Query psy12584
Match_columns 94
No_of_seqs 113 out of 1057
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 23:04:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13840 sucrose phosphorylase 99.9 7.8E-27 1.7E-31 176.7 9.2 90 1-94 78-175 (495)
2 TIGR03852 sucrose_gtfA sucrose 99.9 1.1E-25 2.5E-30 169.5 5.5 86 1-94 73-171 (470)
3 PRK10933 trehalose-6-phosphate 99.9 3.1E-24 6.7E-29 164.6 8.2 88 1-94 95-182 (551)
4 TIGR02403 trehalose_treC alpha 99.9 4.7E-24 1E-28 163.3 8.3 87 1-94 89-175 (543)
5 TIGR02456 treS_nterm trehalose 99.8 5E-20 1.1E-24 141.0 9.0 89 1-94 90-179 (539)
6 TIGR02455 TreS_stutzeri trehal 99.8 1.6E-20 3.5E-25 145.2 5.7 92 1-94 144-275 (688)
7 KOG0471|consensus 99.8 1.6E-20 3.4E-25 144.1 4.6 93 1-94 102-194 (545)
8 COG0366 AmyA Glycosidases [Car 99.8 1E-19 2.2E-24 135.8 8.3 88 1-94 91-180 (505)
9 PF00128 Alpha-amylase: Alpha 99.7 6E-18 1.3E-22 118.4 3.9 84 1-94 66-150 (316)
10 PRK10785 maltodextrin glucosid 99.6 1.5E-15 3.1E-20 117.8 5.7 64 1-94 240-311 (598)
11 PLN00196 alpha-amylase; Provis 99.0 1E-09 2.2E-14 82.7 5.3 78 1-94 106-184 (428)
12 PRK09441 cytoplasmic alpha-amy 98.9 9E-10 2E-14 83.6 4.3 21 1-21 95-117 (479)
13 TIGR02401 trehalose_TreY malto 98.8 9.1E-09 2E-13 82.5 7.3 35 1-35 79-118 (825)
14 PRK09505 malS alpha-amylase; R 98.8 7E-09 1.5E-13 82.0 5.5 26 69-94 414-442 (683)
15 PRK14507 putative bifunctional 98.6 4.6E-08 1E-12 83.0 4.7 37 1-37 821-862 (1693)
16 PRK14511 maltooligosyl trehalo 98.6 5.3E-08 1.2E-12 78.6 4.2 34 1-34 83-121 (879)
17 PLN02784 alpha-amylase 98.6 6.9E-08 1.5E-12 77.7 4.2 72 1-94 582-654 (894)
18 PLN02361 alpha-amylase 98.4 5.2E-07 1.1E-11 67.7 5.1 20 75-94 141-160 (401)
19 PRK03705 glycogen debranching 98.3 7.8E-07 1.7E-11 70.3 4.7 19 1-19 256-277 (658)
20 TIGR02100 glgX_debranch glycog 98.3 6.6E-07 1.4E-11 71.0 3.9 18 1-18 259-276 (688)
21 PRK12313 glycogen branching en 98.0 7.4E-06 1.6E-10 64.4 5.0 18 1-18 234-251 (633)
22 TIGR01515 branching_enzym alph 98.0 1.4E-05 3E-10 62.8 5.1 20 1-20 220-239 (613)
23 TIGR02103 pullul_strch alpha-1 97.9 8.5E-06 1.8E-10 66.4 2.9 34 1-36 418-451 (898)
24 TIGR02104 pulA_typeI pullulana 97.8 2.2E-05 4.9E-10 61.4 4.5 20 1-20 243-263 (605)
25 TIGR02402 trehalose_TreZ malto 97.8 1.4E-05 3E-10 62.0 2.5 19 1-19 174-192 (542)
26 PRK05402 glycogen branching en 97.6 4.9E-05 1.1E-09 60.7 3.7 19 1-19 329-347 (726)
27 PLN02877 alpha-amylase/limit d 97.6 0.00011 2.3E-09 60.5 4.5 36 1-38 480-516 (970)
28 PRK14510 putative bifunctional 97.6 7.3E-05 1.6E-09 62.7 3.6 19 1-19 261-279 (1221)
29 TIGR01531 glyc_debranch glycog 97.5 6.2E-05 1.4E-09 63.5 2.5 21 1-21 199-219 (1464)
30 TIGR02102 pullulan_Gpos pullul 97.5 0.00014 3.1E-09 60.5 4.4 30 1-37 569-598 (1111)
31 COG3280 TreY Maltooligosyl tre 97.5 7.7E-05 1.7E-09 59.7 2.6 37 1-37 82-123 (889)
32 PLN02960 alpha-amylase 97.4 0.00021 4.5E-09 58.2 4.6 19 1-19 480-498 (897)
33 PRK14706 glycogen branching en 97.3 0.00049 1.1E-08 54.5 5.6 19 1-19 231-249 (639)
34 PRK12568 glycogen branching en 97.3 0.00036 7.8E-09 56.0 4.4 16 1-16 333-348 (730)
35 PLN02447 1,4-alpha-glucan-bran 97.1 0.00063 1.4E-08 54.8 4.0 17 1-17 314-330 (758)
36 PRK14705 glycogen branching en 97.0 0.00094 2E-08 56.3 4.3 20 1-21 829-848 (1224)
37 smart00642 Aamy Alpha-amylase 96.9 0.00049 1.1E-08 45.9 1.9 14 1-14 84-97 (166)
38 PF14701 hDGE_amylase: glucano 96.2 0.004 8.6E-08 47.3 2.5 21 1-21 91-111 (423)
39 PLN03244 alpha-amylase; Provis 95.9 0.012 2.5E-07 48.1 4.3 19 1-19 455-473 (872)
40 COG1523 PulA Type II secretory 94.4 0.022 4.8E-07 45.8 1.6 14 1-14 279-292 (697)
41 COG0296 GlgB 1,4-alpha-glucan 84.5 0.68 1.5E-05 37.1 2.0 20 1-20 228-247 (628)
42 KOG3625|consensus 73.5 1.5 3.3E-05 37.1 0.9 19 3-21 213-231 (1521)
43 cd06593 GH31_xylosidase_YicI Y 65.2 34 0.00075 24.5 6.3 29 1-35 80-108 (308)
44 KOG0470|consensus 52.9 5.6 0.00012 32.6 0.5 14 1-14 325-338 (757)
45 cd06591 GH31_xylosidase_XylS X 48.9 1E+02 0.0022 22.4 6.6 30 1-36 80-109 (319)
46 KOG2212|consensus 48.5 7.1 0.00015 29.8 0.4 15 79-93 182-196 (504)
47 PF00525 Crystallin: Alpha cry 37.0 11 0.00023 21.2 -0.1 11 13-23 4-14 (59)
48 cd06592 GH31_glucosidase_KIAA1 36.4 1.2E+02 0.0027 21.7 5.3 29 1-35 84-112 (303)
49 PF14872 GHL5: Hypothetical gl 34.1 23 0.0005 29.1 1.3 18 1-18 325-342 (811)
50 PHA02818 hypothetical protein; 31.8 4.2 9.1E-05 24.6 -2.4 16 4-19 22-37 (92)
51 cd06599 GH31_glycosidase_Aec37 30.5 2.1E+02 0.0046 20.7 6.1 30 1-36 87-116 (317)
52 KOG1882|consensus 22.6 28 0.0006 25.2 -0.1 19 2-20 202-222 (293)
53 PRK10658 putative alpha-glucos 21.1 4.6E+02 0.01 21.4 6.8 29 1-35 339-367 (665)
54 KOG4134|consensus 20.6 41 0.00088 24.0 0.4 30 4-33 110-145 (253)
No 1
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.94 E-value=7.8e-27 Score=176.71 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=73.3
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhc--CCCCCCeEEeCCCCCCCCCCCCCCCCCCCcCCC---CC---cceeeCCCCcEE
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKK--EEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEG---GS---AWEWNAERKEFY 72 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~--~~~~~d~f~~~~~~~~~~~~~~~~p~~~~s~~~---~~---~w~~~~~~~~~y 72 (94)
||||+|+|+||||++|||||+++++ +++|+|||+|.+.... .+ .++.++.+++. +. .|++++++.++|
T Consensus 78 iklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~--~~--~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~ 153 (495)
T PRK13840 78 HDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFP--DG--ATEEDLAGIYRPRPGLPFTTYTLADGKTRLV 153 (495)
T ss_pred CeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCc--CC--CCCcccccccCCCCCCcccceEecCCCceEE
Confidence 8999999999999999999999864 8999999999874321 01 24456666553 22 466777788999
Q ss_pred EecCCCCccccCCCCHHHHhhC
Q psy12584 73 LHQFGKNQADFNFNNPQVVEYF 94 (94)
Q Consensus 73 ~~~F~~~~pdLN~~np~V~~~~ 94 (94)
|++|.+.|||||++||+|+++|
T Consensus 154 w~tF~~~QpDLN~~NP~V~~~i 175 (495)
T PRK13840 154 WTTFTPQQIDIDVHSAAGWEYL 175 (495)
T ss_pred eccCCcccceeCCCCHHHHHHH
Confidence 9999999999999999999985
No 2
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.92 E-value=1.1e-25 Score=169.55 Aligned_cols=86 Identities=15% Similarity=0.302 Sum_probs=67.0
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhc--CCCCCCeEE-----eCCCCCCCCCCCCCCCCCCCcCCC------CCcceeeCC
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKK--EEPYTNYYV-----WAPPKGYSSDGTPLAPNNWLSKEG------GSAWEWNAE 67 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~--~~~~~d~f~-----~~~~~~~~~~~~~~~p~~~~s~~~------~~~w~~~~~ 67 (94)
||||+|+|+||||++|||||+++++ +++|+|||+ |.+..+.. ..+..++. -..|+++.+
T Consensus 73 ~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~--------~d~~~v~~~~~~~~~~~~~~~~~ 144 (470)
T TIGR03852 73 YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQ--------EDVDLIYKRKDRAPYQEVTFADG 144 (470)
T ss_pred hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccc--------cccccccCCCCCCCCCceEEcCC
Confidence 6899999999999999999999986 899999999 44321110 01111111 125777777
Q ss_pred CCcEEEecCCCCccccCCCCHHHHhhC
Q psy12584 68 RKEFYLHQFGKNQADFNFNNPQVVEYF 94 (94)
Q Consensus 68 ~~~~y~~~F~~~~pdLN~~np~V~~~~ 94 (94)
+++|||++|.++|||||++||+|+++|
T Consensus 145 ~~~~~w~tF~~~QpDLN~~np~v~e~i 171 (470)
T TIGR03852 145 STEKVWNTFGEEQIDLDVTSETTKRFI 171 (470)
T ss_pred CCeEEEccCCccccccCCCCHHHHHHH
Confidence 889999999999999999999999985
No 3
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=99.90 E-value=3.1e-24 Score=164.59 Aligned_cols=88 Identities=42% Similarity=0.888 Sum_probs=78.6
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeEEeCCCCCCCCCCCCCCCCCCCcCCCCCcceeeCCCCcEEEecCCCCc
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGKNQ 80 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f~~~~~~~~~~~~~~~~p~~~~s~~~~~~w~~~~~~~~~y~~~F~~~~ 80 (94)
||||||+|+||||.+|+||+++++.++||+|||+|.+.... .+|++|.+.+++++|+++..+++||++.|.+.|
T Consensus 95 i~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~------~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~ 168 (551)
T PRK10933 95 IRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPE------TPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQ 168 (551)
T ss_pred CEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCC------CCCCcccccCCCccccccCCCCceEeecccccC
Confidence 89999999999999999999997668999999999875321 356788888888899998888999999999999
Q ss_pred cccCCCCHHHHhhC
Q psy12584 81 ADFNFNNPQVVEYF 94 (94)
Q Consensus 81 pdLN~~np~V~~~~ 94 (94)
||||++||+||++|
T Consensus 169 pdLn~~np~V~~~l 182 (551)
T PRK10933 169 ADLNWENPAVRAEL 182 (551)
T ss_pred CccCCCCHHHHHHH
Confidence 99999999999875
No 4
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=99.90 E-value=4.7e-24 Score=163.28 Aligned_cols=87 Identities=45% Similarity=0.941 Sum_probs=78.5
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeEEeCCCCCCCCCCCCCCCCCCCcCCCCCcceeeCCCCcEEEecCCCCc
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGKNQ 80 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f~~~~~~~~~~~~~~~~p~~~~s~~~~~~w~~~~~~~~~y~~~F~~~~ 80 (94)
||||||+|+||||.+|+||+++++++++|+|||+|.+.. + .+|++|.+.+++++|.++..+++||++.|.+.|
T Consensus 89 i~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~-----~--~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~ 161 (543)
T TIGR02403 89 IKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPK-----G--KPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQ 161 (543)
T ss_pred CEEEEEECccccccchHHHHHhhcCCCcccCceEecCCC-----C--CCCCcccccCCCcCccccCCCCceEEeccCCcC
Confidence 899999999999999999999998899999999998753 2 256788888888899988888999999999999
Q ss_pred cccCCCCHHHHhhC
Q psy12584 81 ADFNFNNPQVVEYF 94 (94)
Q Consensus 81 pdLN~~np~V~~~~ 94 (94)
||||++||+|+++|
T Consensus 162 pdln~~np~v~~~i 175 (543)
T TIGR02403 162 ADLNWENPEVREEL 175 (543)
T ss_pred CccCCCCHHHHHHH
Confidence 99999999999985
No 5
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=99.82 E-value=5e-20 Score=140.96 Aligned_cols=89 Identities=24% Similarity=0.591 Sum_probs=69.6
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhc-CCCCCCeEEeCCCCCCCCCCCCCCCCCCCcCCCCCcceeeCCCCcEEEecCCCC
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKK-EEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGKN 79 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~-~~~~~d~f~~~~~~~~~~~~~~~~p~~~~s~~~~~~w~~~~~~~~~y~~~F~~~ 79 (94)
||||||+|+||||.+|+||++++++ +++|++||+|.+...... + +.......+...|.++..++++|++.|.+.
T Consensus 90 i~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~ 164 (539)
T TIGR02456 90 MRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYK-D----TRIIFVDTEKSNWTFDPVAKQYYWHRFFSH 164 (539)
T ss_pred CEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccc-c----ccccccccCCCCccccCCcCeeEEecccCC
Confidence 8999999999999999999999987 899999999976432110 0 000000112356777778899999999999
Q ss_pred ccccCCCCHHHHhhC
Q psy12584 80 QADFNFNNPQVVEYF 94 (94)
Q Consensus 80 ~pdLN~~np~V~~~~ 94 (94)
|||||++||+||++|
T Consensus 165 ~pdln~~np~vr~~l 179 (539)
T TIGR02456 165 QPDLNYDNPAVHDAV 179 (539)
T ss_pred CCccCCCCHHHHHHH
Confidence 999999999999875
No 6
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.82 E-value=1.6e-20 Score=145.19 Aligned_cols=92 Identities=14% Similarity=0.221 Sum_probs=71.7
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeE-----------EeCCCCCCC--------------CCCCCCCCCCCCc
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYY-----------VWAPPKGYS--------------SDGTPLAPNNWLS 55 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f-----------~~~~~~~~~--------------~~~~~~~p~~~~s 55 (94)
||||+|+|+||||..|+ |+.|..++++|++|| +|.+.+... ..|. +|...-+-
T Consensus 144 ~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~-i~~~l~rv 221 (688)
T TIGR02455 144 AITIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHY-IVGQLQRV 221 (688)
T ss_pred CEEEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccC-cccccccc
Confidence 79999999999999999 999998899999999 888765431 0010 11111111
Q ss_pred C-----CCCCcceee--------CCCCcEEEecCCCCccccCCCCHH--HHhhC
Q psy12584 56 K-----EGGSAWEWN--------AERKEFYLHQFGKNQADFNFNNPQ--VVEYF 94 (94)
Q Consensus 56 ~-----~~~~~w~~~--------~~~~~~y~~~F~~~~pdLN~~np~--V~~~~ 94 (94)
+ .+.+.|+++ ..+.+||+|.|.++||||||.||. ||++|
T Consensus 222 iF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~ 275 (688)
T TIGR02455 222 IFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLI 275 (688)
T ss_pred eecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHH
Confidence 1 235689998 788999999999999999999999 99875
No 7
>KOG0471|consensus
Probab=99.81 E-value=1.6e-20 Score=144.09 Aligned_cols=93 Identities=32% Similarity=0.659 Sum_probs=84.9
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeEEeCCCCCCCCCCCCCCCCCCCcCCCCCcceeeCCCCcEEEecCCCCc
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGKNQ 80 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f~~~~~~~~~~~~~~~~p~~~~s~~~~~~w~~~~~~~~~y~~~F~~~~ 80 (94)
||||+|+|+||+|.+|+||+.+...+..|+|||.|.+..... .|.|.||++|.+.+.+++|.++..+.+||.+.|...|
T Consensus 102 i~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~-~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~ 180 (545)
T KOG0471|consen 102 IKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLD-VGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQ 180 (545)
T ss_pred eEEEEeeccccCCccccccccCccccccceeeeeccCccccc-ccCCCCccchHhhhccccCcccccccceeccchhhcC
Confidence 899999999999999999999988755599999999876544 5778899999999999999999999999999999999
Q ss_pred cccCCCCHHHHhhC
Q psy12584 81 ADFNFNNPQVVEYF 94 (94)
Q Consensus 81 pdLN~~np~V~~~~ 94 (94)
||||++||+|+++|
T Consensus 181 pDln~~n~~V~~~~ 194 (545)
T KOG0471|consen 181 PDLNYENPDVRKAI 194 (545)
T ss_pred CCCCCCCHHHHHHH
Confidence 99999999999865
No 8
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1e-19 Score=135.80 Aligned_cols=88 Identities=38% Similarity=0.848 Sum_probs=76.1
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhc-CCCCC-CeEEeCCCCCCCCCCCCCCCCCCCcCCCCCcceeeCCCCcEEEecCCC
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKK-EEPYT-NYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGK 78 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~-~~~~~-d~f~~~~~~~~~~~~~~~~p~~~~s~~~~~~w~~~~~~~~~y~~~F~~ 78 (94)
||||+|+|+||||.+|+||++++++ .++++ +||+|.+.... + .+|++|.+.+++.+|++ ...++||++.|..
T Consensus 91 i~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 164 (505)
T COG0366 91 IKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPD---G--TPPNNWFSVFGGDAWTW-GNTGEYYLHLFSS 164 (505)
T ss_pred CEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCccc---C--CCCCcchhhcCCCCCCc-CCCCceEEEecCC
Confidence 8999999999999999999999987 56676 99999987542 2 35677888888888887 5578999999999
Q ss_pred CccccCCCCHHHHhhC
Q psy12584 79 NQADFNFNNPQVVEYF 94 (94)
Q Consensus 79 ~~pdLN~~np~V~~~~ 94 (94)
.|||||+.||+||+++
T Consensus 165 ~~~dln~~n~~v~~~~ 180 (505)
T COG0366 165 EQPDLNWENPEVREEL 180 (505)
T ss_pred CCCCcCCCCHHHHHHH
Confidence 9999999999999874
No 9
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.71 E-value=6e-18 Score=118.41 Aligned_cols=84 Identities=38% Similarity=0.796 Sum_probs=65.8
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhc-CCCCCCeEEeCCCCCCCCCCCCCCCCCCCcCCCCCcceeeCCCCcEEEecCCCC
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKK-EEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGKN 79 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~-~~~~~d~f~~~~~~~~~~~~~~~~p~~~~s~~~~~~w~~~~~~~~~y~~~F~~~ 79 (94)
||||||+|+||||..|+||+.+++. +.++++||.|.+.. ..+|.+|.+..+...|........ +.+...
T Consensus 66 i~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 135 (316)
T PF00128_consen 66 IKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGE-------GSPPGNWYSYFGGSNWEYDDWGDE---YQFWSD 135 (316)
T ss_dssp CEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBT-------STTSSTBBCSTTTSSEESCHHTHC---HSSSTT
T ss_pred ceEEEeeeccccccccccccccccccccccccceeecccc-------cccccccccccccccccccccccc---cccccc
Confidence 8999999999999999999999885 77899999997641 135556665566666765432222 667899
Q ss_pred ccccCCCCHHHHhhC
Q psy12584 80 QADFNFNNPQVVEYF 94 (94)
Q Consensus 80 ~pdLN~~np~V~~~~ 94 (94)
+||||++||+||++|
T Consensus 136 ~~dln~~n~~v~~~i 150 (316)
T PF00128_consen 136 LPDLNYENPEVREYI 150 (316)
T ss_dssp SEEBETTSHHHHHHH
T ss_pred cchhhhhhhhhhhhh
Confidence 999999999999875
No 10
>PRK10785 maltodextrin glucosidase; Provisional
Probab=99.59 E-value=1.5e-15 Score=117.80 Aligned_cols=64 Identities=16% Similarity=0.406 Sum_probs=50.0
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhc--------CCCCCCeEEeCCCCCCCCCCCCCCCCCCCcCCCCCcceeeCCCCcEE
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKK--------EEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFY 72 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~--------~~~~~d~f~~~~~~~~~~~~~~~~p~~~~s~~~~~~w~~~~~~~~~y 72 (94)
||||||+|+||||.+|+||+.+..+ ++||+|||.|.+... . . .|. .
T Consensus 240 ikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~----~-----~---------~w~--g------ 293 (598)
T PRK10785 240 MRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR----A-----L---------DWL--G------ 293 (598)
T ss_pred CEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCC----c-----C---------CcC--C------
Confidence 8999999999999999999987532 589999999875310 0 0 121 0
Q ss_pred EecCCCCccccCCCCHHHHhhC
Q psy12584 73 LHQFGKNQADFNFNNPQVVEYF 94 (94)
Q Consensus 73 ~~~F~~~~pdLN~~np~V~~~~ 94 (94)
...|||||++||+|+++|
T Consensus 294 ----~~~lPdLN~~np~v~~~l 311 (598)
T PRK10785 294 ----YASLPKLDFQSEEVVNEI 311 (598)
T ss_pred ----CCcCccccCCCHHHHHHH
Confidence 368999999999999875
No 11
>PLN00196 alpha-amylase; Provisional
Probab=98.96 E-value=1e-09 Score=82.66 Aligned_cols=78 Identities=8% Similarity=0.043 Sum_probs=43.0
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeEEeCCCCCCCCCCCCCCCCCCCcCCC-CCcceeeCCCCcEEEecCCCC
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEG-GSAWEWNAERKEFYLHQFGKN 79 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f~~~~~~~~~~~~~~~~p~~~~s~~~-~~~w~~~~~~~~~y~~~F~~~ 79 (94)
||||+|+|+||+|.+|.-+. ..|+.+..... ..+.+|..... .....+....+.+..+.....
T Consensus 106 IkVilDvV~NH~~~~~~~~~---------~~y~~~~~~~~-------~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (428)
T PLN00196 106 VQVIADIVINHRTAEHKDGR---------GIYCLFEGGTP-------DSRLDWGPHMICRDDTQYSDGTGNLDTGADFAA 169 (428)
T ss_pred CEEEEEECccCcccccccCC---------CceEECCCCCC-------CCccccccccCCCCcccccCCCCceeCCCCCCC
Confidence 89999999999999885221 12333322110 01122211000 000111122334444555689
Q ss_pred ccccCCCCHHHHhhC
Q psy12584 80 QADFNFNNPQVVEYF 94 (94)
Q Consensus 80 ~pdLN~~np~V~~~~ 94 (94)
+||||++||+|+++|
T Consensus 170 lpDLn~~np~V~~~l 184 (428)
T PLN00196 170 APDIDHLNKRVQREL 184 (428)
T ss_pred CCccCCCCHHHHHHH
Confidence 999999999999875
No 12
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=98.94 E-value=9e-10 Score=83.59 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.3
Q ss_pred CEEEEeecCcccCC--CCHHHHH
Q psy12584 1 IHLLLSFSPDYSST--KHEFFQK 21 (94)
Q Consensus 1 ikVilD~V~NHts~--~h~WF~~ 21 (94)
||||+|+|+||||. .|+||+.
T Consensus 95 i~vi~D~V~NH~~~~~~~~~~~~ 117 (479)
T PRK09441 95 IKVYADVVLNHKAGADEKETFRV 117 (479)
T ss_pred CEEEEEECcccccCCCcceeeee
Confidence 89999999999995 5689974
No 13
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=98.85 E-value=9.1e-09 Score=82.49 Aligned_cols=35 Identities=14% Similarity=0.450 Sum_probs=32.0
Q ss_pred CEEEEeecCcccCCC---CHHHHHhhhc--CCCCCCeEEe
Q psy12584 1 IHLLLSFSPDYSSTK---HEFFQKSVKK--EEPYTNYYVW 35 (94)
Q Consensus 1 ikVilD~V~NHts~~---h~WF~~a~~~--~~~~~d~f~~ 35 (94)
|+||+|+|+||+|.+ |+||+++++. +|+|++||.+
T Consensus 79 m~vIlDiVpNH~a~~~~~n~wf~dvl~~g~~S~y~~~Fdi 118 (825)
T TIGR02401 79 LGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDI 118 (825)
T ss_pred CEEEEEecccccccccccChHHHHHHHhCCCCCccCceEE
Confidence 899999999999987 8999999984 8999999954
No 14
>PRK09505 malS alpha-amylase; Reviewed
Probab=98.81 E-value=7e-09 Score=81.95 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=20.7
Q ss_pred CcEEEecCCCCccccCC---CCHHHHhhC
Q psy12584 69 KEFYLHQFGKNQADFNF---NNPQVVEYF 94 (94)
Q Consensus 69 ~~~y~~~F~~~~pdLN~---~np~V~~~~ 94 (94)
+.+++..|...+||+|+ +||+||++|
T Consensus 414 ~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL 442 (683)
T PRK09505 414 QASGLPVFYANKPDTRAKAIDGYTPRDYL 442 (683)
T ss_pred cccccchhhhcCcccccccccCHHHHHHH
Confidence 56777888888888886 688999875
No 15
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=98.61 E-value=4.6e-08 Score=82.97 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=33.1
Q ss_pred CEEEEeecCcccC---CCCHHHHHhhh-c-CCCCCCeEEeCC
Q psy12584 1 IHLLLSFSPDYSS---TKHEFFQKSVK-K-EEPYTNYYVWAP 37 (94)
Q Consensus 1 ikVilD~V~NHts---~~h~WF~~a~~-~-~~~~~d~f~~~~ 37 (94)
|+||||+|+||+| .+|+||+++++ + +|+|++||.+..
T Consensus 821 i~vilDiV~NH~~~~~~~n~w~~dvl~~g~~S~y~~~Fdidw 862 (1693)
T PRK14507 821 LGQLLDIVPNHMGVGGADNPWWLDVLENGPASPAADAFDIDW 862 (1693)
T ss_pred CEEEEEecccccCCCccCCHHHHHHHHhCCCCCccCeeeecc
Confidence 8999999999999 68999999997 4 899999997544
No 16
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=98.58 E-value=5.3e-08 Score=78.57 Aligned_cols=34 Identities=15% Similarity=0.476 Sum_probs=30.6
Q ss_pred CEEEEeecCcccCCCC---HHHHHhhh-c-CCCCCCeEE
Q psy12584 1 IHLLLSFSPDYSSTKH---EFFQKSVK-K-EEPYTNYYV 34 (94)
Q Consensus 1 ikVilD~V~NHts~~h---~WF~~a~~-~-~~~~~d~f~ 34 (94)
|+||+|+|+||||..| +||+++++ + +|+|++||.
T Consensus 83 i~VIlDiV~NH~~~~~~~n~ww~dvl~~g~~S~y~~~Fd 121 (879)
T PRK14511 83 MGLILDIVPNHMAVGGPDNPWWWDVLEWGRSSPYADFFD 121 (879)
T ss_pred CEEEEEeccccccCcCccCHHHHHHHHhCCCCCccCcee
Confidence 8999999999999854 99999997 4 899999994
No 17
>PLN02784 alpha-amylase
Probab=98.56 E-value=6.9e-08 Score=77.68 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=45.3
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhc-CCCCCCeEEeCCCCCCCCCCCCCCCCCCCcCCCCCcceeeCCCCcEEEecCCCC
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKK-EEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGKN 79 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~-~~~~~d~f~~~~~~~~~~~~~~~~p~~~~s~~~~~~w~~~~~~~~~y~~~F~~~ 79 (94)
|+||+|+|+||++.. |+.. .+ .++|.+++.|.+.... .+...| .+++.++.+.....
T Consensus 582 IkVIlDiViNH~ag~---f~~~-~g~~~~f~g~~dW~d~~i~---------------~ddp~F---~GrG~~~sgddf~~ 639 (894)
T PLN02784 582 IKVLGDAVLNHRCAH---FQNQ-NGVWNIFGGRLNWDDRAVV---------------ADDPHF---QGRGNKSSGDNFHA 639 (894)
T ss_pred CEEEEEECccccccc---ccCC-CCcccccCCeecCCCCccc---------------CCCccc---CCcCCcCcccccCc
Confidence 899999999999864 4432 22 4566666666543211 000011 12344455555678
Q ss_pred ccccCCCCHHHHhhC
Q psy12584 80 QADFNFNNPQVVEYF 94 (94)
Q Consensus 80 ~pdLN~~np~V~~~~ 94 (94)
+||||++||+||++|
T Consensus 640 lPDLDh~npeVR~eL 654 (894)
T PLN02784 640 APNIDHSQDFVRKDL 654 (894)
T ss_pred CCcCCCCCHHHHHHH
Confidence 999999999999875
No 18
>PLN02361 alpha-amylase
Probab=98.39 E-value=5.2e-07 Score=67.70 Aligned_cols=20 Identities=5% Similarity=-0.060 Sum_probs=16.9
Q ss_pred cCCCCccccCCCCHHHHhhC
Q psy12584 75 QFGKNQADFNFNNPQVVEYF 94 (94)
Q Consensus 75 ~F~~~~pdLN~~np~V~~~~ 94 (94)
.+...+||||++||+||+++
T Consensus 141 ~~~~~lpDLd~~np~Vr~~l 160 (401)
T PLN02361 141 DNFNGVPNIDHTQHFVRKDI 160 (401)
T ss_pred CCCccCCccCCCCHHHHHHH
Confidence 34578999999999999874
No 19
>PRK03705 glycogen debranching enzyme; Provisional
Probab=98.31 E-value=7.8e-07 Score=70.28 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=15.9
Q ss_pred CEEEEeecCcccCC---CCHHH
Q psy12584 1 IHLLLSFSPDYSST---KHEFF 19 (94)
Q Consensus 1 ikVilD~V~NHts~---~h~WF 19 (94)
||||||+|+|||+. .+|++
T Consensus 256 I~VIlDvV~NHt~~~~~~~~~~ 277 (658)
T PRK03705 256 IEVILDVVFNHSAELDLDGPTL 277 (658)
T ss_pred CEEEEEEcccCccCcCCCCcch
Confidence 89999999999996 35554
No 20
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=98.30 E-value=6.6e-07 Score=70.98 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=16.1
Q ss_pred CEEEEeecCcccCCCCHH
Q psy12584 1 IHLLLSFSPDYSSTKHEF 18 (94)
Q Consensus 1 ikVilD~V~NHts~~h~W 18 (94)
|+||||+|+|||+..+..
T Consensus 259 I~VIlDvV~NHt~~~~~~ 276 (688)
T TIGR02100 259 IEVILDVVYNHTAEGNEL 276 (688)
T ss_pred CEEEEEECcCCccCcCCC
Confidence 899999999999988754
No 21
>PRK12313 glycogen branching enzyme; Provisional
Probab=98.04 E-value=7.4e-06 Score=64.36 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=15.8
Q ss_pred CEEEEeecCcccCCCCHH
Q psy12584 1 IHLLLSFSPDYSSTKHEF 18 (94)
Q Consensus 1 ikVilD~V~NHts~~h~W 18 (94)
|+||||+|+||||.++..
T Consensus 234 i~VilD~V~nH~~~~~~~ 251 (633)
T PRK12313 234 IGVILDWVPGHFPKDDDG 251 (633)
T ss_pred CEEEEEECCCCCCCCccc
Confidence 899999999999987643
No 22
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=97.96 E-value=1.4e-05 Score=62.78 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=17.5
Q ss_pred CEEEEeecCcccCCCCHHHH
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQ 20 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~ 20 (94)
|+||||+|+|||+.++..+.
T Consensus 220 i~VilD~V~NH~~~~~~~~~ 239 (613)
T TIGR01515 220 IGVILDWVPGHFPKDDHGLA 239 (613)
T ss_pred CEEEEEecccCcCCccchhh
Confidence 89999999999998876654
No 23
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=97.89 E-value=8.5e-06 Score=66.36 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=25.2
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeEEeC
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWA 36 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f~~~ 36 (94)
|+||||+|+|||+..+++++..+.+-. ..||+..
T Consensus 418 i~VIlDVVyNHt~~~g~~~~s~ld~~~--P~YY~r~ 451 (898)
T TIGR02103 418 LNVVMDVVYNHTNASGPNDRSVLDKIV--PGYYHRL 451 (898)
T ss_pred CEEEEEeecccccccCccCcccccccC--cHhhEee
Confidence 899999999999999998875554422 2455543
No 24
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=97.84 E-value=2.2e-05 Score=61.44 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=16.3
Q ss_pred CEEEEeecCcccCC-CCHHHH
Q psy12584 1 IHLLLSFSPDYSST-KHEFFQ 20 (94)
Q Consensus 1 ikVilD~V~NHts~-~h~WF~ 20 (94)
|+||||+|+|||+. .+.+|+
T Consensus 243 i~VilDvV~NH~~~~~~~~f~ 263 (605)
T TIGR02104 243 IRVIMDVVYNHTYSREESPFE 263 (605)
T ss_pred CEEEEEEEcCCccCCCCCccc
Confidence 89999999999974 555565
No 25
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=97.78 E-value=1.4e-05 Score=61.96 Aligned_cols=19 Identities=5% Similarity=0.212 Sum_probs=16.6
Q ss_pred CEEEEeecCcccCCCCHHH
Q psy12584 1 IHLLLSFSPDYSSTKHEFF 19 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF 19 (94)
|+||||+|+|||+.++.++
T Consensus 174 i~VilD~V~NH~~~~~~~~ 192 (542)
T TIGR02402 174 LGVILDVVYNHFGPEGNYL 192 (542)
T ss_pred CEEEEEEccCCCCCccccc
Confidence 8999999999999876554
No 26
>PRK05402 glycogen branching enzyme; Provisional
Probab=97.65 E-value=4.9e-05 Score=60.74 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=16.4
Q ss_pred CEEEEeecCcccCCCCHHH
Q psy12584 1 IHLLLSFSPDYSSTKHEFF 19 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF 19 (94)
|+||||+|+|||+.++..+
T Consensus 329 i~VilD~V~NH~~~~~~~~ 347 (726)
T PRK05402 329 IGVILDWVPAHFPKDAHGL 347 (726)
T ss_pred CEEEEEECCCCCCCCccch
Confidence 8999999999998876544
No 27
>PLN02877 alpha-amylase/limit dextrinase
Probab=97.56 E-value=0.00011 Score=60.46 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=27.0
Q ss_pred CEEEEeecCcccCCCCHHHHHh-hhcCCCCCCeEEeCCC
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKS-VKKEEPYTNYYVWAPP 38 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a-~~~~~~~~d~f~~~~~ 38 (94)
|+||||+|+|||+..+||+..+ +.+- ..+||.+.+.
T Consensus 480 I~VImDVVyNHt~~~g~~~~~s~ld~~--vP~YY~r~~~ 516 (970)
T PLN02877 480 LRVVLDVVYNHLHSSGPFDENSVLDKI--VPGYYLRRNS 516 (970)
T ss_pred CEEEEEECCccccCCCCcchhhcccCC--CCCceEEECC
Confidence 8999999999999999998644 3332 2367776643
No 28
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.55 E-value=7.3e-05 Score=62.73 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=17.2
Q ss_pred CEEEEeecCcccCCCCHHH
Q psy12584 1 IHLLLSFSPDYSSTKHEFF 19 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF 19 (94)
|+||||+|+|||+..+.+.
T Consensus 261 I~VILDvV~NHt~~~~~~~ 279 (1221)
T PRK14510 261 IAVILDVVFNHTGESNHYG 279 (1221)
T ss_pred CEEEEEEccccccCCCCCC
Confidence 8999999999999987765
No 29
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=97.50 E-value=6.2e-05 Score=63.55 Aligned_cols=21 Identities=0% Similarity=0.093 Sum_probs=20.1
Q ss_pred CEEEEeecCcccCCCCHHHHH
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQK 21 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~ 21 (94)
|+||+|+|+||||.+|+||++
T Consensus 199 m~~ilDvV~NHTa~ds~Wl~e 219 (1464)
T TIGR01531 199 VLSITDIVFNHTANNSPWLLE 219 (1464)
T ss_pred CEEEEEeeecccccCCHHHHh
Confidence 799999999999999999995
No 30
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=97.48 E-value=0.00014 Score=60.53 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=21.8
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeEEeCC
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAP 37 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f~~~~ 37 (94)
|+||||+|+|||+..|+ |+. ...+||.+.+
T Consensus 569 I~VILDVVyNHt~~~~~-f~~------~~p~Yy~~~~ 598 (1111)
T TIGR02102 569 MGVILDVVYNHTAKVYI-FED------LEPNYYHFMD 598 (1111)
T ss_pred CEEEEeccccccccccc-ccc------cCCCceEeeC
Confidence 89999999999999875 432 2235776554
No 31
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=97.47 E-value=7.7e-05 Score=59.74 Aligned_cols=37 Identities=14% Similarity=0.393 Sum_probs=31.9
Q ss_pred CEEEEeecCcccCCC---CHHHHHhhhc--CCCCCCeEEeCC
Q psy12584 1 IHLLLSFSPDYSSTK---HEFFQKSVKK--EEPYTNYYVWAP 37 (94)
Q Consensus 1 ikVilD~V~NHts~~---h~WF~~a~~~--~~~~~d~f~~~~ 37 (94)
|.+|+|+|+||++.. .||..++++. +|+|.+||=..-
T Consensus 82 lGlI~DIVPNHMav~g~~N~ww~DVLe~G~~S~ya~yFDI~W 123 (889)
T COG3280 82 LGLIVDIVPNHMAVGGHENPWWWDVLENGRDSAYANYFDIDW 123 (889)
T ss_pred CceEEEecccchhcccccChHHHHHHHhCcCccchhhccccc
Confidence 679999999999866 8999999994 899999995433
No 32
>PLN02960 alpha-amylase
Probab=97.43 E-value=0.00021 Score=58.23 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=16.8
Q ss_pred CEEEEeecCcccCCCCHHH
Q psy12584 1 IHLLLSFSPDYSSTKHEFF 19 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF 19 (94)
|+||||+|+||++.++++.
T Consensus 480 I~VILDvV~NH~~~d~~~~ 498 (897)
T PLN02960 480 LLVFLDIVHSYAAADEMVG 498 (897)
T ss_pred CEEEEEecccccCCccccc
Confidence 8999999999999987643
No 33
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.34 E-value=0.00049 Score=54.55 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.8
Q ss_pred CEEEEeecCcccCCCCHHH
Q psy12584 1 IHLLLSFSPDYSSTKHEFF 19 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF 19 (94)
|+||||+|+||++.++.++
T Consensus 231 i~VilD~v~nH~~~~~~~l 249 (639)
T PRK14706 231 IGVILDWVPGHFPTDESGL 249 (639)
T ss_pred CEEEEEecccccCcchhhh
Confidence 8999999999999987654
No 34
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.28 E-value=0.00036 Score=56.02 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=14.5
Q ss_pred CEEEEeecCcccCCCC
Q psy12584 1 IHLLLSFSPDYSSTKH 16 (94)
Q Consensus 1 ikVilD~V~NHts~~h 16 (94)
|+||||+|+|||+.++
T Consensus 333 i~VIlD~V~nH~~~d~ 348 (730)
T PRK12568 333 IGVILDWVSAHFPDDA 348 (730)
T ss_pred CEEEEEeccccCCccc
Confidence 8999999999999863
No 35
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.09 E-value=0.00063 Score=54.83 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=15.3
Q ss_pred CEEEEeecCcccCCCCH
Q psy12584 1 IHLLLSFSPDYSSTKHE 17 (94)
Q Consensus 1 ikVilD~V~NHts~~h~ 17 (94)
|+||||+|+||+|.++.
T Consensus 314 I~VilDvV~nH~~~~~~ 330 (758)
T PLN02447 314 LRVLMDVVHSHASKNTL 330 (758)
T ss_pred CEEEEEecccccccccc
Confidence 89999999999998754
No 36
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.00 E-value=0.00094 Score=56.26 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.4
Q ss_pred CEEEEeecCcccCCCCHHHHH
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQK 21 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~ 21 (94)
|+||||+|+||++.+. |+..
T Consensus 829 I~VILD~V~nH~~~d~-~~l~ 848 (1224)
T PRK14705 829 IGVLLDWVPAHFPKDS-WALA 848 (1224)
T ss_pred CEEEEEeccccCCcch-hhhh
Confidence 8999999999998774 5543
No 37
>smart00642 Aamy Alpha-amylase domain.
Probab=96.95 E-value=0.00049 Score=45.88 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=13.5
Q ss_pred CEEEEeecCcccCC
Q psy12584 1 IHLLLSFSPDYSST 14 (94)
Q Consensus 1 ikVilD~V~NHts~ 14 (94)
||||+|+|+||||.
T Consensus 84 i~vilD~V~NH~~~ 97 (166)
T smart00642 84 IKVILDVVINHTSD 97 (166)
T ss_pred CEEEEEECCCCCCC
Confidence 79999999999998
No 38
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=96.16 E-value=0.004 Score=47.32 Aligned_cols=21 Identities=0% Similarity=0.146 Sum_probs=19.4
Q ss_pred CEEEEeecCcccCCCCHHHHH
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQK 21 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~ 21 (94)
|..|.|+|+|||+.+++|.++
T Consensus 91 ll~~~DvV~NHtA~nS~Wl~e 111 (423)
T PF14701_consen 91 LLSMTDVVLNHTANNSPWLRE 111 (423)
T ss_pred ceEEEEEeeccCcCCChHHHh
Confidence 568999999999999999994
No 39
>PLN03244 alpha-amylase; Provisional
Probab=95.95 E-value=0.012 Score=48.10 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=16.3
Q ss_pred CEEEEeecCcccCCCCHHH
Q psy12584 1 IHLLLSFSPDYSSTKHEFF 19 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF 19 (94)
|+||||+|+||++.+....
T Consensus 455 I~VILDvV~NH~~~d~~~G 473 (872)
T PLN03244 455 LLVFLDIVHSYAAADEMVG 473 (872)
T ss_pred CEEEEEecCccCCCccccc
Confidence 7999999999999876543
No 40
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=94.37 E-value=0.022 Score=45.78 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=12.7
Q ss_pred CEEEEeecCcccCC
Q psy12584 1 IHLLLSFSPDYSST 14 (94)
Q Consensus 1 ikVilD~V~NHts~ 14 (94)
|.||||+|+|||.-
T Consensus 279 I~VILDVVfNHTae 292 (697)
T COG1523 279 IEVILDVVFNHTAE 292 (697)
T ss_pred CEEEEEEeccCccc
Confidence 78999999999963
No 41
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=84.54 E-value=0.68 Score=37.11 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=16.7
Q ss_pred CEEEEeecCcccCCCCHHHH
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQ 20 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~ 20 (94)
|.||||.|+||.+.+-....
T Consensus 228 IgViLD~V~~HF~~d~~~L~ 247 (628)
T COG0296 228 IGVILDWVPNHFPPDGNYLA 247 (628)
T ss_pred CEEEEEecCCcCCCCcchhh
Confidence 78999999999999665554
No 42
>KOG3625|consensus
Probab=73.51 E-value=1.5 Score=37.11 Aligned_cols=19 Identities=0% Similarity=0.107 Sum_probs=17.3
Q ss_pred EEEeecCcccCCCCHHHHH
Q psy12584 3 LLLSFSPDYSSTKHEFFQK 21 (94)
Q Consensus 3 VilD~V~NHts~~h~WF~~ 21 (94)
-|-|+|+|||..+.+|.++
T Consensus 213 si~DvV~NHtAnns~Wlle 231 (1521)
T KOG3625|consen 213 SITDVVYNHTANNSKWLLE 231 (1521)
T ss_pred eeehhhhhccccCCchhHh
Confidence 4789999999999999985
No 43
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=65.24 E-value=34 Score=24.49 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=19.7
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeEEe
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVW 35 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f~~ 35 (94)
|||++-+.+ +++.+++-|+++.++ +||+-
T Consensus 80 ~~~~~~~~P-~i~~~~~~~~e~~~~-----g~~v~ 108 (308)
T cd06593 80 FKVCLWINP-YIAQKSPLFKEAAEK-----GYLVK 108 (308)
T ss_pred CeEEEEecC-CCCCCchhHHHHHHC-----CeEEE
Confidence 577777765 677788888866543 56654
No 44
>KOG0470|consensus
Probab=52.91 E-value=5.6 Score=32.61 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=12.9
Q ss_pred CEEEEeecCcccCC
Q psy12584 1 IHLLLSFSPDYSST 14 (94)
Q Consensus 1 ikVilD~V~NHts~ 14 (94)
|-|+||.|.||++.
T Consensus 325 I~VlLDVV~sHaa~ 338 (757)
T KOG0470|consen 325 IEVLLDVVHSHAAK 338 (757)
T ss_pred cEEehhhhhhhccc
Confidence 56999999999998
No 45
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=48.89 E-value=1e+02 Score=22.38 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=20.1
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeEEeC
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWA 36 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f~~~ 36 (94)
+|||+-+. -+++..++-|+++.++ ++|+..
T Consensus 80 ~kv~~~i~-P~v~~~~~~y~e~~~~-----g~~v~~ 109 (319)
T cd06591 80 AELMISIW-PTFGPETENYKEMDEK-----GYLIKT 109 (319)
T ss_pred CEEEEEec-CCcCCCChhHHHHHHC-----CEEEEc
Confidence 57777443 5577788888877664 666644
No 46
>KOG2212|consensus
Probab=48.46 E-value=7.1 Score=29.78 Aligned_cols=15 Identities=13% Similarity=-0.002 Sum_probs=12.8
Q ss_pred CccccCCCCHHHHhh
Q psy12584 79 NQADFNFNNPQVVEY 93 (94)
Q Consensus 79 ~~pdLN~~np~V~~~ 93 (94)
++-|||..+.-||..
T Consensus 182 GL~DL~Q~s~~Vr~K 196 (504)
T KOG2212|consen 182 GLLDLAQGSDYVRSK 196 (504)
T ss_pred ecchhhhcchHHHHH
Confidence 588999999999864
No 47
>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [, ]. Alpha-crystallin occurs as large aggregates, comprising two types of related subunits (A and B) that are highly similar to the small (15-30kDa) heat shock proteins (HSPs), particularly in their C-terminal halves. The relationship between these families is one of classic gene duplication and divergence, from the small HSP family, allowing adaptation to novel functions. Divergence probably occurred prior to evolution of the eye lens, alpha-crystallin being found in small amounts in tissues outside the lens []. Alpha-crystallin has chaperone-like properties including the ability to prevent the precipitation of denatured proteins and to increase cellular tolerance to stress []. It has been suggested that these functions are important for the maintenance of lens transparency and the prevention of cataracts. This is supported by the observation that alpha-crystallin mutations show an association with cataract formation. This entry represents the N-terminal domain of alpha-crystallin. It is not necessary for dimerisation or chaperone activity, but appears to be required for the formation of higher order aggregates [, ].; GO: 0005212 structural constituent of eye lens; PDB: 2YGD_P.
Probab=37.04 E-value=11 Score=21.19 Aligned_cols=11 Identities=18% Similarity=0.742 Sum_probs=7.4
Q ss_pred CCCCHHHHHhh
Q psy12584 13 STKHEFFQKSV 23 (94)
Q Consensus 13 s~~h~WF~~a~ 23 (94)
..+||||++..
T Consensus 4 ~IqhPw~rR~~ 14 (59)
T PF00525_consen 4 AIQHPWFRRPL 14 (59)
T ss_dssp EE-HHHHHGGG
T ss_pred cccCccccccc
Confidence 45789999754
No 48
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.44 E-value=1.2e+02 Score=21.73 Aligned_cols=29 Identities=31% Similarity=0.514 Sum_probs=18.0
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeEEe
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVW 35 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f~~ 35 (94)
||+++=+-+ +++.+++-|+++.+. ++++-
T Consensus 84 ~k~~l~i~P-~i~~~s~~~~e~~~~-----g~~vk 112 (303)
T cd06592 84 FRVTLWVHP-FINTDSENFREAVEK-----GYLVS 112 (303)
T ss_pred CeEEEEECC-eeCCCCHHHHhhhhC-----CeEEE
Confidence 466666665 567777888765443 56663
No 49
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=34.08 E-value=23 Score=29.12 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=14.9
Q ss_pred CEEEEeecCcccCCCCHH
Q psy12584 1 IHLLLSFSPDYSSTKHEF 18 (94)
Q Consensus 1 ikVilD~V~NHts~~h~W 18 (94)
|+||+|+|..|.-.+..=
T Consensus 325 IqvIyDlVyGHADNQ~~~ 342 (811)
T PF14872_consen 325 IQVIYDLVYGHADNQALD 342 (811)
T ss_pred eEEEEeeecccccchhhH
Confidence 799999999998876543
No 50
>PHA02818 hypothetical protein; Provisional
Probab=31.84 E-value=4.2 Score=24.64 Aligned_cols=16 Identities=6% Similarity=0.096 Sum_probs=14.0
Q ss_pred EEeecCcccCCCCHHH
Q psy12584 4 LLSFSPDYSSTKHEFF 19 (94)
Q Consensus 4 ilD~V~NHts~~h~WF 19 (94)
++|++++|++.+++|.
T Consensus 22 flDcII~eie~~~~~i 37 (92)
T PHA02818 22 FIECIIQEIEKQQYFI 37 (92)
T ss_pred HHHHHHHHHHccCchh
Confidence 4799999999999993
No 51
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.47 E-value=2.1e+02 Score=20.68 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=19.6
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeEEeC
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWA 36 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f~~~ 36 (94)
+|||+-+ --+++.+++.|+++.++ +||+-.
T Consensus 87 ~k~~~~i-~P~i~~~~~~y~e~~~~-----g~~v~~ 116 (317)
T cd06599 87 IRLAPNI-KPGLLQDHPRYKELKEA-----GAFIKP 116 (317)
T ss_pred CEEEEEe-CCcccCCCHHHHHHHHC-----CcEEEc
Confidence 5777744 44566778888876654 667643
No 52
>KOG1882|consensus
Probab=22.57 E-value=28 Score=25.21 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.2
Q ss_pred EEEEeecCcc--cCCCCHHHH
Q psy12584 2 HLLLSFSPDY--SSTKHEFFQ 20 (94)
Q Consensus 2 kVilD~V~NH--ts~~h~WF~ 20 (94)
++|.|+.+.| ||.+|.-+|
T Consensus 202 rkIaDi~idhpScSKQHaviQ 222 (293)
T KOG1882|consen 202 RKIADIPIDHPSCSKQHAVIQ 222 (293)
T ss_pred eeeeccCCCCccccccceeee
Confidence 5789999999 788898877
No 53
>PRK10658 putative alpha-glucosidase; Provisional
Probab=21.15 E-value=4.6e+02 Score=21.42 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=19.0
Q ss_pred CEEEEeecCcccCCCCHHHHHhhhcCCCCCCeEEe
Q psy12584 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVW 35 (94)
Q Consensus 1 ikVilD~V~NHts~~h~WF~~a~~~~~~~~d~f~~ 35 (94)
+|||+=+.+ +++.+++-|+++.++ +||+-
T Consensus 339 ~k~~~~i~P-~i~~~s~~f~e~~~~-----gy~vk 367 (665)
T PRK10658 339 LKICVWINP-YIAQKSPLFKEGKEK-----GYLLK 367 (665)
T ss_pred CEEEEeccC-CcCCCchHHHHHHHC-----CeEEE
Confidence 466665444 567788888877654 56653
No 54
>KOG4134|consensus
Probab=20.55 E-value=41 Score=24.02 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=22.9
Q ss_pred EEeecCcccCCCCH------HHHHhhhcCCCCCCeE
Q psy12584 4 LLSFSPDYSSTKHE------FFQKSVKKEEPYTNYY 33 (94)
Q Consensus 4 ilD~V~NHts~~h~------WF~~a~~~~~~~~d~f 33 (94)
||..++||+|..|. -|..|+...+.-.||=
T Consensus 110 ~LeG~Vn~vS~sHIglLIhg~FNASIpk~nip~dw~ 145 (253)
T KOG4134|consen 110 ILEGVVNHVSRSHIGLLIHGVFNASIPKTNIPADWE 145 (253)
T ss_pred eeeeeeeecchhhhceeehhhhhccCCCCCCcccee
Confidence 67889999999985 5777777755556773
Done!