Query psy12585
Match_columns 146
No_of_seqs 177 out of 1148
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:06:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r5l_A Alpha-TTP, protein (alp 99.9 1E-27 3.5E-32 188.5 9.0 107 7-114 149-259 (262)
2 3hx3_A Retinaldehyde-binding p 99.9 2.4E-24 8.3E-29 175.4 5.4 98 5-104 206-306 (316)
3 1aua_A Phosphatidylinositol tr 99.9 3.7E-22 1.3E-26 160.1 5.5 78 14-91 189-268 (296)
4 1olm_A SEC14-like protein 2; l 99.8 6.1E-21 2.1E-25 159.1 5.8 75 16-90 171-247 (403)
5 3q8g_A CRAL-TRIO domain-contai 99.8 3.4E-21 1.2E-25 157.3 2.9 76 15-90 205-282 (320)
6 3pg7_A Neurofibromin; SEC lipi 96.9 0.00051 1.7E-08 54.1 3.1 62 18-80 81-144 (256)
7 3peg_A Neurofibromin; SEC14 do 94.6 0.005 1.7E-07 49.3 -0.5 62 18-80 100-163 (290)
8 3sbx_A Putative uncharacterize 61.7 12 0.00043 27.6 4.8 57 18-77 127-189 (189)
9 3qua_A Putative uncharacterize 50.8 23 0.00079 26.4 4.8 57 18-77 136-198 (199)
10 2vqe_B 30S ribosomal protein S 42.3 44 0.0015 25.9 5.3 67 25-94 32-108 (256)
11 2oo3_A Protein involved in cat 38.6 13 0.00046 29.3 1.8 29 31-59 238-266 (283)
12 2a33_A Hypothetical protein; s 37.9 45 0.0016 24.9 4.7 56 18-76 128-189 (215)
13 1ydh_A AT5G11950; structural g 30.2 80 0.0028 23.6 4.9 56 18-76 124-185 (216)
14 3u5c_A 40S ribosomal protein S 30.1 46 0.0016 25.9 3.6 68 25-92 37-111 (252)
15 2xzm_B RPS0E; ribosome, transl 30.0 50 0.0017 25.4 3.8 65 25-92 33-108 (241)
16 3bbn_B Ribosomal protein S2; s 29.0 65 0.0022 24.5 4.2 68 25-94 31-107 (231)
17 1t35_A Hypothetical protein YV 28.5 49 0.0017 24.1 3.4 45 31-76 128-177 (191)
18 3j20_B 30S ribosomal protein S 27.7 63 0.0021 24.1 3.9 65 23-91 29-104 (202)
19 3iz6_A 40S ribosomal protein S 24.4 37 0.0013 27.2 2.2 45 23-67 39-84 (305)
20 2ixm_A Serine/threonine-protei 24.2 29 0.00099 27.7 1.5 48 57-111 55-102 (303)
21 3bch_A 40S ribosomal protein S 23.3 48 0.0016 25.8 2.6 67 25-91 71-144 (253)
22 1vi6_A 30S ribosomal protein S 22.5 62 0.0021 24.3 3.0 67 25-92 36-109 (208)
23 2zkq_b 40S ribosomal protein S 20.2 44 0.0015 26.6 1.8 67 25-91 38-111 (295)
No 1
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.94 E-value=1e-27 Score=188.50 Aligned_cols=107 Identities=21% Similarity=0.546 Sum_probs=97.1
Q ss_pred cCccccCCH--HHHHHHHHh-hcchhccceeEEeCChHHHHHHHHHHHhCCchhhcceeecCCCh-hhHhhhCCCCCCCc
Q psy12585 7 CGLFINAPP--GLETLVYIK-IMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDH-TSLYEHIPRELLPK 82 (146)
Q Consensus 7 ~~~~~~~~p--~~~~~~~~q-~~P~Rlk~ihiiN~P~~~~~i~~~vkpfl~~k~~~rI~~~~~~~-e~L~~~i~~~~LP~ 82 (146)
++++.++++ .++++.++| +||+|++++||||+|++|+.+|+++||||+++|++||+|||+++ ++|+++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 345554443 569999999 99999999999999999999999999999999999999997774 89999999 99999
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcHHHhcccCC
Q psy12585 83 DYGGDDISLEEMTENWRKELLAHRDWFLDPTN 114 (146)
Q Consensus 83 eyGG~~~~~~~l~~~w~~~l~~~r~~~~~~~~ 114 (146)
+|||+.++++++++.|.+.++++|+||.+.+.
T Consensus 228 ~yGG~~~~~~~~~~~w~~~l~~~~~~~~~~~~ 259 (262)
T 1r5l_A 228 EYGGEEFSMEDICQEWTNFIMKSEDYLSSISE 259 (262)
T ss_dssp GGTCSSCCHHHHHHHHHHHHHHTHHHHHHTCC
T ss_pred hhCCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999987543
No 2
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.89 E-value=2.4e-24 Score=175.36 Aligned_cols=98 Identities=28% Similarity=0.422 Sum_probs=86.9
Q ss_pred cccCccccCCH--HHHHHHHHh-hcchhccceeEEeCChHHHHHHHHHHHhCCchhhcceeecCCChhhHhhhCCCCCCC
Q psy12585 5 FKCGLFINAPP--GLETLVYIK-IMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELLP 81 (146)
Q Consensus 5 ~~~~~~~~~~p--~~~~~~~~q-~~P~Rlk~ihiiN~P~~~~~i~~~vkpfl~~k~~~rI~~~~~~~e~L~~~i~~~~LP 81 (146)
+.++|+.+++| .++++.++| +||+|++++||||+|++|+.+|+++||||++++++||+|||+++++|+++||+++||
T Consensus 206 ~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~LP 285 (316)
T 3hx3_A 206 FTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILP 285 (316)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGSB
T ss_pred CCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhCc
Confidence 34556666655 469999999 999999999999999999999999999999999999999988899999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHh
Q psy12585 82 KDYGGDDISLEEMTENWRKELLA 104 (146)
Q Consensus 82 ~eyGG~~~~~~~l~~~w~~~l~~ 104 (146)
++|||++++.+ ++.|.+.|..
T Consensus 286 ~eyGG~~~~~d--~~~~~~~l~~ 306 (316)
T 3hx3_A 286 SDFGGTLPKYD--GKAVAEQLFG 306 (316)
T ss_dssp GGGTSSBCCCC--HHHHHHHHC-
T ss_pred HhhCCCCCCcC--hhHHHHHHcC
Confidence 99999997665 6788887754
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.85 E-value=3.7e-22 Score=160.12 Aligned_cols=78 Identities=27% Similarity=0.364 Sum_probs=72.0
Q ss_pred CHHHHHHHHHh-hcchhccceeEEeCChHHHHHHHHHHHhCCchhhcceeecCCC-hhhHhhhCCCCCCCccCCCCCCCh
Q psy12585 14 PPGLETLVYIK-IMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGD-HTSLYEHIPRELLPKDYGGDDISL 91 (146)
Q Consensus 14 ~p~~~~~~~~q-~~P~Rlk~ihiiN~P~~~~~i~~~vkpfl~~k~~~rI~~~~~~-~e~L~~~i~~~~LP~eyGG~~~~~ 91 (146)
+..++++.++| +||+|++++||||+|++|+++|+++||||+++|++||+|||++ .++|+++||+++||++|||++...
T Consensus 189 ~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~ 268 (296)
T 1aua_A 189 SYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVD 268 (296)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCCC
T ss_pred HHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhCCCCCCC
Confidence 34558899999 9999999999999999999999999999999999999999776 478999999999999999999654
No 4
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.82 E-value=6.1e-21 Score=159.12 Aligned_cols=75 Identities=24% Similarity=0.400 Sum_probs=71.1
Q ss_pred HHHHHHHHh-hcchhccceeEEeCChHHHHHHHHHHHhCCchhhcceeecCCCh-hhHhhhCCCCCCCccCCCCCCC
Q psy12585 16 GLETLVYIK-IMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDH-TSLYEHIPRELLPKDYGGDDIS 90 (146)
Q Consensus 16 ~~~~~~~~q-~~P~Rlk~ihiiN~P~~~~~i~~~vkpfl~~k~~~rI~~~~~~~-e~L~~~i~~~~LP~eyGG~~~~ 90 (146)
.++++.++| +||+|++++||||+|++|+++|+++||||+++|++||+||++++ ++|+++||+++||++|||++.+
T Consensus 171 ~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~yGG~~~~ 247 (403)
T 1olm_A 171 YGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTD 247 (403)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGGTSSBCC
T ss_pred HHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhhCCCcCC
Confidence 469999999 99999999999999999999999999999999999999997675 6899999999999999999965
No 5
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.81 E-value=3.4e-21 Score=157.29 Aligned_cols=76 Identities=26% Similarity=0.393 Sum_probs=71.4
Q ss_pred HHHHHHHHHh-hcchhccceeEEeCChHHHHHHHHHHHhCCchhhcceeecCCCh-hhHhhhCCCCCCCccCCCCCCC
Q psy12585 15 PGLETLVYIK-IMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDH-TSLYEHIPRELLPKDYGGDDIS 90 (146)
Q Consensus 15 p~~~~~~~~q-~~P~Rlk~ihiiN~P~~~~~i~~~vkpfl~~k~~~rI~~~~~~~-e~L~~~i~~~~LP~eyGG~~~~ 90 (146)
..++++.++| +||+|++++||||+|++|+.+|+++||||++++++||+|||+++ ++|.++||+++||++|||+++.
T Consensus 205 ~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~ 282 (320)
T 3q8g_A 205 YIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVL 282 (320)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGSBGGGTSCBCC
T ss_pred HHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhCChhhCCCCCC
Confidence 3558999999 99999999999999999999999999999999999999998774 8999999999999999999954
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=96.89 E-value=0.00051 Score=54.09 Aligned_cols=62 Identities=16% Similarity=0.026 Sum_probs=51.5
Q ss_pred HHHHHHh-hcchhccceeEEeCChHHHHHHH-HHHHhCCchhhcceeecCCChhhHhhhCCCCCC
Q psy12585 18 ETLVYIK-IMPMRFKCGLFINAPPGLETLVY-IVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELL 80 (146)
Q Consensus 18 ~~~~~~q-~~P~Rlk~ihiiN~P~~~~~i~~-~vkpfl~~k~~~rI~~~~~~~e~L~~~i~~~~L 80 (146)
++..++. .|...++++||+|+++++...+. +.++|.+.+..+++++. ++.++|.++|+.+.|
T Consensus 81 ~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv-~sl~eL~~~i~~~~L 144 (256)
T 3pg7_A 81 KWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFI-DCPGKLAEHIEHEQQ 144 (256)
T ss_dssp HTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEE-SSTTGGGGTSCGGGC
T ss_pred HHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEE-CCHHHHHhhcCHHHc
Confidence 5556666 77788999999999999986654 46778877999999999 789999999988766
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=94.57 E-value=0.005 Score=49.34 Aligned_cols=62 Identities=18% Similarity=0.079 Sum_probs=44.0
Q ss_pred HHHHHHh-hcchhccceeEEeCChHHHHHH-HHHHHhCCchhhcceeecCCChhhHhhhCCCCCC
Q psy12585 18 ETLVYIK-IMPMRFKCGLFINAPPGLETLV-YIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELL 80 (146)
Q Consensus 18 ~~~~~~q-~~P~Rlk~ihiiN~P~~~~~i~-~~vkpfl~~k~~~rI~~~~~~~e~L~~~i~~~~L 80 (146)
++..++. .|+.+++++|++|++.+|.... ...+++.+.+..+|+.++ ++..+|..+++++++
T Consensus 100 ~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~-~~~~~L~~~i~~~~~ 163 (290)
T 3peg_A 100 KWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFI-DCPGKLAEHIEHEQQ 163 (290)
T ss_dssp GGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEE-SSSCC----------
T ss_pred HHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEc-CCHHHHHhhCCHHHh
Confidence 6777777 8899999999999999988754 577888888999999998 666778888887643
No 8
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=61.67 E-value=12 Score=27.64 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=43.0
Q ss_pred HHHHHHh-hcchhccceeEEeCChHHHHHHHHHH-----HhCCchhhcceeecCCChhhHhhhCCC
Q psy12585 18 ETLVYIK-IMPMRFKCGLFINAPPGLETLVYIVK-----QFLPDKLQKRVFVSSGDHTSLYEHIPR 77 (146)
Q Consensus 18 ~~~~~~q-~~P~Rlk~ihiiN~P~~~~~i~~~vk-----pfl~~k~~~rI~~~~~~~e~L~~~i~~ 77 (146)
.++.+.| .. .-|-|.++|..-+.+-+++++. -|++++-++.+++. +|.+++.+.+.|
T Consensus 127 e~lt~~qlg~--~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~-d~~ee~~~~l~~ 189 (189)
T 3sbx_A 127 DVWTEGYLGM--HDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVV-DNLDDALQACAP 189 (189)
T ss_dssp HHHHHHHTTS--CCCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEE-SSHHHHHHHHCC
T ss_pred HHHHHHHhcc--cCCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEe-CCHHHHHHHhcC
Confidence 4445556 54 3478999999878787777665 37888999999998 889998887653
No 9
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=50.77 E-value=23 Score=26.36 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=43.3
Q ss_pred HHHHHHh-hcchhccceeEEeCChHHHHHHHHHHH-----hCCchhhcceeecCCChhhHhhhCCC
Q psy12585 18 ETLVYIK-IMPMRFKCGLFINAPPGLETLVYIVKQ-----FLPDKLQKRVFVSSGDHTSLYEHIPR 77 (146)
Q Consensus 18 ~~~~~~q-~~P~Rlk~ihiiN~P~~~~~i~~~vkp-----fl~~k~~~rI~~~~~~~e~L~~~i~~ 77 (146)
.++.+.| ... -|-|.++|..-+.+-+++++.. |++++-++.+++. +|.+++.+.+.+
T Consensus 136 e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~-d~~~e~~~~l~~ 198 (199)
T 3qua_A 136 EAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVV-DNVEAALEACAP 198 (199)
T ss_dssp HHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEE-SSHHHHHHHHSC
T ss_pred HHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEe-CCHHHHHHHHhc
Confidence 4555666 542 4789999998788888888764 5667778889998 888988887754
No 10
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=42.26 E-value=44 Score=25.95 Aligned_cols=67 Identities=12% Similarity=0.146 Sum_probs=39.8
Q ss_pred hcchhccceeEEeCChHHHHHH---HHHHHhCCchhhcceeecCCCh--hh----HhhhCCCCCCCccC-CCCCCChHHH
Q psy12585 25 IMPMRFKCGLFINAPPGLETLV---YIVKQFLPDKLQKRVFVSSGDH--TS----LYEHIPRELLPKDY-GGDDISLEEM 94 (146)
Q Consensus 25 ~~P~Rlk~ihiiN~P~~~~~i~---~~vkpfl~~k~~~rI~~~~~~~--e~----L~~~i~~~~LP~ey-GG~~~~~~~l 94 (146)
-|-.| .+|||||.-.....+- +++.... +-..+|-|.|+.. .+ ..+....-++-..| ||++.+....
T Consensus 32 Iyg~R-ngihIIdL~kT~~~L~~A~~~i~~~a--~~gg~iLfVgTk~~a~~~V~~~A~~~g~~yv~~RWlgG~LTN~~ti 108 (256)
T 2vqe_B 32 IYAER-NGIHIIDLQKTMEELERTFRFIEDLA--MRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTI 108 (256)
T ss_dssp EEEEE-TTEEEECHHHHHHHHHHHHHHHHHHH--TTTCCEEEECCSSSSTTTTTTTTTSSSCCEECSCCCTTTTTTHHHH
T ss_pred eeccc-CCeEEEeHHHHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCeeCCCcccCHHHH
Confidence 67788 9999999887665554 3444332 2346788886541 22 22223333333333 9999887754
No 11
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=38.64 E-value=13 Score=29.31 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=24.4
Q ss_pred cceeEEeCChHHHHHHHHHHHhCCchhhc
Q psy12585 31 KCGLFINAPPGLETLVYIVKQFLPDKLQK 59 (146)
Q Consensus 31 k~ihiiN~P~~~~~i~~~vkpfl~~k~~~ 59 (146)
.++.|||+||.+.-...-+.|+|.+.+.+
T Consensus 238 sGm~viNpP~~l~~~~~~~l~~l~~~l~~ 266 (283)
T 2oo3_A 238 CGLWIINPPYTFPSEIKLVLETLTTYFNP 266 (283)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHHHHHSST
T ss_pred eeEEEECCchhHHHHHHHHHHHHHHHhCC
Confidence 57899999999999999888888776543
No 12
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=37.94 E-value=45 Score=24.93 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=41.3
Q ss_pred HHHHHHh-hcchhccceeEEeCChHHHHHHHHH-----HHhCCchhhcceeecCCChhhHhhhCC
Q psy12585 18 ETLVYIK-IMPMRFKCGLFINAPPGLETLVYIV-----KQFLPDKLQKRVFVSSGDHTSLYEHIP 76 (146)
Q Consensus 18 ~~~~~~q-~~P~Rlk~ihiiN~P~~~~~i~~~v-----kpfl~~k~~~rI~~~~~~~e~L~~~i~ 76 (146)
.++.+.| .+ .-|-|.++|..-+.+.+++++ .-|++++.++.+.+. +|.+++.+.+-
T Consensus 128 E~lt~~qlg~--~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~-d~~ee~~~~l~ 189 (215)
T 2a33_A 128 EVITWAQLGI--HDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSA-PTAKELVKKLE 189 (215)
T ss_dssp HHHHHHHTTS--CCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEE-SSHHHHHHHHH
T ss_pred HHHHHHHhCC--CCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEe-CCHHHHHHHHH
Confidence 4455566 53 457799999876667777765 457888899999998 78888877664
No 13
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=30.18 E-value=80 Score=23.57 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHh-hcchhccceeEEeCChHHHHHHHHHH-----HhCCchhhcceeecCCChhhHhhhCC
Q psy12585 18 ETLVYIK-IMPMRFKCGLFINAPPGLETLVYIVK-----QFLPDKLQKRVFVSSGDHTSLYEHIP 76 (146)
Q Consensus 18 ~~~~~~q-~~P~Rlk~ihiiN~P~~~~~i~~~vk-----pfl~~k~~~rI~~~~~~~e~L~~~i~ 76 (146)
.++.+.| .. .-+-|.++|..-+.+-+++++. -|++++.++.+.+. +|.+++.+.+-
T Consensus 124 E~lt~~qlg~--~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~-d~~ee~~~~l~ 185 (216)
T 1ydh_A 124 EMITWSQLGI--HKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSA-PTAKELMEKME 185 (216)
T ss_dssp HHHHHHHHTS--CCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEE-SSHHHHHHHHH
T ss_pred HHHHHHHhcc--cCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEe-CCHHHHHHHHH
Confidence 4445556 53 4577899998777777777654 37788889999998 78888776654
No 14
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=30.14 E-value=46 Score=25.85 Aligned_cols=68 Identities=15% Similarity=0.039 Sum_probs=39.6
Q ss_pred hcchhccceeEEeCChHHHHHHHHHHHhCCchhhcceeecCCCh------hhHhhhCCCCCCCcc-CCCCCCChH
Q psy12585 25 IMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDH------TSLYEHIPRELLPKD-YGGDDISLE 92 (146)
Q Consensus 25 ~~P~Rlk~ihiiN~P~~~~~i~~~vkpfl~~k~~~rI~~~~~~~------e~L~~~i~~~~LP~e-yGG~~~~~~ 92 (146)
-|-.|-.+|||||.-.....+....+-.-.-.-..+|-|.|+.. .+..+....-.+-.. .||++.+..
T Consensus 37 Iy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~ 111 (252)
T 3u5c_A 37 VFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYI 111 (252)
T ss_dssp EEEEETTTEEEECHHHHHHHHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTT
T ss_pred eecccCCCcEEecHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChh
Confidence 57777789999998877666554444433323366788886541 222233333333333 389886543
No 15
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=29.97 E-value=50 Score=25.39 Aligned_cols=65 Identities=9% Similarity=0.039 Sum_probs=39.1
Q ss_pred hcchhccceeEEeCChHHHHHH---HHHHHhCCchhhcceeecCCCh--h----hHhhhCCCCCC-Ccc-CCCCCCChH
Q psy12585 25 IMPMRFKCGLFINAPPGLETLV---YIVKQFLPDKLQKRVFVSSGDH--T----SLYEHIPRELL-PKD-YGGDDISLE 92 (146)
Q Consensus 25 ~~P~Rlk~ihiiN~P~~~~~i~---~~vkpfl~~k~~~rI~~~~~~~--e----~L~~~i~~~~L-P~e-yGG~~~~~~ 92 (146)
-|-.|-.+|||||.-.....+- .++.. + +-..+|-|.|+.. . +..+....-.+ -.. .||++.+..
T Consensus 33 Iy~~R~nGihIIdL~kT~~~L~~A~~~i~~-i--~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~ 108 (241)
T 2xzm_B 33 ISHKGVNGIHYINIEETWQKIKLAARVIAA-V--QHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQ 108 (241)
T ss_dssp EEEECSSSCEEECHHHHHHHHHHHHHHHHH-C--SSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTT
T ss_pred EeeeeCCCcEEEeHHHHHHHHHHHHHHHHH-H--hCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCcc
Confidence 5777778999999987766554 44444 2 2256788886652 2 22233343334 333 399886653
No 16
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=29.01 E-value=65 Score=24.54 Aligned_cols=68 Identities=15% Similarity=0.047 Sum_probs=40.0
Q ss_pred hcchhccceeEEeCChHHHHHHHHHHHhCCc--hhhcceeecCCCh---h---hHhhhCCCCCCCcc-CCCCCCChHHH
Q psy12585 25 IMPMRFKCGLFINAPPGLETLVYIVKQFLPD--KLQKRVFVSSGDH---T---SLYEHIPRELLPKD-YGGDDISLEEM 94 (146)
Q Consensus 25 ~~P~Rlk~ihiiN~P~~~~~i~~~vkpfl~~--k~~~rI~~~~~~~---e---~L~~~i~~~~LP~e-yGG~~~~~~~l 94 (146)
-|-.| .+|||||.-.....+-...+ |+.+ +-..+|-|.|+.. + +..+....-.+-.. .||++.+....
T Consensus 31 Iy~~R-ngihIIdL~kT~~~L~~A~~-~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~g~~yv~~rWlgG~LTN~~ti 107 (231)
T 3bbn_B 31 ISAKC-KGIHIINLTRTARFLSEACD-LVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTT 107 (231)
T ss_dssp EEEEE-TTEEEECHHHHHHHTHHHHH-HSHHHHTTTCCEEEECCCTTTHHHHHHHHHHHTCEECCSSCCSCSSSCHHHH
T ss_pred eeccc-CCcEEeeHHHHHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhCCccccccccCCCCcCHHHH
Confidence 57778 99999998877665543333 3332 2346788887541 2 22233333333333 39999887754
No 17
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=28.47 E-value=49 Score=24.13 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=34.9
Q ss_pred cceeEEeCChHHHHHHHHHHH-----hCCchhhcceeecCCChhhHhhhCC
Q psy12585 31 KCGLFINAPPGLETLVYIVKQ-----FLPDKLQKRVFVSSGDHTSLYEHIP 76 (146)
Q Consensus 31 k~ihiiN~P~~~~~i~~~vkp-----fl~~k~~~rI~~~~~~~e~L~~~i~ 76 (146)
|-|.++|..-+.+-+++++.. |++++..+.+.+. +|.+++.+.+-
T Consensus 128 kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~-~~~~e~~~~l~ 177 (191)
T 1t35_A 128 KPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSS-SRPDELIEQMQ 177 (191)
T ss_dssp CCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEEE-SSHHHHHHHHH
T ss_pred CCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEEe-CCHHHHHHHHH
Confidence 789999987777777766543 7778888889998 78888877663
No 18
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.67 E-value=63 Score=24.15 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=39.3
Q ss_pred Hh-hcchhccceeEEeCChHHHHH---HHHHHHhCCchhhcceeecCCC------hhhHhhhCCCCCCCccC-CCCCCCh
Q psy12585 23 IK-IMPMRFKCGLFINAPPGLETL---VYIVKQFLPDKLQKRVFVSSGD------HTSLYEHIPRELLPKDY-GGDDISL 91 (146)
Q Consensus 23 ~q-~~P~Rlk~ihiiN~P~~~~~i---~~~vkpfl~~k~~~rI~~~~~~------~e~L~~~i~~~~LP~ey-GG~~~~~ 91 (146)
-+ -|-.|-.+|||||.-.....+ ..++.-. ...+|-|.|+. ..+..+....-.+-..| ||++.+.
T Consensus 29 ~~YIy~~r~~Gi~IIdL~kT~~~L~~A~~~i~~~----~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~ 104 (202)
T 3j20_B 29 KKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKF----EPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNP 104 (202)
T ss_dssp GGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHS----CSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCS
T ss_pred cccEeeeeCCCCEEECHHHHHHHHHHHHHHHHhh----CCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccH
Confidence 35 677888899999987765554 3444432 34678888653 12233344444444444 8988654
No 19
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.43 E-value=37 Score=27.15 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=28.1
Q ss_pred Hh-hcchhccceeEEeCChHHHHHHHHHHHhCCchhhcceeecCCC
Q psy12585 23 IK-IMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGD 67 (146)
Q Consensus 23 ~q-~~P~Rlk~ihiiN~P~~~~~i~~~vkpfl~~k~~~rI~~~~~~ 67 (146)
-+ -|-.|-.+|||||.-.....+....+-.-.-+-..+|-|.|+.
T Consensus 39 ~pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i~~~~~ILfVgTk 84 (305)
T 3iz6_A 39 ERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSAR 84 (305)
T ss_dssp TTSCCEEETTTEEECCHHHHHHHHHHHHHHHHHTTSSCCEEEECCS
T ss_pred cccEEeeecCCceEECHHHHHHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 35 6888888999999877665544333322111234578888654
No 20
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Probab=24.19 E-value=29 Score=27.71 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=34.0
Q ss_pred hhcceeecCCChhhHhhhCCCCCCCccCCCCCCChHHHHHHHHHHHHhcHHHhcc
Q psy12585 57 LQKRVFVSSGDHTSLYEHIPRELLPKDYGGDDISLEEMTENWRKELLAHRDWFLD 111 (146)
Q Consensus 57 ~~~rI~~~~~~~e~L~~~i~~~~LP~eyGG~~~~~~~l~~~w~~~l~~~r~~~~~ 111 (146)
+++-+.+. +..+.+.+.+||.--|..||=.+ .+.|.++|++..+-+.+
T Consensus 55 v~~l~~iL-~~l~~~i~e~PP~~~p~RFGN~A------fR~w~~~l~~~~~~ll~ 102 (303)
T 2ixm_A 55 IEKLLALL-NTLDRWIDETPPVDQPSRFGNKA------YRTWYAKLDEEAENLVA 102 (303)
T ss_dssp HHHHHHHH-HHHHHHHHTSCCCCCSCSSSCTH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHhCCCCCCCCCcCChH------HHHHHHHHHHHHHHHHH
Confidence 33334444 55788888999999999998533 47899999877666553
No 21
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=23.31 E-value=48 Score=25.76 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=38.9
Q ss_pred hcchhccceeEEeCChHHHHHHHHHHHhCCchhhcceeecCCCh---h---hHhhhCCCCCCCccC-CCCCCCh
Q psy12585 25 IMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDH---T---SLYEHIPRELLPKDY-GGDDISL 91 (146)
Q Consensus 25 ~~P~Rlk~ihiiN~P~~~~~i~~~vkpfl~~k~~~rI~~~~~~~---e---~L~~~i~~~~LP~ey-GG~~~~~ 91 (146)
-|-.|-.+|||||.-.....+....+.+..-+-..+|-|.|+.. + +..+....-.+-..| ||++.+.
T Consensus 71 Iyg~R~nGIhIIdL~kT~~~L~~A~~~i~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~ 144 (253)
T 3bch_A 71 IYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ 144 (253)
T ss_dssp EEEECTTSCEEECHHHHHHHHHHHHHHHHTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCC
T ss_pred EEeecCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCc
Confidence 57778789999998887665544433333223456788886552 2 222233333333333 8988654
No 22
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=22.46 E-value=62 Score=24.29 Aligned_cols=67 Identities=7% Similarity=0.043 Sum_probs=40.3
Q ss_pred hcchhccceeEEeCChHHHHHHHHHHHhCCchhhcceeecCCCh------hhHhhhCCCCCCCccC-CCCCCChH
Q psy12585 25 IMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDH------TSLYEHIPRELLPKDY-GGDDISLE 92 (146)
Q Consensus 25 ~~P~Rlk~ihiiN~P~~~~~i~~~vkpfl~~k~~~rI~~~~~~~------e~L~~~i~~~~LP~ey-GG~~~~~~ 92 (146)
-|-.|-.+|||||.-.....+-...+-.-.- -..+|-|.|+.. .+..+....-.+-..| ||++.+..
T Consensus 36 Iy~~R~~gihIIdL~kT~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~ 109 (208)
T 1vi6_A 36 IFKVRQDGLYVLDIRKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPM 109 (208)
T ss_dssp EEEECTTSCEEECHHHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTT
T ss_pred EEeeeCCCcEEEcHHHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChh
Confidence 5666778999999887766665444433333 467788886542 2222334433344444 99986654
No 23
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.19 E-value=44 Score=26.59 Aligned_cols=67 Identities=13% Similarity=0.031 Sum_probs=36.0
Q ss_pred hcchhccceeEEeCChHHHHHHHHHHHhCCchhhcceeecCCCh--hh-H---hhhCCCCCCCcc-CCCCCCCh
Q psy12585 25 IMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDH--TS-L---YEHIPRELLPKD-YGGDDISL 91 (146)
Q Consensus 25 ~~P~Rlk~ihiiN~P~~~~~i~~~vkpfl~~k~~~rI~~~~~~~--e~-L---~~~i~~~~LP~e-yGG~~~~~ 91 (146)
-|-.|-.+|||||.-.....+....+-.-.-+-..+|-|.|+.. .. + .+....-.+-.. .||++.+.
T Consensus 38 Iyg~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~ 111 (295)
T 2zkq_b 38 IYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ 111 (295)
T ss_dssp EEEECTTSCEEECHHHHHHHHHHHHHHHHHSSCGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCT
T ss_pred EEeecCCCCEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCc
Confidence 57778789999998877655443333222112346788876542 22 2 223333233333 38888654
Done!