RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12585
(146 letters)
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 58.9 bits (143), Expect = 7e-12
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 26 MPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELLPKDYG 85
P R K IN P + L IVK FL +K +K++ D L ++I +E LP++YG
Sbjct: 96 YPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPEEYG 155
Query: 86 G 86
G
Sbjct: 156 G 156
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 56.9 bits (138), Expect = 4e-11
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 26 MPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRV-FVSSGDHTSLYEHIPRELLPKDY 84
P R L +NAP + ++K FL K ++++ F + + L ++IP E LPK+Y
Sbjct: 90 YPERLGKILIVNAPWIFNVIWKLIKPFLDPKTREKIHFHKNSNLEELLKYIPPEQLPKEY 149
Query: 85 GGD 87
GG
Sbjct: 150 GGT 152
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 55.8 bits (135), Expect = 1e-10
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 27 PMRFKCGLFINAPPGLETLVYIVKQFLPDKL-QKRVFVSSGDHTSLYEHIPRELLPKDYG 85
P R IN P L I+K FL +K +K FV + L E+I +E LP++ G
Sbjct: 95 PERLGKVYIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDKEQLPEELG 154
Query: 86 GDD 88
G
Sbjct: 155 GTL 157
>gnl|CDD|193067 pfam12536, DUF3734, Patatin phospholipase. This domain family is
found in bacteria, and is approximately 110 amino acids
in length. The family is found in association with
pfam01734. There are two completely conserved residues
(F and G) that may be functionally important. The
proteins in this family are frequently annotated as
patatin family phospholipases however there is little
accompanying literature to confirm this.
Length = 108
Score = 32.3 bits (74), Expect = 0.026
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 19/89 (21%)
Query: 42 LETLVYIVKQFLPDKLQKRVFV------SSGDHTSL----YEHIPRELLPKDYGGDDISL 91
L + + + LP++L+ V G ++ Y P E KDY D S
Sbjct: 20 LRHAIRELLERLPEELRNDPDVRELAEYGCGTRVTIVHLIYRAKPYEGHSKDY---DFSR 76
Query: 92 EEMTENWR------KELLAHRDWFLDPTN 114
+ E W + LAH W P
Sbjct: 77 SSIRERWAAGYEDARRALAHPPWLARPDP 105
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain. This family
includes divergent members of the CRAL-TRIO domain
family. This family includes ECM25 that contains a
divergent CRAL-TRIO domain identified by Gallego and
colleagues.
Length = 149
Score = 30.0 bits (68), Expect = 0.29
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 24 KIMPMRFKCGL----FINAPPGLETLV-YIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRE 78
K++P F L ++ L+ + + + F KL K+ + + L E+I
Sbjct: 75 KLLPRAFPKNLKAVYIVHPSTFLKKFLKTLGRLFSSKKLFKKKVIYVSSLSELSEYIDPT 134
Query: 79 LLPKDYGG 86
LP + GG
Sbjct: 135 QLPLELGG 142
>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain)
[Inorganic ion transport and metabolism].
Length = 451
Score = 28.0 bits (63), Expect = 1.9
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 48 IVKQFLPDKLQKRVFVSSGDHT--SLYEHIPRELL-----PKDYGGDDI--SLEEMTENW 98
+V + LP + V D + E + E L D DD L+E+ +
Sbjct: 50 VVWRLLPKEDAAEVLGELDDEVREEIIEALSDEELAAAIEELDI--DDAADLLDELPDEV 107
Query: 99 RKELLAHRDWFLDPTNR 115
R ELL+ LDP R
Sbjct: 108 RDELLSL----LDPEER 120
>gnl|CDD|217909 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107. Nup84p
forms a complex with five proteins, of which Nup120p,
Nup85p, Sec13p, and a Sec13p homologues. This Nup84p
complex in conjunction with Sec13-type proteins is
required for correct nuclear pore biogenesis.
Length = 685
Score = 28.1 bits (63), Expect = 2.1
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 60 RVFVSSGDHTSL---YEHIPRELLPKDYG----GDDISLEEMTENWRKELLAHRD 107
R F+++G +L + P + L K+Y D++ +E + +ELL +R
Sbjct: 493 RRFLANGKVEALRQFFARKPVDTLIKNYSLQGSTDNLPADEEEDLSIRELLQYRA 547
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 27.0 bits (59), Expect = 4.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 117 SDESKRPKGSSFNPKDRFSTQGSFKTLAVD 146
S S +P+G FN K F+ +G L VD
Sbjct: 33 SHCSPQPRGDKFNDKFEFAGEGEKPNLLVD 62
>gnl|CDD|163177 TIGR03183, DNA_S_dndC, putative sulfurtransferase DndC. Members of
this protein family are the DndC protein from the dnd
(degradation during electrophoresis) operon. The dnd
phenotype reflects a sulfur-containing modification to
DNA. This operon is sparsely and sporadically
distributed among bactera; among the first eight
examples are members from the Actinobacteria,
Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is
suggested to be a sulfurtransferase [DNA metabolism,
Restriction/modification].
Length = 447
Score = 26.6 bits (59), Expect = 5.1
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 88 DISLEEMTEN-----WRKELLAHRDWFLDPTNRRS-DESKRPKGS 126
D S+ M +N W K LL R+ N R + +R G
Sbjct: 251 DKSMNAMIQNDSEKEWMKPLLDFRNKLDGIENDRDKRDFRRMNGR 295
>gnl|CDD|235877 PRK06850, PRK06850, hypothetical protein; Provisional.
Length = 507
Score = 26.9 bits (60), Expect = 5.3
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 88 DISLEEMTEN----WRKELLAHRDWFLDPTNRR 116
D S+E M +N W + LL R+ P N R
Sbjct: 270 DKSMEAMIQNGEEKWMQPLLDFRNELAIPENDR 302
>gnl|CDD|221912 pfam13086, AAA_11, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 220
Score = 26.2 bits (58), Expect = 7.6
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 36 INAPPGL---ETLVYIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELLPKDYG 85
I PPG T+V I+KQ L + K+V V + ++++ ++I LL + +G
Sbjct: 22 IQGPPGTGKTTTIVEIIKQLLSNAPGKKVLVCAPSNSAV-DNILERLLEQKFG 73
>gnl|CDD|233890 TIGR02486, RDH, reductive dehalogenase. This model represents a
family of corrin and 8-iron Fe-S cluster-containing
reductive dehalogenases found primarily in halorespiring
microorganisms such as dehalococcoides ethenogenes which
contains as many as 17 enzymes of this type with varying
substrate ranges. One example of a characterized species
is the tetrachloroethene reductive dehalogenase
(1.97.1.8) which also acts on trichloroethene converting
it to dichloroethene.
Length = 314
Score = 26.2 bits (58), Expect = 8.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 84 YGGDDISLEEMTENWRKELLAH 105
G DD+ + E+ +NW +L
Sbjct: 20 LGADDVGIAELDDNWVFKLFYE 41
>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain.
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a
respiratory enzyme located in the intermembrane space of
fungal mitochondria which catalyzes the oxidation of
L-lactate to pyruvate. FCB2 also participates in a short
electron-transport chain involving cytochrome c and
cytochrome oxidase which ultimately directs the reducing
equivalents gained from L-lactate oxidation to oxygen,
yielding one molecule of ATP for every L-lactate
molecule consumed. FCB2 is composed of 2 domains: a
C-terminal flavin-binding domain, which includes the
active site for lacate oxidation, and an N-terminal
b2-cytochrome domain, required for efficient cytochrome
c reduction. FCB2 is a homotetramer and contains two
noncovalently bound cofactors, FMN and heme per subunit.
Length = 344
Score = 26.0 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 38 APPGLETLVYIVKQFLPDKLQK-RVFVSSG 66
AP +E L+ I ++ P+ K V+V G
Sbjct: 251 APAPIEVLLEI-RKHCPEVFDKIEVYVDGG 279
>gnl|CDD|226474 COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 314
Score = 25.9 bits (57), Expect = 9.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 21 VYIKIMPMRFKCGLFINAPPGLETLVYIVKQFL---PDKLQKRV 61
VY M + C +FI P L T+ +++ L P++LQ+ +
Sbjct: 194 VYADPMVLALVCLVFIPLP--LGTVKSALREILLMTPNELQQSI 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.140 0.435
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,642,421
Number of extensions: 696970
Number of successful extensions: 588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 22
Length of query: 146
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 58
Effective length of database: 7,034,450
Effective search space: 407998100
Effective search space used: 407998100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)