RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12585
         (146 letters)



>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score = 77.0 bits (189), Expect = 4e-19
 Identities = 18/86 (20%), Positives = 44/86 (51%)

Query: 26  MPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELLPKDYG 85
            P++ +    IN P     +  ++K FL +K+++R+ +   ++         ++LP +YG
Sbjct: 97  FPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYG 156

Query: 86  GDDISLEEMTENWRKELLAHRDWFLD 111
           G++ S+E++ + W   ++   D+   
Sbjct: 157 GEEFSMEDICQEWTNFIMKSEDYLSS 182


>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
           middle domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 55.8 bits (134), Expect = 4e-11
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 24  KIMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRV-FVSSGDHTSLYEHIPRELLPK 82
           +  P   K    + AP        ++K FL +  +K++  + +     L +HI  + +P 
Sbjct: 105 ENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPV 164

Query: 83  DYGG 86
           +YGG
Sbjct: 165 EYGG 168


>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
           phosphatidylinositol transfer protein sec14p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 203

 Score = 50.5 bits (120), Expect = 4e-09
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 26  MPMRFKCGLFINAPPGLETLVYIVKQFLPDKL-QKRVFVSSGDHTSLYEHIPRELLPKDY 84
            P R      INAP G  T   + K FL      K   + S     L + IP E LP  +
Sbjct: 109 YPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKF 168

Query: 85  GGDD 88
           GG  
Sbjct: 169 GGKS 172


>d1svba2 f.10.1.1 (A:1-302) Envelope glycoprotein {Tick-borne
           encephalitis virus [TaxId: 11084]}
          Length = 302

 Score = 26.7 bits (59), Expect = 1.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 89  ISLEEMTENWRKELLAHRDWFLD 111
           + L++  E+       HRDWF D
Sbjct: 200 LELDKTVEHLPTAWQVHRDWFND 222


>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
           carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 363

 Score = 25.6 bits (56), Expect = 3.1
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)

Query: 85  GGDDISLEEMT----ENWRKELLAHRDWFLD 111
           G   I++ E+     E W KE+     + +D
Sbjct: 309 GLGHINMMELFSISKEFWDKEVEDIEKYLVD 339


>d1kv7a2 b.6.1.3 (A:171-335) multi-copper oxidase CueO
          {Escherichia coli [TaxId: 562]}
          Length = 165

 Score = 25.0 bits (54), Expect = 3.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 79 LLPKDYGGDDISL 91
          +LPK +G DD+ +
Sbjct: 1  MLPKQWGIDDVPV 13


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
           virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 25.0 bits (55), Expect = 3.5
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 7/31 (22%)

Query: 79  LLPKDYGGDDISLE-------EMTENWRKEL 102
           LL +D G  +   E       +M +NWR EL
Sbjct: 278 LLTRDGGNSNNESEIFRPGGGDMRDNWRSEL 308


>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 291

 Score = 24.9 bits (54), Expect = 3.9
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 21  VYIKIMPMRFKCGLFINAPPGLETLVYIVKQFLPDKLQKRVFVSSGDHTSLYEHIPRELL 80
           V++K+MP   K  + I  P  +E ++  + +    KLQ    ++  D T        +  
Sbjct: 2   VHLKMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQ---IITDFDMTLSRFSYNGKRC 58

Query: 81  PKDYGGDDISLEEMTENWRKELLAHRD 107
           P  +   D   + +T+  R++LL  ++
Sbjct: 59  PTCHNIIDNC-KLVTDECRRKLLQLKE 84


>d1ok8a2 f.10.1.1 (A:1-297) Envelope glycoprotein {Dengue virus type
           2 [TaxId: 11060]}
          Length = 297

 Score = 24.7 bits (54), Expect = 5.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 100 KELLAHRDWFLD 111
           K  L HR WFLD
Sbjct: 204 KAWLVHRQWFLD 215


>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
           {Methylobacillus flagellatus [TaxId: 405]}
          Length = 395

 Score = 24.6 bits (53), Expect = 6.5
 Identities = 9/62 (14%), Positives = 20/62 (32%)

Query: 73  EHIPRELLPKDYGGDDISLEEMTENWRKELLAHRDWFLDPTNRRSDESKRPKGSSFNPKD 132
            +IP          DD S++ +       L    +++ +     S    R     F+  +
Sbjct: 155 RNIPAFQTLAQRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSE 214

Query: 133 RF 134
           + 
Sbjct: 215 KM 216


>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 343

 Score = 24.1 bits (52), Expect = 9.6
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 92  EEMTENWRKELLAHRDWFLDPTNRRSDESKRPKGS-SFNPKDRFSTQGSF 140
            E+   W K      DW   P  R+     RP+ S +     +  + G F
Sbjct: 175 AELEPKWPKA--FWDDWMRRPEQRKGRACVRPEISRTMTFGRKGVSHGQF 222


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 573,662
Number of extensions: 25805
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 12
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)