Query psy12586
Match_columns 309
No_of_seqs 271 out of 1549
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 23:07:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aq5_A Acetylcholine receptor 100.0 1.5E-44 5.1E-49 348.9 5.1 200 1-218 135-341 (461)
2 2bg9_A Acetylcholine receptor 100.0 2.4E-43 8.3E-48 332.6 6.9 188 1-203 111-305 (370)
3 2bg9_C Acetylcholine receptor 100.0 2.8E-43 9.7E-48 331.9 4.9 185 1-203 113-304 (369)
4 2bg9_E Acetylcholine receptor 100.0 2.3E-43 8E-48 332.7 3.9 189 1-203 110-306 (370)
5 2bg9_B Acetylcholine receptor 100.0 5.4E-43 1.9E-47 330.1 5.1 186 1-203 111-302 (370)
6 4aq5_B Acetylcholine receptor 100.0 2.1E-42 7.3E-47 336.6 3.2 207 1-218 135-347 (493)
7 4aq5_C Acetylcholine receptor 100.0 4.4E-42 1.5E-46 336.3 4.2 209 1-217 134-351 (522)
8 4aq5_E Acetylcholine receptor 100.0 1.8E-42 6.2E-47 336.6 1.2 207 1-217 110-324 (488)
9 3tlw_A GLR4197 protein, GLIC; 100.0 6.1E-42 2.1E-46 317.3 4.3 200 1-217 99-303 (321)
10 3rqw_A ELIC pentameric ligand 100.0 1.1E-41 3.6E-46 315.8 4.9 198 1-217 95-304 (322)
11 3rhw_A Avermectin-sensitive gl 100.0 9E-39 3.1E-43 299.0 9.1 186 2-201 114-305 (347)
12 2ksr_A Neuronal acetylcholine 99.9 3.3E-27 1.1E-31 196.3 -3.7 111 92-203 8-122 (164)
13 2lkg_A Acetylcholine receptor; 99.9 5.8E-28 2E-32 195.8 -12.8 110 90-200 19-140 (140)
14 2lly_A Neuronal acetylcholine 99.9 3E-24 1E-28 173.8 -2.7 96 107-203 2-101 (137)
15 3igq_A GLR4197 protein; plgic 99.9 1.8E-21 6.1E-26 168.1 11.0 101 1-115 95-197 (201)
16 2qc1_B Acetylcholine receptor 99.8 1.1E-20 3.8E-25 164.6 12.2 98 1-112 112-212 (212)
17 4aoe_A Acetylcholine-binding p 99.8 5.7E-21 1.9E-25 165.3 10.0 94 1-110 109-204 (205)
18 4aod_A Acetylcholine-binding p 99.8 5.1E-21 1.8E-25 165.6 9.4 95 1-110 109-204 (205)
19 1oed_A Acetylcholine receptor 99.8 7.4E-23 2.5E-27 179.1 -7.6 102 112-217 1-106 (227)
20 3sq6_A ACHBP, neuronal acetylc 99.8 7E-20 2.4E-24 158.5 11.2 94 1-111 108-203 (204)
21 1oed_B Acetylcholine receptor 99.8 1.1E-22 3.9E-27 180.3 -7.3 102 112-217 1-106 (250)
22 1oed_E Acetylcholine receptor 99.8 2.6E-22 8.8E-27 179.0 -6.5 102 112-217 1-107 (260)
23 2wn9_A Soluble acetylcholine r 99.8 1.5E-19 5E-24 159.2 11.0 103 1-121 119-226 (228)
24 1oed_C Acetylcholine receptor 99.8 2.5E-22 8.4E-27 179.2 -7.3 103 112-218 1-107 (260)
25 3a5c_G V-type ATP synthase sub 99.8 1.6E-20 5.4E-25 164.0 3.0 74 206-279 130-203 (223)
26 3aon_A V-type sodium ATPase su 99.8 1.7E-20 5.7E-25 163.4 0.8 73 207-279 144-216 (217)
27 1uw6_A Acetylcholine-binding p 99.8 9.9E-19 3.4E-23 152.1 11.9 99 1-117 107-211 (211)
28 4afh_A ACHBP; acetylcholine-bi 99.8 4.8E-19 1.6E-23 155.9 9.1 100 1-119 120-221 (230)
29 2bj0_A Acetylcholine-binding p 99.8 4.2E-18 1.4E-22 147.3 11.8 95 1-111 105-203 (203)
30 1vry_A Glycine receptor alpha- 99.0 1.3E-11 4.4E-16 88.3 -2.6 59 141-201 2-63 (76)
31 1mot_A Glycine receptor alpha- 91.3 0.0019 6.5E-08 36.8 -5.5 27 141-167 2-28 (28)
32 3oja_B Anopheles plasmodium-re 42.1 74 0.0025 30.4 8.2 27 247-273 506-532 (597)
33 2axc_A Colicin E7; translocati 40.2 20 0.00067 30.9 3.2 23 283-305 236-258 (264)
34 3he5_A Synzip1; heterodimeric 31.4 43 0.0015 20.2 2.8 44 217-261 6-49 (49)
35 1f5n_A Interferon-induced guan 27.2 1.3E+02 0.0044 29.3 7.1 51 253-303 511-564 (592)
36 1wle_A Seryl-tRNA synthetase; 23.9 3.4E+02 0.012 25.6 9.2 35 240-276 69-103 (501)
37 1gmj_A ATPase inhibitor; coile 23.1 2E+02 0.0069 20.2 5.7 9 288-296 59-67 (84)
38 3pjs_K KCSA, voltage-gated pot 21.6 1E+02 0.0035 24.3 4.4 18 247-264 142-159 (166)
39 2akf_A Coronin-1A; coiled coil 20.8 43 0.0015 18.6 1.3 22 219-240 4-25 (32)
No 1
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=100.00 E-value=1.5e-44 Score=348.85 Aligned_cols=200 Identities=33% Similarity=0.572 Sum_probs=175.5
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
++||+|.|.+|+++ ++|+||+++||||+ +|+++|+|| +|+..++.+.+ ..+.+++++|..++||
T Consensus 135 ~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~----~y~~~~v~l~~----------~~~~~~l~~~~~~~eW 200 (461)
T 4aq5_A 135 DYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIW----TYDGTKVSISP----------ESDRPDLSTFMESGEW 200 (461)
T ss_dssp CSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEES----SCCTTTEEEEC----------CCCCCSGGGCCTTCSS
T ss_pred cCCccEEEeccccccccccccccCCCCccCccCeEEecc----ccCCceEEEEe----------ccccccHHhhhccCce
Confidence 48999999999999 99999999999999 999999999 77665555543 3456778889999999
Q ss_pred EEeeeeEEEEEEeccCCCC-CcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHH
Q psy12586 79 DLLSYSSVKNVVNYSCCVE-PYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVF 157 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~-~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~ 157 (309)
++.+.+..++...|.||++ +|++++++|.++|+++||++++++||+++++++|++||+|+++++|+++|+|++|++++|
T Consensus 201 ~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~eRv~LgiT~LLt~tvf 280 (461)
T 4aq5_A 201 VMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVF 280 (461)
T ss_dssp EEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTHHHHHHHHHHHH
T ss_pred EEeeeeeEEEEEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccccceeehhHHHHHHHHHH
Confidence 9999999888888999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCc-c---ccchhhhhhhHHHHHHHHHhhcccceeeeCCccccccccccccccccc
Q psy12586 158 LMTIRETLPPTE-N---ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLAS 218 (309)
Q Consensus 158 l~~l~~~lP~~s-~---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~~~~~~l~~~l~~la~ 218 (309)
+..+++.+|++| + ||+|+++||+++++| ++.+++|+|+++|++.. +++|.|++++.-
T Consensus 281 l~~v~~~LP~tS~~vplI~~y~~~~m~~v~~s-ll~tv~Vl~l~~r~~~~---~~mp~w~r~~~l 341 (461)
T 4aq5_A 281 LLVIVELIPSTSSAVPLIGKYMLFTMIFVISS-IIVTVVVINTHHRSPST---HTMPQWVRKIFI 341 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH-HHHHHHHHHHHHCCTTT---C-----------
T ss_pred HHHHHhhcCcccCCcCHHHHHHHHHHHHHHHH-HHHHhhheeeeccCCCC---CCCCHHHHHHHH
Confidence 999999999998 4 999999999999998 89999999999998765 789999998653
No 2
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=2.4e-43 Score=332.57 Aligned_cols=188 Identities=32% Similarity=0.563 Sum_probs=173.5
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+||+++||||+ +|+++|||| +|+..++.+.+. .+.++++++..++||
T Consensus 111 ~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~----~y~~~~v~l~~~----------~~~~~~~~~~~~~ew 176 (370)
T 2bg9_A 111 DYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIW----TYDGTKVSISPE----------SDRPDLSTFMESGEW 176 (370)
T ss_dssp CSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEES----SCCTTTEEEECC----------CCCCSTTSCCTTCSS
T ss_pred ECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEe----cccCcEEEEEec----------CCCcccccccccceE
Confidence 48999999999999 99999999999999 999999999 776666665543 345677888899999
Q ss_pred EEeeeeEEEEEEeccCCC-CCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHH
Q psy12586 79 DLLSYSSVKNVVNYSCCV-EPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVF 157 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~-~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~ 157 (309)
++.+.+..++...|.||+ ++|++++++|.++|+++||++++++||+++++++|++||+|+++|+|+++|+|++|+++++
T Consensus 177 ~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~~~Rv~lgit~lLt~t~~ 256 (370)
T 2bg9_A 177 VMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVF 256 (370)
T ss_dssp EEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred EEEcceEEEEEEecCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCCCCeEEEeHHHHHHHHHH
Confidence 999999988888899887 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcc----ccchhhhhhhHHHHHHHHHhhcccceeeeCCcc
Q psy12586 158 LMTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQ 203 (309)
Q Consensus 158 l~~l~~~lP~~s~----i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~ 203 (309)
+..+++.+|++|+ ||+|+++|++++++| ++.+++|+|+++|++..
T Consensus 257 ~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~s-l~~~~~v~~~~~r~~~~ 305 (370)
T 2bg9_A 257 LLVIVELIPSTSSAVPLIGKYMLFTMIFVISS-IIVTVVVINTHHRSPST 305 (370)
T ss_dssp HHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH-HHHHHHHHHHHHCSTTT
T ss_pred HHHHHhhCCCCcCCCCHHHHHHHHHHHHHHHH-HHHHHHHHhhhccCccc
Confidence 9999999999997 999999999999998 78889999999998644
No 3
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=2.8e-43 Score=331.92 Aligned_cols=185 Identities=29% Similarity=0.446 Sum_probs=171.6
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+||+++||||+ +|+++|||| +|+.+++.+.| ..+++++..++||
T Consensus 113 ~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~----~y~~~~i~l~~-------------~~~~~~~~~~~ew 175 (369)
T 2bg9_C 113 RPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTAL----NYNANEISMDL-------------IIDPEAFTENGEW 175 (369)
T ss_dssp CSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEES----SCCTTTCEEEC-------------CCGGGSCCTTSSE
T ss_pred ECCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEe----cccCceEEEEE-------------ecccccceeCCEE
Confidence 48999999999999 99999999999999 999999999 87777666655 2345678889999
Q ss_pred EEeeeeEEEEEEe-ccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHH
Q psy12586 79 DLLSYSSVKNVVN-YSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVF 157 (309)
Q Consensus 79 ~l~~~~~~~~~~~-~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~ 157 (309)
++.+.+..++... |.||+++|+++.++|.++|+++||++++++||+++++++|++||+|+++|+|+++|+|++|+++++
T Consensus 176 ~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~~~Rv~lgit~lLt~t~~ 255 (369)
T 2bg9_C 176 EIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVF 255 (369)
T ss_dssp EEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EEeeeeEEEEEEecCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCCCCCeEEEEhHHHHHHHHH
Confidence 9999998888877 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcc----ccchhhhhhhHHHHHHHHHhhcccceeeeCCcc
Q psy12586 158 LMTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQ 203 (309)
Q Consensus 158 l~~l~~~lP~~s~----i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~ 203 (309)
+..+++.+|++|| ||+|+.+||+++++| ++.+++|+|+++|++..
T Consensus 256 ~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~s-ll~~v~v~~~~~r~~~~ 304 (369)
T 2bg9_C 256 LLLTSQRLPETALAVPLIGKYLMFIMSLVTGV-VVNCGIVLNFHFRTPST 304 (369)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHCSTTT
T ss_pred HHHHHHhCCCCccCccHHHHHHHHHHHHHHHH-HHHHhheeeeeccCCCC
Confidence 9999999999997 999999999999998 78899999999998754
No 4
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=2.3e-43 Score=332.67 Aligned_cols=189 Identities=24% Similarity=0.371 Sum_probs=173.7
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+||+++||||+ +|+++|||| +|+.+++.+.|..+. .+++++|..++||
T Consensus 110 ~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~----~y~~~~i~l~~~~~~---------~~~~~~~~~~~eW 176 (370)
T 2bg9_E 110 YNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQ----TYNAHEVNLQLSAEE---------GIDPEDFTENGEW 176 (370)
T ss_dssp CSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEES----SSCTTSCCEECCCSC---------CCGGGSCCTTSSE
T ss_pred ECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEee----ccccceeEEEecCCC---------cccHhhcccccEE
Confidence 48999999999999 99999999999999 999999999 887777777665331 4567788899999
Q ss_pred EEeeeeEEEEEEe-ccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCC-CCceEEEEehhHHHHHH
Q psy12586 79 DLLSYSSVKNVVN-YSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSE-SGEKVTLGISALLSMTV 156 (309)
Q Consensus 79 ~l~~~~~~~~~~~-~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~-~~~Ri~l~it~lLt~~~ 156 (309)
++.+.+..++... |.||+++|++++++|.++|+++||++++++||+++++++|++||+|++ +|+|+++|+|++|++++
T Consensus 177 ~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~ 256 (370)
T 2bg9_E 177 TIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTI 256 (370)
T ss_dssp EEEECCCCEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHH
T ss_pred EEecceeEEEEEecccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHH
Confidence 9999988777766 889999999999999999999999999999999999999999999999 69999999999999999
Q ss_pred HHHHHhhcCCCCcc----ccchhhhhhhHHHHHHHHHhhcccceeeeCCcc
Q psy12586 157 FLMTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQ 203 (309)
Q Consensus 157 ~l~~l~~~lP~~s~----i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~ 203 (309)
++..+++.+|++|| ||+|+++||++++++ ++.+++|+|+++|++..
T Consensus 257 ~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~s-ll~~v~v~~~~~r~~~~ 306 (370)
T 2bg9_E 257 FLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVI-VTNCVIVLNVSLRTPNT 306 (370)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHH-HHHHHHHHHHTTCSTTT
T ss_pred HHHHHHHhCCCccCCCChHHHHHHHHHHHHHHH-HHHHhhheeeeccCCCC
Confidence 99999999999997 999999999999998 78899999999998654
No 5
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=5.4e-43 Score=330.11 Aligned_cols=186 Identities=26% Similarity=0.458 Sum_probs=171.2
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+||+++||||+ +|+++|||| +|+.+++.+.|. ..+.++++++..++||
T Consensus 111 ~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~----~y~~~~i~l~~~---------~~~~~~~~~~~~~~eW 177 (370)
T 2bg9_B 111 QHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSY----TYDTSEVILQHA---------LDAMINQDAFTENGQW 177 (370)
T ss_dssp ETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEES----SCCBTSCEEECS---------CCCCCSTTSCCTTCSS
T ss_pred eCCceEEEEecceEEEEccCcccCCCCCceeeeEEEEec----cccccEEEEEec---------cCCccccccccccceE
Confidence 37999999999999 99999999999999 999999999 887777777662 2335667888999999
Q ss_pred EEeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHHH
Q psy12586 79 DLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFL 158 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~l 158 (309)
++.+.+..++ |.||+++|+++.++|.++|+++||++++++||+++++++|++||+|+++|+|+++|+|++|++++++
T Consensus 178 ~l~~~~~~~~---y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~~~~Rv~lgit~lLt~t~~~ 254 (370)
T 2bg9_B 178 SIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFL 254 (370)
T ss_dssp EECCCCEEEC---CCTTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEeccceEEe---ecCCCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCCCCceEEEEehHHHHHHHHH
Confidence 9999887665 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcc----ccchhhhhhhHHHHHHHHHhhcccceeeeCCcc
Q psy12586 159 MTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQ 203 (309)
Q Consensus 159 ~~l~~~lP~~s~----i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~ 203 (309)
..+++.+|++|+ ||+|+.+||++++++ ++.+++|+|+++|++..
T Consensus 255 ~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~s-ll~~v~v~~~~~r~~~~ 302 (370)
T 2bg9_B 255 LLLADKVPETSLSVPIIISYLMFIMILVAFS-VILSVVVLNLHHRSPNT 302 (370)
T ss_dssp HHHHHHHHHHHTTSCCCSHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTT
T ss_pred HHHHhhCCCccccccHHHHHHHHHHHHHHHH-HHHHHHhhhhhccCCCC
Confidence 999999999997 999999999999998 78899999999998654
No 6
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=100.00 E-value=2.1e-42 Score=336.56 Aligned_cols=207 Identities=25% Similarity=0.416 Sum_probs=174.1
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+||+++||||+ +|+++|+|| +|+..++.+.|..+..-.-......+++++|..+|||
T Consensus 135 ~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~----~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW 210 (493)
T 4aq5_B 135 QHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSY----TYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQW 210 (493)
T ss_dssp CTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECS----SCCBTSCEEECCCCC---------CCSGGGCCTTCSS
T ss_pred ecCCCEEEeeeeeeeecccccccCCCccceeEEEEEeee----cCccccEEEEeccCCCCccceecccccHHHhccccce
Confidence 48999999999999 99999999999999 999999999 9999999988865432100012345778889999999
Q ss_pred EEeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHHH
Q psy12586 79 DLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFL 158 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~l 158 (309)
++.+.+..++...|+| .|++++++|.++|+++||++++++||+++++++|++||+|+++|+|+++|+|++|++++|+
T Consensus 211 ~l~~~~~~~~~~~~~~---~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s~eRvsLgiT~LLt~tvfl 287 (493)
T 4aq5_B 211 SIEHKPSRKNWRSDDP---SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFL 287 (493)
T ss_dssp BCCCCCCEECCCTTSS---SBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTCGGGGTHHHHHHHHHHHHH
T ss_pred eeeeeeEEEEeecCCC---CccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCCCceEEehHHHHHHHHHHH
Confidence 9999888776655553 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcc----ccchhhhhhhHHHHHHHHHhhcccceeeeCCccccccccccccccccc
Q psy12586 159 MTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLAS 218 (309)
Q Consensus 159 ~~l~~~lP~~s~----i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~~~~~~l~~~l~~la~ 218 (309)
..+++.+|++|+ ||+|+++||++++++ ++.+++|+|+++|++.. +++|.|++.+.-
T Consensus 288 ~~v~~~LP~tS~~vPlI~~y~~~~m~~v~ls-ll~tv~Vl~l~~r~~~~---~~mp~w~r~~~l 347 (493)
T 4aq5_B 288 LLLADKVPETSLSVPIIISYLMFIMILVAFS-VILSVVVLNLHHRSPNT---HTMPNWIRQIFI 347 (493)
T ss_dssp HHHHHHTTTTTTSSCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTT---C-----------
T ss_pred HHHHhcCCccccCCCchHhHHHHHHHHHHHH-HHHHHhheeeeccCCCC---CcCCHHHHHHHH
Confidence 999999999998 999999999999998 89999999999998765 789999998653
No 7
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=100.00 E-value=4.4e-42 Score=336.30 Aligned_cols=209 Identities=27% Similarity=0.393 Sum_probs=171.9
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeE--EEecCCCCCccceeecC
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLD--LLKEREEGDTTNYQVNG 76 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~--l~~~~~~~~~~~~~~~~ 76 (309)
.+||+|.|.+|+++ ++|+||+++||||+ +|+|+|+|| +|+..++.+.|..+.... .......++.++|..++
T Consensus 134 ~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~----~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~g 209 (522)
T 4aq5_C 134 RPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTAL----NYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENG 209 (522)
T ss_dssp CSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEET----TCCTTTCCEEC---------------CCSTTSCCTTC
T ss_pred eCCccEEEEcccccccccccccCcCCCcCceEeEEEecc----cccCceeEEEeccCcccccCccceeeeccHHHceecc
Confidence 48999999999999 99999999999999 999999999 998888888876432100 00001135677899999
Q ss_pred eEEEeeeeEEEEEEecc-CCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHH
Q psy12586 77 EFDLLSYSSVKNVVNYS-CCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMT 155 (309)
Q Consensus 77 eW~l~~~~~~~~~~~~~-~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~ 155 (309)
||++.+.+..++...+. |+++.|++++++|.++|+++||++++++||+++++++|++||||+++|+|+++|+|++|+++
T Consensus 210 EW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d~~eRisLgIT~LLt~t 289 (522)
T 4aq5_C 210 EWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQA 289 (522)
T ss_dssp SEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHH
T ss_pred eEEEeeeEEEEEeeeccccCCCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCCcCceEEehHHHHHHHH
Confidence 99999988777665433 44557999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCcc----ccchhhhhhhHHHHHHHHHhhcccceeeeCCcccccccccccccccc
Q psy12586 156 VFLMTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLA 217 (309)
Q Consensus 156 ~~l~~l~~~lP~~s~----i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~~~~~~l~~~l~~la 217 (309)
+|+..+++.+|++|+ ||+|+++||++++++ ++.+++|+|+++|++.. +++|+|++.+.
T Consensus 290 vfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~lS-ll~tviVlnl~~r~~~~---~~mp~wvr~~f 351 (522)
T 4aq5_C 290 VFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGV-VVNCGIVLNFHFRTPST---HVLSTRVKQIF 351 (522)
T ss_dssp HHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHH-HHHHHHHHHHHSCCSSC---C----------
T ss_pred HHHHHHHhcCCcccCCccHHHHHHHHHHHHHHHH-HHHHheEEEEEccCCCC---CCCChHHHHHH
Confidence 999999999999997 999999999999998 89999999999998765 78999999865
No 8
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=100.00 E-value=1.8e-42 Score=336.64 Aligned_cols=207 Identities=24% Similarity=0.355 Sum_probs=173.9
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+||+++||||+ +|+|+|+|| +|+..++.+.|..++...+ ....++.++|..++||
T Consensus 110 ~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~----~y~~~~v~l~~~~~~~~~~--~~~~~d~~~~~~~~eW 183 (488)
T 4aq5_E 110 YNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQ----TYNAHEVNLQLSAEEGEVV--EWIHIDPEDFTENGEW 183 (488)
T ss_dssp CTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEES----SSCSSSCCEECCCSCC---------CGGGSCCTTCSE
T ss_pred eCCceEEEecceeEEeecccccccCCCcCceeeEEeeee----ccccceEEEEeccCCCcce--eeeeccHHHccccceE
Confidence 48999999999999 99999999999999 999999999 9988888888765432111 1123566788999999
Q ss_pred EEeeeeEEEEEEeccC-CCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCC-CCceEEEEehhHHHHHH
Q psy12586 79 DLLSYSSVKNVVNYSC-CVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSE-SGEKVTLGISALLSMTV 156 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~-~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~-~~~Ri~l~it~lLt~~~ 156 (309)
++.+.+..++...+.| +++.|++++++|.++|+++||++++++||+++++++|++||+|++ +|+|+++|+|++|++++
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tv 263 (488)
T 4aq5_E 184 TIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTI 263 (488)
T ss_dssp EEEECCCEEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHH
T ss_pred EEEeeEEEEEEeeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHH
Confidence 9999887766554444 455799999999999999999999999999999999999999999 69999999999999999
Q ss_pred HHHHHhhcCCCCcc----ccchhhhhhhHHHHHHHHHhhcccceeeeCCcccccccccccccccc
Q psy12586 157 FLMTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLA 217 (309)
Q Consensus 157 ~l~~l~~~lP~~s~----i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~~~~~~l~~~l~~la 217 (309)
|+..+++.+|++|+ ||+|+++||+++++| ++.+++|+|+++|++.. +++|+|++.+.
T Consensus 264 fl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~~S-ll~tv~Vlnl~~r~~~~---~~mp~w~r~~~ 324 (488)
T 4aq5_E 264 FLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVI-VTNCVIVLNVSLRTPNT---HSLSEKIKHLF 324 (488)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH-HHHHHHHHHHTTCSTTT---CC---------
T ss_pred HHHHHHhhCCccccCccHHHHHHHHHHHHHHHH-HHHHhhEEEEEccCCCC---CcCChhHhhhh
Confidence 99999999999997 999999999999998 79999999999998765 78999998765
No 9
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=6.1e-42 Score=317.27 Aligned_cols=200 Identities=17% Similarity=0.196 Sum_probs=177.8
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+||+++||||+ +|+++|+|| +|+.+++.+.|.+ +..+.+++..++||
T Consensus 99 ~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~----~y~~~~v~l~~~~----------~~~~~~~~~~~~ew 164 (321)
T 3tlw_A 99 SPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVR----SVDTRNIVLAVDL----------EKVGKNDDVFLTGW 164 (321)
T ss_dssp CTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEE----CCSSCCEEEEECG----------GGCEECTTCCBTTE
T ss_pred eCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecc----cCChhhEEEEEcC----------Ccccccccccccce
Confidence 48999999999999 99999999999999 999999999 8877777776652 22334566789999
Q ss_pred EEeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHHH
Q psy12586 79 DLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFL 158 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~l 158 (309)
++.+....++...|.||+++|+++.++|.++|+++||++++++||+++++++|++|| |+++|+|+++|+|++|++++++
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~~~~Rv~l~it~lL~~t~~~ 243 (321)
T 3tlw_A 165 DIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STSYEANVTLVVSTLIAHIAFN 243 (321)
T ss_dssp EEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeEeEEeeEEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCCCCCcEEEEhhHHHHHHHHH
Confidence 999999888888888899999999999999999999999999999999999999999 8888999999999999999999
Q ss_pred HHHhhcCCCCcc---ccchhhhhhhHHHHHHHHHhhcccceeeeCCcccccccccccccccc
Q psy12586 159 MTIRETLPPTEN---ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLA 217 (309)
Q Consensus 159 ~~l~~~lP~~s~---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~~~~~~l~~~l~~la 217 (309)
..+++.+|++|+ ||+|+++||++++++ ++.+++|.|++++++.. ...++|+|++.+.
T Consensus 244 ~~~~~~lP~~s~vp~i~~~~~~~~~~v~~s-ll~~v~v~~l~~~~~~~-~a~~~p~w~r~~f 303 (321)
T 3tlw_A 244 ILVETCLPKTPYMTYTGAIIFMIYLFYFVA-VIEVTVQHYLKVESQPA-RAASITRASRIAF 303 (321)
T ss_dssp HHHCCCCCCCSSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCHH-HHHHHHHHHHHHH
T ss_pred HHHHhhCCCccccHHHHHHHHHHHHHHHHH-HHHHHhhhhhhcCCccc-cccccChhheeee
Confidence 999999999999 999999999999998 78889999999887533 1236677776543
No 10
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=100.00 E-value=1.1e-41 Score=315.79 Aligned_cols=198 Identities=15% Similarity=0.189 Sum_probs=176.4
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+||+++||||+ +|+++|+|| +|+.+++.+.|.++. ...+.++ .++||
T Consensus 95 ~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~----~y~~~~v~l~~~~~~--------~~~~~~~--~~~ew 160 (322)
T 3rqw_A 95 FPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPF----SYNNQQLRFSDIQVY--------TENIDNE--EIDEW 160 (322)
T ss_dssp CTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEES----SCSSEEEEEEEEECC--------SCSSSSC--SSSSE
T ss_pred eCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEc----ccCcceEEEEECCCc--------ccccCCC--CCCce
Confidence 48999999999999 99999999999999 999999999 888888877764221 0122333 67999
Q ss_pred EE-eeeeEE------EEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhH
Q psy12586 79 DL-LSYSSV------KNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISAL 151 (309)
Q Consensus 79 ~l-~~~~~~------~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~l 151 (309)
++ .+.... ++...|.||+++|+++.++|.++|+++||++++++||+++++++|++||+| ++++|+++|+|++
T Consensus 161 ~l~~~~~~~~~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~~~~Rv~l~it~l 239 (322)
T 3rqw_A 161 WIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-SFSERLQTSFTLM 239 (322)
T ss_dssp EECCSCEECCEEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-SHHHHHHHHHHHH
T ss_pred EEEeeeEEEeeccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-CCCCcEEEEEehH
Confidence 99 988877 555667888999999999999999999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHHHHhhcCCCCcc---ccchhhhhhhHHHHHHHHHhhcccceeeeCCcccccccccccccccc
Q psy12586 152 LSMTVFLMTIRETLPPTEN---ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLA 217 (309)
Q Consensus 152 Lt~~~~l~~l~~~lP~~s~---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~~~~~~l~~~l~~la 217 (309)
|++++++..+++.+|++|| ||+|+++|+++++++ ++.+++|.|+++|++.. +++|+|++.+.
T Consensus 240 L~~~~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~s-ll~~~~v~~l~~~~~~~---~~~p~w~r~~f 304 (322)
T 3rqw_A 240 LTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAA-ILLIIFAHHRQANGVED---DLLIQRCRLAF 304 (322)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHH-HHHHHHHHHSSSSSSCC---CHHHHTCTTHH
T ss_pred HHHHHHHHHHhhhCCCccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCccc---cCcchHHHHHH
Confidence 9999999999999999999 999999999999998 78999999999988754 67899998753
No 11
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=9e-39 Score=299.01 Aligned_cols=186 Identities=19% Similarity=0.235 Sum_probs=162.2
Q ss_pred CCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeEE
Q psy12586 2 NTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFD 79 (309)
Q Consensus 2 ~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW~ 79 (309)
+||+|.|.+|+++ ++|+||+++||||. +|+++|||| +|+..++.+.|..+..++... +.....+||+
T Consensus 114 ~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~----~y~~~~v~l~~~~~~~~~~~~-------~~~~~~~e~~ 182 (347)
T 3rhw_A 114 NDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASY----AYTTKDIEYLWKEHSPLQLKV-------GLSSSLPSFQ 182 (347)
T ss_dssp TTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEES----SCCTTTEEEEECSSCSEEECT-------TSGGGCCSEE
T ss_pred CCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccC----cCChhhEEEEecCCCceeecC-------cceeEccceE
Confidence 7999999999999 99999999999999 999999999 998888888876554443211 0123468999
Q ss_pred EeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCC-CceEEEEehhHHHHHHHH
Q psy12586 80 LLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSES-GEKVTLGISALLSMTVFL 158 (309)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~-~~Ri~l~it~lLt~~~~l 158 (309)
+.+.........+. ++.|+++.++|.++|+++||++++++||+++++++|++||+|+++ |+|+++|+|++|++++++
T Consensus 183 l~~~~~~~~~~~~~--~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~ 260 (347)
T 3rhw_A 183 LTNTSTTYCTSVTN--TGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQS 260 (347)
T ss_dssp EEEEEEEECCEECS--SCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EeeEEeeEeeeeec--ccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHH
Confidence 99987766555443 688999999999999999999999999999999999999999998 899999999999999999
Q ss_pred HHHhhcCCCCcc---ccchhhhhhhHHHHHHHHHhhcccceeeeCC
Q psy12586 159 MTIRETLPPTEN---ISEYVLVSSDHFRVKYIIVADELLPTRYRGR 201 (309)
Q Consensus 159 ~~l~~~lP~~s~---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~ 201 (309)
..+++.+|++|| ||+|+++|++++++| ++.+++|.+++++++
T Consensus 261 ~~~~~~lP~~S~v~~id~~~~~~~~~v~~s-lle~~~v~~l~~~~~ 305 (347)
T 3rhw_A 261 AGINSQLPPVSYIKAIDVWIGACMTFIFCA-LLEFALVNHIANAGT 305 (347)
T ss_dssp HHHHHTSCCCSSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSS
T ss_pred HHHHhhCCCccceeHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCc
Confidence 999999999999 999999999999997 566666666666653
No 12
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.91 E-value=3.3e-27 Score=196.30 Aligned_cols=111 Identities=36% Similarity=0.685 Sum_probs=90.9
Q ss_pred ccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHHHHHHhhcCCCCc-c
Q psy12586 92 YSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTE-N 170 (309)
Q Consensus 92 ~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~l~~l~~~lP~~s-~ 170 (309)
..+|+++|++++++|.+||+++||++++++||+++++++|++||+|+|+|||+++|+|++|++++++..+++.+|++| +
T Consensus 8 ~~~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvslgit~LLs~tvfl~~v~~~lP~tS~~ 87 (164)
T 2ksr_A 8 STSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPTSLD 87 (164)
T ss_dssp -----------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCSHHHHHHHHHHHHHHHHHHHHHHTTCCSSCTT
T ss_pred CCCCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCCCCeEEEeeehHHHHHHHHHHHHHHCCCCccc
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred ---ccchhhhhhhHHHHHHHHHhhcccceeeeCCcc
Q psy12586 171 ---ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQ 203 (309)
Q Consensus 171 ---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~ 203 (309)
+|+|+.+|++++++| ++.+++|+|+++|++..
T Consensus 88 vPlI~~y~~~~m~~v~~s-ll~tv~Vl~~~~r~~~~ 122 (164)
T 2ksr_A 88 VPLVGKYLMFTMVLVTFS-IVTSVCVLNVHHRSPTT 122 (164)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTHHHHHHHHTSSCCC
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHhhhhhccCCCC
Confidence 999999999999998 78999999999998765
No 13
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.90 E-value=5.8e-28 Score=195.81 Aligned_cols=110 Identities=31% Similarity=0.469 Sum_probs=102.0
Q ss_pred EeccCCCCCc--------ceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHHHHHH
Q psy12586 90 VNYSCCVEPY--------PDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTI 161 (309)
Q Consensus 90 ~~~~~~~~~y--------~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~l~~l 161 (309)
+.|+||+++| +++.+.|.+||+++||++++++||+++++++|++||+|+|+|||+++|+|++|++++++..+
T Consensus 19 ~~y~cC~~~y~~~~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvslgit~lLs~tvfl~~v 98 (140)
T 2lkg_A 19 VFDKICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTESKSVLKSLTEKLKKI 98 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSSSHHHHHHHHHHHHHHHHHHGG
T ss_pred EEecCCCCCccccCCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCCCCEEEEeeehHHHHHHHHHHH
Confidence 3456666554 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCc-c---ccchhhhhhhHHHHHHHHHhhcccceeeeC
Q psy12586 162 RETLPPTE-N---ISEYVLVSSDHFRVKYIIVADELLPTRYRG 200 (309)
Q Consensus 162 ~~~lP~~s-~---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~ 200 (309)
++.+|++| + ||+|+.+|++++++| ++.+++|+|+++|+
T Consensus 99 ~~~lP~tS~~vPlI~~y~~~~~~~v~~s-ll~tv~Vln~~~r~ 140 (140)
T 2lkg_A 99 VELIPSTSSAVPLIGKYMLFTKEFVESS-IKITEEVINTHHRS 140 (140)
T ss_dssp GGTCTTTGGGHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHC
T ss_pred HHhCCCccccccHHHHHHHHHHHHHHHH-HHHHHhheeeeccC
Confidence 99999999 5 999999999999998 78999999998874
No 14
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.87 E-value=3e-24 Score=173.81 Aligned_cols=96 Identities=45% Similarity=0.806 Sum_probs=90.6
Q ss_pred EEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHHHHHHhhcCCCCc-c---ccchhhhhhhHH
Q psy12586 107 SLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTE-N---ISEYVLVSSDHF 182 (309)
Q Consensus 107 ~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~l~~l~~~lP~~s-~---i~~y~~~~~~~v 182 (309)
++||+++||++++++||+++++++|++||+|+|+|||+++|+|++|++++++..+++.+|++| + +|+|+.+|++++
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~v 81 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIFV 81 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCCCCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999 5 999999999999
Q ss_pred HHHHHHHhhcccceeeeCCcc
Q psy12586 183 RVKYIIVADELLPTRYRGRAQ 203 (309)
Q Consensus 183 ~~s~ii~~~~v~n~~~r~~~~ 203 (309)
++| ++.+++|+|+++|++..
T Consensus 82 ~~s-l~~tv~V~~~~~r~~~~ 101 (137)
T 2lly_A 82 TLS-IVITVFVLNVHHRSPET 101 (137)
T ss_dssp HHH-HHHHHHHHHCCSSCSSC
T ss_pred HHH-hhhhhhhhhHHhcCCcc
Confidence 998 78999999999998754
No 15
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.85 E-value=1.8e-21 Score=168.11 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=74.3
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+||+++||||. +|+|+|+|| +|+..++.+.|. .+.++++++..++||
T Consensus 95 ~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~----~y~~~~v~l~~~----------~~~~~~~~~~~~~ew 160 (201)
T 3igq_A 95 SPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVR----SVDTRNIVLAVD----------LEKVGKNDDVFLTGW 160 (201)
T ss_dssp CTTCEEEEEEEEEEEEECCCC------CEEEEEEEEEEC----CCSSCCEEEEEC----------GGGCEESCSEEETTE
T ss_pred eCCCcEEEecceeEEEecCcccccCCCCccEeeEEEecc----CCCceEEEEEec----------CCccccccCcccCCe
Confidence 48999999999999 99999999999999 999999999 887777777664 234556788999999
Q ss_pred EEeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceE
Q psy12586 79 DLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFY 115 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y 115 (309)
++.+.+..++...|.||+++|+.++|+|.+||+.|.+
T Consensus 161 ~l~~~~~~~~~~~y~cc~~~y~~i~f~i~irR~~~~~ 197 (201)
T 3igq_A 161 DIESFTAVVKPANFALEDRLESKLDYQLRISRQGGHH 197 (201)
T ss_dssp EEEEEEEEEEC--------CCCEEEEEEEEEEC----
T ss_pred EEEeeEEEEEEEEeCCCCCccCeEEEEEEEEECCCCC
Confidence 9999999999999999999999999999999999875
No 16
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=99.84 E-value=1.1e-20 Score=164.58 Aligned_cols=98 Identities=27% Similarity=0.344 Sum_probs=88.0
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+||+++||||. +|+|+|||| +|+..++.+.|. .+.+++.++..++||
T Consensus 112 ~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~----~y~~~~v~l~~~----------~~~~~~~~~~~~~ew 177 (212)
T 2qc1_B 112 DYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTR----TYDGSAVAINPE----------SDQPDLSNFMESGEW 177 (212)
T ss_dssp ETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEES----SCCTTTEEEEES----------CSSCBCTTCCCCSSE
T ss_pred ECCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcc----cccCceEEEEec----------ccccchhhCccCCCE
Confidence 37999999999999 99999999999999 999999999 876666666554 345677889999999
Q ss_pred EEeeeeEEEEEEeccCCC-CCcceEEEEEEEEeec
Q psy12586 79 DLLSYSSVKNVVNYSCCV-EPYPDITYYISLRRRP 112 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~-~~y~~l~~~~~l~R~~ 112 (309)
++.+....++...|.||+ |+|++++++|.|+|+|
T Consensus 178 ~l~~~~~~~~~~~y~~~~~~~y~~i~~~~~l~R~p 212 (212)
T 2qc1_B 178 VIKEARGWKHWVFYSCCPTTPYLDITYHFVMQRLP 212 (212)
T ss_dssp EEEEEEEEEEEEEETTCSSCCEEEEEEEEEEEECC
T ss_pred EEEEeEEEEEEEecCCCCCCCeeEEEEEEEEEECc
Confidence 999999999999999998 8999999999999997
No 17
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.84 E-value=5.7e-21 Score=165.25 Aligned_cols=94 Identities=17% Similarity=0.250 Sum_probs=83.9
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
++||+|.|.+|+.+ ++|+|| ..||||. +|+|+|||| +|...++.+ . ..+.+++++|..|+||
T Consensus 109 ~~~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw----~y~~~~l~l----------~-~~~~~dl~~~~~n~EW 172 (205)
T 4aoe_A 109 YKDGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPW----TYDVRDLVL----------D-ESQQVDLTTYAGGERF 172 (205)
T ss_dssp ETTSEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECS----SCCTTTEEE----------E-CSSSCBCTTSCTTCSE
T ss_pred eCCcEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECc----cCChheEEE----------e-cCcccchhccccCCcE
Confidence 37999999999999 999999 8999999 999999999 765555444 3 2345678899999999
Q ss_pred EEeeeeEEEEEEeccCCCCCcceEEEEEEEEe
Q psy12586 79 DLLSYSSVKNVVNYSCCVEPYPDITYYISLRR 110 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R 110 (309)
++.+.++.++...|+||+++|+.++|+|.|||
T Consensus 173 ~l~~~~~~r~~~~Y~CC~~~y~dit~~i~lrR 204 (205)
T 4aoe_A 173 QLIEAKQKVNKKTYPCCPQSFEDIELRVTFKK 204 (205)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred EEEeeEEEEEEEEeCCCCCCcceEEEEEEEEE
Confidence 99999999999999999999999999999999
No 18
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.84 E-value=5.1e-21 Score=165.65 Aligned_cols=95 Identities=23% Similarity=0.350 Sum_probs=84.8
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccceeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeEE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEIKLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFD 79 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW~ 79 (309)
.+||+|.|.+|+.+ ++|+||+.+||||++|+|+|||| +|+..++.+.+. ..+++++|..|+||+
T Consensus 109 ~~~G~V~~~~~~~~~s~C~~d~~~fPfDQ~C~l~fgSw----~y~~~~i~l~~~-----------~~~dl~~~~~n~EW~ 173 (205)
T 4aod_A 109 SQDGTVTYVPQLKVRLSCPLADLKLETGVTCSLKSGSW----THSTQELTLEVN-----------AKVDLGDYASDTRFQ 173 (205)
T ss_dssp ETTSEEEECCEEEEEEECCCTTSSSSSCEEEEEEEEES----SCCTTTEEEECS-----------SSCBCTTSCTTCSSE
T ss_pred ecCCEEEEeccEEEEEEecCccccCCCCcEEEEEEECc----cccccEEEEEEC-----------CCcccccccccCCEE
Confidence 37999999999999 99999999999998999999999 776665555432 346778899999999
Q ss_pred EeeeeEEEEEEeccCCCCCcceEEEEEEEEe
Q psy12586 80 LLSYSSVKNVVNYSCCVEPYPDITYYISLRR 110 (309)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R 110 (309)
+.+.+..++...|+||+++|+.++|+|.|||
T Consensus 174 l~~~~~~~~~~~Y~cc~~~Y~~it~~~~lrR 204 (205)
T 4aod_A 174 LLNATQQVNRKQYPCCPETYEDTTLSFTFRK 204 (205)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred EEeeEEEEEEEEeCCCCCCcceEEEEEEEEC
Confidence 9999999999999999999999999999976
No 19
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.81 E-value=7.4e-23 Score=179.07 Aligned_cols=102 Identities=41% Similarity=0.744 Sum_probs=85.3
Q ss_pred cceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHHHHHHhhcCCCCc-c---ccchhhhhhhHHHHHHH
Q psy12586 112 PMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTE-N---ISEYVLVSSDHFRVKYI 187 (309)
Q Consensus 112 ~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~l~~l~~~lP~~s-~---i~~y~~~~~~~v~~s~i 187 (309)
|+||++++++||+++++++|++||+|+++|+|+++|+|++|++++|+..+++.+|++| + ||+|+.+||+++++| +
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~sgerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~s-l 79 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISS-I 79 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHH-H
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCCCCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHH-H
Confidence 6899999999999999999999999999999999999999999999999999999998 5 999999999999998 7
Q ss_pred HHhhcccceeeeCCcccccccccccccccc
Q psy12586 188 IVADELLPTRYRGRAQSQEFTLPEQVRPLA 217 (309)
Q Consensus 188 i~~~~v~n~~~r~~~~~~~~~l~~~l~~la 217 (309)
+.+++|+|+++|++.. +++|.|++.+.
T Consensus 80 ~~tv~vln~~~r~~~~---~~mp~wvr~~~ 106 (227)
T 1oed_A 80 IITVVVINTHHRSPST---HTMPQWVRKIF 106 (227)
T ss_dssp HHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHhhhccCCCC---CCcchHHHHHH
Confidence 9999999999998765 68999998764
No 20
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=99.81 E-value=7e-20 Score=158.53 Aligned_cols=94 Identities=21% Similarity=0.369 Sum_probs=84.8
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+||+ +||||. +|+|+|||| +|+..++.+.+. .++++++..++||
T Consensus 108 ~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~----~y~~~~v~l~~~------------~~~~~~~~~~~eW 170 (204)
T 3sq6_A 108 NSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSW----THHSRELDLQMQ------------EADISGYIPYSRF 170 (204)
T ss_dssp ETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEES----SCCTTTEEEECC------------CCCCTTSCSSSSE
T ss_pred EeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEee----cccCeEEEEEec------------cCCHHHcccCCCE
Confidence 37999999999999 9999999 999999 999999999 877777666532 2456788899999
Q ss_pred EEeeeeEEEEEEeccCCCCCcceEEEEEEEEee
Q psy12586 79 DLLSYSSVKNVVNYSCCVEPYPDITYYISLRRR 111 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~ 111 (309)
++.+.+..++...|.||+++|+.++|+|.+||+
T Consensus 171 ~l~~~~~~~~~~~y~~c~~~y~~i~~~~~lrRr 203 (204)
T 3sq6_A 171 ELVGVTQKRSERFYECCKEPYPDVTFTVTFRKK 203 (204)
T ss_dssp EEEEEEEEEEEEECSSSSSEEEEEEEEEEEEEC
T ss_pred EEEEeEEEEEEEeeCCCCCCcceEEEEEEEEEC
Confidence 999999999999999999999999999999997
No 21
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.81 E-value=1.1e-22 Score=180.32 Aligned_cols=102 Identities=37% Similarity=0.717 Sum_probs=85.3
Q ss_pred cceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHHHHHHhhcCCCCc-c---ccchhhhhhhHHHHHHH
Q psy12586 112 PMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTE-N---ISEYVLVSSDHFRVKYI 187 (309)
Q Consensus 112 ~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~l~~l~~~lP~~s-~---i~~y~~~~~~~v~~s~i 187 (309)
|+||++++++||+++++++|++||+|+++|+|+++|+|++|++++|+..+++.+|++| + ||+|+.+||+++++| +
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~dsgerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~s-l 79 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFS-V 79 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHH-H
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCCCCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHH-H
Confidence 6799999999999999999999999999999999999999999999999999999998 5 999999999999998 8
Q ss_pred HHhhcccceeeeCCcccccccccccccccc
Q psy12586 188 IVADELLPTRYRGRAQSQEFTLPEQVRPLA 217 (309)
Q Consensus 188 i~~~~v~n~~~r~~~~~~~~~l~~~l~~la 217 (309)
+.+++|+|+++|++.. +++|.|++.+.
T Consensus 80 ~~tv~Vln~~~r~~~~---~~mp~wvr~~~ 106 (250)
T 1oed_B 80 ILSVVVLNLHHRSPNT---HTMPNWIRQIF 106 (250)
T ss_dssp HHHHHHHHHHHTC-----------------
T ss_pred HHHhheeeeeccCCCC---CCcchHHHHHH
Confidence 9999999999998765 68999998654
No 22
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.80 E-value=2.6e-22 Score=179.05 Aligned_cols=102 Identities=33% Similarity=0.661 Sum_probs=85.1
Q ss_pred cceEEEeeehhhHHHhhhheeeEEecCC-CCceEEEEehhHHHHHHHHHHHhhcCCCCc-c---ccchhhhhhhHHHHHH
Q psy12586 112 PMFYVFNLILPCILINCIALLVFYVPSE-SGEKVTLGISALLSMTVFLMTIRETLPPTE-N---ISEYVLVSSDHFRVKY 186 (309)
Q Consensus 112 ~~~y~~~~iiP~~li~~ls~i~Fwlp~~-~~~Ri~l~it~lLt~~~~l~~l~~~lP~~s-~---i~~y~~~~~~~v~~s~ 186 (309)
|+||++++++||+++++++|++||+|++ +|+|+++|+|++|++++|+..+++.+|++| + ||+|+.+||+++++|
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s- 79 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLI- 79 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHH-
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHH-
Confidence 6899999999999999999999999999 799999999999999999999999999998 5 999999999999998
Q ss_pred HHHhhcccceeeeCCcccccccccccccccc
Q psy12586 187 IIVADELLPTRYRGRAQSQEFTLPEQVRPLA 217 (309)
Q Consensus 187 ii~~~~v~n~~~r~~~~~~~~~l~~~l~~la 217 (309)
++.+++|+|+++|++.. +++|.|++.+.
T Consensus 80 l~~tv~vln~~~r~~~~---~~mp~w~r~~~ 107 (260)
T 1oed_E 80 VMNCVIVLNVSLRTPNT---HSLSEKIKHLF 107 (260)
T ss_dssp HHHHHHHHHHHHHC-----------------
T ss_pred HHHHhheeeeeccCCCC---CCcchHHHHHH
Confidence 79999999999998765 68999998755
No 23
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.80 E-value=1.5e-19 Score=159.18 Aligned_cols=103 Identities=20% Similarity=0.253 Sum_probs=84.6
Q ss_pred CCCceEEEEcceeE-EeeC---CCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeec
Q psy12586 1 MNTEHATVDLPIRS-SKKP---LPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVN 75 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~---mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~ 75 (309)
.+||+|.|.+|+++ ++|+ ||++ |+ +|+|+|||| +|+..++.+.|.. +.+++.++..+
T Consensus 119 ~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw----~y~~~~i~l~~~~----------~~~~~~~~~~~ 180 (228)
T 2wn9_A 119 THDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSW----VYSGFEIDLKTDT----------DQVDLSSYYAS 180 (228)
T ss_dssp ETEEEEEECCEEEEEEECCCTTTTST----TCEEEEEEEEES----SCCTTTEEEECSC----------SBCBCTTCCTT
T ss_pred eCCeEEEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEee----cccccEEEEEecC----------Cccchhhceec
Confidence 37999999999999 9999 9999 99 999999999 8877777776653 34567778899
Q ss_pred CeEEEeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeeh
Q psy12586 76 GEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLIL 121 (309)
Q Consensus 76 ~eW~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~ii 121 (309)
+||++.+.+..++...|.||+++|+.++++|.++|+++||++++++
T Consensus 181 ~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil 226 (228)
T 2wn9_A 181 SKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL 226 (228)
T ss_dssp CSEEEEEEEEEEEEECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred CCEEEEEEEEEEEEEeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence 9999999999999889999999999999999999999999999875
No 24
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.80 E-value=2.5e-22 Score=179.17 Aligned_cols=103 Identities=36% Similarity=0.650 Sum_probs=85.4
Q ss_pred cceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHHHHHHhhcCCCCc-c---ccchhhhhhhHHHHHHH
Q psy12586 112 PMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTE-N---ISEYVLVSSDHFRVKYI 187 (309)
Q Consensus 112 ~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~l~~l~~~lP~~s-~---i~~y~~~~~~~v~~s~i 187 (309)
|+||++++++||+++++++|++||+|+++|||+++|+|++|++++|+..+++.+|++| + ||+|+.+||+++++| +
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s-~ 79 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGV-I 79 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHH-H
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHH-H
Confidence 6799999999999999999999999999999999999999999999999999999998 4 999999999999998 8
Q ss_pred HHhhcccceeeeCCccccccccccccccccc
Q psy12586 188 IVADELLPTRYRGRAQSQEFTLPEQVRPLAS 218 (309)
Q Consensus 188 i~~~~v~n~~~r~~~~~~~~~l~~~l~~la~ 218 (309)
+.+++|+|+++|++.. +++|.|++.+.-
T Consensus 80 ~~tv~vl~~~~r~~~~---~~mp~w~r~~~l 107 (260)
T 1oed_C 80 VNCGIVLNFHFRTPST---HVLSTRVKQIFL 107 (260)
T ss_dssp HHHHHHHHHHHHC------------------
T ss_pred HHHHheeeeeccCCCC---CCccHHHHHHHH
Confidence 9999999999998755 689999987553
No 25
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=99.79 E-value=1.6e-20 Score=163.99 Aligned_cols=74 Identities=36% Similarity=0.531 Sum_probs=70.2
Q ss_pred ccccccccccccchhhhHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHH
Q psy12586 206 EFTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKRE 279 (309)
Q Consensus 206 ~~~l~~~l~~la~~e~~~~~L~~ei~~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~ 279 (309)
+..+.+.++++|+.++++.+|+++|++|+||||||||++||+++++|+||+.+|||+|||+|+|+|++|+++++
T Consensus 130 ~~~~l~~lvelA~le~~~~~L~~eIkkT~RRVNALE~viIP~le~tikyI~~~LdE~EReef~RlKkiK~k~~~ 203 (223)
T 3a5c_G 130 FRRYAEALIRVANTETRLKKIGEEIKKTTRRVNALEQVVIPGIRAQIRFIQQVLEQREREDTFRLKRIKGKIEA 203 (223)
T ss_dssp --CHHHHHHTHHHHHHHHHHHTHHHHHHTHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999999998876
No 26
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=99.78 E-value=1.7e-20 Score=163.37 Aligned_cols=73 Identities=40% Similarity=0.575 Sum_probs=56.1
Q ss_pred cccccccccccchhhhHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHH
Q psy12586 207 FTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKRE 279 (309)
Q Consensus 207 ~~l~~~l~~la~~e~~~~~L~~ei~~t~rRvnale~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~~~~ 279 (309)
..+.+.++++|+.|+++.+|+++|++|+||||||||++||+++++|+||+.+|||+|||+|+|+|++|+++++
T Consensus 144 ~~~l~~lvelA~le~~~~~L~~eIkkT~RRVNALE~viIP~~e~tikyI~~~LdE~EReef~RlKkiK~~~~~ 216 (217)
T 3aon_A 144 TQLLPKLLKLAEVEKTCQLMAEEIEKTRRRVNALEYMTIPQLEETIYYIKMKLEENERAEVTRLIKVKNMGTE 216 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4578889999999999999999999999999999999999999999999999999999999999999998764
No 27
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.78 E-value=9.9e-19 Score=152.08 Aligned_cols=99 Identities=21% Similarity=0.364 Sum_probs=86.5
Q ss_pred CCCceEEEEcceeE-EeeC---CCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceee-
Q psy12586 1 MNTEHATVDLPIRS-SKKP---LPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQV- 74 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~---mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~- 74 (309)
.+||+|.|.+|+++ ++|+ ||++ |+ +|+|+|||| +|+..++.+.|. .+.++++++..
T Consensus 107 ~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~----~y~~~~i~l~~~----------~~~~~~~~~~~~ 168 (211)
T 1uw6_A 107 VSDGEVLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSW----THHSREISVDPT----------TENSDDSEYFSQ 168 (211)
T ss_dssp ETTSEEEECCEEEEEEECCCTTTTSS----SCEEEEEEEEES----SCCTTTEEEEEC----------CCSSCTTTTSCT
T ss_pred eCCceEEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcc----cccCceEEEEec----------ccccchhhhccc
Confidence 37999999999999 9999 9999 99 999999999 877777666654 33566778888
Q ss_pred cCeEEEeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEE
Q psy12586 75 NGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVF 117 (309)
Q Consensus 75 ~~eW~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~ 117 (309)
++||++.+.+..++...|.||+|+|+.++++|.++|+++||++
T Consensus 169 ~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~yyil 211 (211)
T 1uw6_A 169 YSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211 (211)
T ss_dssp TSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEECCCC---
T ss_pred CCCEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEEccceeEC
Confidence 9999999999999999999999999999999999999999974
No 28
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.77 E-value=4.8e-19 Score=155.87 Aligned_cols=100 Identities=13% Similarity=0.190 Sum_probs=82.1
Q ss_pred CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586 1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF 78 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW 78 (309)
.+||+|.|.+|+++ ++|+| |||. +|+|+|||| +|+..++.+.|.++. ..+++ +|..+| |
T Consensus 120 ~~~G~V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S~----~y~~~~v~l~~~~~~--------~~~d~-~~~~n~-W 180 (230)
T 4afh_A 120 FSNGTVLWIPPAVLKVLCVS-----QDDVDSCHFQFGSW----VYSVDEVDIHFMDDK--------AEVLL-DFYQDS-L 180 (230)
T ss_dssp ETTSEEEECCEEEEEEEEEE-----ETTEEEEEEEEEES----SCCTTTEEEEEGGGC--------CSCBC-TTCCCC-C
T ss_pred EcCCEEEEecCEEEEEECCC-----CCCcccCCEeeccc----cccCceEEEEECCCC--------cccce-eeecCc-E
Confidence 37999999999999 99999 9999 999999999 888888777765331 23566 788999 9
Q ss_pred EEeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEee
Q psy12586 79 DLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNL 119 (309)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~ 119 (309)
++.+.+..+....|.||+++|+.++|+|.+||+|+||+++-
T Consensus 181 ~l~~~~~~~~~~~y~cc~~~y~~i~f~~~irRrpl~~~~~~ 221 (230)
T 4afh_A 181 EILENSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYSR 221 (230)
T ss_dssp CEEEEEEEEEEECCTTCSSCEEEEEEEEEEECC--------
T ss_pred EEEEEEEEEEEEecCCCCCCccEEEEEEEEEEeechhhccc
Confidence 99999999999999999999999999999999999998763
No 29
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=99.75 E-value=4.2e-18 Score=147.28 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=85.5
Q ss_pred CCCceEEEEcceeE-EeeCC-CCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCC-CCccceeecC
Q psy12586 1 MNTEHATVDLPIRS-SKKPL-PIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREE-GDTTNYQVNG 76 (309)
Q Consensus 1 ~~dG~V~~~~~~~~-~~C~m-dl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~-~~~~~~~~~~ 76 (309)
.+||+|.|.+|+++ ++|+| |+++ ||. +|+|+|||| +|+..++.+.|.. +. ++++++..++
T Consensus 105 ~~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~----~y~~~~v~l~~~~----------~~~~~~~~~~~~~ 168 (203)
T 2bj0_A 105 SKDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSW----THDNKQFALITGE----------EGVVNIAEYFDSP 168 (203)
T ss_dssp ETTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEEEES----SCCTTTEEEEECT----------TTTSCTTTTCCCS
T ss_pred eCCcEEEEecceEEEEEccccccCc--cccceeeEEEEcc----cccCcEEEEEecC----------CCccchhcceecC
Confidence 37999999999999 99999 9998 999 999999999 8877777776642 23 6677889999
Q ss_pred eEEEeeeeEEEEEEeccCCCCCcceEEEEEEEEee
Q psy12586 77 EFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRR 111 (309)
Q Consensus 77 eW~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~ 111 (309)
||++.+.+..++...|.||+|+|++++++|.++|+
T Consensus 169 ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~ 203 (203)
T 2bj0_A 169 KFDLLSATQSLNRKKYSCCENMYDDIEITFAFRKK 203 (203)
T ss_dssp SEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEEC
T ss_pred CEEEEEeEEEEEEEecCCCCCCeeEEEEEEEEEEC
Confidence 99999999999999999999999999999999996
No 30
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=98.99 E-value=1.3e-11 Score=88.33 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=53.0
Q ss_pred CceEEEEehhHHHHHHHHHHHhhcCCCCcc---ccchhhhhhhHHHHHHHHHhhcccceeeeCC
Q psy12586 141 GEKVTLGISALLSMTVFLMTIRETLPPTEN---ISEYVLVSSDHFRVKYIIVADELLPTRYRGR 201 (309)
Q Consensus 141 ~~Ri~l~it~lLt~~~~l~~l~~~lP~~s~---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~ 201 (309)
++|+++|+|++|+++++...++.++|++|| +|+|++.|++|+|++ +++++++|+..|..
T Consensus 2 paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~a--LlEya~V~y~~r~~ 63 (76)
T 1vry_A 2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSA--LLEYAAVNFVSRKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHH--HHHHHHHHHHCC--
T ss_pred CceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhc
Confidence 589999999999999999999999999999 999999999999996 68888888877653
No 31
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=91.35 E-value=0.0019 Score=36.77 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=24.1
Q ss_pred CceEEEEehhHHHHHHHHHHHhhcCCC
Q psy12586 141 GEKVTLGISALLSMTVFLMTIRETLPP 167 (309)
Q Consensus 141 ~~Ri~l~it~lLt~~~~l~~l~~~lP~ 167 (309)
++|+++|++++|+++.+...++..+|+
T Consensus 2 paRv~LGittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 2 PARVGLGITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp CHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred CceEEEcchhHHHHHHHHhhHhhhCCC
Confidence 689999999999999988888888885
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.10 E-value=74 Score=30.38 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHH
Q psy12586 247 RLARTLDYIKSELDEMEREEFYRLKKI 273 (309)
Q Consensus 247 ~~~~~i~~i~~~l~e~ere~~~r~k~~ 273 (309)
.+++.++.+++..++.+++.-...+.+
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 455556666666666666555544444
No 33
>2axc_A Colicin E7; translocation domain, hydrolase; 1.70A {Escherichia coli str}
Probab=40.20 E-value=20 Score=30.88 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhHHHHHHhcCCcc
Q psy12586 283 RRTREQIERHLKEEEEHLKHPIF 305 (309)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~ 305 (309)
..+|+|.|+++.++|....||+-
T Consensus 236 e~kqrqeee~k~~qew~~~hp~~ 258 (264)
T 2axc_A 236 QVKQRQDEEKRLQQEWNDAHPVE 258 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHHHhcCchh
Confidence 34566777777888889999974
No 34
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.44 E-value=43 Score=20.16 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=23.1
Q ss_pred cchhhhHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhch
Q psy12586 217 ASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDE 261 (309)
Q Consensus 217 a~~e~~~~~L~~ei~~t~rRvnale~~~ip~~~~~i~~i~~~l~e 261 (309)
|.+++....|..+-+ |-++-|.-.+-+|.-++..|.-.+..++|
T Consensus 6 aqlenevaslenene-tlkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 6 AQLENEVASLENENE-TLKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcccH-HHHHhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 345555555554432 33344555555666666666666665554
No 35
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=27.24 E-value=1.3e+02 Score=29.28 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=24.5
Q ss_pred HHHHHhhchhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHhcCC
Q psy12586 253 DYIKSELDEMEREEFYRLKKIQDKKREALER---RTREQIERHLKEEEEHLKHP 303 (309)
Q Consensus 253 ~~i~~~l~e~ere~~~r~k~~k~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 303 (309)
+.-+..+++++|.--=+++.++++.+++.++ +....++..+||++.-|+-|
T Consensus 511 ~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g 564 (592)
T 1f5n_A 511 RKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555445555555543333332 33344555666666555443
No 36
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.93 E-value=3.4e+02 Score=25.64 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=26.2
Q ss_pred ccccchHHHHHHHHHHHHhhchhhhhHHHHHHHHHHH
Q psy12586 240 LEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDK 276 (309)
Q Consensus 240 le~~~ip~~~~~i~~i~~~l~e~ere~~~r~k~~k~~ 276 (309)
++.++ .+.+.-+.+...+++...+-.--.|.|++.
T Consensus 69 ~~~~~--~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 69 LPGII--STWQELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56554 777888888888888887777777777654
No 37
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.13 E-value=2e+02 Score=20.25 Aligned_cols=9 Identities=56% Similarity=0.542 Sum_probs=3.5
Q ss_pred HHHHhhHHH
Q psy12586 288 QIERHLKEE 296 (309)
Q Consensus 288 ~~~~~~~~~ 296 (309)
++++|+++.
T Consensus 59 ei~~le~~i 67 (84)
T 1gmj_A 59 EIERLQKEI 67 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334443333
No 38
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=21.56 E-value=1e+02 Score=24.28 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhchhhh
Q psy12586 247 RLARTLDYIKSELDEMER 264 (309)
Q Consensus 247 ~~~~~i~~i~~~l~e~er 264 (309)
.+++.++.+...+++.||
T Consensus 142 ~l~~~i~~L~~~l~~le~ 159 (166)
T 3pjs_K 142 AYTRTTRALHERFDRLER 159 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555554444
No 39
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.84 E-value=43 Score=18.61 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHhhhhccccc
Q psy12586 219 LETSHKTLNKVIRQTNQRVNAL 240 (309)
Q Consensus 219 ~e~~~~~L~~ei~~t~rRvnal 240 (309)
+|..++.|..-+.+.+.|++-|
T Consensus 4 lee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666533
Done!