 17 DVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITV 61
          DV     K  II     IN      L      +    + DI I +
Sbjct: 10 DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHNDIKIYI 54


>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human
          (Homo sapiens), mitochondrial [TaxId: 9606]}
          Length = 193

 Score = 23.4 bits (50), Expect = 5.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 17 DVYQGLVKDDIILEFGPINSSN 38
          D+Y  L+++ I+   GPI+ S 
Sbjct: 18 DIYSRLLRERIVCVMGPIDDSV 39


>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit
          {Escherichia coli [TaxId: 562]}
          Length = 183

 Score = 23.3 bits (50), Expect = 6.0
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 17 DVYQGLVKDDIILEFGPINSSN 38
          D+Y  L+K+ +I   G +    
Sbjct: 8  DIYSRLLKERVIFLTGQVEDHM 29


>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 124

 Score = 23.0 bits (49), Expect = 6.7
 Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 17  DVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP 75
                + + D I++   IN    ++ ++  + + +  N +  + + R E       +  
Sbjct: 62  AKDGRIREGDRIIQ---INGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWMDD 117


>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
          {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 192

 Score = 23.1 bits (49), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 17 DVYQGLVKDDIILEFGPINSSN 38
          D+Y  L+KD II+  GP+  + 
Sbjct: 16 DIYSRLLKDRIIMLTGPVEDNM 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.140    0.403 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 330,822
Number of extensions: 12671
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 10
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)