RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12586
(309 letters)
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 94.5 bits (234), Expect = 2e-23
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 112 PMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENI 171
P+FYV N I PC+LI+ +A L FY+P+ESGEK++ IS LL+ VFL+ + LP T
Sbjct: 1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPET--- 57
Query: 172 SEYVLVSSDHFRVKYIIVA 190
+ V + + +V
Sbjct: 58 ALAVPLIGKYLMFIMSLVT 76
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 94.1 bits (233), Expect = 3e-23
Identities = 35/79 (44%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 112 PMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENI 171
P+FY+ I+PCILI+ +A+LVFY+P ++GEK++L ISALL++TVFL+ + + +P T
Sbjct: 1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPET--- 57
Query: 172 SEYVLVSSDHFRVKYIIVA 190
S V + + I+VA
Sbjct: 58 SLSVPIIIRYLMFIMILVA 76
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 227
Score = 92.9 bits (230), Expect = 4e-23
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 112 PMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENI 171
P+++V N+I+PC+L + + LVFY+P++SGEK+TL IS LLS+TVFL+ I E +P T
Sbjct: 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPST--- 57
Query: 172 SEYVLVSSDHFRVKYIIVA 190
S V + + I V
Sbjct: 58 SSAVPLIGKYMLFTMIFVI 76
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 89.1 bits (220), Expect = 2e-21
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 112 PMFYVFNLILPCILINCIALLVFYVPSES-GEKVTLGISALLSMTVFLMTIRETLPPTEN 170
P+FY+ N+I PC+LI+ + +LV+++P+++ G+K TL IS LL+ T+FL I + +P T
Sbjct: 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPET-- 58
Query: 171 ISEYVLVSSDHFRVKYIIVA 190
S V + + +
Sbjct: 59 -SLNVPLIGKYLIFVMFVSM 77
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
pond snail (Lymnaea stagnalis) [TaxId: 6523]}
Length = 208
Score = 66.3 bits (161), Expect = 1e-13
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 57 QLDLLKEREEGDTTNYQV-NGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRP 112
++ + E D + Y F++L + KN V YSCC E Y D+ ++ R++
Sbjct: 150 EISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG 206
>d2ia1a1 d.359.1.1 (A:1-166) Uncharacterized protein BH3703
{Bacillus halodurans [TaxId: 86665]}
Length = 166
Score = 33.5 bits (77), Expect = 0.012
Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 253 DYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKHPIFQ 306
Y K+ D ++ + ++ +E + +L+E+ + ++P +
Sbjct: 114 YYDKNPFDTFLTRLAWQYEHFGTIPEDSFY---KETLNEYLEEKAQGKRYPFLE 164
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 310
Score = 29.9 bits (67), Expect = 0.37
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 220 ETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKRE 279
E H T+ K+ + + LE +LAR + D + L++ ++ +E
Sbjct: 159 EILHSTIRKMNKHVLKIQKELEEA-KEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQE 217
Query: 280 ALERRTREQ 288
+E EQ
Sbjct: 218 KVESAQSEQ 226
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 29.3 bits (65), Expect = 0.57
Identities = 15/101 (14%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 201 RAQSQEFTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELD 260
+E + + S + S K L+++ R+ Q + E L + + ++++
Sbjct: 198 TLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV 257
Query: 261 EMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLK 301
++ +E+ L ++ + L+ +++ +K E + L+
Sbjct: 258 QLLKEQERTLALKLQEQEQLLKEGFQKESRI-MKNEIQDLQ 297
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1)
{Escherichia coli [TaxId: 562]}
Length = 158
Score = 28.5 bits (63), Expect = 0.60
Identities = 8/63 (12%), Positives = 25/63 (39%)
Query: 240 LEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEH 299
L+ + + ++ + +E + L++ + +R+ + L++EE H
Sbjct: 71 LQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGH 130
Query: 300 LKH 302
+
Sbjct: 131 IDW 133
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 160
Score = 28.1 bits (62), Expect = 1.0
Identities = 7/52 (13%), Positives = 17/52 (32%)
Query: 251 TLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKH 302
E + ++ +D E + ++ E + +EE H+
Sbjct: 82 GPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDF 133
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1)
{Azotobacter vinelandii [TaxId: 354]}
Length = 154
Score = 27.4 bits (60), Expect = 1.4
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 251 TLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKH 302
+ ++E+ LK + +RE +E L+ EE+H+
Sbjct: 82 HTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDW 133
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.4 bits (60), Expect = 2.8
Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 8/142 (5%)
Query: 41 YLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYP 100
Y P+L+ + LL ++ G T L++ + KN + V
Sbjct: 168 YRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAA-----TSLITTLAQKNPEEFKTSVSLAV 222
Query: 101 DITYYI---SLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVF 157
I + + + + P + + + LL Y P E L ++
Sbjct: 223 SRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNK 282
Query: 158 LMTIRETLPPTENISEYVLVSS 179
++ + ++ ++
Sbjct: 283 AQEPPKSKKVQHSNAKNAVLFE 304
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 35
Score = 24.3 bits (53), Expect = 2.9
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 262 MEREEFYRLK--KIQDKKREA 280
M R F L K Q+ K+E
Sbjct: 12 MTRSAFANLPLWKQQNLKKEK 32
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 26.4 bits (58), Expect = 3.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 270 LKKIQDKKREALERRTREQIERHLKEEEEHLK 301
L++IQ K A ERR ++ E E+
Sbjct: 44 LEEIQKKLEAAEERRKYQEAELLKHLAEKREH 75
Score = 24.8 bits (54), Expect = 8.6
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 258 ELDEMEREEFYRLKKIQ-DKKREALERRTREQI---ERHLKEEEEHLK 301
+ E F ++ K + +K E+ + + L+E+++H +
Sbjct: 81 QKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAE 128
Score = 24.8 bits (54), Expect = 8.7
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 261 EMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEE 298
+ME + R + E+ + R KE +E
Sbjct: 101 KMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 146
Score = 26.2 bits (57), Expect = 3.4
Identities = 8/51 (15%), Positives = 10/51 (19%)
Query: 251 TLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLK 301
T + + E RE EE H K
Sbjct: 82 THANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEK 132
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.8 bits (52), Expect = 4.1
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 262 MEREEFYRLK--KIQDKKREA 280
+ R +F L K K+E
Sbjct: 13 ITRGQFAALPGWKQLQMKKEK 33
>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 25.9 bits (56), Expect = 4.3
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 264 REEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKHPIF 305
F +K QD K + +++ + +L +
Sbjct: 24 MSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREW 65
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP
{Bacillus anthracis [TaxId: 1392]}
Length = 231
Score = 26.3 bits (57), Expect = 4.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 169 ENISEYVLVSSDHFRVKYI 187
I+E +L+ D R KYI
Sbjct: 9 GEIAESILLPGDPLRAKYI 27
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 169
Score = 25.8 bits (56), Expect = 4.6
Identities = 10/63 (15%), Positives = 21/63 (33%)
Query: 240 LEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEH 299
+ + + I + E + +E + T ER ++EE+ H
Sbjct: 73 TQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAH 132
Query: 300 LKH 302
L +
Sbjct: 133 LTY 135
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA
[TaxId: 562]}
Length = 161
Score = 25.7 bits (56), Expect = 4.9
Identities = 5/42 (11%), Positives = 17/42 (40%)
Query: 261 EMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKH 302
+ E+ ++ ++ + T ++ ++ E+ E K
Sbjct: 91 KHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKL 132
>d2hmza_ a.24.4.1 (A:) Hemerythrin {Sipunculid worm (Themiste
dyscritum) [TaxId: 6436]}
Length = 113
Score = 24.9 bits (54), Expect = 6.3
Identities = 6/55 (10%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 258 ELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLK---HPIFQKHH 309
+D+ + F + + R +H E++ ++ + + +H
Sbjct: 20 IVDDEHKTLFNGILLLSQADNADHLNELRRCTGKHFLNEQQLMQASQYAGYAEHK 74
>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus
thermophilus [TaxId: 274]}
Length = 234
Score = 25.6 bits (55), Expect = 6.9
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 169 ENISEYVLVSSDHFRVKYIIVADELL 194
+++E VL+ D R ++I A L
Sbjct: 10 GDVAERVLLPGDPGRAEWI--AKTFL 33
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.8 bits (57), Expect = 6.9
Identities = 9/43 (20%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 261 EMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKHP 303
+ + +F ++ + + EA ++ ++E+ + +KEE E L
Sbjct: 96 NLSKCDFTQMSQYFKAQTEARKQMSKEEKLK-IKEENEKLLKE 137
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio
cholerae [TaxId: 666]}
Length = 237
Score = 25.5 bits (55), Expect = 8.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 169 ENISEYVLVSSDHFRVKYI 187
+ ++ VL+ D R KYI
Sbjct: 10 GDFADVVLMPGDPLRAKYI 28
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 135
Score = 24.7 bits (53), Expect = 8.9
Identities = 7/39 (17%), Positives = 10/39 (25%), Gaps = 2/39 (5%)
Query: 261 EMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEH 299
E + Y K +E + R E H
Sbjct: 94 IYETSDMY--PAFIRKAQEEGNSKAVHVFTRAKLAESVH 130
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 234
Score = 25.5 bits (55), Expect = 9.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 169 ENISEYVLVSSDHFRVKYI 187
++E VLV D R + +
Sbjct: 9 GEVAERVLVVGDPGRARLL 27
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon
Sulfolobus tokodaii [TaxId: 111955]}
Length = 141
Score = 25.0 bits (54), Expect = 9.1
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 255 IKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLK 301
I+S + E RE E E + E+ H +
Sbjct: 83 IESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAE 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.394
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,150,834
Number of extensions: 54466
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 49
Length of query: 309
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,240,546
Effective search space: 277882304
Effective search space used: 277882304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)