BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12587
(390 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 15/152 (9%)
Query: 197 FLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYXXXXXX 256
+LS+NR +K +EL + + +L DE KL + G + + + E Y
Sbjct: 26 WLSVNRIYPEKRIELQL----EVFKKLQDE-----KLYIVGWFSKGD--HAERYARKIXK 74
Query: 257 XXXXXXSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG 316
DNV FL S S+ I L+ C ++ T +E FG+ PIEA +PVIAVN G
Sbjct: 75 IA----PDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAXASGKPVIAVNEG 130
Query: 317 GPKESVVDGRTGFLCESNEEAFAKAMKKIVDN 348
G KE+V++ +TG+L ++ A KK+ N
Sbjct: 131 GFKETVINEKTGYLVNADVNEIIDAXKKVSKN 162
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 127/318 (39%), Gaps = 48/318 (15%)
Query: 100 LFYCHYPDQLLSKQ-GSFLKSIYRFPL--------------------NKLEEWTTCKADK 138
L + HY LS Q G L+ ++R PL + E C+ +
Sbjct: 105 LIHSHY---WLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICE-QQ 160
Query: 139 IVVNSEFTKSVVQATFRSLDH------KCLDILYPS----VYTEGLEKTTPEPIENVLNP 188
+V N++ Q + L H + ++ P +Y+ G ++ T + P
Sbjct: 161 LVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIP 220
Query: 189 LPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVE 248
L K V + R + K ++ I ++ +L R D ++++++ GG N
Sbjct: 221 LHTK---VVAFVGRLQPFKGPQVLIKAVAALFDRDPDR---NLRVIICGGPSGPNATPDT 274
Query: 249 YYXXXXXXXXXXXXSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR 308
Y + FL + +++++ + NE FG+V +EA
Sbjct: 275 Y----RHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGT 330
Query: 309 PVIAVNSGGPKESVVDGRTGFLCESNE-EAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEK 367
PVIA GG +V +G TG L + + A+A A+ ++D+D I+
Sbjct: 331 PVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGED--AVEHART 388
Query: 368 FSFQAFSIQLNTIVNNML 385
FS+ A + QL+++ N+ +
Sbjct: 389 FSWAATAAQLSSLYNDAI 406
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 127/318 (39%), Gaps = 48/318 (15%)
Query: 100 LFYCHYPDQLLSKQ-GSFLKSIYRFPL--------------------NKLEEWTTCKADK 138
L + HY LS Q G L+ ++R PL + E C+ +
Sbjct: 125 LIHSHY---WLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICE-QQ 180
Query: 139 IVVNSEFTKSVVQATFRSLDHKC------LDILYPS----VYTEGLEKTTPEPIENVLNP 188
+V N++ Q + L H + ++ P +Y+ G ++ T + P
Sbjct: 181 LVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIP 240
Query: 189 LPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVE 248
L K V + R + K ++ I ++ +L R D ++++++ GG N
Sbjct: 241 LHTK---VVAFVGRLQPFKGPQVLIKAVAALFDRDPDR---NLRVIICGGPSGPNATPDT 294
Query: 249 YYXXXXXXXXXXXXSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR 308
Y + FL + +++++ + NE FG+V +EA
Sbjct: 295 Y----RHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGT 350
Query: 309 PVIAVNSGGPKESVVDGRTGFLCESNE-EAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEK 367
PVIA GG +V +G TG L + + A+A A+ ++D+D I+
Sbjct: 351 PVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGED--AVEHART 408
Query: 368 FSFQAFSIQLNTIVNNML 385
FS+ A + QL+++ N+ +
Sbjct: 409 FSWAATAAQLSSLYNDAI 426
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Query: 264 DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVV 323
D VLFL + A+ L ++ E FG+V +EAM C P I GG E +
Sbjct: 267 DRVLFLGKQDNVAE--LLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQ 324
Query: 324 DGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383
G TG+LCE + + D + + + E+F + Q TI +
Sbjct: 325 HGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYYD 384
Query: 384 ML--DKKTK 390
+L DK K
Sbjct: 385 VLRDDKNGK 393
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Query: 264 DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVV 323
D VLFL + A+ L ++ E FG+V +EAM C P I GG E +
Sbjct: 287 DRVLFLGKQDNVAE--LLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQ 344
Query: 324 DGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383
G TG+LCE + + D + + + E+F + Q TI +
Sbjct: 345 HGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYYD 404
Query: 384 ML--DKKTK 390
+L DK K
Sbjct: 405 VLRDDKNGK 413
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 294 EHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD------ 347
E FG+ +EAM C P A GGP E +V G++GF + +A + D
Sbjct: 675 EAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHG--DQAADTLADFFTKCK 732
Query: 348 NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382
D + + S+ G R EK+++Q +S +L T+
Sbjct: 733 EDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTG 767
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 294 EHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD------ 347
E FG+ +EA C P A GGP E +V G++GF + +A + D
Sbjct: 675 EAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHG--DQAADTLADFFTKCK 732
Query: 348 NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382
D + + S+ G R EK+++Q +S +L T+
Sbjct: 733 EDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTG 767
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 275 AAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESN 334
A+K S+F Y P FG+ P+EAM P + +GGP E + G+ G L +
Sbjct: 356 ASKGSVFALTS--FYEP----FGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPE 409
Query: 335 E-EAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKKTK 390
+ E A+ + K +++ + + G R E++++Q + ++ + D+K +
Sbjct: 410 DPEDIARGLLKAFESE-ETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKDE 465
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 275 AAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES 333
A +++ F+ +I S E FG+ EAM+ +PVI GG K +VDG TGFL
Sbjct: 306 AREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRD 365
Query: 334 NEEA 337
EA
Sbjct: 366 ANEA 369
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 275 AAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES 333
A +++ F+ +I S E FG+ EA + +PVI GG K +VDG TGFL
Sbjct: 306 AREVNAFQRASDVILQXSIREGFGLTVTEAXWKGKPVIGRAVGGIKFQIVDGETGFLVRD 365
Query: 334 NEEA 337
EA
Sbjct: 366 ANEA 369
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 275 AAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES 333
A +++ F+ +I S FG+ EAM+ +PVI GG K +VDG TGFL
Sbjct: 306 AREVNAFQRASDVILQMSIRAGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRD 365
Query: 334 NEEA 337
EA
Sbjct: 366 ANEA 369
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 21/162 (12%)
Query: 192 KEDIVFLSINRY-ERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYY 250
+E L + RY E +K + + + +L L +R D V++++ G D +
Sbjct: 206 REGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPD-----VEILIVGRGDEDELRE---- 256
Query: 251 XXXXXXXXXXXXSDNVLFLTSPSDAAKISLFKFC--HCIIYTPSNEHFGIVPIEAMFCKR 308
+ ++ FL DA K S + +C + E FGIV +EAM
Sbjct: 257 -------QAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHL-GGESFGIVLVEAMAAGT 308
Query: 309 PVIAVNSGGPKESVVDGRTGFLCESNE-EAFAKAMKKIVDND 349
V+A + + + DG G L ++ + A A+ I+++D
Sbjct: 309 AVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDD 350
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 294 EHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNE 335
E GIV +EA C PVIA SGG E+V TG + E ++
Sbjct: 290 EGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSD 330
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 294 EHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNE 335
E GIV +EA C PVIA SGG E+V TG + E ++
Sbjct: 290 EGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSD 330
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 287 IIYTPSN-EHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGF 329
++ PS E G++ ++ M P ++GG ++V++G+TGF
Sbjct: 404 VLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGF 447
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,204,048
Number of Sequences: 62578
Number of extensions: 447934
Number of successful extensions: 1163
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 17
length of query: 390
length of database: 14,973,337
effective HSP length: 101
effective length of query: 289
effective length of database: 8,652,959
effective search space: 2500705151
effective search space used: 2500705151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)