RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12585
(146 letters)
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 98.2 bits (245), Expect = 3e-26
Identities = 18/85 (21%), Positives = 44/85 (51%)
Query: 26 MPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELLPKDYG 85
P++ + IN P + ++K FL +K+++R+ + ++ ++LP +YG
Sbjct: 171 FPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYG 230
Query: 86 GDDISLEEMTENWRKELLAHRDWFL 110
G++ S+E++ + W ++ D+
Sbjct: 231 GEEFSMEDICQEWTNFIMKSEDYLS 255
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 80.9 bits (200), Expect = 3e-19
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 26 MPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELLPKDYG 85
P FK FI+ P T +VK FL KL +RVFV D + Y+ I +LP D+G
Sbjct: 230 FPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFG 289
Query: 86 GDDISLEEMTENWRKELLAHRD 107
G + + +
Sbjct: 290 G-TLPKYDGKAVAEQLFGPQAQ 310
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 54.2 bits (130), Expect = 1e-09
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 26 MPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDHTS-LYEHIPRELLPKDY 84
P K + AP ++K FL + +K++ V + L +HI + +P +Y
Sbjct: 182 YPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEY 241
Query: 85 GG 86
GG
Sbjct: 242 GG 243
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 50.2 bits (120), Expect = 3e-08
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 27 PMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDHTS-LYEHIPRELLPKDYG 85
P R I++P G T+ +VK FL ++F+ + L + IP E LP YG
Sbjct: 218 PERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYG 277
Query: 86 GD 87
G
Sbjct: 278 GT 279
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 49.0 bits (117), Expect = 6e-08
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 27 PMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDHTS-LYEHIPRELLPKDYG 85
P R INAP G T + K FL ++F+ + L + IP E LP +G
Sbjct: 203 PERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFG 262
Query: 86 GD 87
G
Sbjct: 263 GK 264
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.015
Identities = 31/129 (24%), Positives = 42/129 (32%), Gaps = 34/129 (26%)
Query: 27 PMRFKCGLFINAPP--GLETLVYIVKQFLPDKLQ--------KRVFVSSGDHTSLY--EH 74
PM L I+ ++ V LP Q + V SG SLY
Sbjct: 337 PM-----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 75 IPRELLPKDYGGDDISLEEMTENWRKELLAHRDWFL-----------DPTNRRSDESKRP 123
R+ K G D S +E RK ++R FL P + ++
Sbjct: 392 TLRKA--KAPSGLDQSRIPFSE--RKLKFSNR--FLPVASPFHSHLLVPASDLINKDLVK 445
Query: 124 KGSSFNPKD 132
SFN KD
Sbjct: 446 NNVSFNAKD 454
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 27.8 bits (62), Expect = 1.5
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 79 LLPKDYGGDDISLEEMTENWRKELLAHRD 107
L P+ YGG ++ E E +A D
Sbjct: 66 LQPRLYGGYEVHPREFAETVMG--VAALD 92
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 27.1 bits (60), Expect = 2.5
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 74 HIPRELLPKDYGGDDISLEEMTE 96
I K SL+EMT+
Sbjct: 228 GIAYSNKKKSGERTQPSLKEMTQ 250
>1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme,
amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP:
c.1.8.1
Length = 524
Score = 27.1 bits (60), Expect = 2.5
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 101 ELLAHRDWFLDPTNRRSDESKRPKGSSFNPKDRFSTQG 138
++ A++ F + P S P D FS G
Sbjct: 252 DVWANKKQF------LLNRKGFPLIVSGVPPDAFSETG 283
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer,
lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB:
2fah_A* 2qzy_A*
Length = 608
Score = 26.7 bits (58), Expect = 4.1
Identities = 4/31 (12%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 85 GGDDISLEEMT----ENWRKELLAHRDWFLD 111
G + ++ W +E R+++ +
Sbjct: 554 GLPGVDYSQLFPMEKGFWEEECRQLREYYGE 584
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel,
structural genomics, protein structure initiati 2; 2.81A
{Galdieria sulphuraria}
Length = 258
Score = 26.1 bits (58), Expect = 4.4
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 16/89 (17%)
Query: 31 KCGLFINAPPGLE-TLVYIVKQFLPDKLQKRVFVSSGDHTSLYE------HIPRELLPKD 83
K + G L+ +V+++ +Q+RV S H +L + L
Sbjct: 116 KGEEWKRKESGDHQRLLLLVEKY---HMQERVDYCSFHHEALAHLKALCPDVKITYLFNY 172
Query: 84 YGGDDISLEEMTENWRKELLAHRDWFLDP 112
G ++ ++ +
Sbjct: 173 MGQPTP------LDFVEQACYGDANGVSM 195
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 26.2 bits (58), Expect = 4.4
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 61 VFVSSGDHTSLYEHIPRELLPKDY 84
V +S+ + I R+ +DY
Sbjct: 234 VAISNVGVRETVKLIGRDYFDRDY 257
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble
protein, KD, protein engineering, immunotherapy,
immune-suppressor, immune system; 2.10A {Homo sapiens}
PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Length = 114
Score = 25.3 bits (56), Expect = 5.2
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 118 DESKRPKGSSFNPKDRFSTQGS 139
+PK + RFS G
Sbjct: 52 LNQNKPKAAEGLDTQRFS--GK 71
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein
structure initia YORK SGX research center for structural
genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP:
a.80.1.2 PDB: 2qw6_A
Length = 204
Score = 25.6 bits (57), Expect = 5.3
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 16/60 (26%)
Query: 47 YIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELLPKDYGGDDISLEEMTENWRKELLAHR 106
++ +Q+LPDKL+ + Y+ PKD G + +L + ++ H
Sbjct: 157 WVNQQYLPDKLKNAQY---------YQ-------PKDTGKYEQALGQQYYRIKEWKEGHH 200
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain,
unknown function; 1.94A {Helicobacter pylori}
Length = 514
Score = 26.1 bits (57), Expect = 5.8
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 17 LETLVYIKIMPMRFKCGLFINAPPGLETL 45
L+ L +K + L IN E
Sbjct: 56 LDLLKQLKGVSYSENIALKINQIAVFEDA 84
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate;
GTP-dependent, signaling protein, lyase; 2.30A
{Corynebacterium glutamicum}
Length = 610
Score = 25.9 bits (56), Expect = 7.5
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 83 DYGGDDISLEEM-------TENWRKELLAHRDWF 109
D G D +E++ E W ++ + ++
Sbjct: 550 DLDGLDTPIEDVKEALTAPAEQWANDVEDNAEYL 583
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1,
glycerophosphoryl diester phosphodiesterase, ST
genomics; HET: MSE CIT GOL; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 272
Score = 25.4 bits (56), Expect = 7.8
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 40 PGLETLVYIVKQFLPD-KLQKRVFVSSGDHTSLYE------HIPRELLPKDYGGDDISLE 92
P + +V + + R + S D +L I L + G LE
Sbjct: 149 PNIALFCDLVVAEIKKAHITDRFTLQSFDVRALEYMHSQYPDIKLSYLVETKGTLKKQLE 208
Query: 93 EM 94
++
Sbjct: 209 KL 210
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.435
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,292,238
Number of extensions: 129550
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 30
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)