BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12586
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ5|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
pdb|4AQ9|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 461
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 8/123 (6%)
Query: 98 PYPDITYYISLRRRPMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVF 157
PY DITY+ ++R P+++V VFY+P++SGEK+TL IS LLS+TVF
Sbjct: 221 PYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVF 280
Query: 158 LMTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQV 213
L+ I E +P T + I +Y+L + F + IIV ++ T +R + T+P+ V
Sbjct: 281 LLVIVELIPSTSSAVPLIGKYMLFTMI-FVISSIIVTVVVINTHHRSPSTH---TMPQWV 336
Query: 214 RPL 216
R +
Sbjct: 337 RKI 339
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution.
pdb|2BG9|D Chain D, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 98 PYPDITYYISLRRRPMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVF 157
PY DITY+ ++R P+++V VFY+P++SGEK+TL IS LLS+TVF
Sbjct: 197 PYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVF 256
Query: 158 LMTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYR 199
L+ I E +P T + I +Y+L + F + IIV ++ T +R
Sbjct: 257 LLVIVELIPSTSSAVPLIGKYMLFTMI-FVISSIIVTVVVINTHHR 301
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 522
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 99 YPDITYYISLRRRPMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVFL 158
Y D+T+Y+ +RR+P+FYV FY+P+ESGEK++ I LL+ VFL
Sbjct: 233 YQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFL 292
Query: 159 MTIRETLPPT 168
+ + LP T
Sbjct: 293 LLTSQRLPET 302
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 369
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 99 YPDITYYISLRRRPMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVFL 158
Y D+T+Y+ +RR+P+FYV FY+P+ESGEK++ I LL+ VFL
Sbjct: 197 YQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFL 256
Query: 159 MTIRETLPPT 168
+ + LP T
Sbjct: 257 LLTSQRLPET 266
>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron
Images
pdb|1OED|D Chain D, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 227
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 112 PMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTEN- 170
P+++V VFY+P++SGEK+TL IS LLS+TVFL+ I E +P T +
Sbjct: 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSA 60
Query: 171 ---ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPL 216
I +Y+L + F + II+ ++ T +R + T+P+ VR +
Sbjct: 61 VPLIGKYMLFTMI-FVISSIIITVVVINTHHRSPSTH---TMPQWVRKI 105
>pdb|3A5C|G Chain G, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|O Chain O, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|G Chain G, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|O Chain O, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|G Chain G, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 223
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 43/61 (70%)
Query: 216 LASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQD 275
+A+ ET K + + I++T +RVNALE VVIP + + +I+ L++ ERE+ +RLK+I+
Sbjct: 140 VANTETRLKKIGEEIKKTTRRVNALEQVVIPGIRAQIRFIQQVLEQREREDTFRLKRIKG 199
Query: 276 K 276
K
Sbjct: 200 K 200
>pdb|3VR6|G Chain G, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 217
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 216 LASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQD 275
LA +E + + + + I +T +RVNALEY+ IP+L T+ YIK +L+E ER E RL K+++
Sbjct: 153 LAEVEKTCQLMAEEIEKTRRRVNALEYMTIPQLEETIYYIKMKLEENERAEVTRLIKVKN 212
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 99 YPDITYYISLRRRPMFYVFXXXXXXXXXXXXXXXVFYVPSESG-EKVTLGISALLSMTVF 157
+ +I +++ ++R+P+FY+ V+++P+++G +K TL IS LL+ T+F
Sbjct: 198 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIF 257
Query: 158 LMTIRETLPPT 168
L I + +P T
Sbjct: 258 LFLIAQKVPET 268
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 99 YPDITYYISLRRRPMFYVFXXXXXXXXXXXXXXXVFYVPSESG-EKVTLGISALLSMTVF 157
+ +I +++ ++R+P+FY+ V+++P+++G +K TL IS LL+ T+F
Sbjct: 205 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIF 264
Query: 158 LMTIRETLPPT 168
L I + +P T
Sbjct: 265 LFLIAQKVPET 275
>pdb|3AON|A Chain A, Crystal Structure Of The Central Axis (Ntpd-Ntpg) In The
Catalytic Portion Of Enterococcus Hirae V-Type Sodium
Atpase
pdb|3VR4|G Chain G, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|G Chain G, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 217
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 216 LASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQD 275
LA +E + + + I +T +RVNALEY IP+L T+ YIK +L+E ER E RL K+++
Sbjct: 153 LAEVEKTCQLXAEEIEKTRRRVNALEYXTIPQLEETIYYIKXKLEENERAEVTRLIKVKN 212
Query: 276 KKRE 279
E
Sbjct: 213 XGTE 216
>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 250
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 112 PMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTE 169
P+FY+ VFY+P ++GEK++L ISALL++TVFL+ + + +P T
Sbjct: 1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETS 58
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 99 YPDITYYISLRRRPMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGIS 149
Y D+T+Y+ ++R+P+FY+ VFY+P ++GEK++L IS
Sbjct: 228 YEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSIS 278
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 99 YPDITYYISLRRRPMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGIS 149
Y D+T+Y+ ++R+P+FY+ VFY+P ++GEK++L IS
Sbjct: 195 YEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSIS 245
>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 112 PMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPT 168
P+FYV FY+P+ESGEK++ IS LL+ VFL+ + LP T
Sbjct: 1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPET 57
>pdb|1DXZ|A Chain A, M2 Transmembrane Segment Of Alpha-Subunit Of Nicotinic
Acetylcholine Receptor From Torpedo Californica, Nmr, 20
Structures
Length = 33
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 137 PSESGEKVTLGISALLSMTVFLMTIRETLPPT 168
P++SGEK+TL IS LLS+TVFL+ I E +P T
Sbjct: 1 PTDSGEKMTLSISVLLSLTVFLLVIVELIPST 32
>pdb|2KSR|A Chain A, Nmr Structures Of Tm Domain Of The N-Acetylcholine
Receptor B2 Subunit
Length = 164
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 109 RRRPMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPT 168
RR+P+FY VFY+PS+ GEK+TL IS LL++TVFL+ I + +PPT
Sbjct: 25 RRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPT 84
Query: 169 E 169
Sbjct: 85 S 85
>pdb|2LLY|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Nachr
A4 Subunit
Length = 137
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 112 PMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENI 171
P+FY VFY+PSE GEK+TL IS LLS+TVFL+ I E +P T ++
Sbjct: 7 PLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPSTSSV 66
Query: 172 S----EYVL 176
S EY+L
Sbjct: 67 SPSIGEYLL 75
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 112 PMFYVFXXXXXXXXXXXXXXXVFYVPSESG-EKVTLGISALLSMTVFLMTIRETLPPTE 169
P+FY+ V+++P+++G +K TL IS LL+ T+FL I + +P T
Sbjct: 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETS 59
>pdb|2LM2|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Achr B2
Subunit
Length = 137
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 112 PMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTE-- 169
P+FY VFY+PS+ GEK+TL IS LL++TVFL+ I + +PPT
Sbjct: 7 PLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPTSSD 66
Query: 170 --NISEYVL 176
++ EY++
Sbjct: 67 SPSVGEYLM 75
>pdb|2LKG|A Chain A, Wsa Major Conformation
pdb|2LKH|A Chain A, Wsa Minor Conformation
Length = 140
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 112 PMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTEN- 170
P+++V VFY+P++SGEK+T S L S+T L I E +P T +
Sbjct: 49 PLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTESKSVLKSLTEKLKKIVELIPSTSSA 108
Query: 171 ---ISEYVLVSSDHFRVKYIIVADELLPTRYR 199
I +Y+L + + F I + +E++ T +R
Sbjct: 109 VPLIGKYMLFTKE-FVESSIKITEEVINTHHR 139
>pdb|2K58|B Chain B, Nmr Structures Of The First Transmembrane Domain Of The
Neuronal Acetylcholine Receptor Beta 2 Subunit
Length = 35
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 109 RRRPMFYVFXXXXXXXXXXXXXXXVFYVPSESGEK 143
RR+P+FY VFY+PS+ GEK
Sbjct: 1 RRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEK 35
>pdb|3SQ6|A Chain A, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|B Chain B, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|C Chain C, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|D Chain D, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|E Chain E, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|F Chain F, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|G Chain G, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|H Chain H, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|I Chain I, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|J Chain J, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ9|A Chain A, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|B Chain B, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|C Chain C, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|D Chain D, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|E Chain E, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|F Chain F, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|G Chain G, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|H Chain H, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|I Chain I, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|J Chain J, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
Length = 204
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 63 EREEGDTTNYQVNGEFDLLXXXXXXXXXXXXXXXEPYPDITYYISLRRR 111
+ +E D + Y F+L+ EPYPD+T+ ++ R++
Sbjct: 155 QMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKK 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,961,146
Number of Sequences: 62578
Number of extensions: 235508
Number of successful extensions: 593
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 26
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)