BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12585
         (146 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
          Length = 316

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 33/60 (55%)

Query: 27  PMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELLPKDYGG 86
           P RFK   FI+ P    T   +VK FL  KL +RVFV   D +  Y+ I   +LP D+GG
Sbjct: 231 PARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG 290


>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
           Human Alpha-tocopherol Transfer Protein
 pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
           Human Alpha-Tocopherol Transfer Protein
 pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
           Human Alpha-Tocopherol Transfer Protein
          Length = 278

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 27  PMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDH-TSLYEHIPRELLPKDYG 85
           P++ +    IN P     +  ++K FL +K+++R+ +   ++  SL +H P ++LP +YG
Sbjct: 188 PLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYG 246

Query: 86  GDDISLEEMTENWRKELLAHRDWF 109
           G++ S+E++ + W   ++   D+ 
Sbjct: 247 GEEFSMEDICQEWTNFIMKSEDYL 270


>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
          Length = 316

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 32/61 (52%)

Query: 26  MPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELLPKDYG 85
            P  FK   FI+ P    T   +VK FL  KL +RVFV   D +  Y+ I   +LP D+G
Sbjct: 230 FPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFG 289

Query: 86  G 86
           G
Sbjct: 290 G 290


>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
           Protein Bound To Its Ligand
          Length = 262

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 26  MPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDH-TSLYEHIPRELLPKDY 84
            P++ +    IN P     +   +K FL +K+++R+     ++  SL +H P ++LP +Y
Sbjct: 171 FPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKERIHXHGNNYKQSLLQHFP-DILPLEY 229

Query: 85  GGDDISLEEMTENWRKELLAHRDWF 109
           GG++ S E++ + W   +    D+ 
Sbjct: 230 GGEEFSXEDICQEWTNFIXKSEDYL 254


>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
           Protein From A Pseudo-Sec14 Scaffold By Directed
           Evolution
          Length = 320

 Score = 33.1 bits (74), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 27  PMRFKCGLFINAPPGLETLVYIVKQFL-PDKLQKRVFVSSGDHTSLYEHIPRELLPKDYG 85
           P R      I++P G  T+  +VK FL P  + K   + S     L + IP E LP  YG
Sbjct: 218 PERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYG 277

Query: 86  GDDI 89
           G  +
Sbjct: 278 GTSV 281


>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
           With Phosphatidylethanolamine
 pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
           With Phosphatidylinositol
 pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
           With Phosphatidylcholine
 pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
           With Phosphatidylcholine
 pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
           With Phosphatidylcholine Or Phosphatidylinositol
          Length = 320

 Score = 33.1 bits (74), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 27  PMRFKCGLFINAPPGLETLVYIVKQFL-PDKLQKRVFVSSGDHTSLYEHIPRELLPKDYG 85
           P R      I++P G  T+  +VK FL P  + K   + S     L + IP E LP  YG
Sbjct: 218 PERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYG 277

Query: 86  GDDI 89
           G  +
Sbjct: 278 GTSV 281


>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
           Saccharomyces Cerevisiae
          Length = 296

 Score = 32.3 bits (72), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 27  PMRFKCGLFINAPPGLETLVYIVKQFL-PDKLQKRVFVSSGDHTSLYEHIPRELLPKDYG 85
           P R      INAP G  T   + K FL P  + K   + S     L + IP E LP  +G
Sbjct: 203 PERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFG 262

Query: 86  G 86
           G
Sbjct: 263 G 263


>pdb|3HHS|A Chain A, Crystal Structure Of Manduca Sexta Prophenoloxidase
          Length = 694

 Score = 28.9 bits (63), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 57  LQKRVFVSSGDHTSLY-EHIPRE--LLPKDYGGDDISLEEMTENWRKEL---LAHRDWFL 110
           L  +VF  + +  ++  + IPR   ++P+DY   D+  E     WR++L   L H  W L
Sbjct: 160 LDSQVFTQAREAAAVIPKTIPRTPIIIPRDYTATDLEEEHRLAYWREDLGINLHHWHWHL 219

Query: 111 DPTNRRSDE 119
                 SDE
Sbjct: 220 VYPFSASDE 228


>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
           Typhimurium Ycbl
          Length = 210

 Score = 25.8 bits (55), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)

Query: 66  GDHTSLYEHIPRELLPKDYGGDDIS 90
           GDHT L + I R+LLP    GDD++
Sbjct: 166 GDHTQLIDAIKRKLLPL---GDDVT 187


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.140    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,725,064
Number of Sequences: 62578
Number of extensions: 197856
Number of successful extensions: 408
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 9
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)