RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12586
(309 letters)
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 160 bits (406), Expect = 6e-46
Identities = 48/113 (42%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 57 QLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVE-PYPDITYYISLRRRPMFY 115
++ + E + D + + +GE+ + Y K+ V Y+CC + PY DITY+ ++R P+++
Sbjct: 179 KVSISPESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYF 238
Query: 116 VFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPT 168
V N+I+PC+L + + +LVFY+P++SGEK+TL IS LLS+TVFL+ I E +P T
Sbjct: 239 VVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPST 291
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 151 bits (382), Expect = 4e-43
Identities = 51/127 (40%), Positives = 86/127 (67%), Gaps = 5/127 (3%)
Query: 57 QLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVE-PYPDITYYISLRRRPMFY 115
++ + E + D + + +GE+ + Y K+ V Y+CC + PY DITY+ ++R P+++
Sbjct: 155 KVSISPESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYF 214
Query: 116 VFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTEN----I 171
V N+I+PC+L + + +LVFY+P++SGEK+TL IS LLS+TVFL+ I E +P T + I
Sbjct: 215 VVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLI 274
Query: 172 SEYVLVS 178
+Y+L +
Sbjct: 275 GKYMLFT 281
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 146 bits (370), Expect = 8e-42
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 57 QLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYV 116
+ L + E+ + +D+ S+++V N++ + Y + + R+ Y+
Sbjct: 143 NIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYI 202
Query: 117 FNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENI 171
N+ILP + I I+ F+ S VTL +S L++ F + + LP T +
Sbjct: 203 PNIILPMLFILFISWTAFWSTS-YEANVTLVVSTLIAHIAFNILVETCLPKTPYM 256
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 141 bits (358), Expect = 8e-40
Identities = 40/129 (31%), Positives = 77/129 (59%), Gaps = 7/129 (5%)
Query: 57 QLDLLKEREEG-DTTNYQVNGEFDLLSYSSVKNVVNYSCCVE-PYPDITYYISLRRRPMF 114
+++L EEG D ++ NGE+ + + KN + + +I +++ ++R+P+F
Sbjct: 154 EVNLQLSAEEGIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLF 213
Query: 115 YVFNLILPCILINCIALLVFYVPSE-SGEKVTLGISALLSMTVFLMTIRETLPPTEN--- 170
Y+ N+I PC+LI+ + +LV+++P++ G+K TL IS LL+ T+FL I + +P T
Sbjct: 214 YIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVP 273
Query: 171 -ISEYVLVS 178
I +Y++
Sbjct: 274 LIGKYLIFV 282
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 141 bits (358), Expect = 9e-40
Identities = 43/127 (33%), Positives = 77/127 (60%), Gaps = 8/127 (6%)
Query: 57 QLDLLKEREEG-DTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFY 115
++ L + + + NG++ + S KN + Y D+T+Y+ ++R+P+FY
Sbjct: 155 EVILQHALDAMINQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFY 211
Query: 116 VFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTEN----I 171
+ I+PCILI+ +A+LVFY+P ++GEK++L ISALL++TVFL+ + + +P T I
Sbjct: 212 IVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSVPII 271
Query: 172 SEYVLVS 178
Y++
Sbjct: 272 ISYLMFI 278
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 141 bits (356), Expect = 2e-39
Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 66 EGDTTNYQVNGEFDLLSYSSVKNVVNYSC-CVEPYPDITYYISLRRRPMFYVFNLILPCI 124
D + NGE++++ + KN+ Y D+T+Y+ +RR+P+FYV N I PC+
Sbjct: 163 IIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCV 222
Query: 125 LINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTEN----ISEYVLVS 178
LI+ +A L FY+P+ESGEK++ I LL+ VFL+ + LP T I +Y++
Sbjct: 223 LISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFI 280
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 139 bits (352), Expect = 6e-38
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 59 DLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSC-CVEPYPDITYYISLRRRPMFYVF 117
D E D + NGE++++ + KN+ Y D+T+Y+ +RR+P+FYV
Sbjct: 192 DYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVI 251
Query: 118 NLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPT 168
N I PC+LI+ +A L FY+P+ESGEK++ I LL+ VFL+ + LP T
Sbjct: 252 NFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPET 302
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 135 bits (341), Expect = 2e-36
Identities = 40/101 (39%), Positives = 69/101 (68%), Gaps = 3/101 (2%)
Query: 68 DTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILIN 127
+ + NG++ + S KN + Y D+T+Y+ ++R+P+FY+ I+PCILI+
Sbjct: 200 NQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILIS 256
Query: 128 CIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPT 168
+A+LVFY+P ++GEK++L ISALL++TVFL+ + + +P T
Sbjct: 257 ILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPET 297
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 132 bits (334), Expect = 1e-35
Identities = 35/110 (31%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 61 LKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVE-PYPDITYYISLRRRPMFYVFNL 119
+ E D ++ NGE+ + + KN + + +I +++ ++R+P+FY+ N+
Sbjct: 166 VVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINI 225
Query: 120 ILPCILINCIALLVFYVPSES-GEKVTLGISALLSMTVFLMTIRETLPPT 168
I PC+LI+ + +LV+++P+++ G+K TL IS LL+ T+FL I + +P T
Sbjct: 226 IAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPET 275
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 123 bits (310), Expect = 8e-35
Identities = 36/82 (43%), Positives = 57/82 (69%)
Query: 87 KNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTL 146
+ + + ++ + + RR+P+FY NLI+PC+LI +A+LVFY+PS+ GEK+TL
Sbjct: 3 HHHHHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTL 62
Query: 147 GISALLSMTVFLMTIRETLPPT 168
IS LL++TVFL+ I + +PPT
Sbjct: 63 CISVLLALTVFLLLISKIVPPT 84
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 113 bits (285), Expect = 2e-31
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 77 EFDLLSYSSVKNVVNYSCCV-EPYPDITYYISLRRR------PMFYVFNLILPCILINCI 129
++ +K V + C + + I L + P+++V N+I PC + +
Sbjct: 7 HHAMVIDHILKCVFDKICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSEL 66
Query: 130 ALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTEN----ISEYVLVS 178
LVFY+P++SGEK+T S L S+T L I E +P T + I +Y+L +
Sbjct: 67 TGLVFYLPTDSGEKMTESKSVLKSLTEKLKKIVELIPSTSSAVPLIGKYMLFT 119
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 114 bits (288), Expect = 6e-30
Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%)
Query: 57 QLDLLKEREEGDTTNYQVNGEFDLLSYSSV-KNVVNYSCCVE------PYPDITYYISLR 109
QL + + + + E+ + +S + + Y + IT I
Sbjct: 139 QLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAV 198
Query: 110 RRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTE 169
R P +Y+++ ILP LI + VF++ S E++ + +L++ + LP
Sbjct: 199 RNPSYYLWSFILPLGLIIAASWSVFWLES-FSERLQTSFTLMLTVVAYAFYTSNILPRLP 257
Query: 170 NI 171
Sbjct: 258 YT 259
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 101 bits (253), Expect = 9e-27
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 108 LRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPP 167
P+FY NLI+PC+LI+C+ +LVFY+PSE GEK+TL IS LLS+TVFL+ I E +P
Sbjct: 3 AEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPS 62
Query: 168 TEN----ISEYVLVS 178
T + I EY+L +
Sbjct: 63 TSSVSPSIGEYLLFT 77
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 104 bits (261), Expect = 6e-26
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 9/129 (6%)
Query: 57 QLDLLKEREEGDTTNYQVNGE---FDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPM 113
++ L + ++ F L + S+ Y + I L+R
Sbjct: 157 DIEYLWKEHSPLQLKVGLSSSLPSFQLTNTST--TYCTSVTNTGIYSCLRTTIQLKREFS 214
Query: 114 FYVFNLILPCILINCIALLVFYVPSES-GEKVTLGISALLSMTVFLMTIRETLPPTEN-- 170
FY+ L +P ++ ++ + F+ + +VTLG++ LL+MT I LPP
Sbjct: 215 FYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIK 274
Query: 171 -ISEYVLVS 178
I ++
Sbjct: 275 AIDVWIGAC 283
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta
fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central
AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Length = 217
Score = 94.8 bits (235), Expect = 2e-23
Identities = 28/69 (40%), Positives = 45/69 (65%)
Query: 211 EQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRL 270
++ LA +E + + + + I +T +RVNALEY+ IP+L T+ YIK +L+E ER E RL
Sbjct: 148 PKLLKLAEVEKTCQLMAEEIEKTRRRVNALEYMTIPQLEETIYYIKMKLEENERAEVTRL 207
Query: 271 KKIQDKKRE 279
K+++ E
Sbjct: 208 IKVKNMGTE 216
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation,
vacuolar type, hydrolase, ATP synthesis, ATP-binding,
hydrogen ION transport; HET: ADP; 4.51A {Thermus
thermophilus} PDB: 3a5d_G 3j0j_G*
Length = 223
Score = 94.1 bits (233), Expect = 4e-23
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 211 EQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRL 270
E + +A+ ET K + + I++T +RVNALE VVIP + + +I+ L++ ERE+ +RL
Sbjct: 135 EALIRVANTETRLKKIGEEIKKTTRRVNALEQVVIPGIRAQIRFIQQVLEQREREDTFRL 194
Query: 271 KKIQDKKREALERRTREQIERHLKE 295
K+I+ K + ++
Sbjct: 195 KRIKGKIEAREAEEEGGRPNPQVEI 219
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 94.1 bits (234), Expect = 5e-23
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 57 QLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYV 116
++DL + ++ D ++Y + ++++LS + + V +YSCC EPY D+ + R R
Sbjct: 162 EIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNG 221
Query: 117 FNLIL 121
F L
Sbjct: 222 FFRNL 226
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 94.2 bits (233), Expect = 7e-23
Identities = 30/57 (52%), Positives = 47/57 (82%)
Query: 112 PMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPT 168
P+FY+ I+PCILI+ +A+LVFY+P ++GEK++L ISALL++TVFL+ + + +P T
Sbjct: 1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPET 57
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 93.1 bits (231), Expect = 1e-22
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 57 QLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYV 116
++D+ ++ + ++L S+ + V Y CC Y ++ Y ++LR
Sbjct: 159 EVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSENGNST 218
Query: 117 FN--LILPC 123
++ L
Sbjct: 219 YSRDLAHHH 227
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 92.9 bits (230), Expect = 1e-22
Identities = 31/57 (54%), Positives = 46/57 (80%)
Query: 112 PMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPT 168
P+++V N+I+PC+L + + LVFY+P++SGEK+TL IS LLS+TVFL+ I E +P T
Sbjct: 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPST 57
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 93.8 bits (232), Expect = 1e-22
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 112 PMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPT 168
P+FYV N I PC+LI+ +A L FY+P+ESGEK++ IS LL+ VFL+ + LP T
Sbjct: 1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPET 57
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 85.7 bits (211), Expect = 1e-19
Identities = 26/58 (44%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 112 PMFYVFNLILPCILINCIALLVFYVPSESG-EKVTLGISALLSMTVFLMTIRETLPPT 168
P+FY+ N+I PC+LI+ + +LV+++P+++G +K TL IS LL+ T+FL I + +P T
Sbjct: 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPET 58
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 81.5 bits (201), Expect = 1e-18
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 57 QLDLLKEREEGDTTNYQV-NGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFY 115
++ + E D + Y F++L + KN V YSCC E Y D+ ++ R++
Sbjct: 150 EISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSE 209
Query: 116 V 116
+
Sbjct: 210 I 210
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 77.1 bits (190), Expect = 5e-17
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 57 QLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCC-VEPYPDITYYISLRRRP 112
+ + E ++ D +N+ +GE+ + K+ V YSCC PY DITY+ ++R P
Sbjct: 156 AVAINPESDQPDLSNFMESGEWVIKEARGWKHWVFYSCCPTTPYLDITYHFVMQRLP 212
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 74.4 bits (183), Expect = 4e-16
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 57 QLDL-LKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRR 111
Q L E + Y + +FDLLS + N YSCC Y DI + R++
Sbjct: 148 QFALITGEEGVVNIAEYFDSPKFDLLSATQSLNRKKYSCCENMYDDIEITFAFRKK 203
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 69.1 bits (169), Expect = 4e-14
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 57 QLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRR 111
+LDL + +E D + Y F+L+ + ++ Y CC EPYPD+T+ ++ R++
Sbjct: 151 ELDL--QMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKK 203
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 68.5 bits (168), Expect = 6e-14
Identities = 8/61 (13%), Positives = 24/61 (39%)
Query: 57 QLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYV 116
+ L + E+ + +D+ S+++V N++ + Y + + R+ +
Sbjct: 139 NIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQGGHHH 198
Query: 117 F 117
Sbjct: 199 H 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 2e-08
Identities = 53/286 (18%), Positives = 85/286 (29%), Gaps = 94/286 (32%)
Query: 65 EEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYIS------LRRRPMFYVFN 118
D G F +L V N N P ++T + +R +F
Sbjct: 1647 NRADNHFKDTYG-FSILDI--VIN--N------P-VNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 119 LILPCILINCIALLVFYVPSESGEKVTL-GISALLSMTVF----LMTIR---------ET 164
+ +F +E T LLS T F L + +
Sbjct: 1695 ---TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 165 LPPTENI----S--EYV-LVS-SDHFRVKYIIVAD--ELLPTRYRGRAQSQEFT------ 208
L P + S EY L S +D + + E++ YRG
Sbjct: 1752 LIPADATFAGHSLGEYAALASLAD-----VMSIESLVEVV--FYRGMTMQVAVPRDELGR 1804
Query: 209 --------LPEQVRPLASLETSHKTLNKVIRQTNQRV-----NA--LEYVV------IPR 247
P +V S E + +V ++T V N +YV +
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT 1864
Query: 248 LARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHL 293
+ L++IK L+KI E + + E++E HL
Sbjct: 1865 VTNVLNFIK-------------LQKI--DIIELQKSLSLEEVEGHL 1895
Score = 49.7 bits (118), Expect = 8e-07
Identities = 62/382 (16%), Positives = 115/382 (30%), Gaps = 114/382 (29%)
Query: 3 TEHATVDLPIRS-------SKKPLPIRKIPSEIKLSLTSEEWVPTYLRFP---NLIIYF- 51
T I++ +K+P +K S + E F N YF
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFD-KKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 52 --------------PLFLLQLDLLKE--REEGDTTNYQVNGEFDL---LSYSSVKNVVNY 92
L + L E R D G ++ L S +Y
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWLENPSNTPDKDY 230
Query: 93 SCCVEPY--PDIT------YYISLRR---RPMFYVFNLILPCILINCIALLVFYVPSESG 141
+ P P I Y ++ + P L + L+ +E+
Sbjct: 231 LLSI-PISCPLIGVIQLAHYVVTAKLLGFTPG--ELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 142 EKVTLGISALLSMTV-FLMTIR--ETLPPTENISEYVLVSSDHFRVKYIIVADELLPTRY 198
+ +S ++TV F + +R E P T + S ++ +E +P+
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN---------NEGVPS-- 336
Query: 199 RGRAQSQEFTLPEQVRPLASLE-TSHKTLNKVIRQTNQR-----------VNALEYVVI- 245
P+ S+ + + + + +TN VN + +V+
Sbjct: 337 ----------------PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 246 --PR----LARTLDYIK--SELDEMEREEFYRLKKIQDKKR---------EALERRTREQ 288
P+ L TL K S LD+ R F +K++ R L +
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQ-SRIPF-SERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 289 IERHLKEEE-----EHLKHPIF 305
I + L + + ++ P++
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVY 460
Score = 33.1 bits (75), Expect = 0.13
Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 56/137 (40%)
Query: 170 NISEYVLVSSDHFRVKYIIVADEL-------LPTRYRGRAQSQEFTLPEQVRPLASLETS 222
++ +LV + F +A +L LP G A E P E
Sbjct: 15 SLEHVLLVPTASF-----FIASQLQEQFNKILPEPTEGFAADDE--------PTTPAE-- 59
Query: 223 HKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALE 282
L + + L Y+ S ++ + +F + L
Sbjct: 60 -----------------L-------VGKFLGYVSSLVEPSKVGQF----------DQVLN 85
Query: 283 RRTREQIERHLKEEEEH 299
E +L+ + H
Sbjct: 86 LCLTEFENCYLEGNDIH 102
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.5 bits (99), Expect = 5e-05
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 258 ELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKE----EEEHLKHP 303
ELD + ++ K E +R EQ+E++ ++ + P
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149
Score = 34.0 bits (77), Expect = 0.034
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 256 KSELDEM---EREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHL 300
+ E E + EE+ + Q ++ E + R + ++ + +
Sbjct: 109 EQEWREKAKKDLEEWNQR---QSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 32.4 bits (73), Expect = 0.094
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 257 SELDEME---------REEF-YRLKKIQDKKREALERRTREQIERHLKE 295
++ D + REE RL++ D + +E+ RE+ ++ L+E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQE-LDAASKVMEQEWREKAKKDLEE 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 7e-04
Identities = 54/331 (16%), Positives = 97/331 (29%), Gaps = 71/331 (21%)
Query: 9 DLPIRSSKKPLPIRKIPSEIKLSLTSEEWVPTYLRFPNLIIY--FPLFLLQLDLLKEREE 66
L + S IKL + + LR L+ + LL L
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELR--RLLKSKPYENCLLVLL------- 251
Query: 67 GDTTNYQVNGEFD-----LL--SYSSVKNVVNYSCCVEPYPDITYYISL-RRRPMFYVFN 118
+ N + F+ LL + V + ++ T +ISL
Sbjct: 252 -NVQNAKAWNAFNLSCKILLTTRFKQVTDFLS--------AATTTHISLDHHSMTLTPDE 302
Query: 119 LILPCILINCIALLVFYVPSESGEKVTLGISAL-LSMTVFLMTIRETLPPTENISEYVL- 176
+ +L+ + +P E L + LS+ I E++ +
Sbjct: 303 VK--SLLLKYLDCRPQDLPRE-----VLTTNPRRLSI------IAESIRDGLATWDNWKH 349
Query: 177 VSSDHFRVKYIIVA--DELLPTRYRGRAQSQEFT-LPEQVR-PLASL---------ETSH 223
V+ D ++ II + + L P YR + P P L
Sbjct: 350 VNCD--KLTTIIESSLNVLEPAEYRKMFD--RLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 224 KTLNKVIRQT--NQRVNALEYVVIPRLARTLDYIKSELDEMERE--EFYRLKKIQDKKRE 279
+NK+ + + ++ IP + L + R + Y + K D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 280 ALERRTR---EQIERHLKEEEEHLKHPIFQK 307
+ I HLK E + +F+
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Score = 39.1 bits (90), Expect = 0.002
Identities = 41/292 (14%), Positives = 79/292 (27%), Gaps = 79/292 (27%)
Query: 15 SKKPLPIRKIPSEIK---LSLTSEEWVPTY--------------LRFPNLIIYFPLFLLQ 57
+K + + +++ L L + V + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 58 LDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMF--- 114
L+L L Y N + S + I R +
Sbjct: 187 LNLKNCNSPETVLEMLQK-----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 115 -YVFNLILPCIL-------------INCIALLVFYVPSESGEK-VTLGISALLSMTVFLM 159
Y L+ +L ++C LL + K VT +SA + + L
Sbjct: 242 PYENCLL---VLLNVQNAKAWNAFNLSCKILLT------TRFKQVTDFLSAATTTHISLD 292
Query: 160 TIRETLPPTENISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPE--QVRPLA 217
TL P E + +L+ KY+ + LP E P
Sbjct: 293 HHSMTLTPDE--VKSLLL-------KYLDCRPQDLP--------------REVLTTNPRR 329
Query: 218 SLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYR 269
+ + IR + ++V +L ++ + L+ E + +
Sbjct: 330 -----LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Score = 36.8 bits (84), Expect = 0.009
Identities = 50/314 (15%), Positives = 86/314 (27%), Gaps = 68/314 (21%)
Query: 16 KKPLPIRKIPSEIKLSLTSEEWVPTYLRFPNLI--IYFPLFLLQLDLLKER--------- 64
+ + K L+ EE + + + + LF L +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSGTLR-LF----WTLLSKQEEMVQKFV 83
Query: 65 EEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRR-----PMFYVFNL 119
EE NY L S +K +P YI R R +F +N+
Sbjct: 84 EEVLRINY------KFL-MSPIKTE-----QRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 120 -ILPCI--LINCI------ALLVFYVPSESGEKVTLGISALLSMT--------VFLMTIR 162
L L + ++ SG K + + LS +F + ++
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 163 ETLPPTENISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQE----FTLPEQVRPLAS 218
P E + E + + +D + R + E L
Sbjct: 191 NCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 219 LET--SHKTLN------KVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRL 270
L + K N K++ T + +LD+ L E +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 271 K---KIQDKKREAL 281
+ QD RE L
Sbjct: 310 YLDCRPQDLPREVL 323
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third
transmembrane domain, membrane protein; NMR {Homo
sapiens} SCOP: j.35.1.1
Length = 76
Score = 31.8 bits (72), Expect = 0.038
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 144 VTLGISALLSMTVFLMTIRETLPPTENI 171
V LGI+ +L++T R +LP +
Sbjct: 5 VGLGITTVLTLTTQSSGSRASLPKVSYV 32
>2ia1_A BH3703 protein; unknown function, structural genomics, PSI, protein
structur initiative; 1.59A {Bacillus halodurans} SCOP:
d.359.1.1 PDB: 3i0t_A
Length = 178
Score = 33.0 bits (75), Expect = 0.069
Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 253 DYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKHPIFQ 306
Y K+ D ++ + ++ +E + +L+E+ + ++P +
Sbjct: 115 YYDKNPFDTFLTRLAWQYEHFGTIPEDSFY---KETLNEYLEEKAQGKRYPFLE 165
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics,
seattle structural genomics center for infectious
disease; HET: HEM; 1.81A {Brucella melitensis biovar
ABORTUS2308}
Length = 182
Score = 31.2 bits (70), Expect = 0.28
Identities = 6/42 (14%), Positives = 19/42 (45%)
Query: 261 EMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKH 302
+ E + K+ ++ + + +++ + L +EE H+
Sbjct: 113 KGEYDARASYKESREICDKLGDYVSKQLFDELLADEEGHIDF 154
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A
{Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A*
3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A*
3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Length = 158
Score = 30.7 bits (69), Expect = 0.35
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 260 DEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHL 300
+E + L++ + +R+ + L++EE H+
Sbjct: 91 LALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHI 131
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.7 bits (68), Expect = 0.41
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 256 KSELDEMEREEFYRLKKIQDKKREALE---RRTREQIERHLKE----EEEHLKHP 303
+ L E++ ++ ++K ++ LE +R EQ+E++ ++ + P
Sbjct: 110 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 164
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding
protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP:
a.25.1.1 PDB: 2fl0_A* 1sof_A*
Length = 155
Score = 29.9 bits (67), Expect = 0.58
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 261 EMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKH 302
++E+ LK + +RE +E L+ EE+H+
Sbjct: 92 KLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDW 133
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain,
micelles, membrane protein; NMR {Homo sapiens} SCOP:
j.35.1.1
Length = 28
Score = 27.0 bits (59), Expect = 0.77
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 143 KVTLGISALLSMTVFLMTIRETLP 166
+V LGI+ +L+MT R +LP
Sbjct: 4 RVGLGITTVLTMTTQSSGSRASLP 27
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM
Fe-coproporphyrin III cofactor, iron storage-electron
complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans}
SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Length = 179
Score = 29.6 bits (66), Expect = 0.80
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 260 DEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKH 302
+ E + +E + T ER ++EE+ HL +
Sbjct: 96 ADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTY 138
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 30.3 bits (68), Expect = 0.85
Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 199 RGRAQSQEFTLPEQVRPLASLETSH--------KTLNKVIRQTNQRVN--ALEYVVIPRL 248
GRA + L + + L+ ++ +H ++ ++ + + AL V+ +
Sbjct: 248 TGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKN 307
Query: 249 ARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTR 286
R + EL ++ E R KK D+++E +
Sbjct: 308 -RAIQENHKELMHIKNEILPRFKKAMDEEKEICGIEDK 344
>2v7q_J ATPase inhibitor; ION transport, mitochondrion, transit peptide,
inhibitor Pro hydrolase; HET: ATP ADP; 2.1A {Bos taurus}
SCOP: h.4.8.1
Length = 66
Score = 27.4 bits (60), Expect = 1.3
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 257 SELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKH 302
+ ++ E E ++R ++ AL++ +I H KE H H
Sbjct: 23 GKREQAEEERYFR--ARAKEQLAALKKHHENEISHHAKEIHHHHHH 66
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase
family 9, phosphotransfer, transferase two-component
system; 2.30A {Rhodopseudomonas palustris}
Length = 164
Score = 28.9 bits (64), Expect = 1.4
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 174 YVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLASLETSHKTLNKVIRQT 233
++L + +R YI D L RA + PEQ+ + L + +
Sbjct: 41 FLLTGIETYRDSYIRARDALAARLDGLRAVLADN--PEQIAHIDELRLLTDMRMAQLGRV 98
Query: 234 -----NQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTR 286
+ AL+ + R+ R + I++ L + R E L ++ +R +
Sbjct: 99 VELGPERMREALDILEQARVDRLTERIETSLSVLTRAEQALL----IQRLSKHDRESL 152
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural
genomics consort TBSGC, metal binding protein; HET: HEM;
2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Length = 174
Score = 28.8 bits (64), Expect = 1.6
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 260 DEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHL 300
+E + RLK RE + + +E+ + +EEEH+
Sbjct: 93 LAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHI 133
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein;
HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Length = 161
Score = 28.4 bits (63), Expect = 1.8
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 260 DEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHL 300
E + ++ +D E + ++ E + +EE H+
Sbjct: 91 LAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHV 131
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 29.1 bits (64), Expect = 1.9
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 252 LDYIKSELDEMERE---EFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKHPIF 305
L + E + E + E + L++ + + RE + + + + P F
Sbjct: 58 LKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPEF 114
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.3 bits (66), Expect = 1.9
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 199 RGRAQSQEFTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSE 258
R A+ + L + R + + H L I Q ++++ + ++L +
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN-----KEYKSLLEKMNN 953
Query: 259 LDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEE 297
L+ E +L+ ++ R + E +EE
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme,
metal binding protein; HET: HEM; 2.80A {Rhodobacter
sphaeroides}
Length = 161
Score = 28.3 bits (63), Expect = 2.3
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 260 DEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKH 302
E + + +D + + ++ E + +EE H+ +
Sbjct: 91 LAAEHDARTLYIEARDHCEKVRDYPSKMLFEELIADEEGHIDY 133
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 29.1 bits (66), Expect = 2.3
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 242 YVVIPRLARTLDYIKSELDEMEREEFYRLKKI--QDKKREA--LERRTREQIE 290
Y+ L L I+ EL E R++ + + A L+ RT +E
Sbjct: 244 YLSPEGLEEILKEIEKELWE-------RVRYFEERGEVLYAQRLKERTLYDLE 289
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 28.3 bits (62), Expect = 4.0
Identities = 19/143 (13%), Positives = 48/143 (33%), Gaps = 14/143 (9%)
Query: 176 LVSSDHFRVKYIIVADELLP------TRYRGRAQSQEFTLPEQVRPLASLETSHKTLNKV 229
++ R ++ A+ + P + TL +Q+ L E S
Sbjct: 601 QQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPK 660
Query: 230 IRQTNQRVNALEYVVIP---RLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTR 286
I Q ++ +I T+++I+ +++ + ++++ + L R +
Sbjct: 661 IDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVEN---QILTRDAK 717
Query: 287 EQIERHLKEEEEHLKHPIFQKHH 309
+ + E H F +
Sbjct: 718 GISQEQMNEFRASFNH--FDRKK 738
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent
oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP:
h.4.8.1 PDB: 1ohh_H* 1hf9_A
Length = 84
Score = 26.2 bits (57), Expect = 4.3
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 261 EMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEH 299
E EE Y + ++ AL++ +I H KE E
Sbjct: 26 EQAEEERY-FRARAKEQLAALKKHKENEISHHAKEIERL 63
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 27.7 bits (62), Expect = 4.6
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 267 FYRLKKIQDKKREALERRTREQIERHLKEEEEHLKHPIFQK 307
F R +DK+ +E +Q ++ L EE + L+ +F +
Sbjct: 105 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 145
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton,
headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Length = 37
Score = 24.9 bits (55), Expect = 4.7
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 262 MEREEFYRL---KKIQDKKREAL 281
+ R +F L K++Q KK + L
Sbjct: 14 ITRGQFAALPGWKQLQMKKEKGL 36
>1ybf_A AMP nucleosidase; structural genomics, protein structure
initiative, PSI, NEW research center for structural
genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron}
SCOP: c.56.2.1
Length = 268
Score = 27.5 bits (61), Expect = 4.8
Identities = 2/19 (10%), Positives = 8/19 (42%)
Query: 169 ENISEYVLVSSDHFRVKYI 187
+ Y+L+++ +
Sbjct: 23 IDFEPYILLTNFSHYLHVF 41
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.9 bits (62), Expect = 5.0
Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 196 TRYRGRAQSQEFTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYI 255
+ + +E L + L + K IR+ ++ L+ L+
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ--------EDLESE 1135
Query: 256 KSELDEMEREEFYRLKKIQDKKR--EALERRTREQIERHLKEEEE 298
K+ ++ E+++ ++++ K E T Q E + ++
Sbjct: 1136 KAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 27.2 bits (60), Expect = 6.1
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 252 LDYIKSELDEMEREEFYRLKKIQDKKREALERRTR-EQIERHLKEEEEHLKHPIFQKHH 309
+ E + + ++ I + + + E + + ++E + E+ LK HH
Sbjct: 190 KSKWRHEANTWQN----IIQTISNNQPVSTENQAKIRELEHKIALVEDVLKEGHHHHHH 244
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI,
protein structure initiative UDP, ontario/toronto SGC;
1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A*
3enz_A*
Length = 267
Score = 27.1 bits (60), Expect = 6.4
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 169 ENISEYVLVSSDHFRVKYI 187
+ VLV D RV +
Sbjct: 36 SQTTPVVLVVGDPGRVDKV 54
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich,
helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET:
GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP:
a.211.1.1 d.218.1.8
Length = 393
Score = 27.5 bits (62), Expect = 6.6
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 16/69 (23%)
Query: 255 IKSELDE-----MEREEFYRLKKIQDKK---REALERRTREQIERHLKEEEEHL------ 300
IK EL++ + EFY++ + ++K REAL +I+ + E+
Sbjct: 183 IKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGDVYGRP 242
Query: 301 KHP--IFQK 307
KH I++K
Sbjct: 243 KHIYSIYRK 251
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, subtilisin, tubulin;
HET: GTP GDP MES; 2.64A {Artificial gene}
Length = 87
Score = 25.8 bits (56), Expect = 6.6
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 270 LKKIQDKKREALERRTREQIE--RHLKEEEEHLK 301
L++IQ K A ERR L+E+++H +
Sbjct: 44 LEEIQKKLEAAEERRKAHFAAMLERLQEKDKHAE 77
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 27.1 bits (59), Expect = 7.4
Identities = 16/108 (14%), Positives = 41/108 (37%), Gaps = 15/108 (13%)
Query: 205 QEFTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMER 264
E +Q+ L +L+ S ++ K I++ + V+ R K+ + +++
Sbjct: 114 TELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSD----KAAQERLKK 169
Query: 265 E-----------EFYRLKKIQDKKREALERRTREQIERHLKEEEEHLK 301
E L + + ++ LE + E + ++E + +
Sbjct: 170 EINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQ 217
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase,
riken structural genomics/proteomics initiative, RSGI;
1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A*
1odi_A 1odl_A
Length = 235
Score = 27.0 bits (60), Expect = 7.4
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 154 MTVFLMTIRETLPPTENISEYVLVSSDHFRVKYI 187
M+ + +++E VL+ D R ++I
Sbjct: 1 MSPIHVRAHP-----GDVAERVLLPGDPGRAEWI 29
>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione;
HET: GSH; 1.05A {Escherichia coli}
Length = 202
Score = 26.9 bits (60), Expect = 7.8
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 267 FYRLKKIQDKKREALERRTREQIERHLKEEEEHLKHPIF 305
+ ++ E R RE+I R L E +L
Sbjct: 108 VREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTL 146
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase,
MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans}
Length = 196
Score = 26.7 bits (59), Expect = 7.9
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 267 FYRLKKIQDKKREALERRTREQIERHLKEEEEH 299
++KI D +R+ L + + L+ H
Sbjct: 163 LTSIEKISDDERQKLLHKVAQITRNILEHHHHH 195
>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET:
IMH; 1.90A {Toxoplasma gondii}
Length = 279
Score = 26.8 bits (59), Expect = 8.3
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 169 ENISEYVLVSSDHFRVKYI 187
E++ V++ D R + +
Sbjct: 18 EDVEPVVIIVGDPARTEEV 36
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein,
transferase; 1.60A {Sulfolobus solfataricus} SCOP:
c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A
1je1_A* 1jp7_A 1jpv_A
Length = 236
Score = 26.7 bits (59), Expect = 8.3
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 159 MTIRETLPPTENISEYVLVSSDHFRVKYI 187
M L ++E VLV D R + +
Sbjct: 1 MNPVHILAKKGEVAERVLVVGDPGRARLL 29
>3sto_A Serine protease inhibitor; serpin fold, hydrolase inhibitor; 2.41A
{Schistosoma haematobium}
Length = 406
Score = 26.9 bits (60), Expect = 9.1
Identities = 8/79 (10%), Positives = 22/79 (27%), Gaps = 19/79 (24%)
Query: 179 SDHFRVKYIIVADEL------LPTRYRGRAQSQEFTLPEQVRPLASLE---TSHKTLNKV 229
+ ++ P + LP + L +K L++
Sbjct: 228 EGVMKYGKF---EDEGFEIVSKP--LNNTRFTFVIVLPLEKWSLNGATELLNGNKVLSEY 282
Query: 230 IRQ-TNQRVNALEYVVIPR 247
++ V+ + +P+
Sbjct: 283 VKNLKETTVS----LRLPK 297
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 9.5
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 8/29 (27%)
Query: 21 IRKIPSEIKLSLTSEEWVPTYLRFPNLII 49
++K+ + +KL + P L I
Sbjct: 22 LKKLQASLKL------YADD--SAPALAI 42
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 27.1 bits (61), Expect = 9.9
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
Query: 233 TNQRVNALEYVVI----------PRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALE 282
T + + ++V I ++ + + I+ EL+E + + + K+ + +R LE
Sbjct: 231 TGEILGDRDHVAIFPASHFVTRAEKMEKAIQNIEKELEE-QLKVMHENGKLLEAQR--LE 287
Query: 283 RRTREQIE 290
+RTR +E
Sbjct: 288 QRTRYDLE 295
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.394
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,724,939
Number of extensions: 282539
Number of successful extensions: 883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 105
Length of query: 309
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 216
Effective length of database: 4,105,140
Effective search space: 886710240
Effective search space used: 886710240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)