Query psy12586
Match_columns 309
No_of_seqs 271 out of 1549
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 23:06:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3646|consensus 100.0 2.1E-42 4.5E-47 319.9 9.0 196 1-214 134-337 (486)
2 KOG3643|consensus 100.0 3.5E-40 7.7E-45 304.0 14.8 184 2-201 144-333 (459)
3 TIGR00860 LIC Cation transport 100.0 1.1E-39 2.5E-44 316.0 17.6 191 2-205 140-336 (459)
4 KOG3645|consensus 100.0 1.7E-37 3.6E-42 300.0 20.6 200 2-218 138-347 (449)
5 KOG3644|consensus 100.0 2E-35 4.3E-40 282.3 9.9 182 2-200 154-341 (457)
6 KOG3642|consensus 100.0 1.9E-34 4.1E-39 267.6 6.9 185 1-201 151-341 (466)
7 KOG1647|consensus 99.8 1.3E-20 2.8E-25 159.0 5.2 81 207-287 139-219 (255)
8 COG1394 NtpD Archaeal/vacuolar 99.8 1.2E-19 2.6E-24 156.0 3.5 76 207-282 134-209 (211)
9 TIGR00309 V_ATPase_subD H(+)-t 99.8 1.6E-19 3.5E-24 157.7 2.6 73 207-279 136-208 (209)
10 PRK02195 V-type ATP synthase s 99.7 5.9E-19 1.3E-23 152.7 3.6 73 207-279 126-198 (201)
11 PF01813 ATP-synt_D: ATP synth 99.7 6.4E-19 1.4E-23 152.7 1.7 70 207-276 127-196 (196)
12 PRK00373 V-type ATP synthase s 99.7 7.7E-19 1.7E-23 152.9 1.3 69 207-275 136-204 (204)
13 PF02932 Neur_chan_memb: Neuro 99.7 8.6E-20 1.9E-24 157.2 -5.6 96 119-217 1-100 (237)
14 PF02931 Neur_chan_LBD: Neurot 99.7 3.3E-16 7.1E-21 137.5 12.3 105 2-112 110-217 (217)
15 PF14494 DUF4436: Domain of un 93.9 0.079 1.7E-06 47.7 4.4 70 100-170 152-225 (256)
16 PF04156 IncA: IncA protein; 81.9 8.4 0.00018 32.8 8.0 30 214-243 81-110 (191)
17 PF06667 PspB: Phage shock pro 76.1 1.8 3.9E-05 31.4 1.7 25 220-244 41-65 (75)
18 PRK00247 putative inner membra 73.5 46 0.00099 32.4 11.0 38 244-281 321-358 (429)
19 PRK09458 pspB phage shock prot 65.8 6.5 0.00014 28.4 2.6 26 219-244 40-65 (75)
20 PF06936 Selenoprotein_S: Sele 63.3 33 0.00072 29.5 7.0 55 238-295 71-125 (190)
21 TIGR02976 phageshock_pspB phag 58.1 7.2 0.00016 28.3 1.7 25 220-244 41-65 (75)
22 PF08858 IDEAL: IDEAL domain; 52.9 21 0.00046 22.0 3.0 21 251-271 14-34 (37)
23 KOG3878|consensus 49.5 64 0.0014 30.1 6.8 96 200-296 71-169 (469)
24 PRK06231 F0F1 ATP synthase sub 47.4 1.3E+02 0.0028 26.1 8.2 21 150-170 17-37 (205)
25 PF14809 TGT_C1: C1 domain of 47.3 14 0.00031 25.4 1.7 16 292-307 31-46 (70)
26 PF15437 PGBA_C: Plasminogen-b 46.2 79 0.0017 23.2 5.5 38 264-301 37-79 (86)
27 PRK12585 putative monovalent c 42.5 71 0.0015 27.5 5.6 15 187-201 82-96 (197)
28 KOG3612|consensus 40.6 1.5E+02 0.0033 29.6 8.2 78 222-299 461-540 (588)
29 KOG1532|consensus 40.6 75 0.0016 29.3 5.7 52 247-298 251-302 (366)
30 COG4710 Predicted DNA-binding 40.6 25 0.00054 25.1 2.1 8 255-262 39-46 (80)
31 PF10252 PP28: Casein kinase s 38.1 60 0.0013 23.9 3.9 28 261-288 52-79 (82)
32 PRK01919 tatB sec-independent 37.6 1.1E+02 0.0025 25.7 6.0 13 207-219 23-35 (169)
33 PF01093 Clusterin: Clusterin; 37.4 1.5E+02 0.0032 29.0 7.6 45 252-298 25-72 (436)
34 PLN03086 PRLI-interacting fact 36.4 47 0.001 33.5 4.2 28 261-288 16-43 (567)
35 PF11368 DUF3169: Protein of u 36.4 82 0.0018 28.0 5.5 39 231-270 153-191 (248)
36 PF13974 YebO: YebO-like prote 32.9 17 0.00036 26.7 0.3 50 221-270 26-76 (80)
37 PF15363 DUF4596: Domain of un 32.3 65 0.0014 20.7 2.8 10 74-83 33-42 (46)
38 PF09903 DUF2130: Uncharacteri 31.0 1.2E+02 0.0026 27.5 5.6 26 270-295 22-47 (267)
39 KOG0163|consensus 29.4 3.3E+02 0.0072 28.7 8.7 20 231-250 906-925 (1259)
40 COG2846 Regulator of cell morp 27.5 3.3E+02 0.0072 23.7 7.2 53 248-300 73-138 (221)
41 PF15145 DUF4577: Domain of un 26.2 1.8E+02 0.0038 22.8 4.9 24 171-194 60-83 (128)
42 smart00030 CLb CLUSTERIN Beta 25.8 4.4E+02 0.0095 22.9 7.7 36 261-298 42-78 (206)
43 KOG1029|consensus 25.6 2.4E+02 0.0052 29.7 7.0 19 254-272 342-360 (1118)
44 KOG4196|consensus 25.5 3.6E+02 0.0078 21.7 6.8 24 251-274 33-56 (135)
45 PF08349 DUF1722: Protein of u 25.2 38 0.00083 26.5 1.2 32 232-271 47-78 (117)
46 PRK00888 ftsB cell division pr 24.4 97 0.0021 23.8 3.3 11 257-267 65-75 (105)
47 smart00502 BBC B-Box C-termina 23.5 3.3E+02 0.0071 20.5 8.2 57 220-280 20-76 (127)
48 KOG4552|consensus 22.4 1.7E+02 0.0038 25.5 4.7 51 253-307 61-111 (272)
49 PRK13454 F0F1 ATP synthase sub 22.0 4.8E+02 0.01 21.9 9.1 17 222-238 66-82 (181)
50 PF11300 DUF3102: Protein of u 21.5 1.1E+02 0.0025 24.5 3.2 40 242-281 84-123 (130)
51 PF12434 Malate_DH: Malate deh 21.5 96 0.0021 17.8 2.0 18 276-293 9-26 (28)
52 PF08496 Peptidase_S49_N: Pept 20.6 1.4E+02 0.003 24.8 3.7 28 172-200 8-35 (155)
No 1
>KOG3646|consensus
Probab=100.00 E-value=2.1e-42 Score=319.95 Aligned_cols=196 Identities=32% Similarity=0.523 Sum_probs=182.0
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCC--CCccceeecC
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREE--GDTTNYQVNG 76 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~--~~~~~~~~~~ 76 (309)
+|||.|.|.+|... ++|.+|.+.||||. .|.++|||| +| +|..+||+...+. +|++.|..||
T Consensus 134 ~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSW----TY----------~G~~lDL~~~~~~g~~Dls~yi~NG 199 (486)
T KOG3646|consen 134 YSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSW----TY----------AGILLDLRIDDEDGGIDLSTYIPNG 199 (486)
T ss_pred ccCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeE----EE----------cceeeeeeeccccCCcchhhcccCC
Confidence 58999999999999 99999999999999 999999999 54 6777777654443 6799999999
Q ss_pred eEEEeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHH
Q psy12586 77 EFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTV 156 (309)
Q Consensus 77 eW~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~ 156 (309)
||++.+.++.+....|+||+++|++++|++.+||+..||.+|+++||.++.++++.||.+|+|+|||+++++|++|+.++
T Consensus 200 EW~Ll~~pakr~~~~y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~gEKitL~iTilLsvc~ 279 (486)
T KOG3646|consen 200 EWDLLGTPAKREEKTYDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDAGEKITLQITILLSVCF 279 (486)
T ss_pred ceeeccccccceeeecccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccccceeeeeeehHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcc----ccchhhhhhhHHHHHHHHHhhcccceeeeCCccccccccccccc
Q psy12586 157 FLMTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVR 214 (309)
Q Consensus 157 ~l~~l~~~lP~~s~----i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~~~~~~l~~~l~ 214 (309)
|+..+++..|++|. +|.||..||+++.+| +..|++|+|+|+|++.. +.+.+|.+
T Consensus 280 FL~mvse~~PpTSeaVPllg~fFsc~m~iv~~S-vvfTv~vLn~h~R~p~~---h~m~p~~r 337 (486)
T KOG3646|consen 280 FLTMVSEMTPPTSEAVPLLGAFFSCCMFIVAAS-VVFTVIVLNLHHRTPET---HEMSPWTR 337 (486)
T ss_pred HHHHHHhhcCCccccccHHHHHHHHHHHHHHhh-heeEEEEEeeeccCccc---cccCHHHH
Confidence 99999999999999 999999999999998 89999999999998876 44444444
No 2
>KOG3643|consensus
Probab=100.00 E-value=3.5e-40 Score=303.95 Aligned_cols=184 Identities=18% Similarity=0.314 Sum_probs=166.6
Q ss_pred CCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeEE
Q psy12586 2 NTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFD 79 (309)
Q Consensus 2 ~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW~ 79 (309)
.||+|+|+.|++. +.|+|||++||+|+ +|.|.++|| +|+.+|+.|.|..|.. .+...+-..-+++.
T Consensus 144 ~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESY----GYt~~DI~y~W~~g~~--------av~~~e~i~LpqFt 211 (459)
T KOG3643|consen 144 PDGTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESY----GYTTDDIEYYWSKGDN--------AVKGDEKIELPQFT 211 (459)
T ss_pred CCCeEEEEEEEEEEEecccccccCCCcccceeEEEEec----ccccccEEEEEcCCCc--------cccceeeeeccceE
Confidence 6999999999999 99999999999999 999999999 9999999999997642 22223334456777
Q ss_pred EeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCC-CceEEEEehhHHHHHHHH
Q psy12586 80 LLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSES-GEKVTLGISALLSMTVFL 158 (309)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~-~~Ri~l~it~lLt~~~~l 158 (309)
+.+.........+. +|+|+.+...|.++|+.+||++++|+|+++++++||++||+..++ ++|+++|+|++||||++.
T Consensus 212 i~~~~~~s~~~~~s--TG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVLTMTTl~ 289 (459)
T KOG3643|consen 212 ITEYHVTSRLVSFS--TGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVLTMTTLM 289 (459)
T ss_pred EEEEEEEEEEEEEc--cccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHHhHHHHH
Confidence 88888777777776 899999999999999999999999999999999999999999997 999999999999999999
Q ss_pred HHHhhcCCCCcc---ccchhhhhhhHHHHHHHHHhhcccceeeeCC
Q psy12586 159 MTIRETLPPTEN---ISEYVLVSSDHFRVKYIIVADELLPTRYRGR 201 (309)
Q Consensus 159 ~~l~~~lP~~s~---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~ 201 (309)
...++.||++|| ||+|+++|++|||+| +++++.+|+.+.+.
T Consensus 290 t~~n~slPrvSYVKAiDiYL~vCFvfVF~s--LLEYA~V~Y~~~~~ 333 (459)
T KOG3643|consen 290 TSTNESLPRVSYVKAIDVYLGVCFVFVFLS--LLEYAAVNYMFKRR 333 (459)
T ss_pred hhhhccCCCccceeeehhhhhHHHHHHHHH--HHHHHHHHHHHHhH
Confidence 999999999999 999999999999996 78899999887653
No 3
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=100.00 E-value=1.1e-39 Score=316.01 Aligned_cols=191 Identities=27% Similarity=0.410 Sum_probs=171.5
Q ss_pred CCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeEE
Q psy12586 2 NTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFD 79 (309)
Q Consensus 2 ~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW~ 79 (309)
+||+|.|.+|..+ ++|+||+++||||+ +|+|+|||| +|..+++.+.+.++..+ ..+.+.|..++||+
T Consensus 140 ~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fgSw----~y~~~~i~l~~~~~~~v-------~~~~~~~~~~~eW~ 208 (459)
T TIGR00860 140 PNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESW----GYTTNDIKLEWKEQGAV-------QVDDSLFISLPEFE 208 (459)
T ss_pred CCCcEEEecCceEEecccceeccCCCCCccccEEEhhh----ccccceEEEEECCCCce-------EechhhccccCceE
Confidence 5999999999999 99999999999999 999999999 88777777766433211 23455677899999
Q ss_pred EeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCC-CCceEEEEehhHHHHHHHH
Q psy12586 80 LLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSE-SGEKVTLGISALLSMTVFL 158 (309)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~-~~~Ri~l~it~lLt~~~~l 158 (309)
+.+....+.. .+.||+++|+++.+++.++|+++||++++++||+++++++|++||+|++ +|+|+++|+|++|++++|+
T Consensus 209 l~~~~~~~~~-~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~ 287 (459)
T TIGR00860 209 LLGVYGTRYC-TSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFS 287 (459)
T ss_pred EEeeeeeeeE-ecccCCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHH
Confidence 9997666655 6788999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHhhcCCCCcc---ccchhhhhhhHHHHHHHHHhhcccceeeeCCcccc
Q psy12586 159 MTIRETLPPTEN---ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQ 205 (309)
Q Consensus 159 ~~l~~~lP~~s~---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~~~ 205 (309)
..+++.+|++|+ ||+|+++||++++++ ++.+++|+|+++|++....
T Consensus 288 ~~v~~~lP~~S~vpli~~y~~~~~~~v~~s-li~tv~V~~~~~~~~~~~~ 336 (459)
T TIGR00860 288 SGVRESLPAVSYVKAIDVYFAVCMAFVFLA-LLETAFVNYVHHKDPAQGK 336 (459)
T ss_pred HHHHhhCCCcchHHHHHHHHHHHHHHHHHH-HHHHHhheeEEccCCCCCc
Confidence 999999999999 999999999999998 8999999999999876543
No 4
>KOG3645|consensus
Probab=100.00 E-value=1.7e-37 Score=300.00 Aligned_cols=200 Identities=34% Similarity=0.627 Sum_probs=180.1
Q ss_pred CCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeE-EEecCCC--CCccceeecC
Q psy12586 2 NTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLD-LLKEREE--GDTTNYQVNG 76 (309)
Q Consensus 2 ~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~-l~~~~~~--~~~~~~~~~~ 76 (309)
+||+|.|.+|+.+ ++|++|+++||||. +|.++|||| +|.. .+++ +...... .+++++.+|+
T Consensus 138 ~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~sw----~~~~----------~~i~~~~~~~~~~~~~~~~~~~n~ 203 (449)
T KOG3645|consen 138 YTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFGSW----TYDG----------SEVDGLDLNAQTIEVDLSDFIENS 203 (449)
T ss_pred ECCEEEEEcceEEEeecccccccCCCcceeEeEEEecc----ccCc----------cccceeeeccccccCCHHHcCCCC
Confidence 6999999999999 99999999999999 999999999 6544 4333 3333344 7889999999
Q ss_pred eEEEeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCC-ceEEEEehhHHHHH
Q psy12586 77 EFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESG-EKVTLGISALLSMT 155 (309)
Q Consensus 77 eW~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~-~Ri~l~it~lLt~~ 155 (309)
||++.+.+.......|.||++.|+.+.|.+.+||+|.||++++++||+++++++.++||+|++++ +|+++|+|++|+++
T Consensus 204 eW~l~~~~~~~~~~~~~~~~~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~t 283 (449)
T KOG3645|consen 204 EWELLSVTVVREEKKYDCCPGPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMT 283 (449)
T ss_pred cEEEEeeeeEEeecccCCCCCceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHH
Confidence 99999999999888888888999999999999999999999999999999999999999998875 99999999999999
Q ss_pred HHHHHHhhcCCCCcc----ccchhhhhhhHHHHHHHHHhhcccceeeeCCccccccccccccccccc
Q psy12586 156 VFLMTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLAS 218 (309)
Q Consensus 156 ~~l~~l~~~lP~~s~----i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~~~~~~l~~~l~~la~ 218 (309)
+++..+++.+|++|. |+.|++++|++++++ ++++++++|+++|++... .++|.|+..+..
T Consensus 284 v~ll~vs~~~P~ts~~iPLig~y~~~~m~~~~~s-v~~tv~i~~~~~~~~~~~--~~~~~~~~~~~~ 347 (449)
T KOG3645|consen 284 VFLLLVSDKMPPTSSVIPLIGKYLLFTMVLVTIS-VVVTVVILNLHHRSPTTH--PPMPPWVRRVFL 347 (449)
T ss_pred HHHHHHHhhcCCccCcchHHHHHHHHHHHHHHHH-HHHheeEEeeecccCCCC--CCCchHHHHHHH
Confidence 999999999999999 999999999999998 899999999999987652 378888776543
No 5
>KOG3644|consensus
Probab=100.00 E-value=2e-35 Score=282.31 Aligned_cols=182 Identities=19% Similarity=0.237 Sum_probs=162.6
Q ss_pred CCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeEE
Q psy12586 2 NTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFD 79 (309)
Q Consensus 2 ~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW~ 79 (309)
.||+|+++.|+++ .+|+|||.+||+|+ +|.+.++|| +|+.+++.+.|.+...+.+. .+ ...++.+
T Consensus 154 pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy----~Yn~~~v~~~W~~~~pv~~~---~~------i~LPdf~ 220 (457)
T KOG3644|consen 154 PNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESY----AYNTDDVRLEWKEWNPVQVK---KD------IKLPDFS 220 (457)
T ss_pred cCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEe----ccccceEEEEecCCCCcccc---cC------ccCCcee
Confidence 5999999999999 99999999999999 999999999 99999999999876544332 22 3345666
Q ss_pred EeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCC-CceEEEEehhHHHHHHHH
Q psy12586 80 LLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSES-GEKVTLGISALLSMTVFL 158 (309)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~-~~Ri~l~it~lLt~~~~l 158 (309)
+.+.........|. +|.|+++.++|.++|+.+||+++.|+|+.+++++||++|||++++ ++|++||+|+||++++..
T Consensus 221 l~~~~~~~~~~~y~--~G~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~ 298 (457)
T KOG3644|consen 221 LPSFSTEKCTGSYT--TGVYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQS 298 (457)
T ss_pred ccceeecccccccc--CcceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHh
Confidence 77766665555666 899999999999999999999999999999999999999999997 999999999999999999
Q ss_pred HHHhhcCCCCcc---ccchhhhhhhHHHHHHHHHhhcccceeeeC
Q psy12586 159 MTIRETLPPTEN---ISEYVLVSSDHFRVKYIIVADELLPTRYRG 200 (309)
Q Consensus 159 ~~l~~~lP~~s~---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~ 200 (309)
..+..+||++|| ||+|+++|++|+|++ +++++++|+..|.
T Consensus 299 ~~i~~~LP~VSYvKAIDVWm~~C~~FIF~s--LlE~A~V~~~~~~ 341 (457)
T KOG3644|consen 299 GGIRRNLPKVSYVKAIDVWMGVCMTFIFGS--LLELAVVNYVGRR 341 (457)
T ss_pred cchhhcCCchhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhc
Confidence 999999999999 999999999999995 7888888887764
No 6
>KOG3642|consensus
Probab=100.00 E-value=1.9e-34 Score=267.61 Aligned_cols=185 Identities=18% Similarity=0.304 Sum_probs=162.8
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
+.||+|+|+.|+++ +.|+|++.+||||. .|++.|||+ +|..++++|.|..+ .+.+. .+. .....++
T Consensus 151 ~~dG~vlyt~RlTi~A~C~m~l~~fPMD~haCpl~fgSy----~Y~~~evvY~W~~~-~VeV~--~~~-----~~~L~Qf 218 (466)
T KOG3642|consen 151 YIDGTVLYTMRLTIPAECPMHLARFPMDSHACPLKFGSY----AYPGSEVVYKWKKR-SVEVN--ETD-----SWSLDQF 218 (466)
T ss_pred eECCcceEEEEEeecccCcchhhcCCCCcccCcceeccc----CcCCCCEEEEEecc-cEEEc--CCC-----Cccccce
Confidence 36999999999999 99999999999999 999999999 99999999999876 33321 111 1234566
Q ss_pred EEeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCC-CceEEEEehhHHHHHHH
Q psy12586 79 DLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSES-GEKVTLGISALLSMTVF 157 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~-~~Ri~l~it~lLt~~~~ 157 (309)
++.+.+...+...- .+|+|+.+++.|.|+|+.|||++++|+||++.++|||++||+..++ ++|.++|+|++|+|++.
T Consensus 219 ~l~g~~~~te~i~t--~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtL 296 (466)
T KOG3642|consen 219 DLLGVSVGTEDIKT--SSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTL 296 (466)
T ss_pred eeecccccccceEe--cCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeee
Confidence 77887776555443 4789999999999999999999999999999999999999999997 99999999999999999
Q ss_pred HHHHhhcCCCCcc---ccchhhhhhhHHHHHHHHHhhcccceeeeCC
Q psy12586 158 LMTIRETLPPTEN---ISEYVLVSSDHFRVKYIIVADELLPTRYRGR 201 (309)
Q Consensus 158 l~~l~~~lP~~s~---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~ 201 (309)
......++|++|| +|+|.++|++|+|++ +++++++|++...+
T Consensus 297 s~~aR~slPKVsy~TAmD~fIavCf~FvFsa--liEfa~vNYft~~~ 341 (466)
T KOG3642|consen 297 STSARKSLPKVSYATALDVFIAVCFIFVFAA--LVEFAVVNYFTLNQ 341 (466)
T ss_pred eehhccCCCccccchhHHHHHHHHHHHHHHH--HHHHHheeeeeecc
Confidence 9999999999999 999999999999996 56999999998543
No 7
>KOG1647|consensus
Probab=99.81 E-value=1.3e-20 Score=158.97 Aligned_cols=81 Identities=59% Similarity=0.810 Sum_probs=75.5
Q ss_pred cccccccccccchhhhHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy12586 207 FTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTR 286 (309)
Q Consensus 207 ~~l~~~l~~la~~e~~~~~L~~ei~~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~~~~~~~~ 286 (309)
..+.+.+++||++++++..|.+.++.|+|||||+||++||++++|+.||.++|||.|||||||||+++++|.++.++...
T Consensus 139 ~kAve~LVelasLqtsf~~Lde~ik~TNrRVNAiEhvIIPrlenTi~YI~sELdE~eRedF~RLKKiQ~~K~~~~ek~~a 218 (255)
T KOG1647|consen 139 TKAVELLVELASLQTSFRTLDEAIKVTNRRVNAIEHVIIPRLENTIAYIVSELDELEREDFYRLKKIQAKKREAKEKADA 218 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999887766554
Q ss_pred H
Q psy12586 287 E 287 (309)
Q Consensus 287 ~ 287 (309)
+
T Consensus 219 ~ 219 (255)
T KOG1647|consen 219 E 219 (255)
T ss_pred H
Confidence 3
No 8
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=99.77 E-value=1.2e-19 Score=155.96 Aligned_cols=76 Identities=53% Similarity=0.746 Sum_probs=71.5
Q ss_pred cccccccccccchhhhHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHH
Q psy12586 207 FTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALE 282 (309)
Q Consensus 207 ~~l~~~l~~la~~e~~~~~L~~ei~~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~~~~ 282 (309)
..+.+.++++|+.|+++++|++|+++|+|||||+|+++||+++++|+||+..|||+|||+|+|+|++|+++++...
T Consensus 134 ~elle~li~lae~e~~~~~L~~Ei~~T~RRVNalE~~iIP~l~~tikyI~~~LeE~eRe~f~RlK~iK~~~e~~~~ 209 (211)
T COG1394 134 EELLEKLIELAELETTLRLLLEEIRKTKRRVNALEYVIIPRLENTIKYIESKLEEREREDFVRLKKIKKKKEAKTK 209 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 4588889999999999999999999999999999999999999999999999999999999999999998776543
No 9
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=99.76 E-value=1.6e-19 Score=157.71 Aligned_cols=73 Identities=48% Similarity=0.668 Sum_probs=69.4
Q ss_pred cccccccccccchhhhHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHH
Q psy12586 207 FTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKRE 279 (309)
Q Consensus 207 ~~l~~~l~~la~~e~~~~~L~~ei~~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~ 279 (309)
..+.+.++++|+.++++.+|+.+|++|+|||||||+++||+++++|+||+.+|||+|||+|+|+|++|+++++
T Consensus 136 ~~~l~~li~lA~~e~~~~~L~~eI~~T~RRVNALE~vvIP~l~~~ik~I~~~LeE~EREef~RlK~vK~k~~~ 208 (209)
T TIGR00309 136 EEAVELIVELAEIETTIRLLAEEIEITKRRVNALEHVIIPRLKNTIKYINMRLDEMDRENFVRLKKIKSSKEK 208 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhc
Confidence 4578889999999999999999999999999999999999999999999999999999999999999988753
No 10
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=99.74 E-value=5.9e-19 Score=152.70 Aligned_cols=73 Identities=27% Similarity=0.274 Sum_probs=69.6
Q ss_pred cccccccccccchhhhHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHH
Q psy12586 207 FTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKRE 279 (309)
Q Consensus 207 ~~l~~~l~~la~~e~~~~~L~~ei~~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~ 279 (309)
..+.+.++++|+.|+++.+|+.||++|+|||||||+++||+++++|+||+.+|||+|||+|+|+|++|++.++
T Consensus 126 ~~ll~~~i~lAe~E~~l~~L~~ei~kT~rRVNalE~v~IP~~~~~ik~I~~~LeE~ERe~~~RlK~iK~~~~~ 198 (201)
T PRK02195 126 KELVQLKIEAEVLQERLLLLEEELRKTTQRVNLFEKVLIPETKANIKKIKIFLGDQETAAVVRQKIAKKKIEK 198 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence 4578889999999999999999999999999999999999999999999999999999999999999988765
No 11
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=99.73 E-value=6.4e-19 Score=152.68 Aligned_cols=70 Identities=57% Similarity=0.796 Sum_probs=67.5
Q ss_pred cccccccccccchhhhHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHH
Q psy12586 207 FTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDK 276 (309)
Q Consensus 207 ~~l~~~l~~la~~e~~~~~L~~ei~~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~ 276 (309)
..+.+.++++|+.++++.+|+.++++|+|||||||+++||+++++|+||+.+|||+|||+|+|+|++|+|
T Consensus 127 ~~~l~~~i~lA~~e~~~~~L~~ei~kT~RRVNALE~vlIP~l~~tik~I~~~LeE~EREef~RlK~iK~K 196 (196)
T PF01813_consen 127 EELLELLIELAELETALRRLAEEIRKTQRRVNALEKVLIPRLEETIKYIRSELEEREREEFFRLKKIKKK 196 (196)
T ss_dssp HHHHHHHHCHHHHHHHHHHHCHHHHHHCHHHHHHHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4588889999999999999999999999999999999999999999999999999999999999999975
No 12
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=99.72 E-value=7.7e-19 Score=152.92 Aligned_cols=69 Identities=54% Similarity=0.781 Sum_probs=66.2
Q ss_pred cccccccccccchhhhHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHH
Q psy12586 207 FTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQD 275 (309)
Q Consensus 207 ~~l~~~l~~la~~e~~~~~L~~ei~~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~ 275 (309)
..+.+.++++|+.++++.+|+.+|++|+|||||||+++||+++++|+||+.+|||+|||+|+|+|++|+
T Consensus 136 ~~~l~~li~lA~~e~~~~~L~~ei~kT~RRVNALE~vvIP~le~~ik~I~~~LeE~EReef~RlK~iK~ 204 (204)
T PRK00373 136 EELLEKILELAEVEKTIQLLADEIEKTKRRVNALEYVIIPRLEETIKYIKMKLDEMERENFVRLKKIKS 204 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 457888999999999999999999999999999999999999999999999999999999999999984
No 13
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.72 E-value=8.6e-20 Score=157.24 Aligned_cols=96 Identities=40% Similarity=0.659 Sum_probs=77.1
Q ss_pred eehhhHHHhhhheeeEEecCCCC-ceEEEEehhHHHHHHHHHHHhhcCCCCcc---ccchhhhhhhHHHHHHHHHhhccc
Q psy12586 119 LILPCILINCIALLVFYVPSESG-EKVTLGISALLSMTVFLMTIRETLPPTEN---ISEYVLVSSDHFRVKYIIVADELL 194 (309)
Q Consensus 119 ~iiP~~li~~ls~i~Fwlp~~~~-~Ri~l~it~lLt~~~~l~~l~~~lP~~s~---i~~y~~~~~~~v~~s~ii~~~~v~ 194 (309)
+|+||++++++||++||+|++++ ||+++|+|++|++++++..+++.||++|| ++.|+..|+++++++++..+++++
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~ 80 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAVVVY 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhhhhh
Confidence 47999999999999999999997 99999999999999999999999999999 777888887777776688888899
Q ss_pred ceeeeCCcccccccccccccccc
Q psy12586 195 PTRYRGRAQSQEFTLPEQVRPLA 217 (309)
Q Consensus 195 n~~~r~~~~~~~~~l~~~l~~la 217 (309)
|++++++.. +++++|++++.
T Consensus 81 ~~~~~~~~~---~~~~~~~r~~~ 100 (237)
T PF02932_consen 81 NIHHRGPRT---RPMPPWVRRLF 100 (237)
T ss_dssp HHHHHSTTT----S---------
T ss_pred hhccccccc---ccccchhHHHH
Confidence 998887633 67888888765
No 14
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.68 E-value=3.3e-16 Score=137.50 Aligned_cols=105 Identities=19% Similarity=0.336 Sum_probs=88.2
Q ss_pred CCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeEE
Q psy12586 2 NTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFD 79 (309)
Q Consensus 2 ~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW~ 79 (309)
+||+|.|..++++ +.|+||+.+||||. +|.|.|+|| .|...++.+.+..... -.......++.++..++||+
T Consensus 110 ~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~----~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~~~~ew~ 183 (217)
T PF02931_consen 110 SDGTVRYSPRFTLTFSCPMDLRDFPFDSQNCSIKFGSW----SYNSEEVQLKWENKNP--PIDENDEVSLSDFVSNSEWK 183 (217)
T ss_dssp TTSEEEEEEEEEEEEEECETTTSSSSSEEEEEEEEEES----SSSTTTEEEEESCSSS---TTSSTTTSCTTCETTSSEE
T ss_pred ccchheeeecccccccccccccccccccceeEEEEecc----cccccceeeeecccCc--eeeeeccccHHHccccceEE
Confidence 7999999999999 99999999999999 999999999 7777777776654221 00112456778899999999
Q ss_pred EeeeeEEEEEEeccCCCCC-cceEEEEEEEEeec
Q psy12586 80 LLSYSSVKNVVNYSCCVEP-YPDITYYISLRRRP 112 (309)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~-y~~l~~~~~l~R~~ 112 (309)
+.+.........+.++++. |+.+.+.|+|+|+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~ 217 (217)
T PF02931_consen 184 IVSVTSTRRETTYGCYNEPTYSMLSFTFTLKRRP 217 (217)
T ss_dssp EEEEEEEEEEEEESTSSSCSEEEEEEEEEEEEST
T ss_pred EEeeEEEEEEEccCCcCCCCEeeEEEEEEEEECc
Confidence 9999888888878878886 99999999999997
No 15
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=93.90 E-value=0.079 Score=47.72 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=42.5
Q ss_pred ceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCC---CceEEEEehhHHHHHHHHH-HHhhcCCCCcc
Q psy12586 100 PDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSES---GEKVTLGISALLSMTVFLM-TIRETLPPTEN 170 (309)
Q Consensus 100 ~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~---~~Ri~l~it~lLt~~~~l~-~l~~~lP~~s~ 170 (309)
....+.++++|..+--.+.+++= .++..|+.+.++.-... ..++...+.+.++.++|.+ -+++.+|..+-
T Consensus 152 ~~~~~~i~l~Rs~~~~~F~~~i~-~vm~~L~~~al~~ai~~~~~rr~~~~~~l~w~aA~LFAlp~lRN~lPGaPP 225 (256)
T PF14494_consen 152 GGDGVDITLKRSRGVLFFALFIC-LVMWALATLALFVAIQVLRRRRKFEPPMLTWMAAMLFALPPLRNILPGAPP 225 (256)
T ss_pred CceeEEEEEEccCcceehHHHHH-HHHHHHHHHHHHHHHHHHhCccccccchHHHHHHHHHhhhhHhccCCCCCC
Confidence 45678889999888766544333 33344555555554331 3455555555555555544 47899988777
No 16
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.91 E-value=8.4 Score=32.77 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=22.2
Q ss_pred ccccchhhhHHHHHHHHHhhhhcccccccc
Q psy12586 214 RPLASLETSHKTLNKVIRQTNQRVNALEYV 243 (309)
Q Consensus 214 ~~la~~e~~~~~L~~ei~~t~rRvnale~~ 243 (309)
.++.+.+..+..+..++.+.+++.+.++.-
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~ 110 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESE 110 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777788888888887777776653
No 17
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=76.14 E-value=1.8 Score=31.38 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHhhhhccccccccc
Q psy12586 220 ETSHKTLNKVIRQTNQRVNALEYVV 244 (309)
Q Consensus 220 e~~~~~L~~ei~~t~rRvnale~~~ 244 (309)
+..+..|.+..++-+.|+.+||.++
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888889999999999876
No 18
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=73.54 E-value=46 Score=32.43 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHH
Q psy12586 244 VIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREAL 281 (309)
Q Consensus 244 ~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~~~ 281 (309)
-+|++.++++.+...-.++-.|+..+-|.++++++++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~ 358 (429)
T PRK00247 321 RAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAE 358 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999998888999999999988766654
No 19
>PRK09458 pspB phage shock protein B; Provisional
Probab=65.76 E-value=6.5 Score=28.38 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHhhhhccccccccc
Q psy12586 219 LETSHKTLNKVIRQTNQRVNALEYVV 244 (309)
Q Consensus 219 ~e~~~~~L~~ei~~t~rRvnale~~~ 244 (309)
-+..+..|.+..++-+.|+.+||.++
T Consensus 40 d~~~L~~L~~~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 40 EQQRLAQLTEKAERMRERIQALEAIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777788888999999998876
No 20
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=63.25 E-value=33 Score=29.49 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=35.6
Q ss_pred ccccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy12586 238 NALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKE 295 (309)
Q Consensus 238 nale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~~~~~~~~~~~~~~~~~ 295 (309)
...|--.+++.++++.--+..++|.-.+.. ...|+++.++++...++.++.+.+-
T Consensus 71 ~~~dpd~v~~rqEa~eaAR~RmQEE~dakA---~~~kEKq~q~EEEKRrqkie~we~~ 125 (190)
T PF06936_consen 71 AKKDPDVVVRRQEAMEAARRRMQEELDAKA---EEYKEKQKQEEEEKRRQKIEMWESM 125 (190)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777888888888888777666654 3445555555656666666655543
No 21
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=58.13 E-value=7.2 Score=28.26 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHhhhhccccccccc
Q psy12586 220 ETSHKTLNKVIRQTNQRVNALEYVV 244 (309)
Q Consensus 220 e~~~~~L~~ei~~t~rRvnale~~~ 244 (309)
+..+..|.+..++-+.|+.+||.++
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677778888899999999876
No 22
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=52.85 E-value=21 Score=21.98 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=16.8
Q ss_pred HHHHHHHhhchhhhhHHHHHH
Q psy12586 251 TLDYIKSELDEMEREEFYRLK 271 (309)
Q Consensus 251 ~i~~i~~~l~e~ere~~~r~k 271 (309)
-..-|-.+|+.+++|.|+++-
T Consensus 14 L~~~ID~ALd~~D~e~F~~Ls 34 (37)
T PF08858_consen 14 LLELIDEALDNRDKEWFYELS 34 (37)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 346788999999999999885
No 23
>KOG3878|consensus
Probab=49.49 E-value=64 Score=30.14 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=57.4
Q ss_pred CCccccccccccccccccchhhhHHHHHHHHHhhhhc---cccccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHH
Q psy12586 200 GRAQSQEFTLPEQVRPLASLETSHKTLNKVIRQTNQR---VNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDK 276 (309)
Q Consensus 200 ~~~~~~~~~l~~~l~~la~~e~~~~~L~~ei~~t~rR---vnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~ 276 (309)
+|-.+..++...|+--+..-.+..+.+..++.+.+-. |..|+ .+.|-++.-|...+..=||.++|.=-|+..=|+.
T Consensus 71 Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~~sre~AM~~FV~Lld-r~C~~F~~yia~~k~~kde~lkE~e~r~~ee~~e 149 (469)
T KOG3878|consen 71 GPFNTDRAPALGVLDVIGNDRQQHWQLLGEISREQAMEGFVDLLD-RMCSAFRPYIAAVKQDKDETLKEKELRLMEEKKE 149 (469)
T ss_pred CCCCcccCcccceeecccChHHHHHHHHhcccHHHHHHHHHHHHH-hcchhhhhHHHHhhhhhhhHHHHHHHHHHHhhhc
Confidence 4444455777778877888888888887777554433 22233 2345556656666666667777666666665555
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q psy12586 277 KREALERRTREQIERHLKEE 296 (309)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~ 296 (309)
.++.++..+++-+|+-.+++
T Consensus 150 ~~~lQe~~qr~l~ee~~~~E 169 (469)
T KOG3878|consen 150 ARELQENAQRELLEEGYKEE 169 (469)
T ss_pred chhHHHHHHHHHHHhhhhHH
Confidence 55555555555555444443
No 24
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=47.42 E-value=1.3e+02 Score=26.13 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHhhcCCCCcc
Q psy12586 150 ALLSMTVFLMTIRETLPPTEN 170 (309)
Q Consensus 150 ~lLt~~~~l~~l~~~lP~~s~ 170 (309)
+++.++.|+..-+..+|..-.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~ 37 (205)
T PRK06231 17 SFLIISLFLVSCTENVEELKS 37 (205)
T ss_pred HHHHHHHHHHHccCChhhcCH
Confidence 344445555555555555443
No 25
>PF14809 TGT_C1: C1 domain of tRNA-guanine transglycosylase dimerisation; PDB: 1J2B_A 1IT8_A 1IT7_B 1IQ8_A.
Probab=47.28 E-value=14 Score=25.43 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=9.8
Q ss_pred hhHHHHHHhcCCcccc
Q psy12586 292 HLKEEEEHLKHPIFQK 307 (309)
Q Consensus 292 ~~~~~~~~~~~~~~~~ 307 (309)
-.+.-.+.+.||||..
T Consensus 31 v~~kF~e~v~HPIFGe 46 (70)
T PF14809_consen 31 VKEKFPETVEHPIFGE 46 (70)
T ss_dssp HHHHH--EEEETTTEE
T ss_pred HHHhccccccCccccc
Confidence 3344567899999963
No 26
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=46.20 E-value=79 Score=23.17 Aligned_cols=38 Identities=39% Similarity=0.509 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHhc
Q psy12586 264 REEFYRLKKIQD-----KKREALERRTREQIERHLKEEEEHLK 301 (309)
Q Consensus 264 re~~~r~k~~k~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (309)
.|+--|||--|+ ++.++-+++.++++|+-++|.|++=+
T Consensus 37 kEekrrLkeEkKkAKAeqrA~EfEqRakehqErDEkElEERrK 79 (86)
T PF15437_consen 37 KEEKRRLKEEKKKAKAEQRAREFEQRAKEHQERDEKELEERRK 79 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665554 34555667888899999999988743
No 27
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=42.53 E-value=71 Score=27.48 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=8.7
Q ss_pred HHHhhcccceeeeCC
Q psy12586 187 IIVADELLPTRYRGR 201 (309)
Q Consensus 187 ii~~~~v~n~~~r~~ 201 (309)
.+.+.++....|+.+
T Consensus 82 PVaSHaIARAAyr~G 96 (197)
T PRK12585 82 PVASHLINRAAYDTG 96 (197)
T ss_pred HHHHHHHHHHHHHcC
Confidence 455555666666653
No 28
>KOG3612|consensus
Probab=40.61 E-value=1.5e+02 Score=29.62 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHH-HHH-HHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy12586 222 SHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRL-KKI-QDKKREALERRTREQIERHLKEEEEH 299 (309)
Q Consensus 222 ~~~~L~~ei~~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~-k~~-k~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (309)
+..+|..|.++.+++.+--=...+-.++..+.+-+..||+.-+|++... |+. -+++++-.+..+.|=|..=++|..+|
T Consensus 461 ~t~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~~n~~e~~kkl~~~~qr~l~etKkKQWC~nC~~EAiy~ 540 (588)
T KOG3612|consen 461 ATEKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHAENIKEEIKKLAEEHQRALAETKKKQWCYNCLDEAIYH 540 (588)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3456777777777776655555677888999999999999999988432 233 33455555556666666666665554
No 29
>KOG1532|consensus
Probab=40.58 E-value=75 Score=29.31 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy12586 247 RLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEE 298 (309)
Q Consensus 247 ~~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~~~~~~~~~~~~~~~~~~~~ 298 (309)
.+..-...|...+||-+++..-...+.|+.|+...+++++++.|.-+|.-..
T Consensus 251 G~ddf~~av~~~vdEy~~~ykp~~Ek~k~~k~~~ee~~k~k~le~l~kdm~~ 302 (366)
T KOG1532|consen 251 GFDDFFTAVDESVDEYEEEYKPEYEKKKAEKRLAEEERKKKQLEKLMKDMHV 302 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHhccCc
Confidence 3455567788999999999888888888888888888888888887776543
No 30
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=40.56 E-value=25 Score=25.14 Aligned_cols=8 Identities=38% Similarity=0.709 Sum_probs=3.5
Q ss_pred HHHhhchh
Q psy12586 255 IKSELDEM 262 (309)
Q Consensus 255 i~~~l~e~ 262 (309)
|+.+++|+
T Consensus 39 IE~~ieem 46 (80)
T COG4710 39 IEAYIEEM 46 (80)
T ss_pred HHHHHHHH
Confidence 34444444
No 31
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=38.09 E-value=60 Score=23.92 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12586 261 EMEREEFYRLKKIQDKKREALERRTREQ 288 (309)
Q Consensus 261 e~ere~~~r~k~~k~~~~~~~~~~~~~~ 288 (309)
+.-+.|.-||..|++.++++..+++.+.
T Consensus 52 ~eakaDLaRLAlIRkqREeaA~kR~aek 79 (82)
T PF10252_consen 52 DEAKADLARLALIRKQREEAAAKREAEK 79 (82)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999998888777765543
No 32
>PRK01919 tatB sec-independent translocase; Provisional
Probab=37.58 E-value=1.1e+02 Score=25.66 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=6.8
Q ss_pred cccccccccccch
Q psy12586 207 FTLPEQVRPLASL 219 (309)
Q Consensus 207 ~~l~~~l~~la~~ 219 (309)
..+|+..+.+...
T Consensus 23 ekLP~~aRtlGk~ 35 (169)
T PRK01919 23 ERLPRVARTAGAL 35 (169)
T ss_pred hHhHHHHHHHHHH
Confidence 4566655554433
No 33
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=37.37 E-value=1.5e+02 Score=29.00 Aligned_cols=45 Identities=31% Similarity=0.443 Sum_probs=23.5
Q ss_pred HHHHHHhhchhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy12586 252 LDYIKSELDEMEREEFYR---LKKIQDKKREALERRTREQIERHLKEEEE 298 (309)
Q Consensus 252 i~~i~~~l~e~ere~~~r---~k~~k~~~~~~~~~~~~~~~~~~~~~~~~ 298 (309)
+|-++.-.|-.|.|-.-- ||+.|++|+++ ...-+.-|+|++|+|.
T Consensus 25 vKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeA--l~l~~e~e~kLee~e~ 72 (436)
T PF01093_consen 25 VKQMKTMMEKTEEEHKELMKTLEKSKKEKEEA--LKLANEVEEKLEEEEE 72 (436)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 355555555444444443 44444444443 3344556777877765
No 34
>PLN03086 PRLI-interacting factor K; Provisional
Probab=36.40 E-value=47 Score=33.53 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=14.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12586 261 EMEREEFYRLKKIQDKKREALERRTREQ 288 (309)
Q Consensus 261 e~ere~~~r~k~~k~~~~~~~~~~~~~~ 288 (309)
.+||.+-.|+|.=+++|.++..++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (567)
T PLN03086 16 QRERKQRAKLKLERERKAKEEAAKQREA 43 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444444433
No 35
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=36.38 E-value=82 Score=28.05 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=27.1
Q ss_pred HhhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHH
Q psy12586 231 RQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRL 270 (309)
Q Consensus 231 ~~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~ 270 (309)
.|+-+.+|.-..--.|..+.+-+++.+ .||.||...++.
T Consensus 153 ~K~~k~i~p~k~~~~~~~k~~kk~i~s-~DEgEk~i~y~~ 191 (248)
T PF11368_consen 153 RKTIKKIRPEKLPSFFDPKFVKKWIES-CDEGEKQINYEA 191 (248)
T ss_pred HHHHHHhCcccCCCCCChHHHHHHHHh-CCHHHHHHHHHH
Confidence 344444555555556777888889986 799999887653
No 36
>PF13974 YebO: YebO-like protein
Probab=32.92 E-value=17 Score=26.66 Aligned_cols=50 Identities=22% Similarity=0.163 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhhhhccccccccchHHHH-HHHHHHHHhhchhhhhHHHHH
Q psy12586 221 TSHKTLNKVIRQTNQRVNALEYVVIPRLA-RTLDYIKSELDEMEREEFYRL 270 (309)
Q Consensus 221 ~~~~~L~~ei~~t~rRvnale~~~ip~~~-~~i~~i~~~l~e~ere~~~r~ 270 (309)
|..-.|.+++-+-|+|-|+|=..+.|.-. +.-.+....=++.+-++|.|+
T Consensus 26 NEQI~LL~~ileqQKrQn~LL~rL~~~~~~~~~~~~~~~~~~~~~~df~rl 76 (80)
T PF13974_consen 26 NEQIELLEEILEQQKRQNALLRRLCEANEEKKSEPENDSDVEDEDDDFKRL 76 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccchHHHHHHh
Confidence 34456777888888888887766666544 222333333444444555543
No 37
>PF15363 DUF4596: Domain of unknown function (DUF4596)
Probab=32.31 E-value=65 Score=20.72 Aligned_cols=10 Identities=20% Similarity=0.584 Sum_probs=7.7
Q ss_pred ecCeEEEeee
Q psy12586 74 VNGEFDLLSY 83 (309)
Q Consensus 74 ~~~eW~l~~~ 83 (309)
..|||.++..
T Consensus 33 pqGeWTivEl 42 (46)
T PF15363_consen 33 PQGEWTIVEL 42 (46)
T ss_pred CCCceEEEEE
Confidence 4689998765
No 38
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=30.95 E-value=1.2e+02 Score=27.52 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy12586 270 LKKIQDKKREALERRTREQIERHLKE 295 (309)
Q Consensus 270 ~k~~k~~~~~~~~~~~~~~~~~~~~~ 295 (309)
+..+|++++....+.+|+.+|+|.++
T Consensus 22 Ie~lk~~~~~~s~k~~GE~lE~~~e~ 47 (267)
T PF09903_consen 22 IEELKRKAEQGSTKLQGEVLEQHCEE 47 (267)
T ss_pred HHHHHHHHHhhhHHHHhHHHHHHHHH
Confidence 34455777777888999999999988
No 39
>KOG0163|consensus
Probab=29.38 E-value=3.3e+02 Score=28.71 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=10.0
Q ss_pred HhhhhccccccccchHHHHH
Q psy12586 231 RQTNQRVNALEYVVIPRLAR 250 (309)
Q Consensus 231 ~~t~rRvnale~~~ip~~~~ 250 (309)
.+.-.|++.-|+..|.+++.
T Consensus 906 e~~~~~l~sk~~q~~~e~er 925 (1259)
T KOG0163|consen 906 EKLVKRLDSKEQQQIEELER 925 (1259)
T ss_pred HHHHHHhhhhHHHHHHHHHH
Confidence 33444555555555555543
No 40
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=27.53 E-value=3.3e+02 Score=23.72 Aligned_cols=53 Identities=28% Similarity=0.393 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhHHHHHHh
Q psy12586 248 LARTLDYIKSELDEMEREEFYRLKKIQDKKREA-------------LERRTREQIERHLKEEEEHL 300 (309)
Q Consensus 248 ~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 300 (309)
+.+-|.+|....-++-||++=+|-..-.|-++- .-...++.+++||..+|.-|
T Consensus 73 ~s~lIdhIi~ryH~~hReqlpeLi~latKverVHgd~p~~p~gl~~~L~~l~~eL~~HMmKEEqIl 138 (221)
T COG2846 73 LSELIDHIIVRYHERHREQLPELIPLATKVERVHGDKPSCPAGLAELLEALKEELESHMMKEEQIL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999988777665442 33366788999998776544
No 41
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=26.23 E-value=1.8e+02 Score=22.79 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=13.1
Q ss_pred ccchhhhhhhHHHHHHHHHhhccc
Q psy12586 171 ISEYVLVSSDHFRVKYIIVADELL 194 (309)
Q Consensus 171 i~~y~~~~~~~v~~s~ii~~~~v~ 194 (309)
-..||..-++..++|+.+++++++
T Consensus 60 ~~lffvglii~LivSLaLVsFvIF 83 (128)
T PF15145_consen 60 RSLFFVGLIIVLIVSLALVSFVIF 83 (128)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHH
Confidence 455665555555555555555443
No 42
>smart00030 CLb CLUSTERIN Beta chain.
Probab=25.85 E-value=4.4e+02 Score=22.88 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=21.5
Q ss_pred hhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy12586 261 EMEREEF-YRLKKIQDKKREALERRTREQIERHLKEEEE 298 (309)
Q Consensus 261 e~ere~~-~r~k~~k~~~~~~~~~~~~~~~~~~~~~~~~ 298 (309)
+.||.++ -.|++.|++|+++.... +.-|+|++|+|.
T Consensus 42 ~eeh~~ll~tLe~~kk~KeeAlk~~--~e~e~kL~E~~~ 78 (206)
T smart00030 42 NKERKSLLSTLEEAKKKKEEALKDT--RESEEKLKESQG 78 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3455555 55777777777665543 345567776664
No 43
>KOG1029|consensus
Probab=25.62 E-value=2.4e+02 Score=29.73 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=9.2
Q ss_pred HHHHhhchhhhhHHHHHHH
Q psy12586 254 YIKSELDEMEREEFYRLKK 272 (309)
Q Consensus 254 ~i~~~l~e~ere~~~r~k~ 272 (309)
.=+.+++..||||--|-.+
T Consensus 342 reree~eqkEreE~ekker 360 (1118)
T KOG1029|consen 342 REREEVEQKEREEEEKKER 360 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345555555555544333
No 44
>KOG4196|consensus
Probab=25.55 E-value=3.6e+02 Score=21.71 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=14.7
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHH
Q psy12586 251 TLDYIKSELDEMEREEFYRLKKIQ 274 (309)
Q Consensus 251 ~i~~i~~~l~e~ere~~~r~k~~k 274 (309)
+++....+|--..|||.+|+|.=+
T Consensus 33 SVReLNr~LrG~~reEVvrlKQrR 56 (135)
T KOG4196|consen 33 SVRELNRHLRGLSREEVVRLKQRR 56 (135)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHH
Confidence 344555566667777777776533
No 45
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=25.20 E-value=38 Score=26.47 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=26.0
Q ss_pred hhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHHH
Q psy12586 232 QTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLK 271 (309)
Q Consensus 232 ~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k 271 (309)
.....+|+++|+. .|.+..+.+.||+.|.++.
T Consensus 47 ~~~~~~Nvl~Hi~--------Gyfk~~ls~~EK~~~~~~i 78 (117)
T PF08349_consen 47 TRGSHINVLQHIF--------GYFKKKLSSEEKQHFLDLI 78 (117)
T ss_pred CchhHHHHHHHHH--------HHHHHhCCHHHHHHHHHHH
Confidence 3556688888875 7999999999999998764
No 46
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.44 E-value=97 Score=23.83 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=7.2
Q ss_pred HhhchhhhhHH
Q psy12586 257 SELDEMEREEF 267 (309)
Q Consensus 257 ~~l~e~ere~~ 267 (309)
.++||.-|+++
T Consensus 65 dyiEe~AR~~L 75 (105)
T PRK00888 65 EAIEERARNEL 75 (105)
T ss_pred HHHHHHHHHHc
Confidence 46677777664
No 47
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=23.53 E-value=3.3e+02 Score=20.52 Aligned_cols=57 Identities=16% Similarity=0.334 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q psy12586 220 ETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREA 280 (309)
Q Consensus 220 e~~~~~L~~ei~~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~~ 280 (309)
+..+..+...+...+..++.... .+......+...|++++.+-.-++....+.+.+.
T Consensus 20 ~~~~~~l~~~~~~l~~~~~~~~~----~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~ 76 (127)
T smart00502 20 EDALKQLISIIQEVEENAADVEA----QIKAAFDELRNALNKRKKQLLEDLEEQKENKLKV 76 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333 3456667777888888888877777777655444
No 48
>KOG4552|consensus
Probab=22.41 E-value=1.7e+02 Score=25.49 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=31.2
Q ss_pred HHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCcccc
Q psy12586 253 DYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKHPIFQK 307 (309)
Q Consensus 253 ~~i~~~l~e~ere~~~r~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (309)
+-.....+..+||.-+|--..+-.|+ -+.-||++.++|+-|+-|+-.+||.
T Consensus 61 ~llkla~eq~k~e~~m~~Lea~VEkr----D~~IQqLqk~LK~aE~iLtta~fqA 111 (272)
T KOG4552|consen 61 TLLKLAPEQQKREQLMRTLEAHVEKR----DEVIQQLQKNLKSAEVILTTACFQA 111 (272)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655432221111 2345678888899999888888873
No 49
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=22.00 E-value=4.8e+02 Score=21.93 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=6.7
Q ss_pred hHHHHHHHHHhhhhccc
Q psy12586 222 SHKTLNKVIRQTNQRVN 238 (309)
Q Consensus 222 ~~~~L~~ei~~t~rRvn 238 (309)
.+.....+.++.++..+
T Consensus 66 ~I~~~l~~Ae~~~~eA~ 82 (181)
T PRK13454 66 TITNDLAAAEELKQKAV 82 (181)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 33333334444444333
No 50
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.48 E-value=1.1e+02 Score=24.53 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=29.5
Q ss_pred ccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHH
Q psy12586 242 YVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREAL 281 (309)
Q Consensus 242 ~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~~~ 281 (309)
..-+|.|.-+-..+-..|.|.||++|+....+.+.-.++.
T Consensus 84 ~~~l~~L~~tqal~Ll~lpeeeR~~fi~~~dv~~Mt~REL 123 (130)
T PF11300_consen 84 SSALPNLSYTQALILLGLPEEEREEFIEENDVERMTVREL 123 (130)
T ss_pred chHHHhhhHHHHHHHHcCCchHHHHHHHHhhhccccHHHH
Confidence 4456677767677788999999999998887765544433
No 51
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=21.48 E-value=96 Score=17.76 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy12586 276 KKREALERRTREQIERHL 293 (309)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~ 293 (309)
++++..++.++.++|-|+
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 345566667778888774
No 52
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=20.64 E-value=1.4e+02 Score=24.81 Aligned_cols=28 Identities=4% Similarity=0.008 Sum_probs=14.3
Q ss_pred cchhhhhhhHHHHHHHHHhhcccceeeeC
Q psy12586 172 SEYVLVSSDHFRVKYIIVADELLPTRYRG 200 (309)
Q Consensus 172 ~~y~~~~~~~v~~s~ii~~~~v~n~~~r~ 200 (309)
+.|+.=...++++. +++..+++++..++
T Consensus 8 glFlaK~vTvVvaI-~~vv~~I~~~~~k~ 35 (155)
T PF08496_consen 8 GLFLAKIVTVVVAI-LAVVGLIVAAAQKK 35 (155)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhccC
Confidence 45555555555443 44444555555554
Done!