RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12584
(94 letters)
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 106 bits (268), Expect = 7e-29
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 12 SSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKE 70
S++HE+F++S K P +++ W PPKGY ++G P+ PNNW S GGSAW ++ + +E
Sbjct: 113 CSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEKTQE 172
Query: 71 FYLHQFGKNQADFNFNNPQV 90
FYL F Q D N+ N
Sbjct: 173 FYLRLFCSTQPDLNWENEDC 192
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 101 bits (253), Expect = 9e-27
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 12 SSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKE 70
+S +H +F +S K PY +YY W K D P PNN+ S GGSAW+ +A+ +
Sbjct: 118 TSDQHPWFIQSKSDKNNPYRDYYFWRDGK----DNQP--PNNYPSFFGGSAWQKDAKSGQ 171
Query: 71 FYLHQFGKNQADFNFNNPQV 90
+YLH F + Q D N++NP+V
Sbjct: 172 YYLHYFARQQPDLNWDNPKV 191
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 100 bits (252), Expect = 9e-27
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 12 SSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKE 70
+S +H +F +S K K+ Y +YY+W P K +G PNNW + GSAW+++ E
Sbjct: 104 TSDEHNWFIESRKSKDNKYRDYYIWRPGK----EGKE--PNNWGAAFSGSAWQYDEMTDE 157
Query: 71 FYLHQFGKNQADFNFNNPQV 90
+YLH F K Q D N++N +V
Sbjct: 158 YYLHLFSKKQPDLNWDNEKV 177
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 100 bits (252), Expect = 1e-26
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 12 SSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKE 70
SS +HE+F+ S K+ PY +YY W K DG PNN+ S GGSAWE + +
Sbjct: 105 SSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGHE--PNNYPSFFGGSAWEKDPVTGQ 158
Query: 71 FYLHQFGKNQADFNFNNPQV 90
+YLH FG+ Q D N++ P++
Sbjct: 159 YYLHYFGRQQPDLNWDTPKL 178
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 100 bits (252), Expect = 1e-26
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 12 SSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKE 70
+S +H +F +S ++ P ++Y+W K DG PNNW S GGSAW+++ +
Sbjct: 104 TSDEHPWFIESRSSRDNPKRDWYIWRDGK----DGRE--PNNWESIFGGSAWQYDERTGQ 157
Query: 71 FYLHQFGKNQADFNFNNPQV 90
+YLH F Q D N+ N +V
Sbjct: 158 YYLHIFDVKQPDLNWENSEV 177
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 98.0 bits (245), Expect = 6e-26
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 12 SSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEF 71
+ H +FQK++K + Y +YYVWA + D W +G W E F
Sbjct: 95 TGFLHTWFQKALKGDPHYRDYYVWANKET---DLDE--RREW---DGEKIWHPL-EDGRF 145
Query: 72 YLHQFGKNQADFNFNNPQVVE 92
Y FG D N++NPQV +
Sbjct: 146 YRGLFGPFSPDLNYDNPQVFD 166
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 94.5 bits (236), Expect = 2e-24
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 12 SSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKE 70
+S +H +F ++ + + +YY+W PN+ S GGSAW+++ + +
Sbjct: 104 TSDEHAWFIEAREHPDSSERDYYIWCDQ-----------PNDLESIFGGSAWQYDDKSDQ 152
Query: 71 FYLHQFGKNQADFNFNNPQVVE 92
+YLH F K Q D N+ N + +
Sbjct: 153 YYLHFFSKKQPDLNWENANLRQ 174
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 92.3 bits (230), Expect = 1e-23
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
I +++ +++S +H +F K+ + K Y +YYVWA P +GG
Sbjct: 96 IKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPD---------TDTKETKLDGG 146
Query: 60 SAWEWNAERKEFYLHQFGKNQADFNFNNPQVVE 92
W + Y F D N+NNP+V E
Sbjct: 147 RVWHY--SPTGMYYGYFWSGMPDLNYNNPEVQE 177
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 74.8 bits (184), Expect = 2e-17
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 25/108 (23%)
Query: 12 SSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKE 70
+ T H +F ++ E PY NYY ++ +A G +A EW E
Sbjct: 132 TGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEWFQVSDE 191
Query: 71 FY------------------------LHQFGKNQADFNFNNPQVVEYF 94
+ ++ D +N + + Y
Sbjct: 192 TAAVKGLLKFTLDWSNAPSPILVVSTGTKADEDNPDTGTDNAKYLYYG 239
Score = 57.8 bits (140), Expect = 1e-11
Identities = 6/83 (7%), Positives = 20/83 (24%), Gaps = 15/83 (18%)
Query: 12 SSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKE 70
+S + + + K + + +++++
Sbjct: 270 TSNASFWPSGTKYGASSSSEKLALNKDFK-------------LTNAGNPANIMFDSQQIT 316
Query: 71 FYLHQF-GKNQADFNFNNPQVVE 92
++ F AD N+
Sbjct: 317 YFHSHFCTDWFADLNYGPVDQAG 339
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A
{Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A*
2wpg_A
Length = 644
Score = 71.5 bits (175), Expect = 2e-16
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 12 SSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG-------SAWEW 64
++ H + Q + + Y +YY + P+ + + G + W
Sbjct: 181 TADDHAWAQAARAGDARYLDYYHHFADRT--------VPDRYEATLGQVFPHTAPGNFTW 232
Query: 65 NAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
+ ++ F Q D N++NP V
Sbjct: 233 VDDTAQWMWTTFYPYQWDLNWSNPAVFGDM 262
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose
isomerization, beta/alpha-barrel, carbohydrate binding,
transferase; 1.97A {Deinococcus geothermalis} PDB:
3uer_A*
Length = 655
Score = 64.5 bits (157), Expect = 5e-14
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 12 SSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKE- 70
+ +H + QK+ + Y Y+ P + P + + W+ E E
Sbjct: 186 VAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIF-PDFAPGNFSWDEEIGEG 244
Query: 71 ---FYLHQFGKNQADFNFNNPQVVEYF 94
+ F Q D N+ NP V F
Sbjct: 245 EGGWVWTTFNSYQWDLNWANPDVFLEF 271
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 57.8 bits (140), Expect = 2e-11
Identities = 10/93 (10%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVK----KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSK 56
+ ++ P++ + H ++ + Y NY+ + + + +
Sbjct: 78 LGIIQDIVPNHMAVHHTNWRLMDVLKKGRHSRYYNYFDFYEEEE------KIRIPILGDR 131
Query: 57 EGGSAWEWNAERKEFYLHQFGKNQADFNFNNPQ 89
+ + ++Y + F N N+ N
Sbjct: 132 NFKITYVNDEPYLDYYGNLFPINDEGRNYLNDI 164
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase,
(beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria
polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A*
1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A*
1s46_A* 1zs2_A*
Length = 628
Score = 57.5 bits (139), Expect = 2e-11
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 10/87 (11%)
Query: 12 SSTKHEFFQKSVKKEEPYTN-YYVWAPPKGYSSDGTPLAPNNWLSKEGG---SAWEWNAE 67
+S +HE+ Q+ + + N YY++ + E
Sbjct: 188 TSNEHEWAQRCAAGDPLFDNFYYIFPDR-----RMPDQYDRTLREIFPDQHPGGFSQ-LE 241
Query: 68 RKEFYLHQFGKNQADFNFNNPQVVEYF 94
+ F Q D N++NP V
Sbjct: 242 DGRWVWTTFNSFQWDLNYSNPWVFRAM 268
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 53.6 bits (129), Expect = 3e-10
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEE--PYTNYYVWA--PPKGYSSDGTPLAPNNWLSK 56
I ++L + +++ +E F K++++ E PY + + PPK
Sbjct: 326 IKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPPKEIVELMLKYIDGEECRS 385
Query: 57 EGGSAWEWNAERKEFYLHQFG-KNQADFNFNNPQVVEYF 94
++ K FY F A FN +NP+ V+YF
Sbjct: 386 RELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYF 424
>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside
hydrolase, transferase; 1.77A {Bifidobacterium
adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A*
2gdu_A*
Length = 504
Score = 50.6 bits (121), Expect = 4e-09
Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 21/94 (22%)
Query: 13 STKHEFFQKSVKKEE--PYTNYYVWA----PPKGYSSD------GTPLAPNNWLSKEGGS 60
S + + FQ + K E Y ++ P D P P G +
Sbjct: 90 SWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKT 149
Query: 61 AWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
W F Q D + ++ + EY
Sbjct: 150 RLVW---------VSFTPQQVDIDTDSDKGWEYL 174
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 46.1 bits (109), Expect = 2e-07
Identities = 8/82 (9%), Positives = 24/82 (29%), Gaps = 2/82 (2%)
Query: 1 IHLLLSFSPDYSSTKHE-FFQKSVKKEEPYTNYYVWAPPK-GYSSDGTPLAPNNWLSKEG 58
+ ++ P++ + + V + YY + P+ + +
Sbjct: 80 LGIIQDIVPNHMAVNSLNWRLMDVLXMGXXSXYYTYFDFFPEDDKIRLPILGEDLDTVIS 139
Query: 59 GSAWEWNAERKEFYLHQFGKNQ 80
+ + E++L F
Sbjct: 140 KGLLKIVKDGDEYFLEYFKWKL 161
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 38.1 bits (89), Expect = 1e-04
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 24/96 (25%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEE--PYTNYYVWAPPKGYSSDGTPLAPNNWLSKEG 58
+ ++L +++ FQ ++ E PY ++Y G P + +
Sbjct: 111 VRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHV--------KGFP--LKAYTAHPN 160
Query: 59 GSAWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
AW P V EY
Sbjct: 161 YEAWW------------GNPELPKLKVETPAVREYL 184
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 37.0 bits (86), Expect = 3e-04
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVK-KEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGG 59
I ++L +P+Y ++ +F V + + G DG + + +
Sbjct: 96 IRVILDLTPNYRG-ENSWFSTQVDTVATKVKDALEFWLQAGV--DGFQ--VRDIENLKDA 150
Query: 60 SAW--EWNAERKEFYLHQF 76
S++ EW K F +
Sbjct: 151 SSFLAEWQNITKGFSEDRL 169
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 35.6 bits (82), Expect = 8e-04
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 14/94 (14%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGS 60
+ L+ + H + + P + + G P
Sbjct: 213 MGLIQDVVLSHIGKHHWWMKD--------------LPTPDWINYGGKFVPTQHHRVAVQD 258
Query: 61 AWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
+ A+ + F F + D N NP V Y
Sbjct: 259 PYAAQADSENFTKGWFVEGMPDLNQTNPLVANYL 292
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 34.8 bits (80), Expect = 0.002
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 25 KEEPYTNY-YVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEW--NAERKEFYLHQFGKNQA 81
+ Y+++ + W G D + + + G AW+W ++E + + A
Sbjct: 144 RGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMY----A 199
Query: 82 DFNFNNPQVVEYF 94
D ++++P VV
Sbjct: 200 DVDYDHPDVVAET 212
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 34.4 bits (79), Expect = 0.002
Identities = 13/110 (11%), Positives = 23/110 (20%), Gaps = 32/110 (29%)
Query: 13 STKHEFFQKSVKKEE-------PYTNYYVWAP------PKGYSS---------------D 44
+ E+ W YSS
Sbjct: 110 ADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDES 169
Query: 45 GTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
+ WE + E + + AD + ++P+VV
Sbjct: 170 RKLSRIYKFRGIGKAWDWEVDTENGNYDYLMY----ADLDMDHPEVVTEL 215
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 34.3 bits (79), Expect = 0.003
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 24/96 (25%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEE--PYTNYYVWAPPKGYSSDGTPLAPNNWLSKEG 58
I ++L +++ + F+ ++K E Y +++ P + S+
Sbjct: 234 IKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDF-----------PVSKTSRTN 282
Query: 59 GSAWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
+ NP+V EY
Sbjct: 283 YETFAV-----------QVPAMPKLRTENPEVKEYL 307
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 33.6 bits (76), Expect = 0.004
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 27 EPYTNYYVWAPPK--GYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFYLHQF 76
EP+ N + PP +S + N+ + + W+A K +Y+ QF
Sbjct: 169 EPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYV-QF 219
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 33.1 bits (76), Expect = 0.006
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEE--PYTNYYVWAPPKGYSSDGTPLAPNNWLSKEG 58
I ++L ++SS FF ++ P+ N++ +G PL+P N
Sbjct: 117 IKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKI--------EGWPLSPYNGEFPAN 168
Query: 59 GSAWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
W N + +FN +NP+V EY
Sbjct: 169 YVGWAGN------------RALPEFNHDNPEVREYI 192
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
1ud6_A 1ud8_A 1ud3_A
Length = 480
Score = 32.9 bits (75), Expect = 0.007
Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 25 KEEPYTNY-YVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGKNQADF 83
+ Y+++ + W G D + + W + E + ++
Sbjct: 146 RNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLG----SNI 201
Query: 84 NFNNPQVVEYF 94
+F++P+V +
Sbjct: 202 DFSHPEVQDEL 212
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 32.5 bits (74), Expect = 0.010
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 12/83 (14%)
Query: 12 SSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEF 71
+S E ++ Y N + Y++D +N + F
Sbjct: 137 TSPASETNPSYMENGRLYDNGTLLGG---YTNDANMYFHHNGGTTFSSLEDGIYRN--LF 191
Query: 72 YLHQFGKNQADFNFNNPQVVEYF 94
L AD N NP + Y
Sbjct: 192 DL-------ADLNHQNPVIDRYL 207
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.024
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 9/33 (27%)
Query: 20 QKSVKKEEPYTNYYVWAPPKGYSSDGTP-LAPN 51
++++KK + A K Y+ D P LA
Sbjct: 19 KQALKKLQ--------ASLKLYADDSAPALAIK 43
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 31.1 bits (70), Expect = 0.033
Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 12/89 (13%)
Query: 18 FFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAW-EWNAERKEFYLHQF 76
+++P W +G G+ W +++ E ++ +
Sbjct: 243 VLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDEK 302
Query: 77 GKN-----------QADFNFNNPQVVEYF 94
+ AD ++ N V
Sbjct: 303 SWDWTYNWDEDYLMGADVDYENEAVQNDV 331
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA;
1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB:
2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Length = 478
Score = 30.4 bits (69), Expect = 0.065
Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 30 TNYYVWAPPKGYSSDGTPLAPNNWLSKEGG-SAWEWNAERKEFYLHQFGKNQADFNFNNP 88
Y YS P + ++ +E + ++ +L + D +
Sbjct: 123 MGYDGAGSSVDYS-VFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLPDLDTTKD 181
Query: 89 QVVEYF 94
V +
Sbjct: 182 VVKNEW 187
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 29.9 bits (67), Expect = 0.078
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 25 KEEPYTNY-YVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGKNQADF 83
+ ++++ + W G D + NN + K G W+ E + AD
Sbjct: 148 RGNTHSSFKWRWYHFDGVDWDQSR-RLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADI 206
Query: 84 NFNNPQVVEYF 94
+ ++P+VV
Sbjct: 207 DMDHPEVVNEL 217
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 28.9 bits (65), Expect = 0.17
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 24/96 (25%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEE--PYTNYYVWAPPKGYSSDGTPLAPNNWLSKEG 58
I +LL ++S F +K E Y +++ DG P
Sbjct: 233 IRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIP----------T 282
Query: 59 GSAWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
+ F N +P V EY
Sbjct: 283 YDTFA------------FEPLMPKLNTEHPDVKEYL 306
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 29.0 bits (65), Expect = 0.17
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 17/89 (19%)
Query: 12 SSTKHEFFQKSVKKEEPY------TNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWN 65
S+ + Y NY+ A + +G ++ + W+
Sbjct: 133 STPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGDISNWDDRYEAQ----WKNF 188
Query: 66 AERKEFYLHQFGKNQADFNFNNPQVVEYF 94
+ F L AD + N + +Y
Sbjct: 189 TDPAGFSL-------ADLSQENGTIAQYL 210
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 28.6 bits (64), Expect = 0.24
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 12/83 (14%)
Query: 12 SSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWLSKEGGSAWEWNAERKEF 71
+S + Y N GY++D L +N + + +
Sbjct: 141 TSPASSDQPSFAENGRLYDN---GTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKN--LY 195
Query: 72 YLHQFGKNQADFNFNNPQVVEYF 94
L AD N NN V Y
Sbjct: 196 DL-------ADLNHNNSTVDVYL 211
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 28.5 bits (64), Expect = 0.28
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 25/96 (26%)
Query: 1 IHLLLSFSPDYSSTKHEFFQKSVKKEE--PYTNYYVWAPPKGYSSDGTPLAPNNWLSKEG 58
I ++L ++ + FQ K E Y +++ P +
Sbjct: 237 IRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEF-----------PLQTEPRPN 285
Query: 59 GSAWEWNAERKEFYLHQFGKNQADFNFNNPQVVEYF 94
+ + N NP+V Y
Sbjct: 286 YDTFAFV------------PQMPKLNTANPEVKRYL 309
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 27.3 bits (61), Expect = 0.73
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 10/42 (23%)
Query: 63 EWNAERKEFYLH-QFGKN---------QADFNFNNPQVVEYF 94
E E++ H G+ D ++ + ++ +Y
Sbjct: 114 VLATEHPEWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQ 155
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 26.7 bits (59), Expect = 1.3
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 15/70 (21%)
Query: 40 GYSSDGTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGKNQ---------------ADFN 84
+S+ P N + G+ Y H +G AD N
Sbjct: 143 SPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLN 202
Query: 85 FNNPQVVEYF 94
N + Y
Sbjct: 203 QQNSTIDSYL 212
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP:
b.71.1.1 c.1.8.1
Length = 484
Score = 26.2 bits (58), Expect = 1.5
Identities = 7/66 (10%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
Query: 30 TNYYVWAPPKGYSSDGTPLAPNNWLSKEGG-SAWEWNAERKEFYLHQFGKNQADFNFNNP 88
Y YS P +++ + W+ ++ + + D +
Sbjct: 123 MGYAGNGNDVDYS-VFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDTTET 181
Query: 89 QVVEYF 94
V +
Sbjct: 182 AVRTIW 187
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 24.7 bits (54), Expect = 4.1
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 45 GTPLAPNNWLSKEGGSAWEWNAERKEFYLHQFGKNQADFNFNN 87
G L +E S + + + +++A F ++
Sbjct: 32 GPVGVQTFRLERESRSTYNDTEDVSQ---ASPSESEARFRIDS 71
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 25.2 bits (56), Expect = 4.3
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 63 EWNAERKEFYLHQFGKNQADFNFNNPQ 89
+N F ++ DF+ N+ +
Sbjct: 231 AFNQRFLWFLQKTVQEHYQDFDKNSVR 257
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 5.1
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 65 NAERKEFYLHQFGKNQADF----NFN--NPQVV 91
+ E ++ + + GK N+N N Q V
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling,
hedgehog VIA CO- immunoprecipitation, membrane protein;
2.40A {Drosophila melanogaster}
Length = 506
Score = 24.8 bits (53), Expect = 5.7
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 64 WNAERKEFYLHQFGKNQADFNFNNPQV 90
WN + Y+H +NP+
Sbjct: 443 WNGHTIDRYMHSITTEHG----SNPEF 465
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20,
GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X
2epm_X 2epn_A* 2epo_A
Length = 627
Score = 25.0 bits (54), Expect = 5.7
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 10 DYSSTKHEFFQKSVKKEEPYTNYYVWAPPKGYSSDGTPLAPNNWL 54
DY E + ++ + + +A TP + L
Sbjct: 308 DYYQDSEEKYNRNFQNHHKISQDIAFAGGAWKWIGFTPHNHFSRL 352
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.433
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,494,507
Number of extensions: 72789
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 94
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.9 bits)