BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12584
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ + ++ S++HE+F++S K P +++ W PPKGY ++G P+ PNNW S GG
Sbjct: 102 MKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGG 161
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNN 87
SAW ++ + +EFYL F Q D N+ N
Sbjct: 162 SAWTFDEKTQEFYLRLFCSTQPDLNWEN 189
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ + ++ S++HE+F++S K P +++ W PPKGY ++G P+ PNNW S GG
Sbjct: 102 MKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGG 161
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNN 87
SAW ++ + +EFYL F Q D N+ N
Sbjct: 162 SAWTFDEKTQEFYLRLFCSTQPDLNWEN 189
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ L++ ++SS +HE+F+ S K+ PY +YY W K DG PNN+ S GG
Sbjct: 93 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGH--EPNNYPSFFGG 146
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQVVE 92
SAWE + ++YLH FG+ Q D N++ P++ E
Sbjct: 147 SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLRE 179
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ L++ ++SS +HE+F+ S K+ PY +YY W K DG PNN+ S GG
Sbjct: 94 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGH--EPNNYPSFFGG 147
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQVVE 92
SAWE + ++YLH FG+ Q D N++ P++ E
Sbjct: 148 SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLRE 180
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ L++ ++SS +HE+F+ S K+ PY +YY W K DG PNN+ S GG
Sbjct: 121 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGH--EPNNYPSFFGG 174
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQVVE 92
SAWE + ++YLH FG+ Q D N++ P++ E
Sbjct: 175 SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLRE 207
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ L++ ++SS +HE+F+ S K+ PY +YY W K DG PNN+ S GG
Sbjct: 93 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGH--EPNNYPSFFGG 146
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQVVE 92
SAWE + ++YLH FG+ Q D N++ P++ E
Sbjct: 147 SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLRE 179
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ L++ ++SS +HE+F+ S K+ PY +YY W K DG PNN+ S GG
Sbjct: 93 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGH--EPNNYPSFFGG 146
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQVVE 92
SAWE + ++YLH FG+ Q D N++ P++ E
Sbjct: 147 SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLRE 179
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ L++ ++SS +HE+F+ S K+ PY +YY W K DG PNN+ S GG
Sbjct: 94 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGH--EPNNYPSFFGG 147
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQVVE 92
SAWE + ++YLH FG+ Q D N++ P++ E
Sbjct: 148 SAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLRE 180
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 1 IHLLLSFSPDYSSTKHE-FFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ L++ +++S +H F Q K PY +YY W K D P PNN+ S GG
Sbjct: 107 MRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGK----DNQP--PNNYPSFFGG 160
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQVVE 92
SAW+ +A+ ++YLH F + Q D N++NP+V E
Sbjct: 161 SAWQKDAKSGQYYLHYFARQQPDLNWDNPKVRE 193
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 7/91 (7%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ L++ +++S +H +F +S K K+ Y +YY+W P K +G PNNW + G
Sbjct: 93 MKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGK----EGK--EPNNWGAAFSG 146
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
SAW+++ E+YLH F K Q D N++N +V
Sbjct: 147 SAWQYDEMTDEYYLHLFSKKQPDLNWDNEKV 177
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ L++ ++SS +HE+F+ S K+ PY +YY W K DG PNN+ S GG
Sbjct: 94 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGH--EPNNYPSFFGG 147
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQVVE 92
SAWE + ++YLH G+ Q D N++ P++ E
Sbjct: 148 SAWEKDPVTGQYYLHYLGRQQPDLNWDTPKLRE 180
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 7/91 (7%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ L++ +++S ++E+F KS K+ PY YY W K +G APNN+ S GG
Sbjct: 93 MRLMIDVVINHTSDQNEWFVKSKSSKDNPYRGYYFWKDAK----EGQ--APNNYPSFFGG 146
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
SAW+ + + ++YLH F K Q D N++NP+V
Sbjct: 147 SAWQKDEKTNQYYLHYFAKQQPDLNWDNPKV 177
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
+ ++L +++S +H +F +S ++ P ++Y+W K DG PNNW S GG
Sbjct: 93 LKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGK----DGRE--PNNWESIFGG 146
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
SAW+++ ++YLH F Q D N+ N +V
Sbjct: 147 SAWQYDERTGQYYLHIFDVKQPDLNWENSEV 177
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
I +++ +++S +H++F ++ K K+ Y +YY+W P PN+ S G
Sbjct: 94 IKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRDPVDEHE------PNDLKSAFSG 147
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
SAW+++ ++YLH F Q D N+ N ++
Sbjct: 148 SAWKYDERSGQYYLHFFADQQPDLNWQNTEL 178
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 16/93 (17%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYT---NYYVWAPPKGYSSDGTPLAPNNWLSKE 57
I +++ +++S +H +F ++ +E P + +YY+W PN+ S
Sbjct: 93 IKIIMDLVVNHTSDEHAWFIEA--REHPDSSERDYYIWCD-----------QPNDLESIF 139
Query: 58 GGSAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
GGSAW+++ + ++YLH F K Q D N+ N +
Sbjct: 140 GGSAWQYDDKSDQYYLHFFSKKQPDLNWENANL 172
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 16/93 (17%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYT---NYYVWAPPKGYSSDGTPLAPNNWLSKE 57
I +++ +++S +H +F ++ +E P + +YY+W PN+ S
Sbjct: 93 IKIIMDLVVNHTSDEHAWFIEA--REHPDSSERDYYIWCD-----------QPNDLESIF 139
Query: 58 GGSAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
GGSAW+++ + ++YLH F K Q D N+ N +
Sbjct: 140 GGSAWQYDDKSDQYYLHFFSKKQPDLNWENANL 172
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNN-WLSKEGG 59
I ++L ++ H +FQK++K + Y +YYVWA + T L W +G
Sbjct: 84 IKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKE------TDLDERREW---DGE 134
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQVVE 92
W E FY FG D N++NPQV +
Sbjct: 135 KIWH-PLEDGRFYRGLFGPFSPDLNYDNPQVFD 166
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
I +++ +++S +H +F K+ + K Y +YYVWA P + + T L +GG
Sbjct: 96 IKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKE-TKL--------DGG 146
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQVVE 92
W ++ Y F D N+NNP+V E
Sbjct: 147 RVWHYSP--TGMYYGYFWSGMPDLNYNNPEVQE 177
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGS 60
I +++ F+P+++S E + Y N + GY++D N + GGS
Sbjct: 130 IKIVIDFAPNHTSPAMETDTSFAENGRLYDNGTLVG---GYTND-----TNGYFHHNGGS 181
Query: 61 AWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
++++ Y + + + ADFN NN + +YF
Sbjct: 182 --DFSSLENGIYKNTY--DLADFNHNNATIDKYF 211
>pdb|3MK0|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK1|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK2|A Chain A, Placental Alkaline Phosphatase Complexed With Phe
pdb|2GLQ|A Chain A, X-Ray Structure Of Human Alkaline Phosphatase In Complex
With Strontium
pdb|1ZEF|A Chain A, Structure Of Alkaline Phosphatase From Human Placenta In
Complex With Its Uncompetitive Inhibitor L-Phe
pdb|1ZEB|A Chain A, X-ray Structure Of Alkaline Phosphatase From Human
Placenta In Complex With 5'-amp
Length = 484
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 38 PKGYSSDGTPLAPNN----WLSKEGGSAWEWN 65
P YS GT L N WL+K G+ + WN
Sbjct: 218 PDDYSQGGTRLDGKNLVQEWLAKRQGARYVWN 249
>pdb|1ZED|A Chain A, Alkaline Phosphatase From Human Placenta In Complex With
P- Nitrophenyl-Phosphonate
Length = 484
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 38 PKGYSSDGTPLAPNN----WLSKEGGSAWEWN 65
P YS GT L N WL+K G+ + WN
Sbjct: 218 PDDYSQGGTRLDGKNLVQEWLAKRQGARYVWN 249
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGS 60
I +++ F+P+++S E + Y N + GY++D N + GGS
Sbjct: 130 IKIVIDFAPNHTSPAMETDTSFAENGRLYDNGTLVG---GYTND-----TNGYFHHNGGS 181
Query: 61 AWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
++++ Y + + + ADFN NN + +YF
Sbjct: 182 --DFSSLENGIYKNLY--DLADFNHNNATIDKYF 211
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGS 60
I +++ F+P+++S E + Y N + GY++D N + GGS
Sbjct: 130 IKIVIDFAPNHTSPAMETDTSFAENGRLYDNGTLVG---GYTND-----TNGYFHHNGGS 181
Query: 61 AWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
++++ Y + + + ADFN NN + +YF
Sbjct: 182 --DFSSLENGIYKNLY--DLADFNHNNATIDKYF 211
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGS 60
I +++ F+P+++S E + Y N + GY++D N + GGS
Sbjct: 130 IKIVIDFAPNHTSPAMETDTSFAENGRLYDNGTLVG---GYTND-----TNGYFHHNGGS 181
Query: 61 AWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
++++ Y + + + ADFN NN + +YF
Sbjct: 182 --DFSSLENGIYKNLY--DLADFNHNNATIDKYF 211
>pdb|1EW2|A Chain A, Crystal Structure Of A Human Phosphatase
Length = 513
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 38 PKGYSSDGTPLAPNN----WLSKEGGSAWEWN 65
P YS GT L N WL+K G+ + WN
Sbjct: 218 PDDYSQGGTRLDGKNLVQEWLAKRQGARYVWN 249
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAP----PKGYSSDGTPLAPNNW--- 53
I ++ F +++S +HE+ Q+ + + N+Y P P Y + P+
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGG 236
Query: 54 LSKEGGSAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
S+ W W F Q D N++NP V
Sbjct: 237 FSQLEDGRWVWTT---------FNSFQWDLNYSNPWV 264
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAP----PKGYSSDGTPLAPNNW--- 53
I ++ F +++S +HE+ Q+ + + N+Y P P Y + P+
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGG 236
Query: 54 LSKEGGSAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
S+ W W F Q D N++NP V
Sbjct: 237 FSQLEDGRWVWTT---------FNSFQWDLNYSNPWV 264
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAP----PKGYSSDGTPLAPNNW--- 53
I ++ F +++S +HE+ Q+ + + N+Y P P Y + P+
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGG 236
Query: 54 LSKEGGSAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
S+ W W F Q D N++NP V
Sbjct: 237 FSQLEDGRWVWTT---------FNSFQWDLNYSNPWV 264
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAP----PKGYSSDGTPLAPNNW--- 53
I ++ F +++S +HE+ Q+ + + N+Y P P Y + P+
Sbjct: 181 ISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGG 240
Query: 54 LSKEGGSAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
S+ W W F Q D N++NP V
Sbjct: 241 FSQLEDGRWVWTT---------FNSFQWDLNYSNPWV 268
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAP----PKGYSSDGTPLAPNNW--- 53
I ++ F +++S +HE+ Q+ + + N+Y P P Y + P+
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGG 236
Query: 54 LSKEGGSAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
S+ W W F Q D N++NP V
Sbjct: 237 FSQLEDGRWVWTT---------FNSFQWDLNYSNPWV 264
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAP----PKGYSSDGTPLAPNNW--- 53
I ++ F +++S +HE+ Q+ + + N+Y P P Y + P+
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGG 236
Query: 54 LSKEGGSAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
S+ W W F Q D N++NP V
Sbjct: 237 FSQLEDGRWVWTT---------FNSFQWDLNYSNPWV 264
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAP----PKGYSSDGTPLAPNNW--- 53
I ++ F +++S +HE+ Q+ + + N+Y P P Y + P+
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGG 236
Query: 54 LSKEGGSAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
S+ W W F Q D N++NP V
Sbjct: 237 FSQLEDGRWVWTT---------FNSFQWDLNYSNPWV 264
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAP----PKGYSSDGTPLAPNNW--- 53
I ++ F +++S +HE+ Q+ + + N+Y P P Y + P+
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGG 236
Query: 54 LSKEGGSAWEWNAERKEFYLHQFGKNQADFNFNNPQV 90
S+ W W F Q D N++NP V
Sbjct: 237 FSQLEDGRWVWTT---------FNSFQWDLNYSNPWV 264
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed
Globulin From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed
Globulin From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed
Globulin From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed
Globulin From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed
Globulin From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed
Globulin From Pisum Sativum L
Length = 496
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 48 LAPNNWLSKEGGSAWEWNAERKEFYLHQFGKNQADFNFN 86
L P+N + EGG WN K+F ++A N
Sbjct: 18 LEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQRN 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,665,859
Number of Sequences: 62578
Number of extensions: 155317
Number of successful extensions: 319
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 55
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)