Query psy12587
Match_columns 390
No_of_seqs 367 out of 2065
Neff 11.1
Searched_HMMs 46136
Date Fri Aug 16 23:07:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03805 GT1_ALG2_like This fam 100.0 5.2E-49 1.1E-53 358.6 35.1 368 2-377 12-392 (392)
2 TIGR03449 mycothiol_MshA UDP-N 100.0 1.3E-46 2.8E-51 343.8 34.4 372 2-386 19-404 (405)
3 TIGR02472 sucr_P_syn_N sucrose 100.0 1.2E-45 2.6E-50 338.5 34.7 373 2-382 25-439 (439)
4 PRK15427 colanic acid biosynth 100.0 2.1E-45 4.5E-50 332.4 33.3 280 72-384 113-406 (406)
5 PRK10307 putative glycosyl tra 100.0 3.1E-45 6.7E-50 334.9 34.6 364 2-388 14-412 (412)
6 cd03796 GT1_PIG-A_like This fa 100.0 3.4E-45 7.3E-50 332.7 33.6 347 2-387 13-371 (398)
7 PLN02949 transferase, transfer 100.0 1.4E-44 3.1E-49 328.3 36.3 369 2-388 46-461 (463)
8 cd03806 GT1_ALG11_like This fa 100.0 6.1E-45 1.3E-49 330.7 33.5 358 2-375 13-418 (419)
9 TIGR02468 sucrsPsyn_pln sucros 100.0 2.8E-44 6E-49 342.3 35.3 377 2-388 194-675 (1050)
10 PRK15484 lipopolysaccharide 1, 100.0 7.2E-44 1.6E-48 320.6 34.4 345 1-385 19-379 (380)
11 TIGR03088 stp2 sugar transfera 100.0 5.1E-44 1.1E-48 323.4 32.5 349 2-385 13-374 (374)
12 PLN02939 transferase, transfer 100.0 5E-43 1.1E-47 328.8 36.9 297 75-388 609-971 (977)
13 PRK00654 glgA glycogen synthas 100.0 1.7E-43 3.7E-48 326.2 33.4 363 2-386 16-465 (466)
14 cd04962 GT1_like_5 This family 100.0 4.1E-43 8.8E-48 317.6 35.2 348 2-384 11-371 (371)
15 PLN02871 UDP-sulfoquinovose:DA 100.0 1E-43 2.2E-48 328.5 30.9 352 2-387 73-438 (465)
16 cd03800 GT1_Sucrose_synthase T 100.0 6.8E-43 1.5E-47 319.2 34.8 364 2-378 20-397 (398)
17 TIGR02149 glgA_Coryne glycogen 100.0 8.3E-43 1.8E-47 317.3 33.9 360 2-385 15-388 (388)
18 PLN02316 synthase/transferase 100.0 2E-42 4.4E-47 330.7 36.5 355 2-386 603-1036(1036)
19 cd03818 GT1_ExpC_like This fam 100.0 1.5E-41 3.2E-46 308.9 34.5 364 4-378 8-395 (396)
20 cd05844 GT1_like_7 Glycosyltra 100.0 4.3E-42 9.4E-47 310.4 30.5 279 72-379 77-366 (367)
21 TIGR02095 glgA glycogen/starch 100.0 9E-42 2E-46 316.4 33.1 362 2-384 16-473 (473)
22 PRK14099 glycogen synthase; Pr 100.0 1.9E-41 4.1E-46 311.2 33.3 292 75-388 132-483 (485)
23 TIGR02470 sucr_synth sucrose s 100.0 5.5E-41 1.2E-45 313.9 35.7 373 2-381 278-745 (784)
24 cd03816 GT1_ALG1_like This fam 100.0 3.6E-41 7.7E-46 306.5 32.3 352 3-376 14-409 (415)
25 cd03819 GT1_WavL_like This fam 100.0 6.3E-41 1.4E-45 301.5 30.8 330 2-372 9-354 (355)
26 cd03791 GT1_Glycogen_synthase_ 100.0 1.3E-40 2.9E-45 310.1 32.5 361 2-383 15-476 (476)
27 PRK14098 glycogen synthase; Pr 100.0 2E-40 4.4E-45 304.8 32.6 292 75-386 140-488 (489)
28 cd04955 GT1_like_6 This family 100.0 3E-40 6.4E-45 298.1 32.8 339 2-382 14-363 (363)
29 cd03813 GT1_like_3 This family 100.0 4.9E-41 1.1E-45 310.6 28.3 285 75-382 172-475 (475)
30 cd03792 GT1_Trehalose_phosphor 100.0 7.7E-41 1.7E-45 301.9 28.1 350 2-384 11-372 (372)
31 PRK15179 Vi polysaccharide bio 100.0 2.7E-40 6E-45 309.9 32.3 357 2-382 293-692 (694)
32 PLN00142 sucrose synthase 100.0 7.5E-40 1.6E-44 306.3 33.9 373 2-381 302-768 (815)
33 cd03799 GT1_amsK_like This is 100.0 9.3E-40 2E-44 293.9 32.6 331 2-376 10-354 (355)
34 cd03795 GT1_like_4 This family 100.0 5E-40 1.1E-44 295.9 30.6 332 2-374 13-357 (357)
35 PRK15490 Vi polysaccharide bio 100.0 5.3E-40 1.1E-44 294.1 28.8 288 71-383 274-575 (578)
36 cd03821 GT1_Bme6_like This fam 100.0 2.7E-39 6E-44 292.6 31.8 353 2-378 13-374 (375)
37 PRK10125 putative glycosyl tra 100.0 1.8E-39 3.8E-44 292.5 29.9 336 2-384 12-405 (405)
38 PRK09922 UDP-D-galactose:(gluc 100.0 1E-39 2.2E-44 292.7 27.8 329 2-386 13-358 (359)
39 cd03801 GT1_YqgM_like This fam 100.0 4E-39 8.7E-44 290.8 31.8 354 2-382 13-374 (374)
40 cd03817 GT1_UGDG_like This fam 100.0 4.1E-39 8.9E-44 291.4 31.9 351 2-383 13-373 (374)
41 cd03809 GT1_mtfB_like This fam 100.0 1.6E-39 3.5E-44 293.4 28.4 345 2-378 14-364 (365)
42 cd03807 GT1_WbnK_like This fam 100.0 8.3E-39 1.8E-43 288.4 31.5 340 2-382 11-365 (365)
43 cd03798 GT1_wlbH_like This fam 100.0 3E-38 6.4E-43 285.7 33.9 350 2-384 13-377 (377)
44 cd04951 GT1_WbdM_like This fam 100.0 2.4E-38 5.1E-43 285.4 32.7 338 2-383 11-360 (360)
45 cd03822 GT1_ecORF704_like This 100.0 2.6E-38 5.7E-43 285.6 32.9 336 2-382 12-366 (366)
46 cd03794 GT1_wbuB_like This fam 100.0 1.9E-38 4.2E-43 288.8 32.2 354 3-377 14-393 (394)
47 cd03802 GT1_AviGT4_like This f 100.0 1.7E-38 3.6E-43 283.4 30.8 314 2-382 18-335 (335)
48 cd03814 GT1_like_2 This family 100.0 1.8E-38 4E-43 286.3 30.0 341 2-382 13-364 (364)
49 cd03808 GT1_cap1E_like This fa 100.0 4.6E-38 1E-42 282.7 32.5 339 2-378 9-358 (359)
50 cd03812 GT1_CapH_like This fam 100.0 1.4E-38 3.1E-43 286.5 27.9 322 2-364 11-346 (358)
51 cd03820 GT1_amsD_like This fam 100.0 6.4E-38 1.4E-42 280.6 31.0 326 2-378 12-347 (348)
52 cd03825 GT1_wcfI_like This fam 100.0 1E-37 2.2E-42 281.8 30.6 322 2-384 12-365 (365)
53 KOG1111|consensus 100.0 4.3E-39 9.4E-44 265.0 19.0 345 2-388 14-371 (426)
54 TIGR02918 accessory Sec system 100.0 1.2E-37 2.5E-42 285.8 29.2 277 75-384 210-500 (500)
55 cd03823 GT1_ExpE7_like This fa 100.0 7.7E-37 1.7E-41 275.2 32.8 332 2-383 14-359 (359)
56 cd04946 GT1_AmsK_like This fam 100.0 9.9E-37 2.1E-41 276.7 31.0 272 75-378 126-406 (407)
57 PLN02275 transferase, transfer 100.0 1.4E-36 3.1E-41 272.7 29.1 318 3-346 15-371 (371)
58 cd03811 GT1_WabH_like This fam 100.0 1.6E-36 3.5E-41 272.0 29.4 329 2-369 11-352 (353)
59 TIGR03087 stp1 sugar transfera 100.0 4.5E-37 9.8E-42 279.4 26.0 284 71-383 98-396 (397)
60 PLN02846 digalactosyldiacylgly 100.0 1.3E-35 2.8E-40 265.4 30.6 269 72-382 111-390 (462)
61 cd03804 GT1_wbaZ_like This fam 100.0 3.1E-36 6.8E-41 270.2 26.9 257 75-377 82-350 (351)
62 PHA01630 putative group 1 glyc 100.0 1.4E-34 3E-39 252.9 28.6 237 97-383 70-330 (331)
63 cd04949 GT1_gtfA_like This fam 100.0 2.4E-34 5.1E-39 260.2 25.6 271 75-377 98-372 (372)
64 KOG0853|consensus 100.0 2.3E-33 5.1E-38 246.5 22.4 381 2-386 46-470 (495)
65 PLN02501 digalactosyldiacylgly 100.0 1.8E-32 3.8E-37 248.5 25.9 267 75-381 433-707 (794)
66 PHA01633 putative glycosyl tra 100.0 1.6E-30 3.5E-35 224.1 27.2 241 97-379 71-335 (335)
67 KOG1387|consensus 100.0 1.1E-28 2.5E-33 202.4 29.6 370 2-389 56-464 (465)
68 cd03788 GT1_TPS Trehalose-6-Ph 100.0 1.8E-29 4E-34 231.1 27.8 291 75-380 130-458 (460)
69 PRK00726 murG undecaprenyldiph 100.0 2E-29 4.4E-34 226.3 27.6 323 2-382 11-356 (357)
70 cd03793 GT1_Glycogen_synthase_ 100.0 9.4E-29 2E-33 222.1 29.7 305 75-387 147-590 (590)
71 TIGR02400 trehalose_OtsA alpha 100.0 1.5E-28 3.3E-33 223.0 29.7 291 75-382 126-455 (456)
72 cd03785 GT1_MurG MurG is an N- 100.0 1E-28 2.2E-33 221.5 26.8 317 2-375 9-349 (350)
73 cd04950 GT1_like_1 Glycosyltra 100.0 5.3E-28 1.2E-32 217.5 29.7 265 75-383 101-371 (373)
74 COG0297 GlgA Glycogen synthase 100.0 6.2E-27 1.3E-31 209.7 31.9 293 76-388 130-482 (487)
75 TIGR01133 murG undecaprenyldip 100.0 1.9E-27 4E-32 213.2 24.4 314 2-375 7-346 (348)
76 PRK05749 3-deoxy-D-manno-octul 100.0 3.8E-27 8.2E-32 216.2 25.4 331 3-387 60-423 (425)
77 PRK13609 diacylglycerol glucos 100.0 7.2E-27 1.6E-31 211.4 24.5 264 71-383 98-371 (380)
78 PRK13608 diacylglycerol glucos 100.0 5.5E-26 1.2E-30 205.2 25.4 269 71-387 98-375 (391)
79 PLN02605 monogalactosyldiacylg 99.9 1.6E-25 3.6E-30 201.9 27.5 264 71-382 94-380 (382)
80 PF00534 Glycos_transf_1: Glyc 99.9 2.1E-27 4.7E-32 190.5 13.4 160 190-363 11-172 (172)
81 PLN03063 alpha,alpha-trehalose 99.9 1.4E-25 3E-30 215.9 27.4 297 71-386 140-480 (797)
82 PRK14501 putative bifunctional 99.9 1.1E-24 2.3E-29 210.5 28.3 295 75-387 132-466 (726)
83 TIGR02398 gluc_glyc_Psyn gluco 99.9 1.4E-22 3E-27 182.8 30.5 292 75-383 131-482 (487)
84 cd01635 Glycosyltransferase_GT 99.9 7.2E-24 1.6E-28 178.3 21.1 120 199-331 109-229 (229)
85 PRK09814 beta-1,6-galactofuran 99.9 2.5E-23 5.3E-28 184.0 22.9 243 75-376 62-324 (333)
86 KOG2941|consensus 99.9 2.5E-21 5.3E-26 159.6 27.1 360 2-377 23-435 (444)
87 TIGR00236 wecB UDP-N-acetylglu 99.9 5.6E-22 1.2E-26 178.4 20.8 271 72-378 81-362 (365)
88 COG0438 RfaG Glycosyltransfera 99.9 7.1E-21 1.5E-25 171.0 27.7 229 135-387 150-380 (381)
89 PRK00025 lpxB lipid-A-disaccha 99.9 1.1E-21 2.4E-26 177.8 21.4 270 71-386 79-376 (380)
90 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 1.1E-20 2.5E-25 170.2 21.8 250 72-357 83-345 (363)
91 TIGR03713 acc_sec_asp1 accesso 99.9 6.9E-20 1.5E-24 168.5 20.7 218 133-381 270-519 (519)
92 PLN03064 alpha,alpha-trehalose 99.8 1.4E-18 3.1E-23 166.8 28.8 295 75-385 230-563 (934)
93 TIGR02094 more_P_ylases alpha- 99.8 4.5E-18 9.8E-23 158.4 29.3 302 75-381 160-598 (601)
94 TIGR00215 lpxB lipid-A-disacch 99.8 2.4E-18 5.1E-23 154.7 23.1 309 11-368 23-369 (385)
95 PF13692 Glyco_trans_1_4: Glyc 99.8 2.6E-19 5.6E-24 137.3 10.6 132 194-348 2-135 (135)
96 COG0707 MurG UDP-N-acetylgluco 99.7 2.4E-15 5.2E-20 131.7 26.8 321 2-379 10-353 (357)
97 PF00982 Glyco_transf_20: Glyc 99.7 5.6E-15 1.2E-19 134.2 27.1 297 71-382 134-473 (474)
98 PF05693 Glycogen_syn: Glycoge 99.7 6.7E-16 1.5E-20 138.9 20.0 305 79-387 146-585 (633)
99 PRK10117 trehalose-6-phosphate 99.7 9.2E-15 2E-19 131.0 27.2 295 75-386 122-456 (474)
100 cd04299 GT1_Glycogen_Phosphory 99.7 8E-15 1.7E-19 139.3 25.8 305 75-382 247-688 (778)
101 PLN02205 alpha,alpha-trehalose 99.7 6.1E-14 1.3E-18 135.9 28.8 301 71-386 193-554 (854)
102 PRK12446 undecaprenyldiphospho 99.7 3.6E-14 7.7E-19 125.9 25.1 293 2-350 11-327 (352)
103 COG0380 OtsA Trehalose-6-phosp 99.7 2.8E-13 6.1E-18 120.9 28.7 297 71-383 140-479 (486)
104 TIGR02919 accessory Sec system 99.7 4.1E-14 8.9E-19 127.4 23.0 192 134-371 238-432 (438)
105 TIGR03492 conserved hypothetic 99.7 1.2E-13 2.7E-18 124.3 25.9 268 76-378 93-393 (396)
106 PF13439 Glyco_transf_4: Glyco 99.6 1.3E-15 2.9E-20 122.5 10.1 164 2-175 11-177 (177)
107 PF13524 Glyco_trans_1_2: Glyc 99.6 2.5E-15 5.5E-20 106.4 8.2 92 286-379 1-92 (92)
108 PF13579 Glyco_trans_4_4: Glyc 99.6 3E-15 6.5E-20 118.3 8.3 149 3-168 1-160 (160)
109 COG1519 KdtA 3-deoxy-D-manno-o 99.5 4.1E-12 8.8E-17 109.9 23.0 271 75-382 122-416 (419)
110 PF13528 Glyco_trans_1_3: Glyc 99.4 2.4E-11 5.1E-16 107.5 19.3 282 4-345 13-317 (318)
111 TIGR03568 NeuC_NnaA UDP-N-acet 99.4 1.2E-10 2.6E-15 104.0 23.4 267 72-380 88-364 (365)
112 TIGR01426 MGT glycosyltransfer 99.4 1.9E-10 4.2E-15 104.7 24.1 111 262-381 273-390 (392)
113 COG4641 Uncharacterized protei 99.4 8.4E-11 1.8E-15 100.2 19.3 216 137-385 140-363 (373)
114 PF02684 LpxB: Lipid-A-disacch 99.4 1.9E-10 4.2E-15 101.1 21.3 302 6-355 11-346 (373)
115 PF02350 Epimerase_2: UDP-N-ac 99.4 2.3E-11 4.9E-16 107.5 15.0 267 75-381 66-345 (346)
116 PF09314 DUF1972: Domain of un 99.3 4.4E-11 9.6E-16 93.8 13.6 158 2-170 16-185 (185)
117 cd03784 GT1_Gtf_like This fami 99.3 3.4E-10 7.4E-15 103.5 21.5 134 192-360 238-382 (401)
118 COG0381 WecB UDP-N-acetylgluco 99.3 4.8E-09 1E-13 90.5 23.0 281 61-382 77-369 (383)
119 PRK02797 4-alpha-L-fucosyltran 99.2 1.4E-08 3.1E-13 84.8 24.5 271 75-387 38-320 (322)
120 TIGR00661 MJ1255 conserved hyp 99.2 3.8E-09 8.3E-14 93.2 22.5 82 263-350 228-316 (321)
121 TIGR03590 PseG pseudaminic aci 99.2 9.2E-10 2E-14 94.6 17.6 244 2-316 13-269 (279)
122 PF13844 Glyco_transf_41: Glyc 99.2 1.4E-09 3E-14 97.6 16.6 186 180-384 273-467 (468)
123 COG0763 LpxB Lipid A disacchar 99.2 3.7E-09 8.1E-14 90.9 18.0 242 75-359 84-354 (381)
124 COG3914 Spy Predicted O-linked 99.1 1.6E-08 3.4E-13 90.7 21.4 272 75-387 334-617 (620)
125 PF07429 Glyco_transf_56: 4-al 99.1 8.6E-08 1.9E-12 81.4 24.2 269 75-384 77-356 (360)
126 PRK01021 lpxB lipid-A-disaccha 99.1 2E-08 4.4E-13 92.4 21.8 243 75-363 309-585 (608)
127 PF04007 DUF354: Protein of un 99.1 2.2E-08 4.8E-13 87.0 20.7 277 8-347 15-309 (335)
128 COG1819 Glycosyl transferases, 98.9 1.9E-07 4.1E-12 84.5 18.9 160 190-382 234-400 (406)
129 PF13477 Glyco_trans_4_2: Glyc 98.8 4.9E-08 1.1E-12 74.9 10.1 121 5-143 9-139 (139)
130 PF08323 Glyco_transf_5: Starc 98.8 2.6E-08 5.6E-13 83.8 8.8 79 75-154 132-234 (245)
131 COG1817 Uncharacterized protei 98.7 6E-06 1.3E-10 68.9 20.0 284 7-350 14-316 (346)
132 COG4671 Predicted glycosyl tra 98.6 5.6E-06 1.2E-10 70.3 17.5 310 4-349 23-366 (400)
133 PRK10017 colanic acid biosynth 98.6 0.00034 7.5E-09 63.7 29.7 255 75-358 116-402 (426)
134 PLN02448 UDP-glycosyltransfera 98.6 0.00016 3.5E-09 67.0 28.2 92 264-361 323-428 (459)
135 KOG3742|consensus 98.6 4.2E-06 9.2E-11 72.9 15.2 251 127-382 244-611 (692)
136 PHA03392 egt ecdysteroid UDP-g 98.5 5E-06 1.1E-10 77.6 17.0 110 262-379 344-462 (507)
137 PRK14089 ipid-A-disaccharide s 98.5 7.2E-06 1.6E-10 72.2 16.1 179 75-314 75-261 (347)
138 PF04464 Glyphos_transf: CDP-G 98.5 9.8E-06 2.1E-10 73.2 17.2 271 75-381 77-367 (369)
139 PLN02208 glycosyltransferase f 98.5 0.001 2.2E-08 61.1 30.5 231 132-381 190-437 (442)
140 PF12000 Glyco_trans_4_3: Gkyc 98.2 1.8E-05 3.9E-10 61.6 10.8 96 75-174 65-170 (171)
141 COG0058 GlgP Glucan phosphoryl 98.2 6.9E-05 1.5E-09 71.0 16.4 143 193-335 486-632 (750)
142 COG3980 spsG Spore coat polysa 98.1 7.1E-05 1.5E-09 61.8 12.3 134 196-359 161-303 (318)
143 PLN03007 UDP-glucosyltransfera 98.0 0.011 2.5E-07 55.2 30.7 82 263-349 344-441 (482)
144 PF04101 Glyco_tran_28_C: Glyc 98.0 1.6E-07 3.6E-12 74.4 -4.4 89 264-359 55-154 (167)
145 PF11440 AGT: DNA alpha-glucos 98.0 0.00075 1.6E-08 55.6 15.5 295 4-348 2-353 (355)
146 KOG1050|consensus 97.9 0.0056 1.2E-07 59.1 22.0 295 71-379 133-470 (732)
147 PLN02210 UDP-glucosyl transfer 97.9 0.024 5.2E-07 52.5 31.4 81 264-349 324-416 (456)
148 COG3660 Predicted nucleoside-d 97.8 0.007 1.5E-07 49.7 18.6 193 75-316 69-274 (329)
149 PLN00414 glycosyltransferase f 97.8 0.0041 8.9E-08 57.3 19.0 213 133-363 190-417 (446)
150 PLN02670 transferase, transfer 97.8 0.00072 1.6E-08 62.4 14.0 116 265-385 340-467 (472)
151 PLN02410 UDP-glucoronosyl/UDP- 97.8 0.0067 1.4E-07 56.0 20.2 82 263-349 323-411 (451)
152 PLN02764 glycosyltransferase f 97.8 0.0059 1.3E-07 56.1 19.7 238 133-388 197-450 (453)
153 PRK14986 glycogen phosphorylas 97.6 0.00076 1.6E-08 65.1 11.8 148 193-341 542-703 (815)
154 PF00201 UDPGT: UDP-glucoronos 97.6 0.00024 5.2E-09 67.2 8.1 158 192-379 275-439 (500)
155 PLN02562 UDP-glycosyltransfera 97.5 0.0049 1.1E-07 57.0 15.4 88 263-356 327-420 (448)
156 PF00343 Phosphorylase: Carboh 97.5 0.014 3E-07 55.9 18.2 207 130-338 326-601 (713)
157 KOG4626|consensus 97.5 0.0058 1.2E-07 56.4 14.6 182 189-387 755-944 (966)
158 cd04300 GT1_Glycogen_Phosphory 97.4 0.0024 5.1E-08 61.8 11.8 148 193-341 529-690 (797)
159 PLN02207 UDP-glycosyltransfera 97.3 0.03 6.5E-07 51.9 18.0 193 133-347 209-425 (468)
160 PF06258 Mito_fiss_Elm1: Mitoc 97.3 0.011 2.5E-07 51.5 14.0 191 75-317 56-259 (311)
161 cd03789 GT1_LPS_heptosyltransf 97.2 0.043 9.2E-07 47.5 17.1 87 208-314 138-224 (279)
162 PLN03004 UDP-glycosyltransfera 97.2 0.011 2.5E-07 54.4 13.3 82 264-350 334-426 (451)
163 PLN02167 UDP-glycosyltransfera 97.1 0.021 4.5E-07 53.4 15.0 80 264-350 340-436 (475)
164 PLN02863 UDP-glucoronosyl/UDP- 97.1 0.05 1.1E-06 50.8 16.7 77 264-347 343-432 (477)
165 PLN02992 coniferyl-alcohol glu 97.1 0.012 2.6E-07 54.6 12.6 81 264-349 338-428 (481)
166 PLN00164 glucosyltransferase; 97.0 0.036 7.8E-07 51.8 15.7 92 265-361 340-444 (480)
167 TIGR02093 P_ylase glycogen/sta 97.0 0.0043 9.3E-08 59.9 9.6 148 193-341 526-687 (794)
168 PRK14985 maltodextrin phosphor 97.0 0.0034 7.3E-08 60.5 8.8 148 193-341 528-689 (798)
169 PLN02173 UDP-glucosyl transfer 97.0 0.03 6.6E-07 51.6 14.6 93 263-362 316-420 (449)
170 PLN02554 UDP-glycosyltransfera 97.0 0.04 8.6E-07 51.6 15.3 79 264-347 342-439 (481)
171 PLN02152 indole-3-acetate beta 97.0 0.023 4.9E-07 52.5 13.4 83 263-350 326-419 (455)
172 PF15024 Glyco_transf_18: Glyc 96.9 0.025 5.5E-07 52.2 13.2 152 193-383 277-455 (559)
173 PF10933 DUF2827: Protein of u 96.9 0.21 4.6E-06 43.6 17.8 267 75-371 72-351 (364)
174 COG2327 WcaK Polysaccharide py 96.8 0.33 7.2E-06 43.2 26.7 245 75-355 88-357 (385)
175 PLN03015 UDP-glucosyl transfer 96.8 0.097 2.1E-06 48.5 16.2 77 266-347 337-425 (470)
176 PF06925 MGDG_synth: Monogalac 96.8 0.015 3.2E-07 46.0 9.6 80 70-169 82-169 (169)
177 TIGR03609 S_layer_CsaB polysac 96.7 0.31 6.6E-06 42.7 18.3 178 94-314 97-276 (298)
178 PLN02555 limonoid glucosyltran 96.7 0.12 2.5E-06 48.3 16.0 91 263-362 336-441 (480)
179 TIGR02193 heptsyl_trn_I lipopo 96.5 0.066 1.4E-06 47.3 12.6 132 193-346 179-319 (319)
180 PF04230 PS_pyruv_trans: Polys 96.4 0.53 1.1E-05 40.4 18.2 185 96-315 99-284 (286)
181 PF00862 Sucrose_synth: Sucros 96.3 0.013 2.8E-07 53.1 6.9 93 56-148 378-481 (550)
182 TIGR02195 heptsyl_trn_II lipop 96.3 0.041 8.8E-07 49.1 10.1 100 192-312 173-275 (334)
183 PRK10964 ADP-heptose:LPS hepto 96.0 0.2 4.4E-06 44.3 13.0 98 193-312 178-277 (322)
184 PRK10422 lipopolysaccharide co 95.9 0.074 1.6E-06 47.8 9.8 103 193-313 183-287 (352)
185 PLN02534 UDP-glycosyltransfera 95.7 0.44 9.5E-06 44.7 14.3 80 263-347 343-443 (491)
186 PF01075 Glyco_transf_9: Glyco 95.7 0.046 9.9E-07 46.3 7.4 103 192-313 104-208 (247)
187 PF08660 Alg14: Oligosaccharid 95.6 0.14 3E-06 40.4 9.2 80 56-150 73-161 (170)
188 TIGR02201 heptsyl_trn_III lipo 95.5 0.16 3.5E-06 45.4 10.5 103 193-313 181-285 (344)
189 COG0859 RfaF ADP-heptose:LPS h 95.2 0.16 3.5E-06 45.2 9.4 100 193-314 175-277 (334)
190 COG1887 TagB Putative glycosyl 95.1 2 4.3E-05 39.0 16.1 221 133-381 146-384 (388)
191 PF05159 Capsule_synth: Capsul 95.1 0.24 5.1E-06 42.6 10.0 104 193-316 116-227 (269)
192 KOG1192|consensus 95.1 0.67 1.5E-05 43.9 13.9 93 264-361 335-434 (496)
193 PRK10916 ADP-heptose:LPS hepto 94.8 0.28 6.2E-06 43.9 10.0 101 192-312 179-285 (348)
194 PF10087 DUF2325: Uncharacteri 94.7 0.055 1.2E-06 38.2 4.1 81 233-321 2-89 (97)
195 PF08288 PIGA: PIGA (GPI ancho 94.2 0.2 4.4E-06 33.8 5.6 66 34-106 13-85 (90)
196 PF03016 Exostosin: Exostosin 94.0 0.084 1.8E-06 46.3 4.8 68 275-342 228-299 (302)
197 PF11997 DUF3492: Domain of un 93.5 0.39 8.4E-06 41.1 7.7 75 75-149 171-259 (268)
198 PF04413 Glycos_transf_N: 3-De 93.0 0.66 1.4E-05 37.2 7.8 84 75-168 94-180 (186)
199 PF12038 DUF3524: Domain of un 92.9 0.52 1.1E-05 36.4 6.6 77 75-154 58-138 (168)
200 PF11071 DUF2872: Protein of u 92.8 0.45 9.7E-06 34.6 5.8 96 248-346 9-140 (141)
201 KOG1021|consensus 91.7 3.9 8.5E-05 38.2 12.3 92 275-368 335-430 (464)
202 TIGR03646 YtoQ_fam YtoQ family 91.6 0.93 2E-05 33.1 6.2 96 248-346 12-143 (144)
203 KOG0780|consensus 89.2 16 0.00035 32.8 13.4 170 196-382 156-341 (483)
204 COG4370 Uncharacterized protei 87.0 5.8 0.00012 34.1 8.5 205 130-365 173-395 (412)
205 smart00672 CAP10 Putative lipo 85.1 9.1 0.0002 32.5 9.1 88 296-384 157-249 (256)
206 COG5017 Uncharacterized conser 83.2 15 0.00032 27.5 8.1 56 265-324 47-103 (161)
207 KOG3349|consensus 83.1 5.9 0.00013 30.1 6.2 99 194-315 4-108 (170)
208 PF12996 DUF3880: DUF based on 82.4 4.4 9.6E-05 27.2 5.0 65 131-205 14-78 (79)
209 PF05686 Glyco_transf_90: Glyc 82.2 7.3 0.00016 35.6 7.9 85 299-384 229-318 (395)
210 PRK00676 hemA glutamyl-tRNA re 81.6 38 0.00082 30.1 12.0 136 230-386 174-321 (338)
211 PF01113 DapB_N: Dihydrodipico 80.0 0.74 1.6E-05 34.1 0.7 45 275-319 59-103 (124)
212 COG3613 Nucleoside 2-deoxyribo 78.8 12 0.00025 29.3 6.7 83 231-315 5-106 (172)
213 PRK04531 acetylglutamate kinas 78.0 13 0.00028 33.9 8.0 68 194-279 37-105 (398)
214 PRK13398 3-deoxy-7-phosphohept 76.7 48 0.001 28.4 11.1 107 197-315 29-142 (266)
215 PRK13397 3-deoxy-7-phosphohept 76.3 46 0.001 28.1 10.3 98 207-315 26-130 (250)
216 PRK05395 3-dehydroquinate dehy 76.3 6.8 0.00015 29.7 4.7 97 248-346 30-140 (146)
217 PF03033 Glyco_transf_28: Glyc 75.4 3.6 7.8E-05 31.0 3.4 42 3-44 9-53 (139)
218 cd01971 Nitrogenase_VnfN_like 74.7 69 0.0015 29.7 12.1 173 133-314 61-238 (427)
219 COG1703 ArgK Putative periplas 74.4 57 0.0012 28.4 10.2 91 4-105 63-175 (323)
220 TIGR01088 aroQ 3-dehydroquinat 72.6 12 0.00026 28.2 5.2 97 248-346 28-138 (141)
221 KOG0832|consensus 71.8 29 0.00063 28.5 7.5 51 261-322 161-212 (251)
222 TIGR01278 DPOR_BchB light-inde 71.0 99 0.0022 29.5 12.9 78 231-312 159-238 (511)
223 PRK02910 light-independent pro 70.4 1E+02 0.0022 29.5 12.9 78 231-312 159-238 (519)
224 PRK07742 phosphate butyryltran 70.3 75 0.0016 27.8 11.2 78 193-292 14-99 (299)
225 COG0373 HemA Glutamyl-tRNA red 70.1 90 0.002 28.7 15.7 106 215-344 193-303 (414)
226 PRK05447 1-deoxy-D-xylulose 5- 70.0 21 0.00046 32.2 7.2 40 276-315 82-123 (385)
227 cd01967 Nitrogenase_MoFe_alpha 70.0 91 0.002 28.7 14.4 188 133-348 62-258 (406)
228 cd01972 Nitrogenase_VnfE_like 68.9 99 0.0022 28.7 14.1 173 133-314 64-244 (426)
229 TIGR02069 cyanophycinase cyano 68.3 74 0.0016 27.0 10.0 101 208-318 12-127 (250)
230 PRK13015 3-dehydroquinate dehy 68.3 13 0.00029 28.1 4.7 97 248-346 30-140 (146)
231 cd03146 GAT1_Peptidase_E Type 68.1 64 0.0014 26.5 9.3 97 208-316 16-123 (212)
232 PF05014 Nuc_deoxyrib_tr: Nucl 67.9 17 0.00036 26.3 5.2 38 278-315 56-97 (113)
233 PF00852 Glyco_transf_10: Glyc 67.8 28 0.00061 31.2 7.7 88 266-355 204-304 (349)
234 PF00185 OTCace: Aspartate/orn 67.8 29 0.00063 27.0 6.9 82 194-293 2-83 (158)
235 TIGR00715 precor6x_red precorr 67.2 79 0.0017 26.9 17.4 119 195-346 131-255 (256)
236 PF10093 DUF2331: Uncharacteri 66.4 51 0.0011 29.7 8.7 85 208-315 196-290 (374)
237 cd01020 TroA_b Metal binding p 65.6 85 0.0018 26.8 9.9 84 278-364 47-134 (264)
238 cd00466 DHQase_II Dehydroquina 65.2 15 0.00032 27.7 4.4 97 248-346 28-138 (140)
239 PF10649 DUF2478: Protein of u 65.0 11 0.00025 29.1 4.0 39 278-316 87-132 (159)
240 PRK10840 transcriptional regul 63.9 79 0.0017 25.8 10.2 110 230-349 3-127 (216)
241 COG0036 Rpe Pentose-5-phosphat 63.0 58 0.0013 26.8 7.7 76 207-298 71-146 (220)
242 TIGR00460 fmt methionyl-tRNA f 62.2 68 0.0015 28.3 8.8 39 251-291 46-86 (313)
243 PF08902 DUF1848: Domain of un 61.1 1E+02 0.0022 26.3 9.2 109 133-268 5-116 (266)
244 PRK12595 bifunctional 3-deoxy- 60.0 1.3E+02 0.0029 27.1 11.7 97 208-315 130-233 (360)
245 cd03129 GAT1_Peptidase_E_like 59.8 81 0.0017 25.8 8.5 82 231-316 30-123 (210)
246 TIGR03682 arCOG04112 arCOG0411 59.7 23 0.00049 31.1 5.4 76 232-314 215-290 (308)
247 PRK13940 glutamyl-tRNA reducta 59.1 1.5E+02 0.0033 27.4 13.0 94 231-343 206-301 (414)
248 cd03145 GAT1_cyanophycinase Ty 58.5 1E+02 0.0023 25.4 9.4 82 231-316 30-126 (217)
249 COG1927 Mtd Coenzyme F420-depe 58.2 1E+02 0.0022 25.1 12.7 106 196-332 6-115 (277)
250 cd05565 PTS_IIB_lactose PTS_II 57.5 25 0.00054 24.8 4.3 75 233-315 4-80 (99)
251 PRK00005 fmt methionyl-tRNA fo 57.0 77 0.0017 27.9 8.3 38 251-290 46-85 (309)
252 PRK13761 hypothetical protein; 56.9 1.1E+02 0.0024 25.2 9.2 95 281-385 148-243 (248)
253 PF13407 Peripla_BP_4: Peripla 56.6 1E+02 0.0023 25.7 9.0 34 283-316 55-89 (257)
254 cd03174 DRE_TIM_metallolyase D 56.1 1.3E+02 0.0027 25.6 11.6 120 208-345 113-245 (265)
255 PF01220 DHquinase_II: Dehydro 54.9 42 0.0009 25.4 5.3 64 248-313 29-98 (140)
256 COG1618 Predicted nucleotide k 54.9 29 0.00062 27.1 4.5 73 276-348 93-177 (179)
257 COG5148 RPN10 26S proteasome r 54.8 1.1E+02 0.0023 24.4 7.7 39 195-239 109-147 (243)
258 PRK04020 rps2P 30S ribosomal p 54.1 76 0.0016 25.9 7.1 145 206-378 49-199 (204)
259 KOG2264|consensus 53.8 88 0.0019 29.6 8.1 113 266-383 401-524 (907)
260 PF00389 2-Hacid_dh: D-isomer 53.5 91 0.002 23.2 12.7 87 251-342 9-101 (133)
261 PF00290 Trp_syntA: Tryptophan 53.4 1.4E+02 0.0031 25.4 10.3 119 205-344 100-235 (259)
262 PRK05562 precorrin-2 dehydroge 52.1 1.4E+02 0.003 24.9 12.3 134 209-366 34-179 (223)
263 PF00205 TPP_enzyme_M: Thiamin 51.8 31 0.00068 25.8 4.5 25 266-290 60-84 (137)
264 TIGR02990 ectoine_eutA ectoine 51.7 95 0.0021 26.2 7.6 79 232-318 122-217 (239)
265 COG3580 Uncharacterized protei 51.6 1.7E+02 0.0036 25.6 10.7 62 251-314 58-120 (351)
266 PLN02331 phosphoribosylglycina 51.2 1.4E+02 0.003 24.6 8.7 92 251-345 68-176 (207)
267 TIGR01361 DAHP_synth_Bsub phos 50.9 1.6E+02 0.0034 25.2 9.6 102 203-315 32-140 (260)
268 cd05312 NAD_bind_1_malic_enz N 50.9 84 0.0018 27.1 7.2 29 277-305 97-128 (279)
269 PLN02929 NADH kinase 50.6 49 0.0011 28.9 5.8 70 279-349 60-138 (301)
270 cd07944 DRE_TIM_HOA_like 4-hyd 49.8 1.7E+02 0.0036 25.1 14.8 125 205-347 104-240 (266)
271 PF02606 LpxK: Tetraacyldisacc 49.7 1.3E+02 0.0028 26.8 8.4 25 2-26 45-72 (326)
272 TIGR01283 nifE nitrogenase mol 49.5 2.3E+02 0.005 26.6 15.9 188 133-348 96-295 (456)
273 cd00789 KU_like Ku-core domain 49.5 40 0.00087 28.7 5.1 126 263-388 86-222 (256)
274 PRK11858 aksA trans-homoaconit 49.4 1.8E+02 0.0038 26.6 9.5 101 208-320 114-226 (378)
275 PRK03094 hypothetical protein; 48.9 9.9 0.00022 25.4 1.1 22 4-25 5-27 (80)
276 PF09949 DUF2183: Uncharacteri 48.7 57 0.0012 23.1 5.0 42 213-267 52-93 (100)
277 TIGR00853 pts-lac PTS system, 48.7 57 0.0012 22.8 5.0 79 232-318 6-86 (95)
278 COG0757 AroQ 3-dehydroquinate 48.3 72 0.0016 24.0 5.5 60 251-312 32-97 (146)
279 TIGR00272 DPH2 diphthamide bio 47.9 88 0.0019 29.7 7.5 77 231-313 283-359 (496)
280 PF03435 Saccharop_dh: Sacchar 47.9 49 0.0011 30.1 5.9 70 232-313 25-97 (386)
281 PRK06988 putative formyltransf 47.5 2E+02 0.0043 25.4 9.5 39 251-291 45-85 (312)
282 cd01408 SIRT1 SIRT1: Eukaryoti 47.2 1.2E+02 0.0025 25.5 7.5 76 263-339 151-232 (235)
283 CHL00200 trpA tryptophan synth 47.1 1.7E+02 0.0037 25.1 8.5 117 205-342 104-238 (263)
284 COG0223 Fmt Methionyl-tRNA for 46.6 1.6E+02 0.0035 25.9 8.3 104 196-312 3-108 (307)
285 PRK10834 vancomycin high tempe 46.2 1.4E+02 0.0031 25.0 7.7 93 213-314 70-168 (239)
286 PF01012 ETF: Electron transfe 46.1 41 0.00089 26.2 4.5 93 209-313 17-120 (164)
287 PTZ00182 3-methyl-2-oxobutanat 46.1 1.4E+02 0.0031 26.9 8.3 76 267-345 268-354 (355)
288 PF01297 TroA: Periplasmic sol 45.8 74 0.0016 27.0 6.3 86 278-364 42-131 (256)
289 cd01016 TroA Metal binding pro 45.6 1.4E+02 0.0031 25.7 8.0 86 278-364 45-140 (276)
290 PRK10017 colanic acid biosynth 45.4 2.5E+02 0.0054 26.1 10.0 42 197-243 3-46 (426)
291 TIGR02772 Ku_bact Ku protein, 45.3 32 0.0007 29.3 3.9 123 263-388 87-223 (258)
292 TIGR03609 S_layer_CsaB polysac 45.2 2.1E+02 0.0045 24.9 11.1 94 196-315 3-107 (298)
293 cd05564 PTS_IIB_chitobiose_lic 44.6 89 0.0019 21.8 5.5 76 233-316 3-80 (96)
294 PTZ00408 NAD-dependent deacety 44.4 1.9E+02 0.0042 24.4 9.0 55 263-317 150-209 (242)
295 PF01531 Glyco_transf_11: Glyc 44.0 1.7E+02 0.0038 25.5 8.4 65 208-290 189-254 (298)
296 PF04392 ABC_sub_bind: ABC tra 43.8 2.2E+02 0.0047 24.7 13.2 181 133-347 57-250 (294)
297 cd00316 Oxidoreductase_nitroge 43.8 2.6E+02 0.0055 25.6 11.1 171 133-314 55-231 (399)
298 PRK12862 malic enzyme; Reviewe 43.3 1.7E+02 0.0036 29.7 8.9 87 212-312 180-289 (763)
299 PRK10360 DNA-binding transcrip 42.9 1.6E+02 0.0036 23.1 10.7 74 275-348 37-118 (196)
300 PRK14138 NAD-dependent deacety 42.6 2E+02 0.0044 24.2 8.3 80 263-345 154-240 (244)
301 PF14359 DUF4406: Domain of un 42.6 48 0.001 23.0 3.8 34 278-311 54-90 (92)
302 PF02639 DUF188: Uncharacteriz 42.5 18 0.00038 27.1 1.7 94 285-386 30-129 (130)
303 PRK05282 (alpha)-aspartyl dipe 42.5 2.1E+02 0.0044 24.1 10.7 110 196-317 4-123 (233)
304 PF02826 2-Hacid_dh_C: D-isome 42.4 92 0.002 24.7 6.0 41 276-316 84-129 (178)
305 cd01019 ZnuA Zinc binding prot 42.2 1.9E+02 0.0041 25.1 8.3 85 278-364 47-160 (286)
306 COG3958 Transketolase, C-termi 42.2 2.2E+02 0.0049 24.7 8.2 115 191-345 191-311 (312)
307 PF14386 DUF4417: Domain of un 42.0 94 0.002 25.3 5.9 47 189-240 132-178 (200)
308 PF03698 UPF0180: Uncharacteri 41.7 16 0.00035 24.5 1.3 22 4-25 5-27 (80)
309 PF13263 PHP_C: PHP-associated 41.6 14 0.0003 22.7 0.9 41 303-343 11-52 (56)
310 PF03575 Peptidase_S51: Peptid 41.6 24 0.00052 27.2 2.5 66 249-316 1-78 (154)
311 KOG2619|consensus 41.5 53 0.0012 29.6 4.8 78 276-356 243-326 (372)
312 PRK13396 3-deoxy-7-phosphohept 41.4 2.7E+02 0.0058 25.1 11.7 108 196-315 102-216 (352)
313 PRK12330 oxaloacetate decarbox 41.4 3.2E+02 0.007 26.0 11.9 123 202-345 119-255 (499)
314 PLN02683 pyruvate dehydrogenas 40.7 1.6E+02 0.0035 26.6 7.8 73 270-347 266-351 (356)
315 CHL00144 odpB pyruvate dehydro 40.5 1.4E+02 0.0031 26.5 7.4 77 271-349 240-326 (327)
316 PRK00048 dihydrodipicolinate r 40.5 54 0.0012 28.0 4.6 41 276-316 53-93 (257)
317 cd01976 Nitrogenase_MoFe_alpha 40.1 3.1E+02 0.0067 25.5 10.9 171 133-314 73-250 (421)
318 CHL00076 chlB photochlorophyll 40.0 3.5E+02 0.0075 26.0 14.2 79 231-313 164-244 (513)
319 COG2204 AtoC Response regulato 39.9 1.8E+02 0.0038 27.4 8.0 96 251-350 18-124 (464)
320 COG0803 LraI ABC-type metal io 39.7 2.2E+02 0.0049 24.9 8.4 87 278-365 76-173 (303)
321 PRK06719 precorrin-2 dehydroge 39.6 1.8E+02 0.0039 22.6 8.1 68 280-347 67-141 (157)
322 COG1692 Calcineurin-like phosp 39.5 2.3E+02 0.0051 23.9 8.7 110 196-317 2-117 (266)
323 KOG2741|consensus 39.4 1.8E+02 0.0039 25.9 7.5 95 193-312 5-101 (351)
324 PLN02285 methionyl-tRNA formyl 39.1 2E+02 0.0043 25.7 8.1 40 252-291 59-101 (334)
325 cd01965 Nitrogenase_MoFe_beta_ 39.1 3.2E+02 0.007 25.4 12.6 172 133-314 56-252 (428)
326 TIGR02090 LEU1_arch isopropylm 39.1 3E+02 0.0065 25.0 9.4 100 209-320 111-222 (363)
327 COG0159 TrpA Tryptophan syntha 39.0 2.3E+02 0.0051 24.2 7.9 80 193-289 95-175 (265)
328 cd01979 Pchlide_reductase_N Pc 38.5 3.2E+02 0.0069 25.1 12.3 95 206-314 134-230 (396)
329 cd01973 Nitrogenase_VFe_beta_l 38.2 3.5E+02 0.0075 25.5 11.2 169 133-314 61-257 (454)
330 TIGR03569 NeuB_NnaB N-acetylne 37.7 1.7E+02 0.0037 26.1 7.3 60 251-315 79-141 (329)
331 COG4565 CitB Response regulato 37.7 1.6E+02 0.0035 24.2 6.5 73 275-347 36-119 (224)
332 PF11238 DUF3039: Protein of u 37.7 23 0.00049 21.9 1.3 15 299-313 16-30 (58)
333 cd01017 AdcA Metal binding pro 37.6 2.1E+02 0.0045 24.7 7.9 85 278-364 47-152 (282)
334 TIGR00640 acid_CoA_mut_C methy 37.5 1.8E+02 0.0038 21.9 6.7 96 160-282 29-124 (132)
335 COG1519 KdtA 3-deoxy-D-manno-o 37.1 3.4E+02 0.0074 25.1 10.1 103 193-314 49-153 (419)
336 TIGR02853 spore_dpaA dipicolin 37.0 2.3E+02 0.0049 24.7 7.9 24 1-25 6-30 (287)
337 COG4394 Uncharacterized protei 37.0 1.6E+02 0.0035 25.5 6.6 46 265-315 239-284 (370)
338 TIGR00730 conserved hypothetic 36.8 1.6E+02 0.0035 23.4 6.4 39 278-318 91-137 (178)
339 PRK09545 znuA high-affinity zi 36.6 2.4E+02 0.0052 24.9 8.2 37 327-364 145-184 (311)
340 PRK08410 2-hydroxyacid dehydro 36.5 1.4E+02 0.003 26.4 6.6 41 276-316 189-234 (311)
341 cd01018 ZntC Metal binding pro 36.4 2.1E+02 0.0046 24.4 7.7 37 327-364 112-151 (266)
342 TIGR03837 efp_adjacent_2 conse 36.0 3.3E+02 0.0071 24.7 8.6 88 205-315 191-288 (371)
343 PRK06932 glycerate dehydrogena 36.0 1.3E+02 0.0027 26.7 6.3 43 276-318 190-237 (314)
344 PLN02825 amino-acid N-acetyltr 36.0 2.1E+02 0.0045 27.4 8.0 69 192-277 17-85 (515)
345 PRK05331 putative phosphate ac 35.9 3.2E+02 0.007 24.4 12.0 53 202-270 8-61 (334)
346 cd01968 Nitrogenase_NifE_I Nit 35.6 3.6E+02 0.0078 24.9 10.9 166 133-312 61-234 (410)
347 COG0111 SerA Phosphoglycerate 35.4 1.3E+02 0.0029 26.7 6.3 37 275-311 189-230 (324)
348 cd01409 SIRT4 SIRT4: Eukaryoti 35.3 1.1E+02 0.0024 26.1 5.7 55 263-317 180-241 (260)
349 cd01410 SIRT7 SIRT7: Eukaryoti 35.3 1.1E+02 0.0023 25.1 5.4 54 263-316 131-191 (206)
350 PF01408 GFO_IDH_MocA: Oxidore 35.2 1.7E+02 0.0036 21.0 7.2 55 251-314 37-93 (120)
351 PF03949 Malic_M: Malic enzyme 35.0 2.4E+02 0.0053 24.0 7.4 92 212-312 12-138 (255)
352 PF00201 UDPGT: UDP-glucoronos 34.8 20 0.00044 33.9 1.4 23 3-25 10-33 (500)
353 PRK05380 pyrG CTP synthetase; 34.3 3.6E+02 0.0078 25.9 9.1 87 230-316 288-381 (533)
354 COG1273 Ku-homolog [Replicatio 34.3 73 0.0016 27.0 4.2 134 251-388 79-225 (278)
355 PRK08883 ribulose-phosphate 3- 34.3 2.2E+02 0.0048 23.6 7.1 76 207-298 68-143 (220)
356 KOG2648|consensus 34.3 1.8E+02 0.004 26.9 6.9 58 231-291 268-325 (453)
357 cd00762 NAD_bind_malic_enz NAD 34.1 2.4E+02 0.0051 24.1 7.2 37 276-312 97-138 (254)
358 PHA03392 egt ecdysteroid UDP-g 34.0 25 0.00055 33.4 1.8 18 8-25 37-55 (507)
359 TIGR00322 diphth2_R diphthamid 33.7 2.2E+02 0.0047 25.5 7.4 77 232-314 235-311 (332)
360 TIGR00288 conserved hypothetic 33.6 2.3E+02 0.005 22.1 7.2 66 207-290 89-155 (160)
361 PRK06487 glycerate dehydrogena 33.6 1.2E+02 0.0026 26.8 5.8 43 276-318 190-237 (317)
362 PRK13125 trpA tryptophan synth 33.4 1.3E+02 0.0028 25.4 5.8 50 250-299 118-167 (244)
363 cd01977 Nitrogenase_VFe_alpha 33.3 3.9E+02 0.0086 24.7 15.1 191 132-349 61-261 (415)
364 PRK10116 universal stress prot 33.3 2E+02 0.0044 21.3 6.7 43 273-315 90-139 (142)
365 COG1701 Uncharacterized protei 33.2 2.7E+02 0.0059 22.8 7.5 93 281-383 151-244 (256)
366 PRK06843 inosine 5-monophospha 32.9 1.1E+02 0.0023 28.2 5.4 67 281-347 10-89 (404)
367 TIGR00243 Dxr 1-deoxy-D-xylulo 32.8 2E+02 0.0043 26.2 6.9 39 275-314 83-124 (389)
368 PF12119 DUF3581: Protein of u 32.5 1E+02 0.0023 25.0 4.6 52 251-311 112-163 (218)
369 TIGR03586 PseI pseudaminic aci 32.5 2.4E+02 0.0053 25.1 7.4 60 251-315 80-142 (327)
370 PRK08745 ribulose-phosphate 3- 32.4 2.6E+02 0.0056 23.3 7.2 48 251-298 100-147 (223)
371 cd01137 PsaA Metal binding pro 32.3 3.2E+02 0.0069 23.7 8.2 85 278-364 61-156 (287)
372 PF07085 DRTGG: DRTGG domain; 32.3 47 0.001 23.5 2.6 12 303-314 81-92 (105)
373 PLN02225 1-deoxy-D-xylulose-5- 32.2 1.4E+02 0.0031 29.6 6.5 78 268-347 603-691 (701)
374 PHA00451 protein kinase 32.2 1.4E+02 0.0031 25.5 5.5 47 295-347 196-242 (362)
375 COG2047 Uncharacterized protei 32.1 3E+02 0.0064 22.9 14.3 139 193-360 83-225 (258)
376 PRK15424 propionate catabolism 31.9 4.2E+02 0.0092 25.6 9.4 102 210-348 94-195 (538)
377 KOG2884|consensus 31.9 2.9E+02 0.0064 22.8 11.1 118 194-347 108-228 (259)
378 COG4567 Response regulator con 31.8 77 0.0017 24.4 3.6 103 232-345 11-124 (182)
379 PF02006 DUF137: Protein of un 31.7 2.6E+02 0.0056 22.0 7.7 87 281-377 87-174 (178)
380 cd07948 DRE_TIM_HCS Saccharomy 31.6 3.3E+02 0.0072 23.3 8.9 116 209-344 111-238 (262)
381 COG3563 KpsC Capsule polysacch 31.5 2.4E+02 0.0052 26.5 7.2 47 262-316 206-253 (671)
382 TIGR00725 conserved hypothetic 31.4 75 0.0016 24.7 3.7 38 278-317 86-125 (159)
383 PRK00124 hypothetical protein; 31.3 30 0.00066 26.6 1.5 125 250-383 13-146 (151)
384 TIGR02660 nifV_homocitr homoci 31.3 4E+02 0.0087 24.1 9.8 101 209-321 112-224 (365)
385 COG0548 ArgB Acetylglutamate k 31.2 3.4E+02 0.0074 23.3 7.9 70 193-280 3-74 (265)
386 TIGR01012 Sa_S2_E_A ribosomal 31.0 2.9E+02 0.0063 22.5 8.3 122 207-348 44-170 (196)
387 PTZ00254 40S ribosomal protein 31.0 3.2E+02 0.007 23.2 7.5 100 207-322 53-157 (249)
388 PRK14994 SAM-dependent 16S rib 30.9 3.6E+02 0.0078 23.5 8.8 128 130-288 32-167 (287)
389 COG0673 MviM Predicted dehydro 30.9 2.1E+02 0.0046 25.3 7.2 55 251-313 41-97 (342)
390 PRK08005 epimerase; Validated 30.7 3.1E+02 0.0066 22.6 7.4 48 251-298 96-143 (210)
391 PRK05472 redox-sensing transcr 30.0 3.1E+02 0.0067 22.5 10.8 30 207-241 66-95 (213)
392 PLN02582 1-deoxy-D-xylulose-5- 30.0 1.7E+02 0.0038 29.1 6.7 76 270-347 581-667 (677)
393 PLN02770 haloacid dehalogenase 30.0 3.3E+02 0.0072 22.9 7.8 106 206-332 110-226 (248)
394 cd00027 BRCT Breast Cancer Sup 29.8 1.4E+02 0.003 18.3 4.9 62 231-314 2-65 (72)
395 PF01008 IF-2B: Initiation fac 29.7 2.6E+02 0.0056 24.1 7.2 99 193-313 107-216 (282)
396 PRK07232 bifunctional malic en 29.6 3E+02 0.0064 27.9 8.2 87 212-312 172-281 (752)
397 cd01080 NAD_bind_m-THF_DH_Cycl 29.5 2.8E+02 0.0061 21.8 10.1 95 230-341 44-140 (168)
398 TIGR01284 alt_nitrog_alph nitr 29.3 4.9E+02 0.011 24.5 14.0 169 133-313 99-276 (457)
399 COG1671 Uncharacterized protei 29.2 1.1E+02 0.0024 23.5 4.0 71 250-324 14-84 (150)
400 PRK09212 pyruvate dehydrogenas 29.0 4.2E+02 0.009 23.6 8.9 78 267-347 236-324 (327)
401 PRK12861 malic enzyme; Reviewe 29.0 2.6E+02 0.0055 28.3 7.6 87 212-312 176-285 (764)
402 PRK05692 hydroxymethylglutaryl 28.9 3.9E+02 0.0085 23.3 11.9 95 245-345 152-260 (287)
403 KOG3339|consensus 28.8 1.2E+02 0.0026 24.2 4.3 17 75-91 131-147 (211)
404 PTZ00409 Sir2 (Silent Informat 28.8 3.8E+02 0.0083 23.1 8.7 83 263-348 175-264 (271)
405 COG1154 Dxs Deoxyxylulose-5-ph 28.7 2.9E+02 0.0062 26.9 7.4 80 267-348 536-624 (627)
406 PRK08125 bifunctional UDP-gluc 28.0 4.5E+02 0.0098 26.1 9.4 38 251-290 43-82 (660)
407 PLN02696 1-deoxy-D-xylulose-5- 27.9 3.3E+02 0.0072 25.5 7.6 39 275-315 139-181 (454)
408 COG2247 LytB Putative cell wal 27.7 4.3E+02 0.0094 23.4 8.7 15 138-152 30-44 (337)
409 KOG1185|consensus 27.6 5.4E+02 0.012 24.4 10.2 72 208-290 203-283 (571)
410 COG2875 CobM Precorrin-4 methy 27.6 1.6E+02 0.0034 24.6 4.9 12 231-242 3-14 (254)
411 cd07940 DRE_TIM_IPMS 2-isoprop 27.4 3.9E+02 0.0086 22.8 9.4 120 208-345 112-244 (268)
412 PRK04148 hypothetical protein; 27.4 91 0.002 23.5 3.4 15 11-25 30-45 (134)
413 PF10911 DUF2717: Protein of u 27.1 1E+02 0.0022 20.3 3.1 34 341-375 4-37 (77)
414 PF01866 Diphthamide_syn: Puta 27.0 1.4E+02 0.0031 26.3 5.1 78 231-314 211-288 (307)
415 PF02670 DXP_reductoisom: 1-de 26.9 1.8E+02 0.0038 21.8 4.8 30 251-281 37-66 (129)
416 COG2089 SpsE Sialic acid synth 26.8 4.1E+02 0.0089 23.6 7.5 62 248-314 90-154 (347)
417 COG1922 WecG Teichoic acid bio 26.8 4E+02 0.0087 22.7 8.0 116 130-276 59-175 (253)
418 PF03102 NeuB: NeuB family; I 26.5 1.6E+02 0.0034 24.9 5.0 61 250-315 58-121 (241)
419 TIGR00036 dapB dihydrodipicoli 26.4 86 0.0019 26.9 3.6 35 282-316 67-101 (266)
420 TIGR00732 dprA DNA protecting 26.2 1.6E+02 0.0036 24.4 5.1 55 283-340 155-218 (220)
421 cd04726 KGPDC_HPS 3-Keto-L-gul 26.0 3.1E+02 0.0067 22.0 6.8 81 251-331 93-185 (202)
422 PRK05718 keto-hydroxyglutarate 25.9 3.8E+02 0.0082 22.1 7.9 35 276-312 99-133 (212)
423 cd01539 PBP1_GGBP Periplasmic 25.7 4.4E+02 0.0095 22.8 9.0 34 283-316 57-91 (303)
424 cd01746 GATase1_CTP_Synthase T 25.7 2E+02 0.0044 24.1 5.6 37 279-315 51-92 (235)
425 PRK01231 ppnK inorganic polyph 25.7 1.7E+02 0.0037 25.6 5.3 55 282-349 61-119 (295)
426 cd01574 PBP1_LacI Ligand-bindi 25.5 4E+02 0.0086 22.2 10.1 14 301-314 73-86 (264)
427 cd01974 Nitrogenase_MoFe_beta 25.4 5.6E+02 0.012 23.9 10.8 170 133-314 60-256 (435)
428 PRK08305 spoVFB dipicolinate s 25.3 43 0.00093 27.1 1.5 24 2-25 13-39 (196)
429 PRK14478 nitrogenase molybdenu 25.3 5.9E+02 0.013 24.1 15.9 169 133-312 94-267 (475)
430 PF06415 iPGM_N: BPG-independe 25.0 4.1E+02 0.0088 22.2 8.5 61 208-272 44-105 (223)
431 PRK15438 erythronate-4-phospha 24.7 2.6E+02 0.0056 25.6 6.4 76 231-316 117-209 (378)
432 cd07943 DRE_TIM_HOA 4-hydroxy- 24.4 4.5E+02 0.0097 22.4 10.4 117 209-345 111-240 (263)
433 PRK09722 allulose-6-phosphate 24.3 2.1E+02 0.0046 23.9 5.4 48 251-298 98-145 (229)
434 cd01452 VWA_26S_proteasome_sub 24.3 3.8E+02 0.0082 21.6 7.5 54 195-261 109-162 (187)
435 cd07382 MPP_DR1281 Deinococcus 24.3 4.5E+02 0.0098 22.4 7.8 86 197-292 2-89 (255)
436 KOG2848|consensus 24.2 3.9E+02 0.0085 22.8 6.7 37 197-240 137-173 (276)
437 PRK08673 3-deoxy-7-phosphohept 24.2 5.2E+02 0.011 23.1 10.3 106 198-315 96-208 (335)
438 COG1736 DPH2 Diphthamide synth 24.0 2.3E+02 0.0049 25.5 5.7 63 248-314 254-316 (347)
439 COG2910 Putative NADH-flavin r 24.0 43 0.00093 26.8 1.2 24 2-25 6-30 (211)
440 COG0118 HisH Glutamine amidotr 23.9 1.8E+02 0.0039 23.7 4.6 68 231-315 4-82 (204)
441 PF00533 BRCT: BRCA1 C Terminu 23.9 69 0.0015 20.7 2.1 67 228-314 6-72 (78)
442 COG0281 SfcA Malic enzyme [Ene 23.9 5.9E+02 0.013 23.6 8.2 87 212-312 186-297 (432)
443 PF13241 NAD_binding_7: Putati 23.9 63 0.0014 22.8 2.0 44 279-322 56-100 (103)
444 PLN02928 oxidoreductase family 23.8 2.1E+02 0.0046 25.7 5.7 43 275-317 218-265 (347)
445 PF06506 PrpR_N: Propionate ca 23.8 2.2E+02 0.0047 22.5 5.2 103 209-347 63-165 (176)
446 PF13167 GTP-bdg_N: GTP-bindin 23.8 2E+02 0.0042 20.2 4.3 36 251-287 47-82 (95)
447 TIGR00639 PurN phosphoribosylg 23.7 3.9E+02 0.0085 21.5 7.7 62 251-313 69-134 (190)
448 TIGR01286 nifK nitrogenase mol 23.6 6.6E+02 0.014 24.1 12.6 194 133-348 117-337 (515)
449 PRK08091 ribulose-phosphate 3- 23.5 4.4E+02 0.0096 22.1 7.0 48 251-298 106-155 (228)
450 TIGR00377 ant_ant_sig anti-ant 23.5 2.3E+02 0.005 19.8 5.0 44 207-268 59-102 (108)
451 PRK08306 dipicolinate synthase 23.5 4.2E+02 0.0092 23.1 7.4 23 2-25 8-31 (296)
452 PF03568 Peptidase_C50: Peptid 23.3 3.8E+02 0.0082 24.5 7.3 16 299-314 359-374 (383)
453 PF04413 Glycos_transf_N: 3-De 23.3 3.1E+02 0.0068 21.9 6.1 101 194-314 22-125 (186)
454 PF06345 Drf_DAD: DRF Autoregu 23.2 45 0.00098 13.9 0.6 10 299-308 5-14 (15)
455 PRK05299 rpsB 30S ribosomal pr 23.1 2.2E+02 0.0047 24.4 5.3 47 298-347 171-218 (258)
456 COG2984 ABC-type uncharacteriz 23.0 5.4E+02 0.012 22.8 11.8 158 132-318 85-250 (322)
457 TIGR01282 nifD nitrogenase mol 22.9 6.5E+02 0.014 23.8 17.2 192 133-348 106-305 (466)
458 PLN02327 CTP synthase 22.7 6.3E+02 0.014 24.5 8.6 86 230-315 297-399 (557)
459 TIGR01761 thiaz-red thiazoliny 22.6 3.1E+02 0.0067 24.6 6.4 92 193-314 2-97 (343)
460 PF13277 YmdB: YmdB-like prote 22.6 2.6E+02 0.0056 23.8 5.5 106 198-315 1-112 (253)
461 cd01413 SIR2_Af2 SIR2_Af2: Arc 22.2 2.7E+02 0.0058 23.1 5.7 55 263-317 147-208 (222)
462 COG1090 Predicted nucleoside-d 22.1 55 0.0012 28.1 1.6 25 1-25 3-28 (297)
463 TIGR01768 GGGP-family geranylg 22.0 2.7E+02 0.0058 23.2 5.5 65 212-292 16-80 (223)
464 PRK11475 DNA-binding transcrip 21.9 4.4E+02 0.0095 21.5 6.8 80 271-350 23-117 (207)
465 PF13460 NAD_binding_10: NADH( 21.9 51 0.0011 26.0 1.3 25 1-25 3-28 (183)
466 cd06295 PBP1_CelR Ligand bindi 21.9 4.8E+02 0.01 21.9 9.9 15 301-315 81-95 (275)
467 COG4378 Uncharacterized protei 21.8 1.5E+02 0.0031 20.5 3.1 74 233-315 3-79 (103)
468 PRK05749 3-deoxy-D-manno-octul 21.8 6.3E+02 0.014 23.2 10.8 103 193-314 50-154 (425)
469 COG0052 RpsB Ribosomal protein 21.8 1.7E+02 0.0037 24.7 4.2 25 298-322 170-195 (252)
470 PRK13846 putative glycerol-3-p 21.6 4.7E+02 0.01 23.2 7.1 52 202-269 9-63 (316)
471 PRK05583 ribosomal protein L7A 21.6 3.1E+02 0.0067 19.5 6.4 78 208-304 21-98 (104)
472 cd07347 harmonin_N_like N-term 21.5 2.6E+02 0.0057 18.7 4.7 46 334-382 4-49 (78)
473 cd07941 DRE_TIM_LeuA3 Desulfob 21.5 5.3E+02 0.011 22.2 10.5 119 208-343 117-248 (273)
474 cd03466 Nitrogenase_NifN_2 Nit 21.4 6.7E+02 0.014 23.4 12.1 171 133-314 59-253 (429)
475 PRK10310 PTS system galactitol 21.4 2.9E+02 0.0063 19.1 5.0 54 232-291 5-58 (94)
476 PF00731 AIRC: AIR carboxylase 21.4 3.9E+02 0.0084 20.6 5.8 77 233-315 4-86 (150)
477 COG3340 PepE Peptidase E [Amin 21.4 4.8E+02 0.01 21.6 10.8 71 246-317 47-128 (224)
478 PRK13181 hisH imidazole glycer 21.3 1.9E+02 0.0041 23.4 4.6 58 251-316 13-81 (199)
479 PRK09653 eutD phosphotransacet 21.3 5.9E+02 0.013 22.6 11.2 45 210-271 26-71 (324)
480 TIGR01417 PTS_I_fam phosphoeno 21.2 7.1E+02 0.015 24.3 8.9 75 264-338 154-235 (565)
481 PRK02155 ppnK NAD(+)/NADH kina 21.2 3E+02 0.0064 24.1 5.9 55 282-349 62-120 (291)
482 COG0519 GuaA GMP synthase, PP- 21.1 83 0.0018 27.0 2.4 68 247-315 168-249 (315)
483 CHL00067 rps2 ribosomal protei 21.1 2.6E+02 0.0055 23.4 5.3 25 298-322 175-200 (230)
484 TIGR02886 spore_II_AA anti-sig 21.1 3E+02 0.0065 19.2 5.4 45 206-268 54-98 (106)
485 PRK14188 bifunctional 5,10-met 21.1 5.7E+02 0.012 22.4 7.6 66 210-284 16-85 (296)
486 cd05311 NAD_bind_2_malic_enz N 21.1 4.9E+02 0.011 21.6 8.1 28 278-305 92-119 (226)
487 KOG4202|consensus 21.0 3.9E+02 0.0085 21.3 5.7 38 251-290 105-142 (227)
488 cd07041 STAS_RsbR_RsbS_like Su 21.0 2.3E+02 0.005 19.9 4.5 40 207-264 57-96 (109)
489 TIGR02706 P_butyryltrans phosp 20.9 5.7E+02 0.012 22.4 11.2 65 210-291 24-95 (294)
490 TIGR00511 ribulose_e2b2 ribose 20.9 5.8E+02 0.013 22.4 9.5 95 196-312 118-222 (301)
491 PRK05632 phosphate acetyltrans 20.8 8.7E+02 0.019 24.4 11.6 119 210-347 388-548 (684)
492 cd01271 Fe65_C Fe65 C-terminal 20.6 3.3E+02 0.0072 20.2 5.0 44 194-237 3-48 (124)
493 PRK06849 hypothetical protein; 20.5 1.5E+02 0.0032 27.1 4.2 25 1-25 9-34 (389)
494 PRK11890 phosphate acetyltrans 20.5 4.7E+02 0.01 23.1 6.9 117 210-346 33-166 (312)
495 cd07939 DRE_TIM_NifV Streptomy 20.1 5.5E+02 0.012 21.8 13.4 117 209-345 109-237 (259)
No 1
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=5.2e-49 Score=358.58 Aligned_cols=368 Identities=51% Similarity=0.851 Sum_probs=291.8
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCc------cccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHC------FKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
.||+++++.+| ++|.++||+|+++... ..+...+++.++....+.+...+.....+..+++.........+.+
T Consensus 12 ~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (392)
T cd03805 12 IGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRMLYLALYLLLLP 91 (392)
T ss_pred CchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHHHHHHHHHHHHHHhcc
Confidence 59999999999 9999999999988211 1223333455666544444433333334444444443333322345
Q ss_pred -cCCCEEEEcccccchhHHHhhc-ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 75 -EKPDLVFCDLVSICIPILQAKQ-FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 75 -~~~Dvi~~~~~~~~~~~~~~~~-~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
.++|+||++......++..... .|+++++|.++..........+++++....++++++++.+|.++++|+..++.+.+
T Consensus 92 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s~~~~~~~~~ 171 (392)
T cd03805 92 DEKYDVFIVDQVSACVPLLKLFSPSKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMADKIVVNSNFTASVFKK 171 (392)
T ss_pred cCCCCEEEEcCcchHHHHHHHhcCCcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhCceEEEEcChhHHHHHHH
Confidence 8999999998665555554444 89999999766544444445555666667788999999999999999999999988
Q ss_pred HhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhc---cccccc
Q psy12587 153 TFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRL---SDEMKT 229 (390)
Q Consensus 153 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~---~~~~~~ 229 (390)
.++.....++.+++||+|.+.+.+........... ..++.++++++|++.+.||++.+++++.++.++. ++
T Consensus 172 ~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~~~~--~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~---- 245 (392)
T cd03805 172 TFPSLAKNPREVVYPCVDTDSFESTSEDPDPGLLI--PKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKN---- 245 (392)
T ss_pred HhcccccCCcceeCCCcCHHHcCcccccccccccc--cCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccC----
Confidence 77655334456999999988776543221111111 3347789999999999999999999999998876 54
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHH-cCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKK-LKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~-~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
++|+++|+++.....+..|.+++++.+++ +++.++|.|+|+++++++..+|+.||++++||..|+||++++|||+||+
T Consensus 246 -~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~ 324 (392)
T cd03805 246 -VRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGK 324 (392)
T ss_pred -eEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCC
Confidence 99999999887656666788999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy12587 309 PVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQL 377 (390)
Q Consensus 309 pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (390)
|||+++.++..|++.++.+|+++++|+++++++|.+++++++ .++++++++++.+.++|+|+.+++++
T Consensus 325 PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~~~-~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 325 PVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLANDPD-LADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred CEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 999999999999999999999987699999999999999998 99999999999998999999998763
No 2
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=1.3e-46 Score=343.80 Aligned_cols=372 Identities=17% Similarity=0.186 Sum_probs=274.4
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCc----c--ccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHC----F--KETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~----~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
.||+++++.+| ++|.++||+|+++... . ......++.+..+.... ..... ...+...+..+.......+++
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~ 96 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGP-YEGLD-KEDLPTQLCAFTGGVLRAEAR 96 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCC-cccCC-HHHHHHHHHHHHHHHHHHHhh
Confidence 59999999999 9999999999998211 1 11123455666552211 11111 111111111111111111222
Q ss_pred ---cCCCEEEEcccccchh---HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHH
Q psy12587 75 ---EKPDLVFCDLVSICIP---ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKS 148 (390)
Q Consensus 75 ---~~~Dvi~~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 148 (390)
.+||+||+|.+..+.. +.+..++|+|+++|+.....................+.++.+++.+|.++++|+...+
T Consensus 97 ~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~~ 176 (405)
T TIGR03449 97 HEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEAR 176 (405)
T ss_pred ccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHHH
Confidence 5899999998544332 2334458999999975321110000000011112334567789999999999999998
Q ss_pred HHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccc
Q psy12587 149 VVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 149 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
.+.+.++ .+.+++.++|||+|.+.+.+......+..++ ++ .++++|+++|++.+.||++.++++++.+.++.++
T Consensus 177 ~~~~~~~-~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~--- 250 (405)
T TIGR03449 177 DLVRHYD-ADPDRIDVVAPGADLERFRPGDRATERARLG-LP-LDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPD--- 250 (405)
T ss_pred HHHHHcC-CChhhEEEECCCcCHHHcCCCcHHHHHHhcC-CC-CCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCC---
Confidence 8887665 3357899999999998876554444445443 22 3678899999999999999999999999876652
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
.+++|+++|+.... +..+.++++++++++++.++|.|+|+++++++.++|+.||++++||..|++|++++|||++|+
T Consensus 251 ~~~~l~ivG~~~~~---g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~ 327 (405)
T TIGR03449 251 RNLRVIVVGGPSGS---GLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGT 327 (405)
T ss_pred cceEEEEEeCCCCC---cchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC
Confidence 24899999964321 112337889999999998999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 309 PVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 309 pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
|||+++.++..|++.++.+|+++++ |+++++++|.+++++++ .++++++++++.+ ++|+|+.+++++.++|.++++
T Consensus 328 Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~-~~~~~~~~~~~~~-~~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 328 PVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDDPR-TRIRMGAAAVEHA-AGFSWAATADGLLSSYRDALA 404 (405)
T ss_pred CEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998 99999999999999988 8999999999887 789999999999999998764
No 3
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.2e-45 Score=338.52 Aligned_cols=373 Identities=18% Similarity=0.266 Sum_probs=260.6
Q ss_pred CCcchhhhHhh-HhhhhcCC--ceeecCCcc------------ccccCCCcceEEeccccccccchhhHHHHHHHHHHHH
Q psy12587 2 LGATARLTITA-TAWGATGP--RTTAHDHCF------------KETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVI 66 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~--~V~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (390)
.||+++++.+| ++|.++|| +|++++... ......++.+.+++.. +.. .........++..+..
T Consensus 25 ~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~-~~~-~~~~~~~~~~~~~~~~ 102 (439)
T TIGR02472 25 TGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFG-PRR-YLRKELLWPYLDELAD 102 (439)
T ss_pred CCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCC-CCC-CcChhhhhhhHHHHHH
Confidence 69999999999 99999997 888872111 1112356677766422 111 1111222233222222
Q ss_pred HHHHHHhh--cCCCEEEEcccccchhHH---HhhcccEEEEeecCCccccc---hhhh----hhhhcccch-hhHHHHHh
Q psy12587 67 ALYVAWYS--EKPDLVFCDLVSICIPIL---QAKQFKVLFYCHYPDQLLSK---QGSF----LKSIYRFPL-NKLEEWTT 133 (390)
Q Consensus 67 ~~~~~~~~--~~~Dvi~~~~~~~~~~~~---~~~~~~~v~~~h~~~~~~~~---~~~~----~~~~~~~~~-~~~~~~~~ 133 (390)
.....+.+ .+|||||+|++..++... +..++|+|++.|+....... .... ....+.... ...+++++
T Consensus 103 ~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (439)
T TIGR02472 103 NLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEETL 182 (439)
T ss_pred HHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHHHH
Confidence 22222222 379999999865444333 33448999999974321100 0000 011111000 12467789
Q ss_pred cCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccc----hhhhcCC-CCCCCCeEEEEeecccccCC
Q psy12587 134 CKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEP----IENVLNP-LPGKEDIVFLSINRYERKKN 208 (390)
Q Consensus 134 ~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~----~~~~~~~-l~~~~~~~i~~~g~~~~~K~ 208 (390)
+.+|.++++|+.........+.+.+.+++.+||||+|.+.|.+..... .+..+.. ....+.++|+++||+.+.||
T Consensus 183 ~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg 262 (439)
T TIGR02472 183 AHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAISRPDRRKN 262 (439)
T ss_pred HhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEcCCcccCC
Confidence 999999999976544433333445578999999999998886543211 1111100 01225678999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccceEEE-EEcCCCCCCc---chhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLV-VAGGYDPHNI---ENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC 284 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~-i~G~~~~~~~---~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 284 (390)
++.+++|++.+..... ...++ ++|+++.... ....+.+++..+++++++.++|.|.|+++.+++..+|+.|
T Consensus 263 ~~~li~A~~~l~~~~~-----~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a 337 (439)
T TIGR02472 263 IPSLVEAYGRSPKLQE-----MANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLA 337 (439)
T ss_pred HHHHHHHHHhChhhhh-----hccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHH
Confidence 9999999986532111 12333 5687654311 1123455677788999999999999999999999999987
Q ss_pred ----ceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHH
Q psy12587 285 ----HCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQF 359 (390)
Q Consensus 285 ----dv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~ 359 (390)
|++++||..|+||++++|||+||+|||+|+.++.+|++.++.+|+++++ |+++++++|.+++++++ .+++++++
T Consensus 338 ~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~~~-~~~~~~~~ 416 (439)
T TIGR02472 338 ARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALSDSS-QWQLWSRN 416 (439)
T ss_pred hhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhCHH-HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999 99999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 360 GFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+++.+.++|||+.+++++.++++
T Consensus 417 a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 417 GIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999899999999999998763
No 4
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=2.1e-45 Score=332.36 Aligned_cols=280 Identities=14% Similarity=0.144 Sum_probs=235.6
Q ss_pred Hhh-cCCCEEEEcccccchhHHHhh-----cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHh
Q psy12587 72 WYS-EKPDLVFCDLVSICIPILQAK-----QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEF 145 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~~~~~~~~~-----~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~ 145 (390)
+.+ .+||+||+|....+.....+. +.|+++++|+.+......... .....+..++++|.++++|+.
T Consensus 113 ~~~~~~~diihaH~~~~~~~~~~~~~~~~~~~~~~~t~Hg~d~~~~~~~~~--------~~~~~~~~~~~ad~vv~~S~~ 184 (406)
T PRK15427 113 VATPFVADVFIAHFGPAGVTAAKLRELGVLRGKIATIFHGIDISSREVLNH--------YTPEYQQLFRRGDLMLPISDL 184 (406)
T ss_pred hhccCCCCEEEEcCChHHHHHHHHHHhCCCCCCeEEEEcccccccchhhhh--------hhHHHHHHHHhCCEEEECCHH
Confidence 445 889999999976544433332 247788999865432111110 112335567899999999999
Q ss_pred HHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccc
Q psy12587 146 TKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSD 225 (390)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~ 225 (390)
.++.+.+. +.+.+++.++|||+|.+.|.+.... ..++++.|+++||+.+.||++.+++|++.+.+++++
T Consensus 185 ~~~~l~~~--g~~~~ki~vi~nGvd~~~f~~~~~~---------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~ 253 (406)
T PRK15427 185 WAGRLQKM--GCPPEKIAVSRMGVDMTRFSPRPVK---------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVA 253 (406)
T ss_pred HHHHHHHc--CCCHHHEEEcCCCCCHHHcCCCccc---------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCC
Confidence 99998774 4446899999999999887643211 123567899999999999999999999999887775
Q ss_pred ccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCC------CCCCcc
Q psy12587 226 EMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN------EHFGIV 299 (390)
Q Consensus 226 ~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~------e~~~~~ 299 (390)
+++.|+|+|+.. +++++.++++++.++|.|+|+++++++.++|+.||++++||.. ||+|++
T Consensus 254 -----~~l~ivG~G~~~--------~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~ 320 (406)
T PRK15427 254 -----FRYRILGIGPWE--------RRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVA 320 (406)
T ss_pred -----EEEEEEECchhH--------HHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHH
Confidence 999999999765 8899999999999999999999999999999999999999974 999999
Q ss_pred HHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy12587 300 PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD-NDGNIIQQFSQFGFNRFNEKFSFQAFSIQL 377 (390)
Q Consensus 300 ~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (390)
++|||+||+|||+|+.+|.+|++.++.+|+++++ |+++++++|.++++ |++ .+++|++++++.+.++|+|+.+++++
T Consensus 321 llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~-~~~~~~~~ar~~v~~~f~~~~~~~~l 399 (406)
T PRK15427 321 LMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTD-ELAPVVKRAREKVETDFNQQVINREL 399 (406)
T ss_pred HHHHHhCCCCEEEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999998 99999999999999 888 89999999999999999999999999
Q ss_pred HHHHHhh
Q psy12587 378 NTIVNNM 384 (390)
Q Consensus 378 ~~~~~~~ 384 (390)
.++|+++
T Consensus 400 ~~~~~~~ 406 (406)
T PRK15427 400 ASLLQAL 406 (406)
T ss_pred HHHHhhC
Confidence 9999763
No 5
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=3.1e-45 Score=334.86 Aligned_cols=364 Identities=12% Similarity=0.096 Sum_probs=271.4
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecC-C-cc--------------ccccCCCcceEEeccccccccchhhHHHHHHHHHH
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHD-H-CF--------------KETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMI 64 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~-~-~~--------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (390)
.||++.++.+| ++|.++||+|+++. . .. .+....++.+.+++.+.+... ..+..+.....+.
T Consensus 14 ~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~-~~~~~~~~~~~~~ 92 (412)
T PRK10307 14 LTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQP-SGLKRLLHLGSFA 92 (412)
T ss_pred ccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCc-cHHHHHHHHHHHH
Confidence 58999999999 99999999999982 1 11 112234566666643322111 1122222222222
Q ss_pred HHHHHHHHh--hcCCCEEEEcccccc-----hhHHHhhcccEEEEeecCCccccchhh-hhhhhcccchhhHHHHHhcCc
Q psy12587 65 VIALYVAWY--SEKPDLVFCDLVSIC-----IPILQAKQFKVLFYCHYPDQLLSKQGS-FLKSIYRFPLNKLEEWTTCKA 136 (390)
Q Consensus 65 ~~~~~~~~~--~~~~Dvi~~~~~~~~-----~~~~~~~~~~~v~~~h~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a 136 (390)
.......+. +.+||+||+|.+... ..+.+..++|+|+++|+.......... ........+..++++++++.+
T Consensus 93 ~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 172 (412)
T PRK10307 93 LSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYEVDAAFGLGLLKGGKVARLATAFERSLLRRF 172 (412)
T ss_pred HHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCCHHHHHHhCCccCcHHHHHHHHHHHHHHhhC
Confidence 211111111 178999999875422 223344458999999875432111111 112223334556888999999
Q ss_pred ceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCcc---chhhhcCCCCCCCCeEEEEeecccccCCHHHHH
Q psy12587 137 DKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPE---PIENVLNPLPGKEDIVFLSINRYERKKNLELAI 213 (390)
Q Consensus 137 d~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll 213 (390)
|.++++|+.+++.+.+. +.+..++.++|||+|.+.+.+.... ..++.++ ..++.++++|+|++.+.||++.++
T Consensus 173 d~ii~~S~~~~~~~~~~--~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~G~l~~~kg~~~li 248 (412)
T PRK10307 173 DNVSTISRSMMNKAREK--GVAAEKVIFFPNWSEVARFQPVADADVDALRAQLG--LPDGKKIVLYSGNIGEKQGLELVI 248 (412)
T ss_pred CEEEecCHHHHHHHHHc--CCCcccEEEECCCcCHhhcCCCCccchHHHHHHcC--CCCCCEEEEEcCccccccCHHHHH
Confidence 99999999999998775 3446789999999998877654321 2444443 233678999999999999999999
Q ss_pred HHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCC
Q psy12587 214 YSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN 293 (390)
Q Consensus 214 ~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~ 293 (390)
+|++.+.+ .+ +++|+|+|+|+.. +++++++++++++ +|.|+|+++.+++.++|+.||++++||..
T Consensus 249 ~a~~~l~~-~~-----~~~l~ivG~g~~~--------~~l~~~~~~~~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~~ 313 (412)
T PRK10307 249 DAARRLRD-RP-----DLIFVICGQGGGK--------ARLEKMAQCRGLP-NVHFLPLQPYDRLPALLKMADCHLLPQKA 313 (412)
T ss_pred HHHHHhcc-CC-----CeEEEEECCChhH--------HHHHHHHHHcCCC-ceEEeCCCCHHHHHHHHHhcCEeEEeecc
Confidence 99998854 45 3999999999765 8899999999985 79999999999999999999999999998
Q ss_pred CC----CCccHHhhhhcCCCEEEecCCC--cccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhh
Q psy12587 294 EH----FGIVPIEAMFCKRPVIAVNSGG--PKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNE 366 (390)
Q Consensus 294 e~----~~~~~~Ea~a~G~pvi~~~~~~--~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 366 (390)
|+ +|.+++|||+||+|||+|+.+| ..+++. .+|+++++ |+++++++|.+++++++ .+++|++++++.+.+
T Consensus 314 e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~~~-~~~~~~~~a~~~~~~ 390 (412)
T PRK10307 314 GAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQAL-LRPKLGTVAREYAER 390 (412)
T ss_pred CcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHH
Confidence 87 5667899999999999999876 457776 58999998 99999999999999998 999999999999988
Q ss_pred hcCHHHHHHHHHHHHHhhhhhc
Q psy12587 367 KFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
+|||+.+++++.++|++++.++
T Consensus 391 ~fs~~~~~~~~~~~~~~~~~~~ 412 (412)
T PRK10307 391 TLDKENVLRQFIADIRGLVAER 412 (412)
T ss_pred HcCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999988753
No 6
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=3.4e-45 Score=332.71 Aligned_cols=347 Identities=16% Similarity=0.180 Sum_probs=262.6
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCcc-----ccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCF-----KETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS- 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 74 (390)
.||+++++..+ ++|.++||+|+++.... .+....++.+..++...... ...+......+.. . ...++
T Consensus 13 ~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~-~~~~~~~~~~~~~----l-~~~~~~ 86 (398)
T cd03796 13 LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYN-QSTLPTFFGTFPL----L-RNILIR 86 (398)
T ss_pred cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccC-CccccchhhhHHH----H-HHHHHh
Confidence 59999999999 99999999999882111 11223345555553211100 0011111111111 1 12333
Q ss_pred cCCCEEEEcccccch-----hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 75 EKPDLVFCDLVSICI-----PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~-----~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
.+||+||+|++.... .+.+..++|+|++.|+....... . .....++.++.++++|.++++|+...+.
T Consensus 87 ~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~----~----~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 158 (398)
T cd03796 87 ERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADA----S----SIHTNKLLRFSLADVDHVICVSHTSKEN 158 (398)
T ss_pred cCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccch----h----hHHhhHHHHHhhccCCEEEEecHhHhhH
Confidence 899999999854332 22334459999999974321100 0 1112345567789999999999998886
Q ss_pred HHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccccccc
Q psy12587 150 VQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKT 229 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~ 229 (390)
+.... +.+.+++.++|||+|.+.+.+.... ..++.++++++||+.+.||++.+++|++.+.++.++
T Consensus 159 ~~~~~-~~~~~k~~vi~ngvd~~~f~~~~~~---------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~---- 224 (398)
T cd03796 159 TVLRA-SLDPERVSVIPNAVDSSDFTPDPSK---------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPN---- 224 (398)
T ss_pred HHHHh-CCChhhEEEEcCccCHHHcCCCccc---------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCC----
Confidence 54432 2346789999999998877653221 123678999999999999999999999999888775
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
++|+++|+++.. +.++++++++++.++|.|.|+++++++..+|+.||++++||..|++|++++|||+||+|
T Consensus 225 -~~l~i~G~g~~~--------~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~P 295 (398)
T cd03796 225 -VRFIIGGDGPKR--------ILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLL 295 (398)
T ss_pred -EEEEEEeCCchH--------HHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCC
Confidence 999999998754 78999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhh
Q psy12587 310 VIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDK 387 (390)
Q Consensus 310 vi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
||+++.++.+|++.++. ++++++|.++++++|.++++++. ....+.+++++.+.++|||+.+++++.++|++++..
T Consensus 296 VI~s~~gg~~e~i~~~~-~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~~ 371 (398)
T cd03796 296 VVSTRVGGIPEVLPPDM-ILLAEPDVESIVRKLEEAISILR-TGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQT 371 (398)
T ss_pred EEECCCCCchhheeCCc-eeecCCCHHHHHHHHHHHHhChh-hhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999998764 44444499999999999999877 666778889999999999999999999999998764
No 7
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.4e-44 Score=328.29 Aligned_cols=369 Identities=23% Similarity=0.282 Sum_probs=285.1
Q ss_pred CCcchhhhHhh-HhhhhcCCc--eeecC-Ccc---ccc---cCCCcce---------EE-eccccccccchhhHHHHHHH
Q psy12587 2 LGATARLTITA-TAWGATGPR--TTAHD-HCF---KET---KDGTLPV---------KV-IGDWLPRNIFGKFYALCMYL 61 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~--V~~~~-~~~---~~~---~~~~~~i---------~~-~~~~~~~~~~~~~~~~~~~~ 61 (390)
.||+||++... .+|.++|++ |++++ +.. ++. ....+.+ .. ...|++...++++..+.+.+
T Consensus 46 ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~~~~~~~~~~t~~~~~~ 125 (463)
T PLN02949 46 GGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKWIEEETYPRFTMIGQSL 125 (463)
T ss_pred CCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEeccccccccccCCceehHHHHH
Confidence 36999999999 999999995 66662 211 110 1112223 22 35788888888888888888
Q ss_pred HHHHHHHHHHHhhcCCCEEEEcc--cccchhHHHhhcccEEEEeecCCcccc-------------------c--hhhhhh
Q psy12587 62 RMIVIALYVAWYSEKPDLVFCDL--VSICIPILQAKQFKVLFYCHYPDQLLS-------------------K--QGSFLK 118 (390)
Q Consensus 62 ~~~~~~~~~~~~~~~~Dvi~~~~--~~~~~~~~~~~~~~~v~~~h~~~~~~~-------------------~--~~~~~~ 118 (390)
+.++..+.. +.+..|| |++.+ .++.++++++.+.|+++++|.|+.... . .....+
T Consensus 126 ~~~~l~~~~-~~~~~p~-v~vDt~~~~~~~pl~~~~~~~v~~yvH~p~~~~dm~~~v~~~~~~~~~~~~~a~~~~~~~~k 203 (463)
T PLN02949 126 GSVYLAWEA-LCKFTPL-YFFDTSGYAFTYPLARLFGCKVVCYTHYPTISSDMISRVRDRSSMYNNDASIARSFWLSTCK 203 (463)
T ss_pred HHHHHHHHH-HHhcCCC-EEEeCCCcccHHHHHHhcCCcEEEEEeCCcchHHHHHHHhhcccccCccchhhccchhHHHH
Confidence 887776665 2224555 55554 346778888778999999998754320 0 013344
Q ss_pred hhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEE
Q psy12587 119 SIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFL 198 (390)
Q Consensus 119 ~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 198 (390)
.+++..+.+++.+..+.||.++++|+++++.+.+.++. ..++.+++||+|.+.+...+.. ...+...++
T Consensus 204 ~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~--~~~i~vvyp~vd~~~~~~~~~~---------~~~~~~~il 272 (463)
T PLN02949 204 ILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRI--PERIKRVYPPCDTSGLQALPLE---------RSEDPPYII 272 (463)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCC--CCCeEEEcCCCCHHHcccCCcc---------ccCCCCEEE
Confidence 55666666778888899999999999999999887653 3578999999987655322110 112456789
Q ss_pred EeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHH
Q psy12587 199 SINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKI 278 (390)
Q Consensus 199 ~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~ 278 (390)
++||+.++||++.+|+|+..+.++.++ ..++++|+|+|++... ++..|.+++++++++++++++|.|+|+++++++.
T Consensus 273 ~vGR~~~~Kg~~llI~A~~~l~~~~~~-~~~~~~LvIvG~~~~~--~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~ 349 (463)
T PLN02949 273 SVAQFRPEKAHALQLEAFALALEKLDA-DVPRPKLQFVGSCRNK--EDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLV 349 (463)
T ss_pred EEEeeeccCCHHHHHHHHHHHHHhccc-cCCCcEEEEEeCCCCc--ccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHH
Confidence 999999999999999999988754221 0124999999988532 3446778999999999999999999999999999
Q ss_pred HHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcc-cceec---CcceeeecCCHHHHHHHHHHHhcCChhHHH
Q psy12587 279 SLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPK-ESVVD---GRTGFLCESNEEAFAKAMKKIVDNDGNIIQ 354 (390)
Q Consensus 279 ~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~-e~i~~---~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~ 354 (390)
++|+.||++++|+..|+||++++|||++|+|||+++.||.. |++.+ +.+|++++ |+++++++|.++++++++.++
T Consensus 350 ~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~-~~~~la~ai~~ll~~~~~~r~ 428 (463)
T PLN02949 350 RLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT-TVEEYADAILEVLRMRETERL 428 (463)
T ss_pred HHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC-CHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999998864 67665 56899987 999999999999986543788
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 355 QFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
+|++++++.+ ++|||+.+++++.+.+++++++.
T Consensus 429 ~m~~~ar~~~-~~FS~e~~~~~~~~~i~~l~~~~ 461 (463)
T PLN02949 429 EIAAAARKRA-NRFSEQRFNEDFKDAIRPILNSA 461 (463)
T ss_pred HHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHhhh
Confidence 9999999998 78999999999999999987653
No 8
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=6.1e-45 Score=330.65 Aligned_cols=358 Identities=25% Similarity=0.321 Sum_probs=278.2
Q ss_pred CCcchhhhHhh-Hhhhhc--CCceeec-CC--------------ccccccCCCcceEEe---ccccccccchhhHHHHHH
Q psy12587 2 LGATARLTITA-TAWGAT--GPRTTAH-DH--------------CFKETKDGTLPVKVI---GDWLPRNIFGKFYALCMY 60 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~--G~~V~~~-~~--------------~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~ 60 (390)
.||+||++.+. .+|.++ ||+|+++ +. ++.+...+++.+..+ ..+.+.+.++++..+.++
T Consensus 13 ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 92 (419)
T cd03806 13 GGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPRFTLLGQA 92 (419)
T ss_pred CCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCceeeHHHH
Confidence 36999999999 999998 7889988 22 333444455564343 366777777887777777
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEcc-cccchhHHHh-hcccEEEEeecC----Cccccc--------------hh---hhh
Q psy12587 61 LRMIVIALYVAWYSEKPDLVFCDL-VSICIPILQA-KQFKVLFYCHYP----DQLLSK--------------QG---SFL 117 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~~Dvi~~~~-~~~~~~~~~~-~~~~~v~~~h~~----~~~~~~--------------~~---~~~ 117 (390)
+..+...+.. +.+.+||||+.+. ++..+++.++ .+.|+|+++|.| +..... .. ...
T Consensus 93 ~~~~~~~~~~-~~~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (419)
T cd03806 93 LGSMILGLEA-LLKLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYPTISTDMLQKVRSREASYNNSATIARSPVLSKA 171 (419)
T ss_pred HHHHHHHHHH-HHhcCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCCcchHHHHHHHhhccccccCccchhccchHHHH
Confidence 7766555443 2236899999987 5566676665 458999999977 332110 01 245
Q ss_pred hhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEE
Q psy12587 118 KSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVF 197 (390)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 197 (390)
+.+++.++.+++++.++.||.++++|+++++.+.+.++. .+++.+++||+|.+.+.+.... ...+..+|
T Consensus 172 k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~--~~~~~vi~~gvd~~~~~~~~~~---------~~~~~~~i 240 (419)
T cd03806 172 KLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKR--NTKPSIVYPPCDVEELLKLPLD---------EKTRENQI 240 (419)
T ss_pred HHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCc--CCCcEEEcCCCCHHHhcccccc---------cccCCcEE
Confidence 566777777899999999999999999999999987652 2489999999998766543210 12356789
Q ss_pred EEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHH
Q psy12587 198 LSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAK 277 (390)
Q Consensus 198 ~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~ 277 (390)
+|+||+.+.||++.+++|+..+.+..++....+++++|+|++... ++..|.++++++++++++.++|.|+|.++++++
T Consensus 241 l~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~--~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l 318 (419)
T cd03806 241 LSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNE--DDEKRVEDLKLLAKELGLEDKVEFVVNAPFEEL 318 (419)
T ss_pred EEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCc--ccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHH
Confidence 999999999999999999999988765211124999999987543 234577899999999999999999999999999
Q ss_pred HHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCc-cccee---cCcceeeecCCHHHHHHHHHHHhcCChhHH
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGP-KESVV---DGRTGFLCESNEEAFAKAMKKIVDNDGNII 353 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~-~e~i~---~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~ 353 (390)
..+|+.||++++|+..|+||++++|||+||+|||+++.+|. .+++. ++.+|++++ |+++++++|.++++++++.+
T Consensus 319 ~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~-d~~~la~ai~~ll~~~~~~~ 397 (419)
T cd03806 319 LEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLAS-TAEEYAEAIEKILSLSEEER 397 (419)
T ss_pred HHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeC-CHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999998764 57887 789999987 99999999999999887244
Q ss_pred HHHHHHHHHHHhhhcCHHHHHH
Q psy12587 354 QQFSQFGFNRFNEKFSFQAFSI 375 (390)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~ 375 (390)
+.+ .++++.+.++||++.+.+
T Consensus 398 ~~~-~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 398 LRI-RRAARSSVKRFSDEEFER 418 (419)
T ss_pred HHH-HHHHHHHHHhhCHHHhcc
Confidence 445 555555668999998753
No 9
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=2.8e-44 Score=342.32 Aligned_cols=377 Identities=15% Similarity=0.178 Sum_probs=274.5
Q ss_pred CCcchhhhHhh-HhhhhcC--CceeecCCccc---------cc-----------------cCCCcceEEeccccccccch
Q psy12587 2 LGATARLTITA-TAWGATG--PRTTAHDHCFK---------ET-----------------KDGTLPVKVIGDWLPRNIFG 52 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G--~~V~~~~~~~~---------~~-----------------~~~~~~i~~~~~~~~~~~~~ 52 (390)
+||.-.++.+| ++|+++| |+|.+++.... +. ...++.|.+++. -|...+-
T Consensus 194 tGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~-GP~~~~l 272 (1050)
T TIGR02468 194 TGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPF-GPRDKYI 272 (1050)
T ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEecc-CCCCCCc
Confidence 59999999999 9999998 89999811110 00 113555555532 1221111
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-------------h-cCCCEEEEcccccchhHHHhhc---ccEEEEeecCCccccc---
Q psy12587 53 KFYALCMYLRMIVIALYVAWY-------------S-EKPDLVFCDLVSICIPILQAKQ---FKVLFYCHYPDQLLSK--- 112 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~-------------~-~~~Dvi~~~~~~~~~~~~~~~~---~~~v~~~h~~~~~~~~--- 112 (390)
.-..++.++..+.......+. + ..||+||+|.+.++..++.+++ +|+|+|.|+.......
T Consensus 273 ~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~HSLgr~K~~~ll 352 (1050)
T TIGR02468 273 PKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRDKLEQLL 352 (1050)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEECccchhhhhhhhc
Confidence 112233333333322222111 1 2499999999877776665554 9999999975321110
Q ss_pred hhh-----hhhhhcc-cchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCC---------------------CCceeec
Q psy12587 113 QGS-----FLKSIYR-FPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLD---------------------HKCLDIL 165 (390)
Q Consensus 113 ~~~-----~~~~~~~-~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~---------------------~~~~~vi 165 (390)
..+ .....+. ......|..++..||.||+.|...++.+...|+.++ ..++.||
T Consensus 353 ~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VI 432 (1050)
T TIGR02468 353 KQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVI 432 (1050)
T ss_pred ccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEe
Confidence 000 0000111 111245788999999999999999998777775432 2389999
Q ss_pred CCCCCCCCCCCCCccc---------------------hhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcc
Q psy12587 166 YPSVYTEGLEKTTPEP---------------------IENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLS 224 (390)
Q Consensus 166 ~~~~~~~~~~~~~~~~---------------------~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~ 224 (390)
|||+|++.|.+..... ++..+ ...+.++|+++||+.+.||++.+|+|+..+++...
T Consensus 433 PpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~---~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~ 509 (1050)
T TIGR02468 433 PPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMRFF---TNPRKPMILALARPDPKKNITTLVKAFGECRPLRE 509 (1050)
T ss_pred CCCCcHHHccCCCccccchhcccccccccccchhhHHHHhhc---ccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhcc
Confidence 9999999887643211 11111 23356789999999999999999999999875322
Q ss_pred cccccceEEEEEcCCCCCCc---chhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc----ceEEeCCCCCCCC
Q psy12587 225 DEMKTHVKLVVAGGYDPHNI---ENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC----HCIIYTPSNEHFG 297 (390)
Q Consensus 225 ~~~~~~~~l~i~G~~~~~~~---~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a----dv~v~ps~~e~~~ 297 (390)
. .++. +|+|.++.... ....+..+++++++++++.++|.|.|+++..++..+|+.| |+|++||.+|+||
T Consensus 510 ~---~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFG 585 (1050)
T TIGR02468 510 L---ANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFG 585 (1050)
T ss_pred C---CCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCC
Confidence 1 1355 46676643211 1234567889999999999999999999999999999988 6999999999999
Q ss_pred ccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHH
Q psy12587 298 IVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQ 376 (390)
Q Consensus 298 ~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (390)
++++||||||+|||+|+.||..|++.++.+|+++++ |+++++++|.+++++++ .+++|++++++.+ ++|+|+.++++
T Consensus 586 LvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~Dpe-lr~~m~~~gr~~v-~~FSWe~ia~~ 663 (1050)
T TIGR02468 586 LTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQAIADALLKLVADKQ-LWAECRQNGLKNI-HLFSWPEHCKT 663 (1050)
T ss_pred HHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCHHHHHHHHHHHhhCHH-HHHHHHHHHHHHH-HHCCHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999 9999999999998 68999999999
Q ss_pred HHHHHHhhhhhc
Q psy12587 377 LNTIVNNMLDKK 388 (390)
Q Consensus 377 ~~~~~~~~~~~~ 388 (390)
+++.+..+..++
T Consensus 664 yl~~i~~~~~~~ 675 (1050)
T TIGR02468 664 YLSRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHhccC
Confidence 999999887553
No 10
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=7.2e-44 Score=320.65 Aligned_cols=345 Identities=18% Similarity=0.248 Sum_probs=260.0
Q ss_pred CCCcchhhhHhh-HhhhhcCCceeec---CC--ccccccCCCcceEEecccc-ccccchhhHHH--HHHHHHHHHHHHHH
Q psy12587 1 MLGATARLTITA-TAWGATGPRTTAH---DH--CFKETKDGTLPVKVIGDWL-PRNIFGKFYAL--CMYLRMIVIALYVA 71 (390)
Q Consensus 1 ~~GG~~~~~~~l-~~L~~~G~~V~~~---~~--~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 71 (390)
..||+|+++..+ +.|.. +||++ .. ...+....++.+++++... ....+.++..+ ..+...+.. ...
T Consensus 19 ~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 93 (380)
T PRK15484 19 GAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLDPLPYSQRILN--IAH 93 (380)
T ss_pred cccHHHHHHHHhhhhccC---CeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccCchhHHHHHHH--HHH
Confidence 369999999999 99953 88888 11 2222445567888873211 11111121111 111111111 011
Q ss_pred Hhh-cCCCEEEEcccccchhHHHh--hcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHH
Q psy12587 72 WYS-EKPDLVFCDLVSICIPILQA--KQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKS 148 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~~~~~~~~--~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 148 (390)
..+ .++|+||+|+........+. .+.|+++++|+... ...+.+++.++++|+..++
T Consensus 94 ~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~v~~~h~~~~---------------------~~~~~~~~~ii~~S~~~~~ 152 (380)
T PRK15484 94 KFTITKDSVIVIHNSMKLYRQIRERAPQAKLVMHMHNAFE---------------------PELLDKNAKIIVPSQFLKK 152 (380)
T ss_pred hcCCCCCcEEEEeCcHHhHHHHHhhCCCCCEEEEEecccC---------------------hhHhccCCEEEEcCHHHHH
Confidence 233 67999999985433322222 23799999996311 1123467999999999999
Q ss_pred HHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccc
Q psy12587 149 VVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 149 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
.+.+.++ ..++.++|||+|.+.+.+......++.++ ...+..+++|+||+.+.||++.+++|++.+.++.|+
T Consensus 153 ~~~~~~~---~~~i~vIpngvd~~~~~~~~~~~~~~~~~--~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~--- 224 (380)
T PRK15484 153 FYEERLP---NADISIVPNGFCLETYQSNPQPNLRQQLN--ISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSN--- 224 (380)
T ss_pred HHHhhCC---CCCEEEecCCCCHHHcCCcchHHHHHHhC--CCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCC---
Confidence 9888644 56899999999988776644444444444 223568899999999999999999999999988885
Q ss_pred cceEEEEEcCCCCCCc-chhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCC-CCCCccHHhhhhc
Q psy12587 229 THVKLVVAGGYDPHNI-ENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN-EHFGIVPIEAMFC 306 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~-~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~-e~~~~~~~Ea~a~ 306 (390)
++|+|+|+++.... +...|.+++++++++++ +++.|+|+++.+++..+|+.||++++||.+ |+||++++|||+|
T Consensus 225 --~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~ 300 (380)
T PRK15484 225 --LKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAA 300 (380)
T ss_pred --eEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHc
Confidence 99999998865322 23456678888887775 579999999999999999999999999985 9999999999999
Q ss_pred CCCEEEecCCCcccceecCcceee-ecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhh
Q psy12587 307 KRPVIAVNSGGPKESVVDGRTGFL-CES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNM 384 (390)
Q Consensus 307 G~pvi~~~~~~~~e~i~~~~~g~~-~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
|+|||+|+.+|.+|++.++.+|++ +++ |+++++++|.++++|++ . .++++++++.+.++|+|+.+++++.++|++.
T Consensus 301 G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~-~-~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 301 GKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPE-L-TQIAEQAKDFVFSKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred CCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHH-H-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999984 566 99999999999999887 5 6799999999889999999999999999875
Q ss_pred h
Q psy12587 385 L 385 (390)
Q Consensus 385 ~ 385 (390)
.
T Consensus 379 ~ 379 (380)
T PRK15484 379 F 379 (380)
T ss_pred c
Confidence 4
No 11
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.1e-44 Score=323.37 Aligned_cols=349 Identities=16% Similarity=0.153 Sum_probs=259.8
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--C--Ccc-ccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--D--HCF-KETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS- 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~--~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 74 (390)
.||+|+++.+| ++|.+.||+++++ . ... .+....++.+..+... ....+..+.... .+++
T Consensus 13 ~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~l~---------~~l~~ 79 (374)
T TIGR03088 13 VGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQ----PGKDVAVYPQLY---------RLLRQ 79 (374)
T ss_pred CCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCC----CCCChHHHHHHH---------HHHHH
Confidence 59999999999 9999999997666 1 111 1223345555555321 111111111111 2344
Q ss_pred cCCCEEEEcccccch--hHHHhhcccE-EEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHH
Q psy12587 75 EKPDLVFCDLVSICI--PILQAKQFKV-LFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQ 151 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~--~~~~~~~~~~-v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 151 (390)
.+||+||+|+..... .+.+..++|. +.+.|+.+........ ....++.+...+.+|.++++|+..++.+.
T Consensus 80 ~~~Divh~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~vs~~~~~~~~ 152 (374)
T TIGR03088 80 LRPDIVHTRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDGSN-------WKYRWLRRLYRPLIHHYVAVSRDLEDWLR 152 (374)
T ss_pred hCCCEEEEcchhHHHHHHHHHhcCCCeEEEeecCcccccchhhH-------HHHHHHHHHHHhcCCeEEEeCHHHHHHHH
Confidence 899999999854322 2233334553 4444543221111111 11234445566778999999999999998
Q ss_pred HHhccCCCCceeecCCCCCCCCCCCCCccc--hhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccccccc
Q psy12587 152 ATFRSLDHKCLDILYPSVYTEGLEKTTPEP--IENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKT 229 (390)
Q Consensus 152 ~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~ 229 (390)
+.++ .+..++.++|||+|.+.+.+..... ..+.. ...++.++++++||+.+.||++.+++|+..+.++.++ ...
T Consensus 153 ~~~~-~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~-~~~ 228 (374)
T TIGR03088 153 GPVK-VPPAKIHQIYNGVDTERFHPSRGDRSPILPPD--FFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPE-GAE 228 (374)
T ss_pred HhcC-CChhhEEEeccCccccccCCCccchhhhhHhh--cCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcc-ccc
Confidence 8764 3367899999999988776542111 11111 1234678999999999999999999999999877552 011
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
+++|+++|+|+.. +++++.++++++.+++.+.|+. .++.++|+.||++++||..||+|++++|||+||+|
T Consensus 229 ~~~l~i~G~g~~~--------~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~P 298 (374)
T TIGR03088 229 RLRLVIVGDGPAR--------GACEQMVRAAGLAHLVWLPGER--DDVPALMQALDLFVLPSLAEGISNTILEAMASGLP 298 (374)
T ss_pred ceEEEEecCCchH--------HHHHHHHHHcCCcceEEEcCCc--CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCC
Confidence 4899999998765 7899999999998999999965 45689999999999999999999999999999999
Q ss_pred EEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhh
Q psy12587 310 VIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNML 385 (390)
Q Consensus 310 vi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
||+|+.++.+|++.++.+|+++++ |+++++++|.+++++++ .+..+++++++.+.++|+|+.+++++.++|++++
T Consensus 299 vv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~-~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~ 374 (374)
T TIGR03088 299 VIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPA-ARRAHGAAGRARAEQQFSINAMVAAYAGLYDQLL 374 (374)
T ss_pred EEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998 99999999999999988 8999999999999899999999999999998864
No 12
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=5e-43 Score=328.82 Aligned_cols=297 Identities=16% Similarity=0.208 Sum_probs=231.6
Q ss_pred cCCCEEEEcccccchh--HHH-------hhcccEEEEeecCCccccchhhhhh------hhc---cc----chh--hHHH
Q psy12587 75 EKPDLVFCDLVSICIP--ILQ-------AKQFKVLFYCHYPDQLLSKQGSFLK------SIY---RF----PLN--KLEE 130 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~--~~~-------~~~~~~v~~~h~~~~~~~~~~~~~~------~~~---~~----~~~--~~~~ 130 (390)
.+|||||+|+|.+++. ++. +.++|+|+|+|+..+.......... ..+ .. ... .+.+
T Consensus 609 ~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK 688 (977)
T PLN02939 609 KKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVK 688 (977)
T ss_pred CCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHH
Confidence 6999999999987763 222 1227999999987543211110000 000 00 001 1224
Q ss_pred HHhcCcceEEEccHhHHHHHHHHhc-------cCCCCceeecCCCCCCCCCCCCCc-------------------cchhh
Q psy12587 131 WTTCKADKIVVNSEFTKSVVQATFR-------SLDHKCLDILYPSVYTEGLEKTTP-------------------EPIEN 184 (390)
Q Consensus 131 ~~~~~ad~ii~~s~~~~~~~~~~~~-------~~~~~~~~vi~~~~~~~~~~~~~~-------------------~~~~~ 184 (390)
..+..||.|+++|+..++.+...++ .....++.+|+||+|.+.|.+... ..+++
T Consensus 689 ~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRk 768 (977)
T PLN02939 689 GAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRK 768 (977)
T ss_pred HHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHH
Confidence 4566799999999999999876322 123578999999999998876532 23555
Q ss_pred hcCCCCC--CCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCC
Q psy12587 185 VLNPLPG--KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKL 262 (390)
Q Consensus 185 ~~~~l~~--~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l 262 (390)
.++ ++. .+.++|+++||+.+.||++.+++|+..+.+. +++|+|+|+|+.. .|...++.+++++++
T Consensus 769 elG-L~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~-------dvqLVIvGdGp~~-----~~e~eL~~La~~l~l 835 (977)
T PLN02939 769 QLG-LSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAEL-------GGQFVLLGSSPVP-----HIQREFEGIADQFQS 835 (977)
T ss_pred HhC-CCcccccceEEEEeecCCcccChHHHHHHHHHHhhc-------CCEEEEEeCCCcH-----HHHHHHHHHHHHcCC
Confidence 565 443 2568899999999999999999999988653 3899999999653 445788899999998
Q ss_pred CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceec---------CcceeeecC
Q psy12587 263 SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD---------GRTGFLCES 333 (390)
Q Consensus 263 ~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~---------~~~g~~~~~ 333 (390)
.++|.|+|..++.....+|+.||++++||.+|+||++++|||+||+|+|++++||..|.+.+ +.+|+++++
T Consensus 836 ~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~ 915 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLT 915 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecC
Confidence 89999999999887789999999999999999999999999999999999999999998865 578999998
Q ss_pred -CHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 334 -NEEAFAKAMKKIVD----NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 334 -~~~~l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
|+++++++|.++++ +++ .+++|++++. .+.|||+.++++|.++|++++.+.
T Consensus 916 ~D~eaLa~AL~rAL~~~~~dpe-~~~~L~~~am---~~dFSWe~~A~qYeeLY~~ll~~~ 971 (977)
T PLN02939 916 PDEQGLNSALERAFNYYKRKPE-VWKQLVQKDM---NIDFSWDSSASQYEELYQRAVARA 971 (977)
T ss_pred CCHHHHHHHHHHHHHHhccCHH-HHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999998875 667 8888887653 378999999999999999988653
No 13
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.7e-43 Score=326.19 Aligned_cols=363 Identities=16% Similarity=0.171 Sum_probs=258.0
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCccccc-----------------------cCCCcceEEecccc--ccc-cchhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKET-----------------------KDGTLPVKVIGDWL--PRN-IFGKF 54 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~-----------------------~~~~~~i~~~~~~~--~~~-~~~~~ 54 (390)
+||...++..| ++|+++||+|+++.+.+... ..+++.+..+.... .+. .++..
T Consensus 16 ~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v~~~~~~~~~~~y~~~ 95 (466)
T PRK00654 16 TGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLIDAPHLFDRPSGYGYP 95 (466)
T ss_pred cCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEEeCHHHcCCCCCCCCc
Confidence 79999999999 99999999999882222111 12345555543211 111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHhh--cCCCEEEEcccccchhHHHhh--------cccEEEEeecCCccccchhhhhhhh----
Q psy12587 55 YALCMYLRMIVIALYVAWYS--EKPDLVFCDLVSICIPILQAK--------QFKVLFYCHYPDQLLSKQGSFLKSI---- 120 (390)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~--~~~Dvi~~~~~~~~~~~~~~~--------~~~~v~~~h~~~~~~~~~~~~~~~~---- 120 (390)
....++. .+.......+.+ .+|||||+|.+.+++....++ ++|+|+|+|+...............
T Consensus 96 d~~~r~~-~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~ 174 (466)
T PRK00654 96 DNGERFA-FFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGELGLPA 174 (466)
T ss_pred ChHHHHH-HHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCCh
Confidence 1111111 111111111222 599999999987766444332 4899999998653211110000000
Q ss_pred ----cccc----hhhHHHHHhcCcceEEEccHhHHHHHHHHh-c-------cCCCCceeecCCCCCCCCCCCCCc-----
Q psy12587 121 ----YRFP----LNKLEEWTTCKADKIVVNSEFTKSVVQATF-R-------SLDHKCLDILYPSVYTEGLEKTTP----- 179 (390)
Q Consensus 121 ----~~~~----~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~-~-------~~~~~~~~vi~~~~~~~~~~~~~~----- 179 (390)
...+ ...+.+..++.||.|+++|+..++.+.... + ..+..++.+||||+|.+.+.+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~ 254 (466)
T PRK00654 175 EAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAA 254 (466)
T ss_pred HHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCccccc
Confidence 0000 113446678999999999999998887521 1 123568999999999998876432
Q ss_pred --------------cchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcc
Q psy12587 180 --------------EPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIE 245 (390)
Q Consensus 180 --------------~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~ 245 (390)
..+++.++ ++.++.++|+++||+.+.||++.+++|++++.++ +++|+|+|+|+.
T Consensus 255 ~~~~~~~~~k~~~k~~l~~~~g-l~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~-------~~~lvivG~g~~---- 322 (466)
T PRK00654 255 NYSADDLEGKAENKRALQERFG-LPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ-------GGQLVLLGTGDP---- 322 (466)
T ss_pred ccChhhhhchHHHHHHHHHHhC-CCCCCCcEEEEeeccccccChHHHHHHHHHHHhc-------CCEEEEEecCcH----
Confidence 12344444 4434678899999999999999999999998764 389999998753
Q ss_pred hhHHHHHHHHHHHHcCCCCcEEE-ecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceec
Q psy12587 246 NVEYYKELGVLVKKLKLSDNVLF-LTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD 324 (390)
Q Consensus 246 ~~~y~~~~~~~~~~~~l~~~v~~-~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~ 324 (390)
.+.+++++++++++ .++.+ .|+ +.+.+..+|+.||++++||.+|+||++++|||+||+|+|+++.||+.|.+.+
T Consensus 323 --~~~~~l~~l~~~~~--~~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~ 397 (466)
T PRK00654 323 --ELEEAFRALAARYP--GKVGVQIGY-DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVID 397 (466)
T ss_pred --HHHHHHHHHHHHCC--CcEEEEEeC-CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeec
Confidence 34478888888886 45654 565 6666678999999999999999999999999999999999999999999988
Q ss_pred C------cceeeecC-CHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 325 G------RTGFLCES-NEEAFAKAMKKIVD---NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 325 ~------~~g~~~~~-~~~~l~~~i~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
+ .+|+++++ |+++++++|.++++ +++ .+.++++++. .+.|||+.+++++.++|+++++
T Consensus 398 ~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~-~~~~~~~~~~---~~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 398 YNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPP-LWRALQRQAM---AQDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred CCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHH-HHHHHHHHHh---ccCCChHHHHHHHHHHHHHHhh
Confidence 8 89999999 99999999999876 566 6777877764 3689999999999999999875
No 14
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.1e-43 Score=317.62 Aligned_cols=348 Identities=21% Similarity=0.289 Sum_probs=262.7
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCC--ccc-cccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDH--CFK-ETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EK 76 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~--~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (390)
.||+++++.++ ++|.+.||+|+++.. ... .....++.+..... . ..+.... ..+...... ....+++ .+
T Consensus 11 ~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~~~~~-~l~~~i~~~~ 84 (371)
T cd04962 11 YGGSGVVATELGKALARRGHEVHFITSSRPFRLDEYSPNIFFHEVEV--P--QYPLFQY-PPYDLALAS-KIAEVAKRYK 84 (371)
T ss_pred CCCccchHHHHHHHHHhcCCceEEEecCCCcchhhhccCeEEEEecc--c--ccchhhc-chhHHHHHH-HHHHHHhcCC
Confidence 69999999999 999999999998821 111 11112222222211 0 0000000 000011111 1123445 89
Q ss_pred CCEEEEcccccch----hHHHhh---cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 77 PDLVFCDLVSICI----PILQAK---QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 77 ~Dvi~~~~~~~~~----~~~~~~---~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
||+||+|.+.... ...+.. ++|+|+++|+.+...... ......+.+..++++|.++++|+..++.
T Consensus 85 ~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--------~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 156 (371)
T cd04962 85 LDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQ--------DPSFQPATRFSIEKSDGVTAVSESLRQE 156 (371)
T ss_pred ccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccc--------cccchHHHHHHHhhCCEEEEcCHHHHHH
Confidence 9999999743221 122222 489999999754321111 1122345677889999999999999999
Q ss_pred HHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccccccc
Q psy12587 150 VQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKT 229 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~ 229 (390)
+.+.+. . ..++.++|||++...+.+......+..++ ...+.++++++|++.+.||++.+++++..+.++.
T Consensus 157 ~~~~~~-~-~~~i~vi~n~~~~~~~~~~~~~~~~~~~~--~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~~------ 226 (371)
T cd04962 157 TYELFD-I-TKEIEVIPNFVDEDRFRPKPDEALKRRLG--APEGEKVLIHISNFRPVKRIDDVIRIFAKVRKEV------ 226 (371)
T ss_pred HHHhcC-C-cCCEEEecCCcCHhhcCCCchHHHHHhcC--CCCCCeEEEEecccccccCHHHHHHHHHHHHhcC------
Confidence 888753 2 57899999999987766544333333433 2336788999999999999999999999997653
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
+++++++|.++.. +.+++.++++++.++|.+.|+.+ ++.++|+.||++++||..|++|++++|||++|+|
T Consensus 227 ~~~l~i~G~g~~~--------~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~P 296 (371)
T cd04962 227 PARLLLVGDGPER--------SPAERLARELGLQDDVLFLGKQD--HVEELLSIADLFLLPSEKESFGLAALEAMACGVP 296 (371)
T ss_pred CceEEEEcCCcCH--------HHHHHHHHHcCCCceEEEecCcc--cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCC
Confidence 3899999998765 78888999999988999999875 5689999999999999999999999999999999
Q ss_pred EEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhh
Q psy12587 310 VIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNM 384 (390)
Q Consensus 310 vi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
||+++.++..|++.++.+|+++++ |++++++++.+++++++ .+.+|++++++.+.++|+|+.+++++.++|+++
T Consensus 297 vI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~-~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 297 VVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDE-LWQEFSRAARNRAAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred EEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999998 99999999999999998 999999999999889999999999999999864
No 15
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1e-43 Score=328.48 Aligned_cols=352 Identities=14% Similarity=0.144 Sum_probs=256.8
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecC--CccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHD--HCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKP 77 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (390)
+||+++++.++ ++|.++||+|+++. ....+. ..++.+..... .+........ ..+ ........+++ .+|
T Consensus 73 ~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~-~~g~~v~~~~~-~~~~~~~~~~--~~~---~~~~~l~~~i~~~kp 145 (465)
T PLN02871 73 VSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQE-FHGAKVIGSWS-FPCPFYQKVP--LSL---ALSPRIISEVARFKP 145 (465)
T ss_pred cccHHHHHHHHHHHHHHCCCeEEEEecCCCCCcc-ccCceeeccCC-cCCccCCCce--eec---cCCHHHHHHHHhCCC
Confidence 59999999999 99999999999882 111111 12222221111 0000000000 000 00001112444 899
Q ss_pred CEEEEcccccch----hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHH
Q psy12587 78 DLVFCDLVSICI----PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQAT 153 (390)
Q Consensus 78 Dvi~~~~~~~~~----~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 153 (390)
|+||+|++.... .+.+..++|+|+++|+......... ......+. ...+++++++.+|.++++|+..++.+.+.
T Consensus 146 DiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~-~~~~~~~~-~~~~~r~~~~~ad~ii~~S~~~~~~l~~~ 223 (465)
T PLN02871 146 DLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRY-TFSWLVKP-MWDIIRFLHRAADLTLVTSPALGKELEAA 223 (465)
T ss_pred CEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcc-cchhhHHH-HHHHHHHHHhhCCEEEECCHHHHHHHHHc
Confidence 999999854222 1234445999999996432211100 01111111 12455778899999999999999999876
Q ss_pred hccCCCCceeecCCCCCCCCCCCCCc-cchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceE
Q psy12587 154 FRSLDHKCLDILYPSVYTEGLEKTTP-EPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVK 232 (390)
Q Consensus 154 ~~~~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~ 232 (390)
+ ..+.+++.++|||+|.+.+.+... ...+..+. ....+.++|+|+|++.+.||++.++++++.+. +++
T Consensus 224 ~-~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~-~~~~~~~~i~~vGrl~~~K~~~~li~a~~~~~---------~~~ 292 (465)
T PLN02871 224 G-VTAANRIRVWNKGVDSESFHPRFRSEEMRARLS-GGEPEKPLIVYVGRLGAEKNLDFLKRVMERLP---------GAR 292 (465)
T ss_pred C-CCCcCeEEEeCCccCccccCCccccHHHHHHhc-CCCCCCeEEEEeCCCchhhhHHHHHHHHHhCC---------CcE
Confidence 3 223578999999999988765432 22333321 01235678999999999999999999988753 389
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
|+|+|+|+.. ++++++++. .+|.|+|+++++++..+|+.||++|+||..|++|++++|||+||+|||+
T Consensus 293 l~ivG~G~~~--------~~l~~~~~~----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~ 360 (465)
T PLN02871 293 LAFVGDGPYR--------EELEKMFAG----TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVA 360 (465)
T ss_pred EEEEeCChHH--------HHHHHHhcc----CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEE
Confidence 9999988654 777777764 4799999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccceec---CcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHH-HHHhhhhh
Q psy12587 313 VNSGGPKESVVD---GRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNT-IVNNMLDK 387 (390)
Q Consensus 313 ~~~~~~~e~i~~---~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 387 (390)
++.++..|++.+ +.+|+++++ |+++++++|.+++++++ .+++|++++++.+ ++|+|+.+++++.+ .|++++..
T Consensus 361 s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~-~~~~~~~~a~~~~-~~fsw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 361 ARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPE-LRERMGAAAREEV-EKWDWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred cCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 999999998 99999999999999998 9999999999988 68999999999998 69887653
No 16
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=6.8e-43 Score=319.22 Aligned_cols=364 Identities=19% Similarity=0.272 Sum_probs=267.8
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCC--c--cc--cccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDH--C--FK--ETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~--~--~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
.||+++++.+| ++|.++||+|+++.. . .. .....++.+..+... +...... ..+..+...+.......+.+
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 97 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAG-PAEYLPK-EELWPYLDEFADDLLRFLRR 97 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccc-cccCCCh-hhcchhHHHHHHHHHHHHHh
Confidence 58999999999 999999999998811 1 11 122334555544221 1111110 11111111122222222222
Q ss_pred c--CCCEEEEcccccchhHH---HhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 75 E--KPDLVFCDLVSICIPIL---QAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 75 ~--~~Dvi~~~~~~~~~~~~---~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
. +||+||+|.+..++... +..++|+|++.|+.......................++.+++.+|.++++|+..++.
T Consensus 98 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 177 (398)
T cd03800 98 EGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEAEE 177 (398)
T ss_pred cCCCccEEEEecCccchHHHHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHHHH
Confidence 4 99999999865544333 333489999999754322111100000011122345678899999999999999999
Q ss_pred HHHHhccCCCCceeecCCCCCCCCCCCCCccch-hhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccc
Q psy12587 150 VQATFRSLDHKCLDILYPSVYTEGLEKTTPEPI-ENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
+.+.+... ..++.++|||+|.+.+.+...... +.... ...++++|+|+||+...||++.+++++..+.++.++
T Consensus 178 ~~~~~~~~-~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~--- 251 (398)
T cd03800 178 LYSLYGAY-PRRIRVVPPGVDLERFTPYGRAEARRARLL--RDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRER--- 251 (398)
T ss_pred HHHHcccc-ccccEEECCCCCccceecccchhhHHHhhc--cCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCC---
Confidence 88876432 456999999999887765432211 22221 234678899999999999999999999999987765
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
++|+++|++..... ..+...++.+++.+++.+++.++|+++.+++..+++.||++++||..|++|++++|||++|+
T Consensus 252 --~~l~i~G~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~ 327 (398)
T cd03800 252 --ANLVIVGGPRDDIL--AMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGL 327 (398)
T ss_pred --eEEEEEECCCCcch--hhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCC
Confidence 99999998875421 22335578888889988999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 309 PVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 309 pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
|||+++.++..+++.++.+|+++++ |+++++++|.+++++++ .++++++++++.+.++|||+.+++++.
T Consensus 328 Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~-~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 328 PVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPA-LRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred CEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999999999999999998 99999999999999988 999999999999989999999999875
No 17
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=8.3e-43 Score=317.34 Aligned_cols=360 Identities=18% Similarity=0.214 Sum_probs=265.3
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCCE
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPDL 79 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv 79 (390)
.||+++++.+| ++|.++ |+|+++..........++.+.....+... ......+......+. .... .+||+
T Consensus 15 ~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~di 86 (388)
T TIGR02149 15 YGGAGVHVEELTRELARL-MDVDVRCFGDQRFDSEGLTVKGYRPWSEL------KEANKALGTFSVDLA-MANDPVDADV 86 (388)
T ss_pred cccHhHHHHHHHHHHHHh-cCeeEEcCCCchhcCCCeEEEEecChhhc------cchhhhhhhhhHHHH-HhhCCCCCCe
Confidence 49999999999 999886 66555511111122334555544322111 111111111111111 1122 57999
Q ss_pred EEEcccccchh---HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhcc
Q psy12587 80 VFCDLVSICIP---ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRS 156 (390)
Q Consensus 80 i~~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~ 156 (390)
||+|++...+. +.+..++|+|++.|+............... ..+..++++..++.+|.++++|+.+++.+.+.+++
T Consensus 87 vh~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~ 165 (388)
T TIGR02149 87 VHSHTWYTFLAGHLAKKLYDKPLVVTAHSLEPLRPWKEEQLGGG-YKLSSWAEKTAIEAADRVIAVSGGMREDILKYYPD 165 (388)
T ss_pred EeecchhhhhHHHHHHHhcCCCEEEEeecccccccccccccccc-hhHHHHHHHHHHhhCCEEEEccHHHHHHHHHHcCC
Confidence 99998654432 223445999999998643211100000111 12345678888999999999999999999988755
Q ss_pred CCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEE
Q psy12587 157 LDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVA 236 (390)
Q Consensus 157 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~ 236 (390)
.+..++.++|||+|.+.+.+......+..++ ...+.++++|+||+.+.||++.++++++.+.. +++++++
T Consensus 166 ~~~~~i~vi~ng~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~--------~~~l~i~ 235 (388)
T TIGR02149 166 LDPEKVHVIYNGIDTKEYKPDDGNVVLDRYG--IDRSRPYILFVGRITRQKGVPHLLDAVHYIPK--------DVQVVLC 235 (388)
T ss_pred CCcceEEEecCCCChhhcCCCchHHHHHHhC--CCCCceEEEEEcccccccCHHHHHHHHHHHhh--------cCcEEEE
Confidence 5567899999999998877654444455554 23367789999999999999999999998854 3788888
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHcCC-CCcEEEe-cCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 237 GGYDPHNIENVEYYKELGVLVKKLKL-SDNVLFL-TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 237 G~~~~~~~~~~~y~~~~~~~~~~~~l-~~~v~~~-g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
|+++.. ..+.+++++.+.+++. .+++.+. |.++.+++..+|+.||++++||..|++|++++|||+||+|||+++
T Consensus 236 g~g~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~ 311 (388)
T TIGR02149 236 AGAPDT----PEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASA 311 (388)
T ss_pred eCCCCc----HHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeC
Confidence 876543 2344667777777665 2346664 679999999999999999999999999999999999999999999
Q ss_pred CCCcccceecCcceeeecC-CH------HHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhh
Q psy12587 315 SGGPKESVVDGRTGFLCES-NE------EAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNML 385 (390)
Q Consensus 315 ~~~~~e~i~~~~~g~~~~~-~~------~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
.++..|++.++.+|+++++ |. ++++++|.+++++++ .+++|++++++.+.++|+|+.+++++.++|++++
T Consensus 312 ~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~-~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 312 TGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPE-LAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred CCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999988 87 999999999999998 9999999999999899999999999999999864
No 18
>PLN02316 synthase/transferase
Probab=100.00 E-value=2e-42 Score=330.68 Aligned_cols=355 Identities=13% Similarity=0.080 Sum_probs=259.6
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCccccc--------------------------cCCCcceEEeccc---cccc-c
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKET--------------------------KDGTLPVKVIGDW---LPRN-I 50 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~--------------------------~~~~~~i~~~~~~---~~~~-~ 50 (390)
+||...++..| ++|+++||+|.++.+.+... ...++.+..+... ..+. .
T Consensus 603 vGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~GV~vyfl~~~~~~F~r~~~ 682 (1036)
T PLN02316 603 VGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEGLSVYFLEPQNGMFWAGCV 682 (1036)
T ss_pred cCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECCcEEEEEeccccccCCCCC
Confidence 69999999999 99999999998882222110 0112333333211 0000 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh--cCCCEEEEcccccchhHHHh---------hcccEEEEeecCCccccchhhhhhh
Q psy12587 51 FGKFYALCMYLRMIVIALYVAWYS--EKPDLVFCDLVSICIPILQA---------KQFKVLFYCHYPDQLLSKQGSFLKS 119 (390)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dvi~~~~~~~~~~~~~~---------~~~~~v~~~h~~~~~~~~~~~~~~~ 119 (390)
+.......++..+... ....+.+ .+|||||+|+|.+++....+ .++|+|+++|+.....
T Consensus 683 Yg~~Dd~~RF~~F~~A-ale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p~V~TiHnl~~~~--------- 752 (1036)
T PLN02316 683 YGCRNDGERFGFFCHA-ALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKARVVFTIHNLEFGA--------- 752 (1036)
T ss_pred CCchhHHHHHHHHHHH-HHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCCEEEEeCCcccch---------
Confidence 1111112222222111 1112222 68999999998766543322 2279999999854210
Q ss_pred hcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhcc-CCCCceeecCCCCCCCCCCCCCc-------------------
Q psy12587 120 IYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRS-LDHKCLDILYPSVYTEGLEKTTP------------------- 179 (390)
Q Consensus 120 ~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~------------------- 179 (390)
...+..+..||.|+++|+..++.+...+.- ....++.+|+||||.+.|.+...
T Consensus 753 -------n~lk~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~ 825 (1036)
T PLN02316 753 -------NHIGKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAA 825 (1036)
T ss_pred -------hHHHHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhh
Confidence 112356788999999999999988774321 12478999999999987765321
Q ss_pred -cchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHH
Q psy12587 180 -EPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVK 258 (390)
Q Consensus 180 -~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~ 258 (390)
..+++.++ ++..+.++|+++||+.+.||++.+++|+..+.+. +++|+|+|+|+.. .+...++++++
T Consensus 826 k~~Lr~~lG-L~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~-------~~qlVIvG~Gpd~-----~~e~~l~~La~ 892 (1036)
T PLN02316 826 KEALQQRLG-LKQADLPLVGIITRLTHQKGIHLIKHAIWRTLER-------NGQVVLLGSAPDP-----RIQNDFVNLAN 892 (1036)
T ss_pred HHHHHHHhC-CCcccCeEEEEEeccccccCHHHHHHHHHHHhhc-------CcEEEEEeCCCCH-----HHHHHHHHHHH
Confidence 12344554 4433678999999999999999999999998753 3899999998653 45578889999
Q ss_pred HcCC--CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecC-----------
Q psy12587 259 KLKL--SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDG----------- 325 (390)
Q Consensus 259 ~~~l--~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~----------- 325 (390)
++++ +++|.|.+..+......+|+.||++++||.+|+||++.+|||+||+|+|++++||++|.+.++
T Consensus 893 ~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g 972 (1036)
T PLN02316 893 QLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQG 972 (1036)
T ss_pred HhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccc
Confidence 8865 578999887766544589999999999999999999999999999999999999999999874
Q ss_pred --cceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 326 --RTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 326 --~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
.+|+++++ |+++++.+|.+++.+..+....++..+++.+.+.|||+..+++|.++|+++.+
T Consensus 973 ~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~~ 1036 (1036)
T PLN02316 973 LEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSARK 1036 (1036)
T ss_pred cCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhC
Confidence 58999999 99999999999998743156667888888888899999999999999998753
No 19
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.5e-41 Score=308.87 Aligned_cols=364 Identities=14% Similarity=0.108 Sum_probs=247.2
Q ss_pred cchhhhHhh-HhhhhcCCceeecCCccccccCCCcceEEeccccccc--cchhhHHHHHHHH---HHHHHHHHHHhh-cC
Q psy12587 4 ATARLTITA-TAWGATGPRTTAHDHCFKETKDGTLPVKVIGDWLPRN--IFGKFYALCMYLR---MIVIALYVAWYS-EK 76 (390)
Q Consensus 4 G~~~~~~~l-~~L~~~G~~V~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~-~~ 76 (390)
+.+-...+| ++|.++||+|++++.........++.+..+....... ...........+. ...........+ .+
T Consensus 8 ~~p~~~~~la~~L~~~G~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (396)
T cd03818 8 NFPGQFRHLAPALAAQGHEVVFLTEPNAAPPPGGVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARALLALRAKGFR 87 (396)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEecCCCCCCCCCeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344456789 9999999999998222221111256666664332211 1111111111111 111111111134 78
Q ss_pred CCEEEEccccc-chhHHHhhc-ccEEEEeecCCccccc----hhhhhhhh--ccc--chhhHHHHHhcCcceEEEccHhH
Q psy12587 77 PDLVFCDLVSI-CIPILQAKQ-FKVLFYCHYPDQLLSK----QGSFLKSI--YRF--PLNKLEEWTTCKADKIVVNSEFT 146 (390)
Q Consensus 77 ~Dvi~~~~~~~-~~~~~~~~~-~~~v~~~h~~~~~~~~----~~~~~~~~--~~~--~~~~~~~~~~~~ad~ii~~s~~~ 146 (390)
||+||+|.... ++.+..... .|+|.++|.+...... ......+. ... ....+....++.+|.++++|+..
T Consensus 88 pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~ 167 (396)
T cd03818 88 PDVIVAHPGWGETLFLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNALILLALAQADAGVSPTRWQ 167 (396)
T ss_pred CCEEEECCccchhhhHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhhHhHHHHHhCCEEECCCHHH
Confidence 99999998543 333333323 7888777532111000 00000000 000 01112456789999999999999
Q ss_pred HHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeec-ccccCCHHHHHHHHHHHHhhccc
Q psy12587 147 KSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINR-YERKKNLELAIYSLNSLRSRLSD 225 (390)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~-~~~~K~~~~ll~a~~~l~~~~~~ 225 (390)
++.+.+.++ +++.+||||+|.+.+.+.............-..+.++++|+|| +.+.||++.+++|+..+.++.++
T Consensus 168 ~~~~~~~~~----~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~ 243 (396)
T cd03818 168 RSTFPAELR----SRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPD 243 (396)
T ss_pred HhhCcHhhc----cceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCC
Confidence 998877543 6899999999998887643321111000001135678899997 99999999999999999888775
Q ss_pred ccccceEEEEEcCCCCCC----cchhHHHHHHHHHHH-HcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccH
Q psy12587 226 EMKTHVKLVVAGGYDPHN----IENVEYYKELGVLVK-KLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVP 300 (390)
Q Consensus 226 ~~~~~~~l~i~G~~~~~~----~~~~~y~~~~~~~~~-~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~ 300 (390)
++|+|+|++.... .....+.+.+.+... +++ .++|.|+|+++++++..+|+.||++++||..|++|+++
T Consensus 244 -----~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~l 317 (396)
T cd03818 244 -----ARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLD-LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSL 317 (396)
T ss_pred -----cEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccC-cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHH
Confidence 9999999753210 001112222222222 222 47899999999999999999999999999999999999
Q ss_pred HhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 301 IEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 301 ~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
+||||||+|||+|+.++..|++.++.+|+++++ |+++++++|.+++++++ .+.+|++++++.+.++|+|+.++++|.
T Consensus 318 lEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~-~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 318 LEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDPA-RRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 999999999999999999999999999999998 99999999999999998 999999999999988899999999886
No 20
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=4.3e-42 Score=310.44 Aligned_cols=279 Identities=22% Similarity=0.274 Sum_probs=232.8
Q ss_pred Hhh-cCCCEEEEcccccchhHH---HhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHH
Q psy12587 72 WYS-EKPDLVFCDLVSICIPIL---QAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTK 147 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~~~~~~---~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 147 (390)
+++ .+||+||+|....+..+. +..++|+|+++|+.+...........+ ......+++.+++.+|.++++|+.++
T Consensus 77 ~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~ii~~s~~~~ 154 (367)
T cd05844 77 LLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTFHGFDATTSLALLLRSR--WALYARRRRRLARRAALFIAVSQFIR 154 (367)
T ss_pred HHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEEEEeCccccccchhhcccc--hhHHHHHHHHHHHhcCEEEECCHHHH
Confidence 455 999999999755444433 334499999999754322211111111 22234566778899999999999999
Q ss_pred HHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccccc
Q psy12587 148 SVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEM 227 (390)
Q Consensus 148 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~ 227 (390)
+.+.+. +.+..++.++|||+|.+.+.+.. ...++..++++|++.+.||++.+++|+..+.++.++
T Consensus 155 ~~~~~~--~~~~~~i~vi~~g~d~~~~~~~~-----------~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~-- 219 (367)
T cd05844 155 DRLLAL--GFPPEKVHVHPIGVDTAKFTPAT-----------PARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPE-- 219 (367)
T ss_pred HHHHHc--CCCHHHeEEecCCCCHHhcCCCC-----------CCCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCC--
Confidence 998875 44467899999999987765432 223567899999999999999999999999888775
Q ss_pred ccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCC------CCCCCccHH
Q psy12587 228 KTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS------NEHFGIVPI 301 (390)
Q Consensus 228 ~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~------~e~~~~~~~ 301 (390)
++|+++|.++.. +++++.++++++.++|.|+|+++++++..+|+.||++++||. .|++|++++
T Consensus 220 ---~~l~ivG~g~~~--------~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~ 288 (367)
T cd05844 220 ---VRLVIIGDGPLL--------AALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLL 288 (367)
T ss_pred ---eEEEEEeCchHH--------HHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHH
Confidence 999999987643 788999999998899999999999999999999999999986 589999999
Q ss_pred hhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy12587 302 EAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNT 379 (390)
Q Consensus 302 Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
|||+||+|||+++.++..|++.++.+|+++++ |+++++++|.+++++++ .+.+++.++++.+.++|+|+..++++.+
T Consensus 289 EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~-~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 289 EAQASGVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPD-LRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHcCCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 99999999999999999999999999999988 99999999999999998 9999999999999899999999998875
No 21
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=9e-42 Score=316.38 Aligned_cols=362 Identities=19% Similarity=0.181 Sum_probs=259.4
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCcccc------------------------------ccCCCcceEEeccc--ccc
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKE------------------------------TKDGTLPVKVIGDW--LPR 48 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~------------------------------~~~~~~~i~~~~~~--~~~ 48 (390)
+||...++..| ++|+++||+|.++.+.+.. ....++.+..+... ..+
T Consensus 16 ~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~r 95 (473)
T TIGR02095 16 TGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVEGVPVYFIDNPSLFDR 95 (473)
T ss_pred cCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEECCceEEEEECHHHcCC
Confidence 79999999999 9999999999888221111 11123444444221 111
Q ss_pred c--cch--hhHHHHHHHHHHHHHHHHHHh-h-cCCCEEEEcccccchhHHHh---hc---ccEEEEeecCCccccchhhh
Q psy12587 49 N--IFG--KFYALCMYLRMIVIALYVAWY-S-EKPDLVFCDLVSICIPILQA---KQ---FKVLFYCHYPDQLLSKQGSF 116 (390)
Q Consensus 49 ~--~~~--~~~~~~~~~~~~~~~~~~~~~-~-~~~Dvi~~~~~~~~~~~~~~---~~---~~~v~~~h~~~~~~~~~~~~ 116 (390)
. .++ ......++..+. ......+. . .+|||||+|.+.+++....+ .+ +|+|+++|+...........
T Consensus 96 ~~~~y~~~~~d~~~r~~~f~-~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~~~~~~v~TiH~~~~~g~~~~~~ 174 (473)
T TIGR02095 96 PGGIYGDDYPDNAERFAFFS-RAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRPNPIKTVFTIHNLAYQGVFPADD 174 (473)
T ss_pred CCCCCCCCCCCHHHHHHHHH-HHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccCCCCCEEEEcCCCccCCcCCHHH
Confidence 0 111 111222222111 11111122 2 79999999998766543322 22 89999999865321111111
Q ss_pred hhh------hcc-cc-----hhhHHHHHhcCcceEEEccHhHHHHHHHHhcc--------CCCCceeecCCCCCCCCCCC
Q psy12587 117 LKS------IYR-FP-----LNKLEEWTTCKADKIVVNSEFTKSVVQATFRS--------LDHKCLDILYPSVYTEGLEK 176 (390)
Q Consensus 117 ~~~------~~~-~~-----~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~--------~~~~~~~vi~~~~~~~~~~~ 176 (390)
... .+. .. .-.+.+..++.||.++++|+..++.+.....+ .+..++.+|+||+|.+.+.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p 254 (473)
T TIGR02095 175 FSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNP 254 (473)
T ss_pred HHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCC
Confidence 110 000 00 11235677899999999999999887652111 12468999999999998875
Q ss_pred CCc-------------------cchhhhcCCCCC-CCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEE
Q psy12587 177 TTP-------------------EPIENVLNPLPG-KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVA 236 (390)
Q Consensus 177 ~~~-------------------~~~~~~~~~l~~-~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~ 236 (390)
... ..+++.++ ++. .+.++|+++||+.+.||++.+++|+..+.+. +++|+|+
T Consensus 255 ~~~~~~~~~~~~~~~~~k~~~k~~l~~~~g-l~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~-------~~~lvi~ 326 (473)
T TIGR02095 255 ATDPYLKANYSADDLAGKAENKEALQEELG-LPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL-------GGQLVVL 326 (473)
T ss_pred CCCcccccCcCccchhhhhhhHHHHHHHcC-CCccCCCCEEEEEecCccccChHHHHHHHHHHHHc-------CcEEEEE
Confidence 422 12344444 332 3678999999999999999999999999764 3899999
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC
Q psy12587 237 GGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 237 G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~ 316 (390)
|+|+. .+.+++++++++++ .++.+.+..+++++..+|+.||++++||.+|++|++++|||+||+|||+++.+
T Consensus 327 G~g~~------~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~g 398 (473)
T TIGR02095 327 GTGDP------ELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTG 398 (473)
T ss_pred CCCCH------HHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCC
Confidence 99853 34477888887764 67888888888888899999999999999999999999999999999999999
Q ss_pred CcccceecC------cceeeecC-CHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhh
Q psy12587 317 GPKESVVDG------RTGFLCES-NEEAFAKAMKKIVD----NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNM 384 (390)
Q Consensus 317 ~~~e~i~~~------~~g~~~~~-~~~~l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
|..|++.++ .+|+++++ |+++++++|.++++ +++ .++++++++. .+.|||+.+++++.++|+++
T Consensus 399 g~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~-~~~~~~~~~~---~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 399 GLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPS-LWEALQKNAM---SQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred CccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHh---ccCCCcHHHHHHHHHHHHhC
Confidence 999999988 89999999 99999999999887 777 8888988775 36899999999999999864
No 22
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=1.9e-41 Score=311.21 Aligned_cols=292 Identities=16% Similarity=0.161 Sum_probs=224.1
Q ss_pred cCCCEEEEcccccchhHHHhh-----cccEEEEeecCCccccchhhhh------hhhcc----cc--hhhHHHHHhcCcc
Q psy12587 75 EKPDLVFCDLVSICIPILQAK-----QFKVLFYCHYPDQLLSKQGSFL------KSIYR----FP--LNKLEEWTTCKAD 137 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~-----~~~~v~~~h~~~~~~~~~~~~~------~~~~~----~~--~~~~~~~~~~~ad 137 (390)
.+|||||+|+|.+++....+. ++|+|+|+|+............ ...+. .. ...+.+..++.||
T Consensus 132 ~~pDIiH~Hdw~~~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad 211 (485)
T PRK14099 132 FVPDIVHAHDWQAGLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLAD 211 (485)
T ss_pred CCCCEEEECCcHHHHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcC
Confidence 799999999987766443222 2799999998643221111000 00000 00 0124677899999
Q ss_pred eEEEccHhHHHHHHHHhcc--------CCCCceeecCCCCCCCCCCCCCc-------------------cchhhhcCCCC
Q psy12587 138 KIVVNSEFTKSVVQATFRS--------LDHKCLDILYPSVYTEGLEKTTP-------------------EPIENVLNPLP 190 (390)
Q Consensus 138 ~ii~~s~~~~~~~~~~~~~--------~~~~~~~vi~~~~~~~~~~~~~~-------------------~~~~~~~~~l~ 190 (390)
.|+++|+..++.+.+.+.+ .+.+++.+|+||+|.+.|.+... ..+++.++ ++
T Consensus 212 ~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~g-l~ 290 (485)
T PRK14099 212 RITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFG-LD 290 (485)
T ss_pred eeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcC-CC
Confidence 9999999999998764221 12578999999999998876432 22344444 33
Q ss_pred C-CCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcE-EE
Q psy12587 191 G-KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNV-LF 268 (390)
Q Consensus 191 ~-~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v-~~ 268 (390)
. .+.++|+++||+.+.||++.+++|+..+.+. +++|+|+|+|+. .+.+++++++++++ +++ .+
T Consensus 291 ~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~-------~~~lvivG~G~~------~~~~~l~~l~~~~~--~~v~~~ 355 (485)
T PRK14099 291 PDPDALLLGVISRLSWQKGLDLLLEALPTLLGE-------GAQLALLGSGDA------ELEARFRAAAQAYP--GQIGVV 355 (485)
T ss_pred cccCCcEEEEEecCCccccHHHHHHHHHHHHhc-------CcEEEEEecCCH------HHHHHHHHHHHHCC--CCEEEE
Confidence 3 2567889999999999999999999998754 389999999863 34477888887764 445 68
Q ss_pred ecCCChHHHHHHH-HhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecC---------cceeeecC-CHHH
Q psy12587 269 LTSPSDAAKISLF-KFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDG---------RTGFLCES-NEEA 337 (390)
Q Consensus 269 ~g~~~~~e~~~~~-~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~---------~~g~~~~~-~~~~ 337 (390)
+|+ ++++..+| +.||++++||.+|+||++.+|||+||+|+|++++||.+|.+.++ .+|+++++ |+++
T Consensus 356 ~G~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~ 433 (485)
T PRK14099 356 IGY--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADA 433 (485)
T ss_pred eCC--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHH
Confidence 897 56778877 57999999999999999999999999999999999999998775 58999999 9999
Q ss_pred HHHHHHH---HhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 338 FAKAMKK---IVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 338 l~~~i~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
++++|.+ ++++++ .+++++++++ .++|||+..++++.++|+++++++
T Consensus 434 La~ai~~a~~l~~d~~-~~~~l~~~~~---~~~fSw~~~a~~y~~lY~~l~~~~ 483 (485)
T PRK14099 434 LAAALRKTAALFADPV-AWRRLQRNGM---TTDVSWRNPAQHYAALYRSLVAER 483 (485)
T ss_pred HHHHHHHHHHHhcCHH-HHHHHHHHhh---hhcCChHHHHHHHHHHHHHHHhhh
Confidence 9999997 677887 8999998886 378999999999999999998754
No 23
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=5.5e-41 Score=313.91 Aligned_cols=373 Identities=18% Similarity=0.206 Sum_probs=258.2
Q ss_pred CCcchhhhHhh-Hhh--------hhcCCc----eeecCCccc-----------ccc--CCCcceEEeccccccc-----c
Q psy12587 2 LGATARLTITA-TAW--------GATGPR----TTAHDHCFK-----------ETK--DGTLPVKVIGDWLPRN-----I 50 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L--------~~~G~~----V~~~~~~~~-----------~~~--~~~~~i~~~~~~~~~~-----~ 50 (390)
+||.-.++.++ ++| +++||+ |++++.... +.. ..++.|.+++. .+.. .
T Consensus 278 tGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~~~~~~I~rvp~-g~~~~~~~~~ 356 (784)
T TIGR02470 278 TGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYGTEHAWILRVPF-RTENGIILRN 356 (784)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccccCCCceEEEEecC-CCCccccccc
Confidence 59999999999 874 689994 557621111 111 13444544431 1111 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh---cCCCEEEEcccccchhHHHhh---cccEEEEeecCCccccchhhhhhh----h
Q psy12587 51 FGKFYALCMYLRMIVIALYVAWYS---EKPDLVFCDLVSICIPILQAK---QFKVLFYCHYPDQLLSKQGSFLKS----I 120 (390)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~Dvi~~~~~~~~~~~~~~~---~~~~v~~~h~~~~~~~~~~~~~~~----~ 120 (390)
+-.-..++.++..+.......+.. .+||+||+|.+..++.+..++ ++|.+.+.|+.............. .
T Consensus 357 ~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~ 436 (784)
T TIGR02470 357 WISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQCTIAHALEKTKYPDSDIYWQEFEDK 436 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEEEECCcchhhcccccccccccchhH
Confidence 112233445555444444433332 579999999988766555444 499999999763321111110000 0
Q ss_pred cccchh-hHHHHHhcCcceEEEccHhHHHH----HHH-----------Hhc---cC--CCCceeecCCCCCCCCCCCCCc
Q psy12587 121 YRFPLN-KLEEWTTCKADKIVVNSEFTKSV----VQA-----------TFR---SL--DHKCLDILYPSVYTEGLEKTTP 179 (390)
Q Consensus 121 ~~~~~~-~~~~~~~~~ad~ii~~s~~~~~~----~~~-----------~~~---~~--~~~~~~vi~~~~~~~~~~~~~~ 179 (390)
++...+ ..+..+++.||.||+.|...... +.+ .|+ ++ +..++.++|+|+|.+.|.+...
T Consensus 437 ~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~ 516 (784)
T TIGR02470 437 YHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSD 516 (784)
T ss_pred HHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCc
Confidence 010001 11457788999999999754331 111 111 11 2468999999999987766433
Q ss_pred cch-------------------hhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCC
Q psy12587 180 EPI-------------------ENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYD 240 (390)
Q Consensus 180 ~~~-------------------~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~ 240 (390)
... ++.++-+...++++|+++||+.+.||++.+++|+.++....+ ++.|+|+|++.
T Consensus 517 ~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~-----~~~LVIVGGg~ 591 (784)
T TIGR02470 517 KEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRE-----LVNLVVVAGKL 591 (784)
T ss_pred hhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCC-----CeEEEEEeCCc
Confidence 111 123331223466789999999999999999999988765433 38999999875
Q ss_pred CC----CcchhHHHHHHHHHHHHcCCCCcEEEecCC-ChHHHHHHHH----hcceEEeCCCCCCCCccHHhhhhcCCCEE
Q psy12587 241 PH----NIENVEYYKELGVLVKKLKLSDNVLFLTSP-SDAAKISLFK----FCHCIIYTPSNEHFGIVPIEAMFCKRPVI 311 (390)
Q Consensus 241 ~~----~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~-~~~e~~~~~~----~adv~v~ps~~e~~~~~~~Ea~a~G~pvi 311 (390)
.. ..+...+..++.++++++++.++|.|+|.. +..+..++|+ .+|++++||.+|+||++++|||+||+|||
T Consensus 592 ~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVV 671 (784)
T TIGR02470 592 DAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTF 671 (784)
T ss_pred ccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEE
Confidence 31 122334667889999999999999999975 4444455554 35799999999999999999999999999
Q ss_pred EecCCCcccceecCcceeeecC-CHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy12587 312 AVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIV----DNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 312 ~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
+|+.||..|++.++.+|+++++ |+++++++|.+++ +|++ .++++++++++.+.++|||+.+++++.++.
T Consensus 672 AT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~-~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 672 ATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPS-YWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred EcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999876 5787 999999999999989999999999998875
No 24
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=3.6e-41 Score=306.48 Aligned_cols=352 Identities=12% Similarity=0.085 Sum_probs=246.7
Q ss_pred CcchhhhHhh-HhhhhcCCceeec--CCcc--cc-ccCCCcceEEeccccccccchhhHHHHHHHHHHH---HHHHHHHh
Q psy12587 3 GATARLTITA-TAWGATGPRTTAH--DHCF--KE-TKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIV---IALYVAWY 73 (390)
Q Consensus 3 GG~~~~~~~l-~~L~~~G~~V~~~--~~~~--~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 73 (390)
+|.+.++.++ ++|+++||+|+++ .... .+ ....++.+..+.. +.........+..+..... ......++
T Consensus 14 ~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (415)
T cd03816 14 IGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPP--PPQRLNKLPFLLFAPLKVLWQFFSLLWLLY 91 (415)
T ss_pred cCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCC--CccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777889 9999999999998 1111 12 2334455555432 1101111122222221111 11111234
Q ss_pred h-cCCCEEEEcccccc------hhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhH
Q psy12587 74 S-EKPDLVFCDLVSIC------IPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFT 146 (390)
Q Consensus 74 ~-~~~Dvi~~~~~~~~------~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 146 (390)
+ .+||+||+|.++.. ..+.+..+.|+|+++|+..................+..++++++++.||.++++|+.+
T Consensus 92 ~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~ 171 (415)
T cd03816 92 KLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGRLADYNLCVTKAM 171 (415)
T ss_pred hcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhhcCCEeeecCHHH
Confidence 5 78999999874421 1123334599999999753211100101112223456788899999999999999999
Q ss_pred HHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhc--------------C--CCCCCCCeEEEEeecccccCCHH
Q psy12587 147 KSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVL--------------N--PLPGKEDIVFLSINRYERKKNLE 210 (390)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~--------------~--~l~~~~~~~i~~~g~~~~~K~~~ 210 (390)
++.+.+ ++ .+.+++.+||||. ...|.+.......... + .+..++..+++++||+.+.||++
T Consensus 172 ~~~l~~-~~-~~~~ki~vI~Ng~-~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~ 248 (415)
T cd03816 172 KEDLQQ-FN-NWKIRATVLYDRP-PEQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFG 248 (415)
T ss_pred HHHHHh-hh-ccCCCeeecCCCC-HHHceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHH
Confidence 999987 43 4478999999994 3444443221111100 0 01233557788999999999999
Q ss_pred HHHHHHHHHHhh------cccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc
Q psy12587 211 LAIYSLNSLRSR------LSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC 284 (390)
Q Consensus 211 ~ll~a~~~l~~~------~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 284 (390)
.+++|++.+.+. .| +++|+|+|+|+.. ++++++++++++++.+.+.|+++.+++.++|+.|
T Consensus 249 ~li~A~~~l~~~~~~~~~~~-----~i~l~ivG~G~~~--------~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~a 315 (415)
T cd03816 249 ILLDALVAYEKSAATGPKLP-----KLLCIITGKGPLK--------EKYLERIKELKLKKVTIRTPWLSAEDYPKLLASA 315 (415)
T ss_pred HHHHHHHHHHHhhcccccCC-----CEEEEEEecCccH--------HHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhC
Confidence 999999998753 24 4999999999875 8999999999986545556789999999999999
Q ss_pred ceEEeCCC---CCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcC---ChhHHHHHHH
Q psy12587 285 HCIIYTPS---NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDN---DGNIIQQFSQ 358 (390)
Q Consensus 285 dv~v~ps~---~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~ 358 (390)
|++++|+. .+++|++++||||||+|||+++.++..|+++++.+|++++ |+++++++|.++++| ++ .+++|++
T Consensus 316 Dv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~-d~~~la~~i~~ll~~~~~~~-~~~~m~~ 393 (415)
T cd03816 316 DLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFG-DSEELAEQLIDLLSNFPNRG-KLNSLKK 393 (415)
T ss_pred CEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEEC-CHHHHHHHHHHHHhcCCCHH-HHHHHHH
Confidence 99987532 4789999999999999999999999999999999999997 999999999999999 67 8999999
Q ss_pred HHHHHHhhhcCHHHHHHH
Q psy12587 359 FGFNRFNEKFSFQAFSIQ 376 (390)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~ 376 (390)
++++.. .++|+....+
T Consensus 394 ~~~~~~--~~~~~~~~~~ 409 (415)
T cd03816 394 GAQEES--ELRWDENWDR 409 (415)
T ss_pred HHHHhh--hcCHHHHHHH
Confidence 999886 5566654433
No 25
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=6.3e-41 Score=301.53 Aligned_cols=330 Identities=21% Similarity=0.239 Sum_probs=249.6
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecC--C-ccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHD--H-CFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EK 76 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~--~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (390)
.||+++++.++ ++|.++||+|+++. . ........++.+..+... .... +..+. .... ...+++ .+
T Consensus 9 ~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~-~~~~-----l~~~~~~~~ 78 (355)
T cd03819 9 SGGVERGTLELARALVERGHRSLVASAGGRLVAELEAEGSRHIKLPFI-SKNP---LRILL-NVAR-----LRRLIREEK 78 (355)
T ss_pred cCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhcCCeEEEcccc-ccch---hhhHH-HHHH-----HHHHHHHcC
Confidence 49999999999 99999999998882 1 112222334444433211 1111 11111 1111 112344 99
Q ss_pred CCEEEEcccccchhH---HHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHH
Q psy12587 77 PDLVFCDLVSICIPI---LQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQAT 153 (390)
Q Consensus 77 ~Dvi~~~~~~~~~~~---~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 153 (390)
||+||+|+....+.. .+..++|+++++|+...... ....+++++|.++++|+...+.+.+.
T Consensus 79 ~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----------------~~~~~~~~~~~vi~~s~~~~~~~~~~ 142 (355)
T cd03819 79 VDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNF----------------RYNAIMARGDRVIAVSNFIADHIREN 142 (355)
T ss_pred CCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhHH----------------HHHHHHHhcCEEEEeCHHHHHHHHHh
Confidence 999999985433322 23345999999997532110 23445678999999999999999876
Q ss_pred hccCCCCceeecCCCCCCCCCCCCCccc-----hhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccc
Q psy12587 154 FRSLDHKCLDILYPSVYTEGLEKTTPEP-----IENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 154 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
++ .+.+++.++|||+|...+.+..... .++.++ ..++.++++++||+.+.||++.+++++..+++..++
T Consensus 143 ~~-~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~--- 216 (355)
T cd03819 143 YG-VDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWP--LPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPD--- 216 (355)
T ss_pred cC-CChhhEEEecCCccccccCccccchHHHHHHHHHcC--CCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCC---
Confidence 65 4467899999999988776543211 222222 234678899999999999999999999999887664
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCC-CCCCCCccHHhhhhcC
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTP-SNEHFGIVPIEAMFCK 307 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps-~~e~~~~~~~Ea~a~G 307 (390)
++++++|.++.. ..+...+.+.++++++.++|.++|+ .+++.++|+.||++++|| ..|++|++++|||+||
T Consensus 217 --~~l~ivG~~~~~----~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G 288 (355)
T cd03819 217 --VHLLIVGDAQGR----RFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMG 288 (355)
T ss_pred --eEEEEEECCccc----chHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcC
Confidence 999999988653 2445667778888888889999999 556789999999999999 7899999999999999
Q ss_pred CCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHhhhcCHHH
Q psy12587 308 RPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD-NDGNIIQQFSQFGFNRFNEKFSFQA 372 (390)
Q Consensus 308 ~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
+|||+++.++..|++.++.+|+++++ |+++++++|..++. +++ .+.++++++++.+.++|+|+.
T Consensus 289 ~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~-~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 289 RPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPE-GRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred CCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHH-HHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999989999988 99999999976655 666 999999999999999999985
No 26
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=1.3e-40 Score=310.05 Aligned_cols=361 Identities=16% Similarity=0.162 Sum_probs=255.5
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCcccc------------------------------ccCCCcceEEeccccc--c
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKE------------------------------TKDGTLPVKVIGDWLP--R 48 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~------------------------------~~~~~~~i~~~~~~~~--~ 48 (390)
+||.+.++..| ++|+++||+|+++.+.+.. ...+++.+..+..... +
T Consensus 15 ~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~l~~~~~~~~ 94 (476)
T cd03791 15 TGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDGVPVYFLDNPDYFDR 94 (476)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCCceEEEEcChHHcCC
Confidence 79999999999 9999999999988211111 1123455555432111 1
Q ss_pred c------cchhhHHHHHHHHHHHHHHHHHHhh--cCCCEEEEcccccchhHHH---h------hcccEEEEeecCCcccc
Q psy12587 49 N------IFGKFYALCMYLRMIVIALYVAWYS--EKPDLVFCDLVSICIPILQ---A------KQFKVLFYCHYPDQLLS 111 (390)
Q Consensus 49 ~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dvi~~~~~~~~~~~~~---~------~~~~~v~~~h~~~~~~~ 111 (390)
. .........++..+... ....+.+ .+|||||+|++.+++.... . .++|+|+++|+......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~f~~~-~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~~v~tiH~~~~~g~ 173 (476)
T cd03791 95 PGLYDDSGYDYEDNAERFALFSRA-ALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIKTVFTIHNLAYQGV 173 (476)
T ss_pred CCCCCccCCCCccHHHHHHHHHHH-HHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCCEEEEeCCCCCCCC
Confidence 0 01111111222211111 1111222 7999999999876553322 1 25899999998654321
Q ss_pred chhhhhhhh-------------cccchhhHHHHHhcCcceEEEccHhHHHHHHHH--------hccCCCCceeecCCCCC
Q psy12587 112 KQGSFLKSI-------------YRFPLNKLEEWTTCKADKIVVNSEFTKSVVQAT--------FRSLDHKCLDILYPSVY 170 (390)
Q Consensus 112 ~~~~~~~~~-------------~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~--------~~~~~~~~~~vi~~~~~ 170 (390)
......... .......+++..+..||.++++|+..++.+.+. +...+..++.+|+||+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid 253 (476)
T cd03791 174 FPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGID 253 (476)
T ss_pred CCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCc
Confidence 111100000 000112466788999999999999999888641 11122579999999999
Q ss_pred CCCCCCCCccc-------------------hhhhcCCCC-CCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccc
Q psy12587 171 TEGLEKTTPEP-------------------IENVLNPLP-GKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTH 230 (390)
Q Consensus 171 ~~~~~~~~~~~-------------------~~~~~~~l~-~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~ 230 (390)
.+.+.+..... +++.++ ++ ..+.++|+++||+.+.||++.+++++..+.++ +
T Consensus 254 ~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g-~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~-------~ 325 (476)
T cd03791 254 YDVWNPATDPHLPANYSADDLEGKAENKAALQEELG-LPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLEL-------G 325 (476)
T ss_pred CcccCccccchhhhcCCccccccHHHHHHHHHHHcC-CCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHc-------C
Confidence 98887653321 334443 22 34778899999999999999999999998865 3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCE
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPV 310 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pv 310 (390)
++|+++|.|+. .+.+.++++++++ .+++.+.+..+++++..+|+.||++++||.+|++|++++|||+||+||
T Consensus 326 ~~lvi~G~g~~------~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pv 397 (476)
T cd03791 326 GQLVILGSGDP------EYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVP 397 (476)
T ss_pred cEEEEEecCCH------HHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCC
Confidence 89999999853 3446677777765 467887766677777899999999999999999999999999999999
Q ss_pred EEecCCCcccceecCc------ceeeecC-CHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy12587 311 IAVNSGGPKESVVDGR------TGFLCES-NEEAFAKAMKKIVD---NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTI 380 (390)
Q Consensus 311 i~~~~~~~~e~i~~~~------~g~~~~~-~~~~l~~~i~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
|+++.||..|++.++. +|+++++ |+++++++|.++++ +++ .+.++++++. .+.|||+.+++++.++
T Consensus 398 I~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~---~~~fsw~~~a~~~~~~ 473 (476)
T cd03791 398 IVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPE-AWRKLQRNAM---AQDFSWDRSAKEYLEL 473 (476)
T ss_pred EECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHH-HHHHHHHHHh---ccCCChHHHHHHHHHH
Confidence 9999999999999987 9999999 99999999999875 445 6667766654 3579999999999999
Q ss_pred HHh
Q psy12587 381 VNN 383 (390)
Q Consensus 381 ~~~ 383 (390)
|++
T Consensus 474 y~~ 476 (476)
T cd03791 474 YRS 476 (476)
T ss_pred HhC
Confidence 863
No 27
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=2e-40 Score=304.76 Aligned_cols=292 Identities=17% Similarity=0.172 Sum_probs=225.1
Q ss_pred cCCCEEEEcccccchhHHHh----------hcccEEEEeecCCccccchhhhhh-----hhcccc-----hhhHHHHHhc
Q psy12587 75 EKPDLVFCDLVSICIPILQA----------KQFKVLFYCHYPDQLLSKQGSFLK-----SIYRFP-----LNKLEEWTTC 134 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~----------~~~~~v~~~h~~~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~ 134 (390)
.+|||||+|+|.+++....+ .++|+|+|+|+............. ...... ...+.+..+.
T Consensus 140 ~~pDiiH~hdw~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~ 219 (489)
T PRK14098 140 WKPDIIHCHDWYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVE 219 (489)
T ss_pred CCCCEEEecCcHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHH
Confidence 58999999998766543322 148999999986432111000000 000000 1234567789
Q ss_pred CcceEEEccHhHHHHHHHH--hc-cC------CCCceeecCCCCCCCCCCCCCccc-------------------hhhhc
Q psy12587 135 KADKIVVNSEFTKSVVQAT--FR-SL------DHKCLDILYPSVYTEGLEKTTPEP-------------------IENVL 186 (390)
Q Consensus 135 ~ad~ii~~s~~~~~~~~~~--~~-~~------~~~~~~vi~~~~~~~~~~~~~~~~-------------------~~~~~ 186 (390)
.||.|+++|+..++.+.+. ++ ++ ...++.+|+||+|.+.+.+..... +++.+
T Consensus 220 ~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~l 299 (489)
T PRK14098 220 HADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEV 299 (489)
T ss_pred hcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHh
Confidence 9999999999999988752 11 11 157899999999999887654321 22333
Q ss_pred CCCC-CCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCc
Q psy12587 187 NPLP-GKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDN 265 (390)
Q Consensus 187 ~~l~-~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~ 265 (390)
+ ++ ..+.++|+++||+.+.||++.+++|+..+.+. +++|+|+|+|+. .|.++++++++++ +++
T Consensus 300 g-l~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~-------~~~lvivG~G~~------~~~~~l~~l~~~~--~~~ 363 (489)
T PRK14098 300 G-LPFDEETPLVGVIINFDDFQGAELLAESLEKLVEL-------DIQLVICGSGDK------EYEKRFQDFAEEH--PEQ 363 (489)
T ss_pred C-CCCccCCCEEEEeccccccCcHHHHHHHHHHHHhc-------CcEEEEEeCCCH------HHHHHHHHHHHHC--CCC
Confidence 3 33 23567899999999999999999999998764 499999998864 3457888888887 478
Q ss_pred EEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceec----CcceeeecC-CHHHHHH
Q psy12587 266 VLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD----GRTGFLCES-NEEAFAK 340 (390)
Q Consensus 266 v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~----~~~g~~~~~-~~~~l~~ 340 (390)
|.+.|.++++++..+|+.||++++||..|++|++.+|||+||+|+|+++.||..|.+.+ +.+|+++++ |++++++
T Consensus 364 V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ 443 (489)
T PRK14098 364 VSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVA 443 (489)
T ss_pred EEEEEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998864 679999999 9999999
Q ss_pred HHHHHh---cCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 341 AMKKIV---DNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 341 ~i~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
+|.+++ ++++ .++++++++ ..+.|||+..++++.++|+++++
T Consensus 444 ai~~~l~~~~~~~-~~~~~~~~~---~~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 444 KLGEALALYHDEE-RWEELVLEA---MERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHHHHHHcCHH-HHHHHHHHH---hcCCCChHHHHHHHHHHHHHHhc
Confidence 999865 5666 777776655 34789999999999999998864
No 28
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3e-40 Score=298.09 Aligned_cols=339 Identities=17% Similarity=0.156 Sum_probs=245.9
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CC-ccc-cccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-c
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DH-CFK-ETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-E 75 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~-~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (390)
.||+++++.++ ++|.++||+|+++ +. ... .....++.+..++.... .........+.. .+. .+.+ .
T Consensus 14 ~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~---~~~-~~~~~~ 85 (363)
T cd04955 14 YGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKETEYNGVRLIHIPAPEI----GGLGTIIYDILA---ILH-ALFVKR 85 (363)
T ss_pred cCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcccccCCceEEEcCCCCc----cchhhhHHHHHH---HHH-HHhccC
Confidence 59999999999 9999999999988 11 111 22334555555432110 111111111111 111 1112 5
Q ss_pred CCCEEEEcccccch--hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHH
Q psy12587 76 KPDLVFCDLVSICI--PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQAT 153 (390)
Q Consensus 76 ~~Dvi~~~~~~~~~--~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 153 (390)
++|+||...+.... ...+..+.|++++.|+....... .....+.+..+.++..++.+|.++++|+..++.+.+.
T Consensus 86 ~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~----~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 161 (363)
T cd04955 86 DIDHVHALGPAIAPFLPLLRLKGKKVVVNMDGLEWKRAK----WGRPAKRYLKFGEKLAVKFADRLIADSPGIKEYLKEK 161 (363)
T ss_pred CeEEEEecCccHHHHHHHHHhcCCCEEEEccCcceeecc----cccchhHHHHHHHHHHHhhccEEEeCCHHHHHHHHHh
Confidence 66666665544322 22233359999999975432111 1112233455677888999999999999999999877
Q ss_pred hccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEE
Q psy12587 154 FRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKL 233 (390)
Q Consensus 154 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l 233 (390)
++. .. .++|||+|...+.+ ........+ . .+...++++|++.+.||++.+++|++++.. + ++|
T Consensus 162 ~~~---~~-~~i~ngv~~~~~~~--~~~~~~~~~--~-~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~---~-----~~l 224 (363)
T cd04955 162 YGR---DS-TYIPYGADHVVSSE--EDEILKKYG--L-EPGRYYLLVGRIVPENNIDDLIEAFSKSNS---G-----KKL 224 (363)
T ss_pred cCC---CC-eeeCCCcChhhcch--hhhhHHhcC--C-CCCcEEEEEecccccCCHHHHHHHHHhhcc---C-----ceE
Confidence 662 23 99999999876553 111222221 1 233457899999999999999999998865 2 899
Q ss_pred EEEcCCCCCCcchhHHHHHHHHHHH-HcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCC-CCCCccHHhhhhcCCCEE
Q psy12587 234 VVAGGYDPHNIENVEYYKELGVLVK-KLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN-EHFGIVPIEAMFCKRPVI 311 (390)
Q Consensus 234 ~i~G~~~~~~~~~~~y~~~~~~~~~-~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~-e~~~~~~~Ea~a~G~pvi 311 (390)
+++|+++.. ..+.+.+. .+++.++|.++|+++++++..++++||++++||.. |++|++++|||+||+|||
T Consensus 225 ~ivG~~~~~--------~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI 296 (363)
T cd04955 225 VIVGNADHN--------TPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVL 296 (363)
T ss_pred EEEcCCCCc--------chHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEE
Confidence 999998654 44444444 56778899999999999999999999999999998 999999999999999999
Q ss_pred EecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 312 AVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 312 ~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+|+.++..|++.+ +|.++++ +. ++++|.+++++++ .+.++++++++.+.++|||+.+++++.++|+
T Consensus 297 ~s~~~~~~e~~~~--~g~~~~~~~~--l~~~i~~l~~~~~-~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 297 ASDNPFNREVLGD--KAIYFKVGDD--LASLLEELEADPE-EVSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred EecCCccceeecC--CeeEecCchH--HHHHHHHHHhCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999866 7888886 44 9999999999998 8999999999999888999999999999874
No 29
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.9e-41 Score=310.60 Aligned_cols=285 Identities=20% Similarity=0.214 Sum_probs=236.0
Q ss_pred cCCCEEEEcccccc-hh---HHHhhcccEEEEeecCCccccc--------hhhhhhhhcccchhhHHHHHhcCcceEEEc
Q psy12587 75 EKPDLVFCDLVSIC-IP---ILQAKQFKVLFYCHYPDQLLSK--------QGSFLKSIYRFPLNKLEEWTTCKADKIVVN 142 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~-~~---~~~~~~~~~v~~~h~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 142 (390)
.++|+||+|+...+ +. +.+..++|+|++.|+....... .....++.+..++..+++.+++.||.|+++
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii~~ 251 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRITTL 251 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEEec
Confidence 68999999985332 22 2233449999999985321100 012233333445567788899999999999
Q ss_pred cHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhh
Q psy12587 143 SEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSR 222 (390)
Q Consensus 143 s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~ 222 (390)
|+..++...+. +.+.+++.+||||+|.+.+.+.... . ...+.++|+++||+.+.||++.+++|++.+.++
T Consensus 252 s~~~~~~~~~~--g~~~~ki~vIpNgid~~~f~~~~~~-----~---~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~ 321 (475)
T cd03813 252 YEGNRERQIED--GADPEKIRVIPNGIDPERFAPARRA-----R---PEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKK 321 (475)
T ss_pred CHHHHHHHHHc--CCCHHHeEEeCCCcCHHHcCCcccc-----c---cCCCCcEEEEEeccccccCHHHHHHHHHHHHHh
Confidence 99998876653 3446799999999999877654321 0 224678999999999999999999999999988
Q ss_pred cccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHh
Q psy12587 223 LSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIE 302 (390)
Q Consensus 223 ~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~E 302 (390)
.|+ ++++|+|+++. +..|.++++++++++++.++|.|+| ..++.++|+.+|++++||..|++|++++|
T Consensus 322 ~p~-----~~l~IvG~g~~----~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlE 389 (475)
T cd03813 322 IPD-----AEGWVIGPTDE----DPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILE 389 (475)
T ss_pred CCC-----eEEEEECCCCc----ChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCchhhcCChHHHH
Confidence 875 99999998853 2367789999999999999999999 45678999999999999999999999999
Q ss_pred hhhcCCCEEEecCCCcccceec------CcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHH
Q psy12587 303 AMFCKRPVIAVNSGGPKESVVD------GRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSI 375 (390)
Q Consensus 303 a~a~G~pvi~~~~~~~~e~i~~------~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (390)
||+||+|||+|+.++.+|++.+ |.+|+++++ |+++++++|.++++|++ .++++++++++.+.+.|+|+.+++
T Consensus 390 Ama~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~-~~~~~~~~a~~~v~~~~s~~~~~~ 468 (475)
T cd03813 390 AMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPE-LRRAMGEAGRKRVERYYTLERMID 468 (475)
T ss_pred HHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999999988 569999999 99999999999999999 999999999999999999999999
Q ss_pred HHHHHHH
Q psy12587 376 QLNTIVN 382 (390)
Q Consensus 376 ~~~~~~~ 382 (390)
++.++|+
T Consensus 469 ~y~~lY~ 475 (475)
T cd03813 469 SYRRLYL 475 (475)
T ss_pred HHHHHhC
Confidence 9999884
No 30
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=7.7e-41 Score=301.91 Aligned_cols=350 Identities=17% Similarity=0.126 Sum_probs=242.0
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec-CCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH-DHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPD 78 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D 78 (390)
.||+++++.++ +.|.+.||+|+++ ...........-.+.............. ....+....... ...... .+||
T Consensus 11 ~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~D 87 (372)
T cd03792 11 GGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADIELSEE--EKEIYLEWNEEN-AERPLLDLDAD 87 (372)
T ss_pred CCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCCCCCHH--HHHHHHHHHHHH-hccccccCCCC
Confidence 69999999999 9999999999887 1111110000001111000000000010 011111111000 111233 7899
Q ss_pred EEEEcccccchhH-HHhh-cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhcc
Q psy12587 79 LVFCDLVSICIPI-LQAK-QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRS 156 (390)
Q Consensus 79 vi~~~~~~~~~~~-~~~~-~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~ 156 (390)
+||+|++...... +... ++|+|+++|+...... .. .....+..++++|.+++.|+.. ... .
T Consensus 88 vv~~h~~~~~~~~~~~~~~~~~~i~~~H~~~~~~~------~~-----~~~~~~~~~~~~d~~i~~~~~~---~~~---~ 150 (372)
T cd03792 88 VVVIHDPQPLALPLFKKKRGRPWIWRCHIDLSSPN------RR-----VWDFLQPYIEDYDAAVFHLPEY---VPP---Q 150 (372)
T ss_pred EEEECCCCchhHHHhhhcCCCeEEEEeeeecCCCc------HH-----HHHHHHHHHHhCCEEeecHHHh---cCC---C
Confidence 9999986533222 2222 4899999996432110 11 1122355677899999888322 222 2
Q ss_pred CCCCceeecCCCCCCCCCC--CCC---ccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccce
Q psy12587 157 LDHKCLDILYPSVYTEGLE--KTT---PEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHV 231 (390)
Q Consensus 157 ~~~~~~~vi~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~ 231 (390)
.+..++ ++|||+|..... ... ....++.++ ...+.++|+++||+.+.||++.++++++.+.+..++ +
T Consensus 151 ~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~-----~ 222 (372)
T cd03792 151 VPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYG--IDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPD-----P 222 (372)
T ss_pred CCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhC--CCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCC-----C
Confidence 223455 999999975311 111 123344444 234678899999999999999999999999887665 9
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC--ChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP--SDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~--~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
+|+++|+++....+. .+.++++.+..++.++|.+.|.. +++++..+|+.||++++||..||||++++|||+||+|
T Consensus 223 ~l~i~G~g~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~P 299 (372)
T cd03792 223 QLVLVGSGATDDPEG---WIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKP 299 (372)
T ss_pred EEEEEeCCCCCCchh---HHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCC
Confidence 999999987532211 13344555456777889999886 8899999999999999999999999999999999999
Q ss_pred EEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhh
Q psy12587 310 VIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNM 384 (390)
Q Consensus 310 vi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
||+|+.++..+++.++.+|++++ +.++++.+|.+++++++ .+++|++++++.+.++|+|+.+++++.++|+++
T Consensus 300 vv~s~~~~~~~~i~~~~~g~~~~-~~~~~a~~i~~ll~~~~-~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 300 VIAGPVGGIPLQIEDGETGFLVD-TVEEAAVRILYLLRDPE-LRRKMGANAREHVRENFLITRHLKDYLYLISKL 372 (372)
T ss_pred EEEcCCCCchhhcccCCceEEeC-CcHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhC
Confidence 99999999999999999999988 77889999999999988 999999999999888999999999999999863
No 31
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.7e-40 Score=309.91 Aligned_cols=357 Identities=13% Similarity=0.135 Sum_probs=253.4
Q ss_pred CCcchhhhHhh-HhhhhcCC--------------ceeec--C--C---cc-ccccCCCcceEEeccccccc------cch
Q psy12587 2 LGATARLTITA-TAWGATGP--------------RTTAH--D--H---CF-KETKDGTLPVKVIGDWLPRN------IFG 52 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~--------------~V~~~--~--~---~~-~~~~~~~~~i~~~~~~~~~~------~~~ 52 (390)
.||+|+++.+| .+|.+.++ .|.++ . . .+ ......++.+..+....... ...
T Consensus 293 ~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~~l~~~~~~~~~~~~~~~~ 372 (694)
T PRK15179 293 AGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVSVYSDMQAWGGCEFSSLLA 372 (694)
T ss_pred CCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEEEeccCCccCcccccccch
Confidence 69999999999 99999854 35543 1 1 11 12335678888774321110 001
Q ss_pred hhHHHHH----HHHHHHHHHHHHHhh-cCCCEEEEcccccch---hHHHhhcccEEE-EeecCCccccchhhhhhhhccc
Q psy12587 53 KFYALCM----YLRMIVIALYVAWYS-EKPDLVFCDLVSICI---PILQAKQFKVLF-YCHYPDQLLSKQGSFLKSIYRF 123 (390)
Q Consensus 53 ~~~~~~~----~~~~~~~~~~~~~~~-~~~Dvi~~~~~~~~~---~~~~~~~~~~v~-~~h~~~~~~~~~~~~~~~~~~~ 123 (390)
.+..+.. ....... ....+++ .+|||||+|.....+ .+.+..++|+|+ +.|+...... .......+
T Consensus 373 ~~~~~~~~lp~~~~~~~~-~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvPvIv~t~h~~~~~~~--~~~~~~~~-- 447 (694)
T PRK15179 373 PYREYLRFLPKQIIEGTT-KLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVPRIVLSVRTMPPVDR--PDRYRVEY-- 447 (694)
T ss_pred hhHHHhhhcchhHHHHHH-HHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCCEEEEEeCCCccccc--hhHHHHHH--
Confidence 1111100 0111111 1123566 899999999855432 334445588876 4464322111 11111111
Q ss_pred chhhHHHHH-hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccch-hhhcCCCCCCCCeEEEEee
Q psy12587 124 PLNKLEEWT-TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPI-ENVLNPLPGKEDIVFLSIN 201 (390)
Q Consensus 124 ~~~~~~~~~-~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~i~~~g 201 (390)
..+...+ ...++.+++.|+..++.+.+.++ .+.+++.|||||+|...+.+.+.... ...+.....++.++|+++|
T Consensus 448 --~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g-~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VG 524 (694)
T PRK15179 448 --DIIYSELLKMRGVALSSNSQFAAHRYADWLG-VDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVM 524 (694)
T ss_pred --HHHHHHHHhcCCeEEEeCcHHHHHHHHHHcC-CChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEE
Confidence 1111111 22456777788888888877654 44679999999999877754321110 1111100223567899999
Q ss_pred cccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHH
Q psy12587 202 RYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLF 281 (390)
Q Consensus 202 ~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~ 281 (390)
|+.+.||++.+++|+..+.++.++ ++|+|+|+|+.. ++++++++++++.++|.|.|+.+ ++..+|
T Consensus 525 RL~~~KG~~~LI~A~a~l~~~~p~-----~~LvIvG~G~~~--------~~L~~l~~~lgL~~~V~flG~~~--dv~~ll 589 (694)
T PRK15179 525 RVDDNKRPFLWVEAAQRFAASHPK-----VRFIMVGGGPLL--------ESVREFAQRLGMGERILFTGLSR--RVGYWL 589 (694)
T ss_pred eCCccCCHHHHHHHHHHHHHHCcC-----eEEEEEccCcch--------HHHHHHHHHcCCCCcEEEcCCcc--hHHHHH
Confidence 999999999999999999888875 999999998765 88999999999999999999976 468999
Q ss_pred HhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-C--HHHHHHHHHHHhcCChhHHHHHHH
Q psy12587 282 KFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-N--EEAFAKAMKKIVDNDGNIIQQFSQ 358 (390)
Q Consensus 282 ~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~--~~~l~~~i~~l~~~~~~~~~~~~~ 358 (390)
+.+|++++||.+|+||++++|||+||+|||+|+.+|.+|++.++.+|+++++ | ++++++++.+++.+.. ....+++
T Consensus 590 ~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~-~~~~l~~ 668 (694)
T PRK15179 590 TQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCA-ADPGIAR 668 (694)
T ss_pred HhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChh-ccHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 4 5799999999888766 6677888
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 359 FGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
++++.+.++|||+.+++++.++|+
T Consensus 669 ~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 669 KAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999889999999999999985
No 32
>PLN00142 sucrose synthase
Probab=100.00 E-value=7.5e-40 Score=306.29 Aligned_cols=373 Identities=17% Similarity=0.236 Sum_probs=257.4
Q ss_pred CCcchhhhHh--------h-HhhhhcCCcee----ecCCc---------cc--cccCC--CcceEEecccccc-cc---c
Q psy12587 2 LGATARLTIT--------A-TAWGATGPRTT----AHDHC---------FK--ETKDG--TLPVKVIGDWLPR-NI---F 51 (390)
Q Consensus 2 ~GG~~~~~~~--------l-~~L~~~G~~V~----~~~~~---------~~--~~~~~--~~~i~~~~~~~~~-~~---~ 51 (390)
+||.-.++.+ | ++|+++||+|+ +++.. .+ +...+ +..|.+++ +.+. .. +
T Consensus 302 tGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP-~g~~~~~l~~~ 380 (815)
T PLN00142 302 TGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVP-FRTEKGILRKW 380 (815)
T ss_pred CCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecC-CCCCccccccc
Confidence 5788878864 5 67778899864 55111 11 12222 34444432 2221 01 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh---cCCCEEEEcccccchhHHHhhc---ccEEEEeecCCccccchhhhh----hhhc
Q psy12587 52 GKFYALCMYLRMIVIALYVAWYS---EKPDLVFCDLVSICIPILQAKQ---FKVLFYCHYPDQLLSKQGSFL----KSIY 121 (390)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~---~~~Dvi~~~~~~~~~~~~~~~~---~~~v~~~h~~~~~~~~~~~~~----~~~~ 121 (390)
-.-..++.++..+.......+.+ .+||+||+|.+..++.+..++. +|.+.+.|............. ...+
T Consensus 381 i~ke~l~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y 460 (815)
T PLN00142 381 ISRFDVWPYLETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKY 460 (815)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcccchhhhccccCCcccccchhh
Confidence 12234455555554444433433 5699999999887776655554 999999996542211111110 1111
Q ss_pred ccch-hhHHHHHhcCcceEEEccHhHHHHHH-------HH-----------hccC--CCCceeecCCCCCCCCCCCCCcc
Q psy12587 122 RFPL-NKLEEWTTCKADKIVVNSEFTKSVVQ-------AT-----------FRSL--DHKCLDILYPSVYTEGLEKTTPE 180 (390)
Q Consensus 122 ~~~~-~~~~~~~~~~ad~ii~~s~~~~~~~~-------~~-----------~~~~--~~~~~~vi~~~~~~~~~~~~~~~ 180 (390)
+... -..+..++..||.||+.|......+. .+ ..++ ...++.++|+|+|...|.+....
T Consensus 461 ~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~ 540 (815)
T PLN00142 461 HFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEK 540 (815)
T ss_pred hhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChH
Confidence 1111 12467788999999999977664221 11 1111 13488999999999877653321
Q ss_pred c-------------------hhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCC-
Q psy12587 181 P-------------------IENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYD- 240 (390)
Q Consensus 181 ~-------------------~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~- 240 (390)
. .++.++-+...+.++|+++||+.+.||++.+++|+.++.+..+ +++|+|+|++.
T Consensus 541 ~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~-----~~~LVIVGgg~d 615 (815)
T PLN00142 541 QKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRE-----LVNLVVVGGFID 615 (815)
T ss_pred HhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCC-----CcEEEEEECCcc
Confidence 1 0122221123456689999999999999999999998876555 39999999872
Q ss_pred CC---CcchhHHHHHHHHHHHHcCCCCcEEEecCC----ChHHHHHHHHh-cceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 241 PH---NIENVEYYKELGVLVKKLKLSDNVLFLTSP----SDAAKISLFKF-CHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 241 ~~---~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~----~~~e~~~~~~~-adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
.. ..+......++.++++++++.++|.|+|.. +..++..+++. +|++++||.+|+||++++|||+||+|||+
T Consensus 616 ~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVA 695 (815)
T PLN00142 616 PSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFA 695 (815)
T ss_pred ccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEE
Confidence 11 111223345688899999999999999854 34677777774 79999999999999999999999999999
Q ss_pred ecCCCcccceecCcceeeecC-CHHHHHHHHHHH----hcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy12587 313 VNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKI----VDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 313 ~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
|+.||..|++.++.+|+++++ |+++++++|.++ ++|++ .+++|++++++.+.++|||+.++++++++.
T Consensus 696 TdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~-lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 696 TCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPS-YWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred cCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999 999999998765 46888 999999999999989999999999999875
No 33
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=9.3e-40 Score=293.92 Aligned_cols=331 Identities=21% Similarity=0.242 Sum_probs=254.1
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHH-HHHHHHhh-cCCC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVI-ALYVAWYS-EKPD 78 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~D 78 (390)
.+|.++++.++ ++|.++||+|+++................... . .... ...+..+.. ......++ .+||
T Consensus 10 ~~~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~---~--~~~~---~~~~~~~~~~~~~~~~~~~~~~D 81 (355)
T cd03799 10 PRLSETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELA---R--TRYL---ARSLALLAQALVLARELRRLGID 81 (355)
T ss_pred CCcchHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccc---c--hHHH---HHHHHHHHHHHHHHHHHHhcCCC
Confidence 35688999999 99999999999881111100000000000000 0 0000 111111111 11112344 8999
Q ss_pred EEEEcccccchhHH----HhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHh
Q psy12587 79 LVFCDLVSICIPIL----QAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATF 154 (390)
Q Consensus 79 vi~~~~~~~~~~~~----~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~ 154 (390)
+||+|.......+. +..++|+++++|+.+.+..... ..++..++.+|.++++|+..++.+.+.+
T Consensus 82 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~vi~~s~~~~~~l~~~~ 149 (355)
T cd03799 82 HIHAHFGTTPATVAMLASRLGGIPYSFTAHGKDIFRSPDA------------IDLDEKLARADFVVAISEYNRQQLIRLL 149 (355)
T ss_pred EEEECCCCchHHHHHHHHHhcCCCEEEEEecccccccCch------------HHHHHHHhhCCEEEECCHHHHHHHHHhc
Confidence 99999853322222 2234899999997544321110 4556778899999999999999999976
Q ss_pred ccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEE
Q psy12587 155 RSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLV 234 (390)
Q Consensus 155 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~ 234 (390)
+ .+..++.++|||+|.+.+..... . ...+++.++++|++.+.||++.+++++..+.+..++ ++++
T Consensus 150 ~-~~~~~~~vi~~~~d~~~~~~~~~----~-----~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~-----~~l~ 214 (355)
T cd03799 150 G-CDPDKIHVVHCGVDLERFPPRPP----P-----PPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGID-----FRLD 214 (355)
T ss_pred C-CCcccEEEEeCCcCHHHcCCccc----c-----ccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCC-----eEEE
Confidence 3 44689999999999887765420 0 223678899999999999999999999999887664 9999
Q ss_pred EEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCC------CCCCccHHhhhhcCC
Q psy12587 235 VAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN------EHFGIVPIEAMFCKR 308 (390)
Q Consensus 235 i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~------e~~~~~~~Ea~a~G~ 308 (390)
++|.++.. +.+++.++++++.++|.+.|+++.+++..+|++||++++||.. |++|++++|||++|+
T Consensus 215 i~G~~~~~--------~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~ 286 (355)
T cd03799 215 IVGDGPLR--------DELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGL 286 (355)
T ss_pred EEECCccH--------HHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCC
Confidence 99998876 8888899999988999999999999999999999999999998 999999999999999
Q ss_pred CEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHH
Q psy12587 309 PVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQ 376 (390)
Q Consensus 309 pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (390)
|||+++.++.++++.++.+|+++++ |+++++++|.+++++++ .+.++++++++.+.++|+|+..+++
T Consensus 287 Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 287 PVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPE-LRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred CEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 9999999999999999989999998 99999999999999999 8999999999999999999998875
No 34
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5e-40 Score=295.91 Aligned_cols=332 Identities=19% Similarity=0.206 Sum_probs=250.1
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCc--cccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-c
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHC--FKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-E 75 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (390)
.||+++++.++ ++|.+.||+|+++ ... .......+..+................. .... ...+ .
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~ 82 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPS---FFKQ-------LKKLAK 82 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecccccccccccHH---HHHH-------HHhcCC
Confidence 59999999999 9999999999988 111 1111122223333322111111111000 0000 0133 8
Q ss_pred CCCEEEEcccccchhH-HHh--hcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 76 KPDLVFCDLVSICIPI-LQA--KQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 76 ~~Dvi~~~~~~~~~~~-~~~--~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
+||+||+|.+...... ... .++|.++++|+.... ..........+++++++.+|.++++|+...+.+..
T Consensus 83 ~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--------~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~ 154 (357)
T cd03795 83 KADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVK--------QKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPV 154 (357)
T ss_pred CCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhc--------cchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHH
Confidence 9999999985432222 111 248899999963211 11222334566778899999999999999998877
Q ss_pred HhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceE
Q psy12587 153 TFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVK 232 (390)
Q Consensus 153 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~ 232 (390)
.+. . ..++.++|||++...+.+.......... ...+.+.++++|++.+.||++.++++++++. + ++
T Consensus 155 ~~~-~-~~~~~~i~~gi~~~~~~~~~~~~~~~~~---~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~-----~~ 220 (357)
T cd03795 155 LRR-F-RDKVRVIPLGLDPARYPRPDALEEAIWR---RAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----D-----AP 220 (357)
T ss_pred hcC-C-ccceEEecCCCChhhcCCcchhhhHhhc---CCCCCcEEEEecccccccCHHHHHHHHHhcc----C-----cE
Confidence 643 2 3789999999998877654321111111 2346788999999999999999999999987 2 89
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCC--CCCCCccHHhhhhcCCCE
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS--NEHFGIVPIEAMFCKRPV 310 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~--~e~~~~~~~Ea~a~G~pv 310 (390)
++++|+++.. ..+++.+++++..++|.++|+++++++..+|+.||++++||. .|++|++++|||++|+||
T Consensus 221 l~i~G~g~~~--------~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pv 292 (357)
T cd03795 221 LVIVGEGPLE--------AELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPV 292 (357)
T ss_pred EEEEeCChhH--------HHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCE
Confidence 9999998764 778888888888899999999999999999999999999986 599999999999999999
Q ss_pred EEecCCCcccceec-CcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHH
Q psy12587 311 IAVNSGGPKESVVD-GRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFS 374 (390)
Q Consensus 311 i~~~~~~~~e~i~~-~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
|+++.++..+.+.+ +.+|+++++ |+++++++|.+++++++ .+++|++++++.+.++|||+.++
T Consensus 293 i~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 293 ISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPE-LRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred EecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHhcchHhhC
Confidence 99999999998886 889999988 99999999999999999 99999999999999999999763
No 35
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=5.3e-40 Score=294.07 Aligned_cols=288 Identities=16% Similarity=0.157 Sum_probs=221.7
Q ss_pred HHhh-cCCCEEEEccccc---chhHHHhhcccEEEE-eecCCccccchhhhhhhhcccchhhHHH--HHhcCcceEEEcc
Q psy12587 71 AWYS-EKPDLVFCDLVSI---CIPILQAKQFKVLFY-CHYPDQLLSKQGSFLKSIYRFPLNKLEE--WTTCKADKIVVNS 143 (390)
Q Consensus 71 ~~~~-~~~Dvi~~~~~~~---~~~~~~~~~~~~v~~-~h~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ad~ii~~s 143 (390)
.+++ .+||+||+|...+ +.+++++.++|++++ .|+.... ........-+ ..+.+ .+...+| +++.|
T Consensus 274 ~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~~~~~--~~~r~~~~e~----~~~~~a~~i~~~sd-~v~~s 346 (578)
T PRK15490 274 PHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQLGLRGLPPV--VRKRLFKPEY----EPLYQALAVVPGVD-FMSNN 346 (578)
T ss_pred HHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecccCCc--chhhHHHHHH----HHhhhhceeEecch-hhhcc
Confidence 4677 9999999998654 334556667888665 5541110 0011000000 00111 2244455 77888
Q ss_pred HhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCcc--chhhhcC-CCCCCCCeEEEEeecccccCCHHHHHHHHHHHH
Q psy12587 144 EFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPE--PIENVLN-PLPGKEDIVFLSINRYERKKNLELAIYSLNSLR 220 (390)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~-~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~ 220 (390)
...++.+.+.++ .+++++.+||||+|...|.+.... ..+..+. .++ .+.++++++||+...||...+++++..+.
T Consensus 347 ~~v~~~l~~~lg-ip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~-~~~~vIg~VgRl~~~Kg~~~LI~A~a~ll 424 (578)
T PRK15490 347 HCVTRHYADWLK-LEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQ-DADTTIGGVFRFVGDKNPFAWIDFAARYL 424 (578)
T ss_pred HHHHHHHHHHhC-CCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccC-CCCcEEEEEEEEehhcCHHHHHHHHHHHH
Confidence 888888888764 558899999999999877664321 1122111 022 35578899999999999999999999988
Q ss_pred hhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccH
Q psy12587 221 SRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVP 300 (390)
Q Consensus 221 ~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~ 300 (390)
+..|+ ++|+|+|+|+.. ++++++++++++.++|.|+|+.+ ++..+|+.+|++++||.+|+||+++
T Consensus 425 k~~pd-----irLvIVGdG~~~--------eeLk~la~elgL~d~V~FlG~~~--Dv~~~LaaADVfVlPS~~EGfp~vl 489 (578)
T PRK15490 425 QHHPA-----TRFVLVGDGDLR--------AEAQKRAEQLGILERILFVGASR--DVGYWLQKMNVFILFSRYEGLPNVL 489 (578)
T ss_pred hHCCC-----eEEEEEeCchhH--------HHHHHHHHHcCCCCcEEECCChh--hHHHHHHhCCEEEEcccccCccHHH
Confidence 87775 999999999765 88999999999999999999854 5689999999999999999999999
Q ss_pred HhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHH---HHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHH
Q psy12587 301 IEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAM---KKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQ 376 (390)
Q Consensus 301 ~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (390)
+|||+||+|||+|+.+|.+|++.++.+|+++++ |++++++++ ..+.++.. .+..+++++++.+.++|||+.++++
T Consensus 490 LEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~-~~~~mg~~ARe~V~e~FS~e~Mv~~ 568 (578)
T PRK15490 490 IEAQMVGVPVISTPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWR-SRTGICQQTQSFLQERFTVEHMVGT 568 (578)
T ss_pred HHHHHhCCCEEEeCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 999999999999999999999999999999998 888888876 44555555 5667889999999999999999999
Q ss_pred HHHHHHh
Q psy12587 377 LNTIVNN 383 (390)
Q Consensus 377 ~~~~~~~ 383 (390)
|.++|.+
T Consensus 569 y~ki~~~ 575 (578)
T PRK15490 569 FVKTIAS 575 (578)
T ss_pred HHHHHHh
Confidence 9999975
No 36
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=2.7e-39 Score=292.59 Aligned_cols=353 Identities=19% Similarity=0.165 Sum_probs=252.0
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecC--CccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHD--HCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKP 77 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (390)
.||+++++.++ ++|.+.||+|+++. ...................... ............ .......... .+|
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~ 88 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINV---AYGLNLARYLFP-PSLLAWLRLNIREA 88 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccch---hhhhhhhhhccC-hhHHHHHHHhCCCC
Confidence 59999999999 99999999999881 1111111100000000000000 000000000000 0000111223 799
Q ss_pred CEEEEccccc--chhHHHh---hcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 78 DLVFCDLVSI--CIPILQA---KQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 78 Dvi~~~~~~~--~~~~~~~---~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
|+||+++... ....... .++|++++.|+.............+... ....++..++.++.+++.|+........
T Consensus 89 dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~s~~~~~~~~~ 166 (375)
T cd03821 89 DIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHKALKKRLA--WFLFERRLLQAAAAVHATSEQEAAEIRR 166 (375)
T ss_pred CEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccccccchhhhHHH--HHHHHHHHHhcCCEEEECCHHHHHHHHh
Confidence 9999998422 2222222 3499999999753322111111111111 1234567788999999999887777666
Q ss_pred HhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceE
Q psy12587 153 TFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVK 232 (390)
Q Consensus 153 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~ 232 (390)
... ..++.++|||+|.+.+........+...+ ..++.++++++|++.+.||++.+++++..+.+++++ ++
T Consensus 167 ~~~---~~~~~vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~-----~~ 236 (375)
T cd03821 167 LGL---KAPIAVIPNGVDIPPFAALPSRGRRRKFP--ILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPD-----WH 236 (375)
T ss_pred hCC---cccEEEcCCCcChhccCcchhhhhhhhcc--CCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCC-----eE
Confidence 433 67899999999988776543222122222 334778999999999999999999999999988775 99
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
|+++|.++.. +...++..++++++.++|.++|+++++++.++|+.||++++||..|++|++++|||+||+|||+
T Consensus 237 l~i~G~~~~~------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~ 310 (375)
T cd03821 237 LVIAGPDEGG------YRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVT 310 (375)
T ss_pred EEEECCCCcc------hHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEE
Confidence 9999987652 3355666668889999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 313 VNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 313 ~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
++.++..+++.+ .+|++++.+.++++++|.+++++++ .++.+++++++.+.++|+|+.+++++.
T Consensus 311 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 311 TDKVPWQELIEY-GCGWVVDDDVDALAAALRRALELPQ-RLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred cCCCCHHHHhhc-CceEEeCCChHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 999999999988 7888887777999999999999998 999999999999889999999999875
No 37
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.8e-39 Score=292.48 Aligned_cols=336 Identities=12% Similarity=0.082 Sum_probs=221.3
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec---CCcccc-ccCCCcc-eEEeccccccccchhhHHHH------HHHHHHHHHHH
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH---DHCFKE-TKDGTLP-VKVIGDWLPRNIFGKFYALC------MYLRMIVIALY 69 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~---~~~~~~-~~~~~~~-i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 69 (390)
.||+|+.+.+| +.|.++||+|.+. +..... .....+. +..... .+.....+. ...........
T Consensus 12 ~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
T PRK10125 12 EGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTP-----RMTAMANIALFRLFNRDLFGNFNELY 86 (405)
T ss_pred CCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecc-----cHHHHHHHHHHHhcchhhcchHHHHH
Confidence 59999999999 9999999998776 111111 1111111 111100 000000000 00000011111
Q ss_pred HHHhh-cCCCEEEEccccc---chh-HHH------hh--cccEEEEeecCCccccch------hhh------------h-
Q psy12587 70 VAWYS-EKPDLVFCDLVSI---CIP-ILQ------AK--QFKVLFYCHYPDQLLSKQ------GSF------------L- 117 (390)
Q Consensus 70 ~~~~~-~~~Dvi~~~~~~~---~~~-~~~------~~--~~~~v~~~h~~~~~~~~~------~~~------------~- 117 (390)
..+.+ .+|||||.|+... .+. +.. +. ++|+|+|.|+.+...... ..+ .
T Consensus 87 ~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~ 166 (405)
T PRK10125 87 RTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYP 166 (405)
T ss_pred HHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCC
Confidence 11224 8999999998654 222 111 22 289999999877542100 000 0
Q ss_pred hhhcc---c---chhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCC
Q psy12587 118 KSIYR---F---PLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPG 191 (390)
Q Consensus 118 ~~~~~---~---~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~ 191 (390)
..... + ..+...+.+.+.++.++++|++.++.+.+.++ ..++.+||||+|.+.+...+...... ..
T Consensus 167 ~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~---~~~i~vI~NGid~~~~~~~~~~~~~~-----~~ 238 (405)
T PRK10125 167 PVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYG---PGRCRIINNGIDMATEAILAELPPVR-----ET 238 (405)
T ss_pred CCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcC---CCCEEEeCCCcCcccccccccccccc-----cC
Confidence 00000 0 11122233455678999999999999887655 57899999999964322211100000 11
Q ss_pred CCCeEEEEeecc--cccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe
Q psy12587 192 KEDIVFLSINRY--ERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL 269 (390)
Q Consensus 192 ~~~~~i~~~g~~--~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~ 269 (390)
.++++++++|+. .+.||++.+++|+..+.. +++|+++|.++.. . .+++.++
T Consensus 239 ~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~~--------~~~L~ivG~g~~~--------~-----------~~~v~~~ 291 (405)
T PRK10125 239 QGKPKIAVVAHDLRYDGKTDQQLVREMMALGD--------KIELHTFGKFSPF--------T-----------AGNVVNH 291 (405)
T ss_pred CCCCEEEEEEeccccCCccHHHHHHHHHhCCC--------CeEEEEEcCCCcc--------c-----------ccceEEe
Confidence 255678999984 368999999999998742 3899999987532 1 2468889
Q ss_pred cCC-ChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 270 TSP-SDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 270 g~~-~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
|+. +..++.++|+.||++++||..|+||++++||||||+|||+|+.||.+|++.++ +|+++++ |+++|++.+.
T Consensus 292 g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~La~~~~---- 366 (405)
T PRK10125 292 GFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQLAQLSK---- 366 (405)
T ss_pred cCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHHHhccC----
Confidence 986 45788999999999999999999999999999999999999999999999875 8999999 9999998542
Q ss_pred CChhHHHH----HHHHHHHHHhhhcCHHHHHHHHHHHHHhh
Q psy12587 348 NDGNIIQQ----FSQFGFNRFNEKFSFQAFSIQLNTIVNNM 384 (390)
Q Consensus 348 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
+. ..++ +..++++.+.++||++.+++++.++|+++
T Consensus 367 -~~-~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 367 -PE-IAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred -HH-HHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 22 3322 23567888888999999999999999864
No 38
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=1e-39 Score=292.67 Aligned_cols=329 Identities=16% Similarity=0.217 Sum_probs=234.0
Q ss_pred CCcchhhhHhh-Hhhhhc--CCceeec--CCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-c
Q psy12587 2 LGATARLTITA-TAWGAT--GPRTTAH--DHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-E 75 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~--G~~V~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (390)
.||+|+++.++ ++|.++ ||+|+++ +............+... .+.......... ... ..+. .+++ .
T Consensus 13 ~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~----~~l~-~~l~~~ 83 (359)
T PRK09922 13 FGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQS---FSNIKLSFLRRA-KHV----YNFS-KWLKET 83 (359)
T ss_pred CCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcc---cccchhhhhccc-HHH----HHHH-HHHHhc
Confidence 59999999999 999999 7888776 21111100000110000 000000000000 001 1111 3455 8
Q ss_pred CCCEEEEcccccchhHH---Hhhc--ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 76 KPDLVFCDLVSICIPIL---QAKQ--FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 76 ~~Dvi~~~~~~~~~~~~---~~~~--~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
+||+||+|+........ +..+ .+++.+.|.... .. ... . ...+..+|.++++|+..++.+
T Consensus 84 ~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-----~~----~~~----~--~~~~~~~d~~i~~S~~~~~~~ 148 (359)
T PRK09922 84 QPDIVICIDVISCLYANKARKKSGKQFKIFSWPHFSLD-----HK----KHA----E--CKKITCADYHLAISSGIKEQM 148 (359)
T ss_pred CCCEEEEcCHHHHHHHHHHHHHhCCCCeEEEEecCccc-----cc----chh----h--hhhhhcCCEEEEcCHHHHHHH
Confidence 99999999854333222 2223 345555563211 00 000 0 111368999999999999999
Q ss_pred HHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccc--ccCCHHHHHHHHHHHHhhcccccc
Q psy12587 151 QATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYE--RKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 151 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
.+. +.+.+++.++|||+|.+.+..... ...++++++++||+. ..||++.+++++..+..
T Consensus 149 ~~~--~~~~~ki~vi~N~id~~~~~~~~~----------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~------- 209 (359)
T PRK09922 149 MAR--GISAQRISVIYNPVEIKTIIIPPP----------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTTG------- 209 (359)
T ss_pred HHc--CCCHHHEEEEcCCCCHHHccCCCc----------ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhCC-------
Confidence 874 344678999999998654332111 113567899999986 46999999999998754
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCCh--HHHHHHHHhcceEEeCCCCCCCCccHHhhhhc
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSD--AAKISLFKFCHCIIYTPSNEHFGIVPIEAMFC 306 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~--~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~ 306 (390)
+++|+++|+|+.. +++++.+++++++++|.|+|++++ +++.++|+.+|++++||.+||||++++|||||
T Consensus 210 -~~~l~ivG~g~~~--------~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~ 280 (359)
T PRK09922 210 -EWQLHIIGDGSDF--------EKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSY 280 (359)
T ss_pred -CeEEEEEeCCccH--------HHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHc
Confidence 3999999999875 889999999999999999999865 78899999999999999999999999999999
Q ss_pred CCCEEEec-CCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhh
Q psy12587 307 KRPVIAVN-SGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNM 384 (390)
Q Consensus 307 G~pvi~~~-~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
|+|||+++ .++..|++.++.+|+++++ |+++++++|.+++++++ .+. .++......+|+.+.+.+++.++|..+
T Consensus 281 G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
T PRK09922 281 GIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEV-KYQ---HDAIPNSIERFYEVLYFKNLNNALFSK 356 (359)
T ss_pred CCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcc-cCC---HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999 8999999999999999998 99999999999999997 542 223333347888899999999999887
Q ss_pred hh
Q psy12587 385 LD 386 (390)
Q Consensus 385 ~~ 386 (390)
++
T Consensus 357 ~~ 358 (359)
T PRK09922 357 LQ 358 (359)
T ss_pred hc
Confidence 65
No 39
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=4e-39 Score=290.77 Aligned_cols=354 Identities=22% Similarity=0.276 Sum_probs=265.9
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCcc--ccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCF--KETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKP 77 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (390)
.||.+.++..+ ++|.+.||+|+++.... ............... ........ .............+++ .+|
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 86 (374)
T cd03801 13 VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRP-PPLLRVRR-----LLLLLLLALRLRRLLRRERF 86 (374)
T ss_pred cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecC-Ccccccch-----hHHHHHHHHHHHHHhhhcCC
Confidence 38999999999 99999999998881111 111000000000000 00000000 0011111111123444 899
Q ss_pred CEEEEcccccchhH---HHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHh
Q psy12587 78 DLVFCDLVSICIPI---LQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATF 154 (390)
Q Consensus 78 Dvi~~~~~~~~~~~---~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~ 154 (390)
|+||++.+...... .+..++|+++++|+......... ...........++..++.+|.+++.|+..++.+.+.+
T Consensus 87 Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~ 163 (374)
T cd03801 87 DVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNE---LGLLLKLARALERRALRRADRIIAVSEATREELRELG 163 (374)
T ss_pred cEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccc---hhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcC
Confidence 99999996554442 33344999999998654322211 1222333456677889999999999999999999876
Q ss_pred ccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEE
Q psy12587 155 RSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLV 234 (390)
Q Consensus 155 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~ 234 (390)
+.. ..++.++|||++...+.+.. ...+.... ...+.+.++++|++...||++.+++++..+.+..++ ++|+
T Consensus 164 ~~~-~~~~~~i~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~-----~~l~ 234 (374)
T cd03801 164 GVP-PEKITVIPNGVDTERFRPAP-RAARRRLG--IPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPD-----VRLV 234 (374)
T ss_pred CCC-CCcEEEecCcccccccCccc-hHHHhhcC--CcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCC-----eEEE
Confidence 522 36899999999988775432 11111111 334678999999999999999999999999887764 9999
Q ss_pred EEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 235 VAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 235 i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
++|.++.. ..+++.+++++..++|.+.|+++++++.++|+.||++++|+..|++|++++|||++|+|||+++
T Consensus 235 i~G~~~~~--------~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~ 306 (374)
T cd03801 235 IVGDGPLR--------EELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASD 306 (374)
T ss_pred EEeCcHHH--------HHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeC
Confidence 99976543 7788888888888999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 315 SGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 315 ~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
.++..+++.++.+|+++++ |+++++++|.+++++++ .++++++++++.+.+.|+|+.+++++.++|+
T Consensus 307 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 307 VGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPE-LRRRLGEAARERVAERFSWDRVAARTEEVYY 374 (374)
T ss_pred CCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhC
Confidence 9999999998899999998 89999999999999999 9999999999888899999999999998873
No 40
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=4.1e-39 Score=291.43 Aligned_cols=351 Identities=19% Similarity=0.256 Sum_probs=255.1
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCcccc--ccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKE--TKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKP 77 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (390)
.||+++.+..+ ++|.++||+|+++...... .......+..... ................ .....++ .+|
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 85 (374)
T cd03817 13 VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRV--PTFKYPDFRLPLPIPR-----ALIIILKELGP 85 (374)
T ss_pred CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccccccccccccc--ccchhhhhhccccHHH-----HHHHHHhhcCC
Confidence 58999999999 9999999999988211111 1111111111100 0000011100111111 1112344 899
Q ss_pred CEEEEcccccch-hH---HHhhcccEEEEeecCCccccchhhhhhhhcccchh-hHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 78 DLVFCDLVSICI-PI---LQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLN-KLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 78 Dvi~~~~~~~~~-~~---~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
|+||++.+.... .. .+..++|++++.|+..................... .+++..++.+|.++++|+..++.+.+
T Consensus 86 Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~ 165 (374)
T cd03817 86 DIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIADLLRE 165 (374)
T ss_pred CEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHHHHHHHh
Confidence 999999853322 22 22334899999997543221111111112222222 57788899999999999999988877
Q ss_pred HhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceE
Q psy12587 153 TFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVK 232 (390)
Q Consensus 153 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~ 232 (390)
.. . ..++.++|||+|...+.+......++.++ ..+++++++++|++.+.||++.++++++.+.++.++ ++
T Consensus 166 ~~--~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~-----~~ 235 (374)
T cd03817 166 YG--V-KRPIEVIPTGIDLDRFEPVDGDDERRKLG--IPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPD-----VK 235 (374)
T ss_pred cC--C-CCceEEcCCccchhccCccchhHHHHhcC--CCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCC-----eE
Confidence 52 2 45699999999988776654332222222 234678899999999999999999999999887664 99
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
++++|+++.. +.+++.++++++.++|.++|+++++++..+|+.||++++|+..|++|++++|||+||+|||+
T Consensus 236 l~i~G~~~~~--------~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~ 307 (374)
T cd03817 236 LVIVGDGPER--------EELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVA 307 (374)
T ss_pred EEEEeCCchH--------HHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEE
Confidence 9999988754 78888888889889999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 313 VNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 313 ~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
++.++..+++.++.+|+++++ +. +++++|.+++++++ .++++++++++.+. +++ ..+++.++|++
T Consensus 308 ~~~~~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~-~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~ 373 (374)
T cd03817 308 VDAPGLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPE-LRRRLSKNAEESAE-KFS---FAKKVEKLYEE 373 (374)
T ss_pred eCCCChhhheecCceeEEeCCCCH-HHHHHHHHHHhChH-HHHHHHHHHHHHHH-HHH---HHHHHHHHHhc
Confidence 999999999999999999988 55 99999999999999 88999999999984 444 55666666654
No 41
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=1.6e-39 Score=293.43 Aligned_cols=345 Identities=19% Similarity=0.164 Sum_probs=253.7
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--C-CccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--D-HCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EK 76 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (390)
.||+++++.++ ++|.+.||+|+++ . ....................... ... ......... . ...+ .+
T Consensus 14 ~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~-~-~~~~~~~ 85 (365)
T cd03809 14 PTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRL---LWG---LLFLLRAGD-R-LLLLLLG 85 (365)
T ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhcccccccccccc---ccc---hhhHHHHHH-H-HHhhhcC
Confidence 59999999999 9999999998877 1 11111111000010000000000 000 011111000 1 1223 89
Q ss_pred CCEEEEcccccchhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhcc
Q psy12587 77 PDLVFCDLVSICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRS 156 (390)
Q Consensus 77 ~Dvi~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~ 156 (390)
||+||+++...... +..++|+++++|+........ ............+++.+++.+|.++++|+..++.+.+.++.
T Consensus 86 ~Dii~~~~~~~~~~--~~~~~~~i~~~hd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~ 161 (365)
T cd03809 86 LDLLHSPHNTAPLL--RLRGVPVVVTIHDLIPLRFPE--YFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGV 161 (365)
T ss_pred CCeeeecccccCcc--cCCCCCEEEEeccchhhhCcc--cCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHHHHHhCc
Confidence 99999999655444 455699999999754322211 11111223345677888999999999999999999998753
Q ss_pred CCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEE
Q psy12587 157 LDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVA 236 (390)
Q Consensus 157 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~ 236 (390)
+..++.++|||++...+....... +.... ...+++.++++|++.+.||++.+++++..+.+..++ ++|+++
T Consensus 162 -~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~-----~~l~i~ 232 (365)
T cd03809 162 -PPDKIVVIPLGVDPRFRPPPAEAE-VLRAL--YLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPD-----PKLVIV 232 (365)
T ss_pred -CHHHEEeeccccCccccCCCchHH-HHHHh--cCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCC-----CCEEEe
Confidence 357899999999988776543221 11111 234678899999999999999999999999988764 899999
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC
Q psy12587 237 GGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 237 G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~ 316 (390)
|.+.... ....+.+++.+..++|.++|+++++++.++|+.||++++||..|++|++++|||++|+|||+++.+
T Consensus 233 G~~~~~~-------~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~ 305 (365)
T cd03809 233 GKRGWLN-------EELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNIS 305 (365)
T ss_pred cCCcccc-------HHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCC
Confidence 9876531 333444467788899999999999999999999999999999999999999999999999999999
Q ss_pred CcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 317 GPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 317 ~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
+..|++. .+|+++++ |.++++++|.+++++++ .+..+++++++.+ ++|+|+.+++++.
T Consensus 306 ~~~e~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~-~~~sw~~~~~~~~ 364 (365)
T cd03809 306 SLPEVAG--DAALYFDPLDPEALAAAIERLLEDPA-LREELRERGLARA-KRFSWEKTARRTL 364 (365)
T ss_pred Cccceec--CceeeeCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHH-HhCCHHHHHHHHh
Confidence 9999884 46888888 99999999999999999 9999999999765 8999999999876
No 42
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=8.3e-39 Score=288.37 Aligned_cols=340 Identities=21% Similarity=0.241 Sum_probs=259.3
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--C--Cc-cccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--D--HC-FKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS- 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~--~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 74 (390)
.||+++++..| ++|.+.||+|.++ . .. .......++.+..+..... ...+...... ..+++
T Consensus 11 ~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~---~~~~~~~~~~---------~~~~~~ 78 (365)
T cd03807 11 VGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPG---RPDPGALLRL---------YKLIRR 78 (365)
T ss_pred CccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccc---cccHHHHHHH---------HHHHHh
Confidence 49999999999 9999999998777 1 11 1122234556655532211 0111111111 12344
Q ss_pred cCCCEEEEcccccchh---HHHh-hcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 EKPDLVFCDLVSICIP---ILQA-KQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~---~~~~-~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
.+||+||++....... .... .++|++++.|+...... ........++.+.+.+.+|.++++|+...+.+
T Consensus 79 ~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~ 151 (365)
T cd03807 79 LRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLG-------KKSTRLVARLRRLLSSFIPLIVANSAAAAEYH 151 (365)
T ss_pred hCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCccccc-------chhHhHHHHHHHHhccccCeEEeccHHHHHHH
Confidence 8999999987543332 2223 34899999997654321 11222334566777888999999999999998
Q ss_pred HHHhccCCCCceeecCCCCCCCCCCCCCc--cchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccc
Q psy12587 151 QATFRSLDHKCLDILYPSVYTEGLEKTTP--EPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 151 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
.+. +.+..++.++|||+|...+.+... ...+++++ ++ ++.+.++++|++.+.||++.+++++..+.++.++
T Consensus 152 ~~~--~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~--- 224 (365)
T cd03807 152 QAI--GYPPKKIVVIPNGVDTERFSPDLDARARLREELG-LP-EDTFLIGIVARLHPQKDHATLLRAAALLLKKFPN--- 224 (365)
T ss_pred HHc--CCChhheeEeCCCcCHHhcCCcccchHHHHHhcC-CC-CCCeEEEEecccchhcCHHHHHHHHHHHHHhCCC---
Confidence 875 344678999999999877655432 11223333 22 4678899999999999999999999999887775
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHH-HcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcC
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVK-KLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCK 307 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~-~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G 307 (390)
++|+++|.++.. ...+.... +.++.++|.+.|..+ ++..+|+.||++++||..|++|++++|||+||
T Consensus 225 --~~l~i~G~~~~~--------~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g 292 (365)
T cd03807 225 --ARLLLVGDGPDR--------ANLELLALKELGLEDKVILLGERS--DVPALLNALDVFVLSSLSEGFPNVLLEAMACG 292 (365)
T ss_pred --eEEEEecCCcch--------hHHHHHHHHhcCCCceEEEccccc--cHHHHHHhCCEEEeCCccccCCcHHHHHHhcC
Confidence 999999998765 55566665 788889999999654 56899999999999999999999999999999
Q ss_pred CCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 308 RPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 308 ~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+|||+++.++..+++.+ +|++++. |+++++++|.+++++++ .+.++++++++.+.++|+|+..++++.++|+
T Consensus 293 ~PvI~~~~~~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 293 LPVVATDVGDNAELVGD--TGFLVPPGDPEALAEAIEALLADPA-LRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred CCEEEcCCCChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999999977 8899988 99999999999999998 9999999999999999999999999999874
No 43
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=3e-38 Score=285.69 Aligned_cols=350 Identities=21% Similarity=0.238 Sum_probs=262.9
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCcccccc-CCCcce---E---EeccccccccchhhHHHHHHHHHHHHHHHHHHh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKETK-DGTLPV---K---VIGDWLPRNIFGKFYALCMYLRMIVIALYVAWY 73 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~~-~~~~~i---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (390)
.||+++++..+ ++|.+.||+|+++........ ...... . ................. ..........+.
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~ 88 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLY----LLAARALLKLLK 88 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhH----HHHHHHHHHHHh
Confidence 49999999999 999999999998821111110 000000 0 00000000000111111 111112222233
Q ss_pred --hcCCCEEEEcccccch-hHHHhh---cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHH
Q psy12587 74 --SEKPDLVFCDLVSICI-PILQAK---QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTK 147 (390)
Q Consensus 74 --~~~~Dvi~~~~~~~~~-~~~~~~---~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 147 (390)
..+||+|+++...... ...... ++|+++++|+.......... .....++..++.+|.++++|+..+
T Consensus 89 ~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~--------~~~~~~~~~~~~~d~ii~~s~~~~ 160 (377)
T cd03798 89 LKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKR--------LLRALLRRALRRADAVIAVSEALA 160 (377)
T ss_pred cccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchh--------hHHHHHHHHHhcCCeEEeCCHHHH
Confidence 3899999999743322 222222 26999999986543222111 345666788999999999999999
Q ss_pred HHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccccc
Q psy12587 148 SVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEM 227 (390)
Q Consensus 148 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~ 227 (390)
+.+.+.+ .+..++.++|||+|...+.+...... .... ..++.+.++++|++.+.||++.++++++.+.+++++
T Consensus 161 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~-- 233 (377)
T cd03798 161 DELKALG--IDPEKVTVIPNGVDTERFSPADRAEA-RKLG--LPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPD-- 233 (377)
T ss_pred HHHHHhc--CCCCceEEcCCCcCcccCCCcchHHH-Hhcc--CCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCC--
Confidence 9998864 33689999999999887765433211 1111 334778999999999999999999999999887664
Q ss_pred ccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcC
Q psy12587 228 KTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCK 307 (390)
Q Consensus 228 ~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G 307 (390)
++++++|.++.. +.+++.+++.++.++|.+.|+++++++.++|+.||++++|+..|++|++++|||++|
T Consensus 234 ---~~l~i~g~~~~~--------~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G 302 (377)
T cd03798 234 ---VHLVIVGDGPLR--------EALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACG 302 (377)
T ss_pred ---eEEEEEcCCcch--------HHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcC
Confidence 999999998765 778888888888899999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhh
Q psy12587 308 RPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNM 384 (390)
Q Consensus 308 ~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
+|||+++.++..+++.++.+|+++++ |+++++++|.++++++. . ++..++++.+.++|+|+..++++.++++++
T Consensus 303 ~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~-~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 303 LPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLADPW-L--RLGRAARRRVAERFSWENVAERLLELYREV 377 (377)
T ss_pred CCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcH-H--HHhHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998 99999999999999988 5 778888888889999999999999998763
No 44
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=2.4e-38 Score=285.35 Aligned_cols=338 Identities=20% Similarity=0.237 Sum_probs=248.2
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec---CCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH---DHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EK 76 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (390)
.||+++++.++ ++|.++||+|+++ +...............+. ........ +.... . ...+++ .+
T Consensus 11 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~-~-~~~~~~~~~ 79 (360)
T cd04951 11 LGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPIDATIILNLN--MSKNPLSF-------LLALW-K-LRKILRQFK 79 (360)
T ss_pred CCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchhhccceEEec--ccccchhh-------HHHHH-H-HHHHHHhcC
Confidence 59999999999 9999999999987 222111111111111111 11111111 11111 1 112445 89
Q ss_pred CCEEEEcccccchhHH---Hhh-cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 77 PDLVFCDLVSICIPIL---QAK-QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 77 ~Dvi~~~~~~~~~~~~---~~~-~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
||+||+|.....+... ... ++|++++.|+.... . ....+..+.....++.++++|+...+.+.+
T Consensus 80 pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 147 (360)
T cd04951 80 PDVVHAHMFHANIFARLLRLFLPSPPLICTAHSKNEG-----G-------RLRMLAYRLTDFLSDLTTNVSKEALDYFIA 147 (360)
T ss_pred CCEEEEcccchHHHHHHHHhhCCCCcEEEEeeccCch-----h-------HHHHHHHHHHhhccCceEEEcHHHHHHHHh
Confidence 9999999865433221 122 27899999975321 0 011233345556688889999999998887
Q ss_pred HhccCCCCceeecCCCCCCCCCCCCCc--cchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccc
Q psy12587 153 TFRSLDHKCLDILYPSVYTEGLEKTTP--EPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTH 230 (390)
Q Consensus 153 ~~~~~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~ 230 (390)
.. ..+.+++.++|||+|...+.+... ...++.++ ..+++++++++|++.+.||++.+++++..+.++.++
T Consensus 148 ~~-~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~----- 219 (360)
T cd04951 148 SK-AFNANKSFVVYNGIDTDRFRKDPARRLKIRNALG--VKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLD----- 219 (360)
T ss_pred cc-CCCcccEEEEccccchhhcCcchHHHHHHHHHcC--cCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCC-----
Confidence 63 234679999999999877654322 22333332 234678899999999999999999999999887775
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCE
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPV 310 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pv 310 (390)
++|+|+|+++.. +++++.++++++.++|.++|+++ ++..+|+.||++++||..|++|++++|||++|+||
T Consensus 220 ~~l~i~G~g~~~--------~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~Pv 289 (360)
T cd04951 220 IKLLIAGDGPLR--------ATLERLIKALGLSNRVKLLGLRD--DIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPV 289 (360)
T ss_pred eEEEEEcCCCcH--------HHHHHHHHhcCCCCcEEEecccc--cHHHHHHhhceEEecccccCCChHHHHHHHcCCCE
Confidence 999999998765 78888899999888999999864 56899999999999999999999999999999999
Q ss_pred EEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 311 IAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 311 i~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
|+++.++..|++.+ +|..+++ |+++++++|.++++++.+.+..++.+ ++.+.++|+|+.+++++.++|++
T Consensus 290 I~~~~~~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~~ 360 (360)
T cd04951 290 VATDAGGVREVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWLTLYTG 360 (360)
T ss_pred EEecCCChhhEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhhC
Confidence 99999999999976 7888888 99999999999996555255566555 77788999999999999999863
No 45
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=2.6e-38 Score=285.57 Aligned_cols=336 Identities=20% Similarity=0.180 Sum_probs=241.8
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCccccccCCCc--ceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-c
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHCFKETKDGTL--PVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-E 75 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (390)
.||+++++.+| ++|.+.||+|+++ ............ ..... ... ........ ...++ .
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~---------~~~~~~~ 75 (366)
T cd03822 12 KCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVI----VLD---NPLDYRRA---------ARAIRLS 75 (366)
T ss_pred CCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeee----ecC---CchhHHHH---------HHHHhhc
Confidence 59999999999 9999999998887 111111111000 00110 000 00000011 12344 8
Q ss_pred CCCEEEEccccc------chhHHHh---hcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhH
Q psy12587 76 KPDLVFCDLVSI------CIPILQA---KQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFT 146 (390)
Q Consensus 76 ~~Dvi~~~~~~~------~~~~~~~---~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 146 (390)
+||+||++.+.. ....... .++|+|+++|+..... ......++.+.+++.+|.++++|...
T Consensus 76 ~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~----------~~~~~~~~~~~~~~~~d~ii~~s~~~ 145 (366)
T cd03822 76 GPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHE----------PRPGDRALLRLLLRRADAVIVMSSEL 145 (366)
T ss_pred CCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccc----------cchhhhHHHHHHHhcCCEEEEeeHHH
Confidence 999999977321 1111221 3499999999851110 01122355677789999999997333
Q ss_pred HHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccc
Q psy12587 147 KSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDE 226 (390)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~ 226 (390)
...+... ....++.++|||++...+...... .... ...+.++++++|++.+.||++.+++++..+.+++++
T Consensus 146 ~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~--~~~~---~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~- 216 (366)
T cd03822 146 LRALLLR---AYPEKIAVIPHGVPDPPAEPPESL--KALG---GLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPD- 216 (366)
T ss_pred HHHHHhh---cCCCcEEEeCCCCcCcccCCchhh--Hhhc---CCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCC-
Confidence 3222221 114799999999987766543221 1111 234678999999999999999999999999988775
Q ss_pred cccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-CChHHHHHHHHhcceEEeCCCCC--CCCccHHhh
Q psy12587 227 MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-PSDAAKISLFKFCHCIIYTPSNE--HFGIVPIEA 303 (390)
Q Consensus 227 ~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~-~~~~e~~~~~~~adv~v~ps~~e--~~~~~~~Ea 303 (390)
++|+++|++...... ......++++++++.++|.++|. ++.+++..+|+.||++++||..| ++|++++||
T Consensus 217 ----~~l~i~G~~~~~~~~---~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea 289 (366)
T cd03822 217 ----VRLLVAGETHPDLER---YRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYA 289 (366)
T ss_pred ----eEEEEeccCccchhh---hhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHH
Confidence 999999988654110 00000134778899999999987 99999999999999999999999 999999999
Q ss_pred hhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 304 MFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 304 ~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
|+||+|||+++.++ .+.+.++.+|+++++ |+++++++|.+++++++ .+.++++++++.+.+ |+|+.+++++.++|+
T Consensus 290 ~a~G~PvI~~~~~~-~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 290 IGFGKPVISTPVGH-AEEVLDGGTGLLVPPGDPAALAEAIRRLLADPE-LAQALRARAREYARA-MSWERVAERYLRLLA 366 (366)
T ss_pred HHcCCCEEecCCCC-hheeeeCCCcEEEcCCCHHHHHHHHHHHHcChH-HHHHHHHHHHHHHhh-CCHHHHHHHHHHHhC
Confidence 99999999999998 777778889999998 99999999999999998 999999999999855 999999999999873
No 46
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=1.9e-38 Score=288.77 Aligned_cols=354 Identities=19% Similarity=0.165 Sum_probs=259.3
Q ss_pred CcchhhhHhh-HhhhhcCCceeecC--C--cccc-------ccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHH
Q psy12587 3 GATARLTITA-TAWGATGPRTTAHD--H--CFKE-------TKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYV 70 (390)
Q Consensus 3 GG~~~~~~~l-~~L~~~G~~V~~~~--~--~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (390)
||.++++..+ ++|.++||+|+++. . .... ....++.+..+...... ....+..+..+..........
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 92 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYK-KNGLLKRLLNYLSFALSALLA 92 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCC-ccchHHHHHhhhHHHHHHHHH
Confidence 8999999999 99999999999881 1 1111 12234455444322111 111112222222222222222
Q ss_pred HHhh-cCCCEEEEccccc--chhHHH---hhcccEEEEeecCCccccchhhh--hhhhcccchhhHHHHHhcCcceEEEc
Q psy12587 71 AWYS-EKPDLVFCDLVSI--CIPILQ---AKQFKVLFYCHYPDQLLSKQGSF--LKSIYRFPLNKLEEWTTCKADKIVVN 142 (390)
Q Consensus 71 ~~~~-~~~Dvi~~~~~~~--~~~~~~---~~~~~~v~~~h~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ad~ii~~ 142 (390)
...+ .+||+||++.+.. ...... ..++|+++++|+........... ...........+++.+++.+|.++++
T Consensus 93 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 172 (394)
T cd03794 93 LLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRADAIVVI 172 (394)
T ss_pred HHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHhcCCEEEEE
Confidence 2214 8999999997322 222222 22489999999754322111111 11111234567788899999999999
Q ss_pred cHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhh
Q psy12587 143 SEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSR 222 (390)
Q Consensus 143 s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~ 222 (390)
|+..++.+.. + ..+..++.++|||++...+.+......+.... ...+++.++++|++...||++.+++++..+.+.
T Consensus 173 s~~~~~~~~~-~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~ 248 (394)
T cd03794 173 SPGMREYLVR-R-GVPPEKISVIPNGVDLELFKPPPADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR 248 (394)
T ss_pred CHHHHHHHHh-c-CCCcCceEEcCCCCCHHHcCCccchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhc
Confidence 9999998873 2 34467999999999987665543221111111 334778999999999999999999999999876
Q ss_pred cccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCC-----C
Q psy12587 223 LSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHF-----G 297 (390)
Q Consensus 223 ~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~-----~ 297 (390)
++ ++++++|.++.. +.+++.+...++ ++|.++|+++++++.++|+.||++++|+..|++ |
T Consensus 249 -~~-----~~l~i~G~~~~~--------~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p 313 (394)
T cd03794 249 -PD-----IRFLIVGDGPEK--------EELKELAKALGL-DNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSP 313 (394)
T ss_pred -CC-----eEEEEeCCcccH--------HHHHHHHHHcCC-CcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCc
Confidence 53 999999998765 677776666665 689999999999999999999999999998765 7
Q ss_pred ccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHH
Q psy12587 298 IVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQ 376 (390)
Q Consensus 298 ~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (390)
++++|||++|+|||+++.++..+.+.++.+|+++++ |+++++++|.+++++++ .++++++++++.+.++|+|+.++++
T Consensus 314 ~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~ 392 (394)
T cd03794 314 SKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDDPE-ERAEMGENGRRYVEEKFSREKLAER 392 (394)
T ss_pred hHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHhhcHHHHHHh
Confidence 789999999999999999999999999889999998 99999999999999999 9999999999999889999999987
Q ss_pred H
Q psy12587 377 L 377 (390)
Q Consensus 377 ~ 377 (390)
+
T Consensus 393 ~ 393 (394)
T cd03794 393 L 393 (394)
T ss_pred c
Confidence 6
No 47
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=1.7e-38 Score=283.44 Aligned_cols=314 Identities=20% Similarity=0.182 Sum_probs=230.0
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCCE
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPDL 79 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv 79 (390)
.||+++++.+| ++|.+.||+|+++.......... ................ .............+++ .+||+
T Consensus 18 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Di 90 (335)
T cd03802 18 YGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP--LVPVVPEPLRLDAPGR-----DRAEAEALALAERALAAGDFDI 90 (335)
T ss_pred cCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc--eeeccCCCcccccchh-----hHhhHHHHHHHHHHHhcCCCCE
Confidence 69999999999 99999999999882211111110 0111100000000000 0001111111123455 89999
Q ss_pred EEEcccccchhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCC
Q psy12587 80 VFCDLVSICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDH 159 (390)
Q Consensus 80 i~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~ 159 (390)
||+|+........+..+.|+|++.|+........ ........+.++++|+..++.+...
T Consensus 91 vh~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~---------------~~~~~~~~~~~~~~s~~~~~~~~~~------ 149 (335)
T cd03802 91 VHNHSLHLPLPFARPLPVPVVTTLHGPPDPELLK---------------LYYAARPDVPFVSISDAQRRPWPPL------ 149 (335)
T ss_pred EEecCcccchhhhcccCCCEEEEecCCCCcccch---------------HHHhhCcCCeEEEecHHHHhhcccc------
Confidence 9999976555545555599999999764321110 1233567788999999888765442
Q ss_pred CceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCC
Q psy12587 160 KCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGY 239 (390)
Q Consensus 160 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~ 239 (390)
.++.++|||+|.+.+.+. + .++..++++|++.+.||++.+++++++. +++|+++|.+
T Consensus 150 ~~~~vi~ngvd~~~~~~~------------~-~~~~~i~~~Gr~~~~Kg~~~li~~~~~~----------~~~l~i~G~~ 206 (335)
T cd03802 150 PWVATVHNGIDLDDYPFR------------G-PKGDYLLFLGRISPEKGPHLAIRAARRA----------GIPLKLAGPV 206 (335)
T ss_pred cccEEecCCcChhhCCCC------------C-CCCCEEEEEEeeccccCHHHHHHHHHhc----------CCeEEEEeCC
Confidence 689999999999887652 2 2455789999999999999999997642 3899999999
Q ss_pred CCCCcchhHHHHHHHHHHHHcC-CCCcEEEecCCChHHHHHHHHhcceEEeCCC-CCCCCccHHhhhhcCCCEEEecCCC
Q psy12587 240 DPHNIENVEYYKELGVLVKKLK-LSDNVLFLTSPSDAAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGG 317 (390)
Q Consensus 240 ~~~~~~~~~y~~~~~~~~~~~~-l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~~~~~~ 317 (390)
+.. ..+.....+.. +.++|.|+|++++.++.++|+.+|++++||. .|++|++++|||+||+|||+++.++
T Consensus 207 ~~~--------~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~ 278 (335)
T cd03802 207 SDP--------DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA 278 (335)
T ss_pred CCH--------HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC
Confidence 764 44454444443 4689999999999999999999999999998 5999999999999999999999999
Q ss_pred cccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 318 PKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 318 ~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
..|++.++.+|++++ ++++++++|.++.+.+. +++++.+.++|||+.+++++.++|+
T Consensus 279 ~~e~i~~~~~g~l~~-~~~~l~~~l~~l~~~~~-------~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 279 VPEVVEDGVTGFLVD-SVEELAAAVARADRLDR-------AACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred chhheeCCCcEEEeC-CHHHHHHHHHHHhccHH-------HHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999999999999 59999999999865432 3566777799999999999999874
No 48
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.8e-38 Score=286.32 Aligned_cols=341 Identities=21% Similarity=0.214 Sum_probs=249.3
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCcccc-c--cCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKE-T--KDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EK 76 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~-~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (390)
.||+++++..| ++|.++||+|+++...... . ......+..............+.. ... ....++ .+
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~ 83 (364)
T cd03814 13 VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPP----RRR-----VRRLLDAFA 83 (364)
T ss_pred ccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccc----hhh-----HHHHHHhcC
Confidence 49999999999 9999999999988211111 0 001111111110000000000000 010 112334 89
Q ss_pred CCEEEEcccccc-h---hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 77 PDLVFCDLVSIC-I---PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 77 ~Dvi~~~~~~~~-~---~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
||+||++..... . ...+..++|+++++|+..... ...............+.+++++.+|.++++|+...+.+.+
T Consensus 84 pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~ 161 (364)
T cd03814 84 PDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEY--LRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELRA 161 (364)
T ss_pred CCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHH--hhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhc
Confidence 999999874322 2 222333489999999643211 1111122222333566778889999999999999985554
Q ss_pred HhccCCCCceeecCCCCCCCCCCCCCc-cchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccce
Q psy12587 153 TFRSLDHKCLDILYPSVYTEGLEKTTP-EPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHV 231 (390)
Q Consensus 153 ~~~~~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~ 231 (390)
. + ..++.++++|+|.+.+.+... ...+..+ ...+++.++++|++...||++.++++++.+.++ ++ +
T Consensus 162 ~-~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~-----~ 228 (364)
T cd03814 162 R-G---FRRVRLWPRGVDTELFHPRRRDEALRARL---GPPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PP-----V 228 (364)
T ss_pred c-C---CCceeecCCCccccccCcccccHHHHHHh---CCCCCeEEEEEeccccccCHHHHHHHHHHhhhc-CC-----c
Confidence 3 1 468999999999887765432 1222222 123568899999999999999999999999887 54 9
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEE
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVI 311 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi 311 (390)
+|+++|.++.. +.++ +..++|.+.|+++.+++.++|+.||++++||..|++|++++|||+||+|||
T Consensus 229 ~l~i~G~~~~~--------~~~~------~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI 294 (364)
T cd03814 229 RLVIVGDGPAR--------ARLE------ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVV 294 (364)
T ss_pred eEEEEeCCchH--------HHHh------ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEE
Confidence 99999988653 3333 345789999999999999999999999999999999999999999999999
Q ss_pred EecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 312 AVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 312 ~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+++.++..+++.++.+|+++++ |.++++++|.+++++++ .++++++++++.+ ++|+|+.+++++.++|+
T Consensus 295 ~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 295 APDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLADPE-LRRRMAARARAEA-ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred EcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHH-HHHHHHHHHHHHH-hhcCHHHHHHHHHHhhC
Confidence 9999999999999899999998 99999999999999999 9999999999998 88999999999998873
No 49
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=4.6e-38 Score=282.74 Aligned_cols=339 Identities=22% Similarity=0.216 Sum_probs=253.2
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecC--Cccc-cccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHD--HCFK-ETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EK 76 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~--~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (390)
.||.++++..+ ++|.+.||+|+++. .... .....++.+..++.... ....+..+.... .....++ .+
T Consensus 9 ~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~ 80 (359)
T cd03808 9 DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRR--GINPFKDLKALL------RLYRLLRKER 80 (359)
T ss_pred chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEecccccc--ccChHhHHHHHH------HHHHHHHhcC
Confidence 48999999999 99999999999881 1111 23334455554432210 111111111111 1112344 89
Q ss_pred CCEEEEcccccchhH---HH-hhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 77 PDLVFCDLVSICIPI---LQ-AKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 77 ~Dvi~~~~~~~~~~~---~~-~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
||+||++........ .+ ....++++..|+........ .........++++.++.+|.++++|+...+.+.+
T Consensus 81 ~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 155 (359)
T cd03808 81 PDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTSG-----GLKRRLYLLLERLALRFTDKVIFQNEDDRDLALK 155 (359)
T ss_pred CCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhccc-----hhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHHH
Confidence 999999975433221 22 22377777777653322111 1123344567788899999999999999999988
Q ss_pred HhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceE
Q psy12587 153 TFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVK 232 (390)
Q Consensus 153 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~ 232 (390)
.+...+..++.+.+++++.+.+...... ...+++.++++|++.+.||++.++++++.+.+.+++ ++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~-----~~ 221 (359)
T cd03808 156 LGIIKKKKTVLIPGSGVDLDRFSPSPEP---------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPN-----VR 221 (359)
T ss_pred hcCCCcCceEEecCCCCChhhcCccccc---------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCC-----eE
Confidence 7542223577888899988776553211 123678999999999999999999999999877765 99
Q ss_pred EEEEcCCCCCCcchhHHHHHHHH-HHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEE
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGV-LVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVI 311 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~-~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi 311 (390)
|+++|.++.. ..... .+.+.+..++|.+.|+ .+++.++|+.||++++||..|++|++++|||+||+|||
T Consensus 222 l~i~G~~~~~--------~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi 291 (359)
T cd03808 222 LLLVGDGDEE--------NPAAILEIEKLGLEGRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVI 291 (359)
T ss_pred EEEEcCCCcc--------hhhHHHHHHhcCCcceEEEeec--cccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEE
Confidence 9999998765 33333 2666777789999998 45678999999999999999999999999999999999
Q ss_pred EecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 312 AVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 312 ~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
+++.++..+++.++.+|+++++ |+++++++|.+++++++ .+.++++++++.+.++|+|+.+++++.
T Consensus 292 ~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 292 ATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDPE-LRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred EecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 9999999999998999999998 99999999999999999 999999999999889999999998875
No 50
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=1.4e-38 Score=286.52 Aligned_cols=322 Identities=17% Similarity=0.141 Sum_probs=234.4
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCcc----ccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHCF----KETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
.||+++++.++ ++|.+.||+|+++ .... ......+..+..... ... ....++..+. .+++
T Consensus 11 ~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~-----~~~~ 77 (358)
T cd03812 11 RGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPA----RKK----NPLKYFKKLY-----KLIK 77 (358)
T ss_pred CccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecC----CCc----cHHHHHHHHH-----HHHh
Confidence 69999999999 9999999999888 1111 111222333333211 111 1111121111 1344
Q ss_pred -cCCCEEEEcccccchhHHH---hhcc-cEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 75 -EKPDLVFCDLVSICIPILQ---AKQF-KVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 75 -~~~Dvi~~~~~~~~~~~~~---~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
.+||+||+|.......... ..+. .++++.|+......... .... ...+++.+.+.+|.++++|+...+.
T Consensus 78 ~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~i~~s~~~~~~ 151 (358)
T cd03812 78 KNKYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSHDKKK----KILK--YKVLRKLINRLATDYLACSEEAGKW 151 (358)
T ss_pred cCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEEeccccccccccc----hhhH--HHHHHHHHHhcCCEEEEcCHHHHHH
Confidence 8999999998653332222 2233 44666776432211111 1100 0355677788999999999999988
Q ss_pred HHHHhccCCCCceeecCCCCCCCCCCCCCcc-chhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccc
Q psy12587 150 VQATFRSLDHKCLDILYPSVYTEGLEKTTPE-PIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
+.+. ....++.++|||+|.+.+...... ..+...+ ...++++|+++|++.+.||++.+++++..+.++.++
T Consensus 152 ~~~~---~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~--- 223 (358)
T cd03812 152 LFGK---VKNKKFKVIPNGIDLEKFIFNEEIRKKRRELG--ILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPN--- 223 (358)
T ss_pred HHhC---CCcccEEEEeccCcHHHcCCCchhhhHHHHcC--CCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCC---
Confidence 8765 226789999999998776543221 1122222 334778999999999999999999999999988875
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
++++++|+++.. +.+++.++++++.++|.++|+ .+++.++|+.||++++||..|++|++++|||++|+
T Consensus 224 --~~l~ivG~g~~~--------~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~ 291 (358)
T cd03812 224 --AKLLLVGDGELE--------EEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGL 291 (358)
T ss_pred --eEEEEEeCCchH--------HHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCC
Confidence 999999998765 788888989999999999998 45678999999999999999999999999999999
Q ss_pred CEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q psy12587 309 PVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 309 pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 364 (390)
|||+|+.++..+++.+ ..+++..+ ++++++++|.+++++++ .++.+...+....
T Consensus 292 PvI~s~~~~~~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~-~~~~~~~~~~~~~ 346 (358)
T cd03812 292 PCILSDTITKEVDLTD-LVKFLSLDESPEIWAEEILKLKSEDR-RERSSESIKKKGL 346 (358)
T ss_pred CEEEEcCCchhhhhcc-CccEEeCCCCHHHHHHHHHHHHhCcc-hhhhhhhhhhccc
Confidence 9999999999999988 45555555 78999999999999999 8888877776655
No 51
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=6.4e-38 Score=280.63 Aligned_cols=326 Identities=22% Similarity=0.262 Sum_probs=243.4
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCcc----ccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-c
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCF----KETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-E 75 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (390)
.||+++++..+ ++|.+.||+|+++.... ......++.+..+...........+.. .. ....+++ .
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~l~~~ 82 (348)
T cd03820 12 AGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKK----LR-----RLRKLLKNN 82 (348)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCCccceeecccccccchhccccc----hH-----HHHHhhccc
Confidence 59999999999 99999999999881111 111222333333322111100000000 11 1112455 8
Q ss_pred CCCEEEEcccccc-hhHHHhhcc-cEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHH
Q psy12587 76 KPDLVFCDLVSIC-IPILQAKQF-KVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQAT 153 (390)
Q Consensus 76 ~~Dvi~~~~~~~~-~~~~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 153 (390)
+||+|+++.+... +......+. |++.+.|+.......... ....++.+++.+|.+++.|+..+....
T Consensus 83 ~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~d~ii~~s~~~~~~~~-- 151 (348)
T cd03820 83 KPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPDAYKKRLR---------RLLLRRLLYRRADAVVVLTEEDRALYY-- 151 (348)
T ss_pred CCCEEEEcCchHHHHHHHHhhccccEEEecCCCccchhhhhH---------HHHHHHHHHhcCCEEEEeCHHHHHHhh--
Confidence 9999999996521 222222334 999999975432111100 011467889999999999999872221
Q ss_pred hccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEE
Q psy12587 154 FRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKL 233 (390)
Q Consensus 154 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l 233 (390)
.....++.++|||++...+... ...+++.++++|++.+.||++.++++++.+.+..++ ++|
T Consensus 152 --~~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~-----~~l 212 (348)
T cd03820 152 --KKFNKNVVVIPNPLPFPPEEPS------------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPD-----WKL 212 (348)
T ss_pred --ccCCCCeEEecCCcChhhcccc------------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCC-----eEE
Confidence 2236789999999988765542 123677899999999999999999999999887775 999
Q ss_pred EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEe
Q psy12587 234 VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 234 ~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~ 313 (390)
+++|.++.. ..+++.++++++.++|.+.|. .+++.++|++||++++||..|++|++++|||+||+|||++
T Consensus 213 ~i~G~~~~~--------~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~ 282 (348)
T cd03820 213 RIVGDGPER--------EALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISF 282 (348)
T ss_pred EEEeCCCCH--------HHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEe
Confidence 999998765 778888899999999999998 6778999999999999999999999999999999999999
Q ss_pred cCC-CcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 314 NSG-GPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 314 ~~~-~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
+.+ +..+++.++.+|+++++ |+++++++|.+++++++ .++++++++++.+ ++|+|+.++++|.
T Consensus 283 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 347 (348)
T cd03820 283 DCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMEDEE-LRKRMGANARESA-ERFSIENIIKQWE 347 (348)
T ss_pred cCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcCHH-HHHHHHHHHHHHH-HHhCHHHHHHHhc
Confidence 975 55677777779999998 99999999999999999 9999999997665 8999999999875
No 52
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=1e-37 Score=281.78 Aligned_cols=322 Identities=19% Similarity=0.224 Sum_probs=243.5
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCCE
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPDL 79 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv 79 (390)
.||+++++..+ ++|.++||+|+++..... .+ ...++ .+||+
T Consensus 12 ~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-------------------------~~------------~~~~~~~~~di 54 (365)
T cd03825 12 SGGAARAAYRLHRALQAAGVDSTMLVQEKK-------------------------AL------------ISKIEIINADI 54 (365)
T ss_pred CCcHHHHHHHHHHHHHhcCCceeEEEeecc-------------------------hh------------hhChhcccCCE
Confidence 59999999999 999999999988711100 00 01233 89999
Q ss_pred EEEcccccch---hHHHhh--cccEEEEeecCCccccch------hhh---------hh-----hhcccchhhHHHHHhc
Q psy12587 80 VFCDLVSICI---PILQAK--QFKVLFYCHYPDQLLSKQ------GSF---------LK-----SIYRFPLNKLEEWTTC 134 (390)
Q Consensus 80 i~~~~~~~~~---~~~~~~--~~~~v~~~h~~~~~~~~~------~~~---------~~-----~~~~~~~~~~~~~~~~ 134 (390)
||+|...... ...... ++|+|+++|+........ ... .. ................
T Consensus 55 ih~~~~~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (365)
T cd03825 55 VHLHWIHGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWAD 134 (365)
T ss_pred EEEEccccCccCHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Confidence 9998843222 222222 699999999754321100 000 00 0111111122222235
Q ss_pred CcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccc--cCCHHHH
Q psy12587 135 KADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYER--KKNLELA 212 (390)
Q Consensus 135 ~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~--~K~~~~l 212 (390)
.++.++++|+..++.+.+.+. .+..++.++|||+|.+.+.+......+..++ ++ .+..++++.|+... .||++.+
T Consensus 135 ~~~~~v~~s~~~~~~~~~~~~-~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~K~~~~l 211 (365)
T cd03825 135 LNLTIVAPSRWLADCARSSSL-FKGIPIEVIPNGIDTTIFRPRDKREARKRLG-LP-ADKKIILFGAVGGTDPRKGFDEL 211 (365)
T ss_pred CCcEEEehhHHHHHHHHhccc-cCCCceEEeCCCCcccccCCCcHHHHHHHhC-CC-CCCeEEEEEecCCCccccCHHHH
Confidence 678899999999999888653 3367999999999998876655444444443 23 35566667777655 8999999
Q ss_pred HHHHHHHHhh-cccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC-hHHHHHHHHhcceEEeC
Q psy12587 213 IYSLNSLRSR-LSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS-DAAKISLFKFCHCIIYT 290 (390)
Q Consensus 213 l~a~~~l~~~-~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~-~~e~~~~~~~adv~v~p 290 (390)
++++..+.++ .+ +++++++|.++.. .. .++.++|.++|+++ ++++..+|+.||++++|
T Consensus 212 l~a~~~l~~~~~~-----~~~~~i~G~~~~~--------~~-------~~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~p 271 (365)
T cd03825 212 IEALKRLAERWKD-----DIELVVFGASDPE--------IP-------PDLPFPVHYLGSLNDDESLALIYSAADVFVVP 271 (365)
T ss_pred HHHHHHhhhccCC-----CeEEEEeCCCchh--------hh-------ccCCCceEecCCcCCHHHHHHHHHhCCEEEec
Confidence 9999998875 34 4999999988643 11 13457899999999 78899999999999999
Q ss_pred CCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcC
Q psy12587 291 PSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFS 369 (390)
Q Consensus 291 s~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 369 (390)
|..|++|++++|||+||+|||+++.++..|++.++.+|++++. |++++++++.+++++++ .+.++++++++.+.++||
T Consensus 272 s~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~s 350 (365)
T cd03825 272 SLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPD-EREELGEAARELAENEFD 350 (365)
T ss_pred cccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999889999998 99999999999999998 899999999999988999
Q ss_pred HHHHHHHHHHHHHhh
Q psy12587 370 FQAFSIQLNTIVNNM 384 (390)
Q Consensus 370 ~~~~~~~~~~~~~~~ 384 (390)
|+.+++++.++|+++
T Consensus 351 ~~~~~~~~~~~y~~~ 365 (365)
T cd03825 351 SRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999864
No 53
>KOG1111|consensus
Probab=100.00 E-value=4.3e-39 Score=264.99 Aligned_cols=345 Identities=16% Similarity=0.208 Sum_probs=264.2
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCccccc-----cCCCcceEEecccc--ccccchhhHHHHHHHHHHHHHHHHHHh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKET-----KDGTLPVKVIGDWL--PRNIFGKFYALCMYLRMIVIALYVAWY 73 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~-----~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (390)
.||.|.+++.| +.|.+.||.|.+.+..+.+. ..+++.+.+++... ....++..+.-...++.. ++
T Consensus 14 ~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pllr~i-------~l 86 (426)
T KOG1111|consen 14 TGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLLRPI-------LL 86 (426)
T ss_pred CCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCcccchh-------hh
Confidence 69999999999 99999999988874433322 23456666664221 122233333333334432 33
Q ss_pred hcCCCEEEEcccccch-----hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHH
Q psy12587 74 SEKPDLVFCDLVSICI-----PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKS 148 (390)
Q Consensus 74 ~~~~Dvi~~~~~~~~~-----~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 148 (390)
+++..+||.|++.+.+ ..++..+-++|++-|....+........+ .+....+...|.+||+|...++
T Consensus 87 rE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHSlfGfad~~si~~n--------~ll~~sL~~id~~IcVshtske 158 (426)
T KOG1111|consen 87 RERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHSLFGFADIGSILTN--------KLLPLSLANIDRIICVSHTSKE 158 (426)
T ss_pred hhceEEEecCChHHHHHHHHHHHHHhcCceEEEeccccccccchhhhhhc--------ceeeeeecCCCcEEEEeecCCC
Confidence 3899999999975544 34455558999999975443332222222 2334557788999999987776
Q ss_pred HHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccc
Q psy12587 149 VVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 149 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
...-+ ..+.+.++.+|||.++...|.|.+... +..+...++.++|+-.+||+|.+++++.++.+++|+
T Consensus 159 ntvlr-~~L~p~kvsvIPnAv~~~~f~P~~~~~--------~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~--- 226 (426)
T KOG1111|consen 159 NTVLR-GALAPAKVSVIPNAVVTHTFTPDAADK--------PSADIITIVVASRLVYRKGIDLLLEIIPSVCDKHPE--- 226 (426)
T ss_pred ceEEE-eccCHhHeeeccceeeccccccCcccc--------CCCCeeEEEEEeeeeeccchHHHHHHHHHHHhcCCC---
Confidence 53322 345578999999999999998854331 444558899999999999999999999999999996
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
++|+|+|+||.. ..+++..+++.+.++|.++|.++++++.+.|.+.|+|++||..|.|+++++||++||+
T Consensus 227 --vrfii~GDGPk~--------i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL 296 (426)
T KOG1111|consen 227 --VRFIIIGDGPKR--------IDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGL 296 (426)
T ss_pred --eeEEEecCCccc--------chHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCC
Confidence 999999999988 8899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 309 PVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 309 pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
|||++..||.+|++.++ .-.+..+++++++++++++++.-. .......+.+.+.|+|+..+++..++|.++...+
T Consensus 297 ~VVsTrVGGIpeVLP~d-~i~~~~~~~~dl~~~v~~ai~~~~----~~p~~~h~~v~~~y~w~dVa~rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 297 PVVSTRVGGIPEVLPED-MITLGEPGPDDLVGAVEKAITKLR----TLPLEFHDRVKKMYSWKDVAERTEKVYDRAATTS 371 (426)
T ss_pred EEEEeecCCccccCCcc-ceeccCCChHHHHHHHHHHHHHhc----cCchhHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999765 222333388999999888876432 2234456667789999999999999999987654
No 54
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=1.2e-37 Score=285.85 Aligned_cols=277 Identities=13% Similarity=0.180 Sum_probs=217.9
Q ss_pred cCCCEEEEcccccch-hHHHhh-cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 75 EKPDLVFCDLVSICI-PILQAK-QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~-~~~~~~-~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
.++||+|++.+.... .+.... ..|.++++|+.+.......... .++...+... ....+.+|.++++|+..++.+.+
T Consensus 210 ~~~di~i~dr~~~~~~~~~~~~~~~~~v~~lH~~h~~~~~~~~~~-~~~~~~y~~~-~~~~~~~D~iI~~S~~~~~~l~~ 287 (500)
T TIGR02918 210 TKKDIIILDRSTGIGQAVLENKGPAKLGVVVHAEHFSESATNETY-ILWNNYYEYQ-FSNADYIDFFITATDIQNQILKN 287 (500)
T ss_pred CCCCEEEEcCCcccchHHHhcCCCceEEEEEChhhhcCccCcchh-HHHHHHHHHH-HhchhhCCEEEECCHHHHHHHHH
Confidence 789999998855433 333333 2899999997443222111100 0111111111 12256789999999999998887
Q ss_pred HhccC--CCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccc
Q psy12587 153 TFRSL--DHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTH 230 (390)
Q Consensus 153 ~~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~ 230 (390)
.++.. ...++.++|||++...+.+. ....+..|+++||+.+.||++.+++|+..+.++.|+
T Consensus 288 ~~~~~~~~~~ki~viP~g~~~~~~~~~------------~~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~----- 350 (500)
T TIGR02918 288 QFKKYYNIEPRIYTIPVGSLDELQYPE------------QERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPE----- 350 (500)
T ss_pred HhhhhcCCCCcEEEEcCCCcccccCcc------------cccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCC-----
Confidence 65421 24689999999765443321 112457899999999999999999999999988886
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCE
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPV 310 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pv 310 (390)
++|.|+|.|+.. +.++++++++++.++|.+.|+. ++.++|+.||++++||..||||++++||||||+||
T Consensus 351 ~~l~i~G~G~~~--------~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PV 419 (500)
T TIGR02918 351 LTFDIYGEGGEK--------QKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGM 419 (500)
T ss_pred eEEEEEECchhH--------HHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCE
Confidence 999999999765 8899999999999999999976 35689999999999999999999999999999999
Q ss_pred EEecCC-CcccceecCcceeeecC-----C----HHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy12587 311 IAVNSG-GPKESVVDGRTGFLCES-----N----EEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTI 380 (390)
Q Consensus 311 i~~~~~-~~~e~i~~~~~g~~~~~-----~----~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
|+++.+ |.+|++.++.+|++++. | +++++++|.+++ +++ .+++|++++++.+ ++|+|+.++++|.++
T Consensus 420 I~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~~~-~~~~~~~~a~~~a-~~fs~~~v~~~w~~l 496 (500)
T TIGR02918 420 IGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-NSN-DIDAFHEYSYQIA-EGFLTANIIEKWKKL 496 (500)
T ss_pred EEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh-ChH-HHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence 999986 89999999999999973 2 889999999999 566 7899999999987 899999999999999
Q ss_pred HHhh
Q psy12587 381 VNNM 384 (390)
Q Consensus 381 ~~~~ 384 (390)
++++
T Consensus 497 l~~~ 500 (500)
T TIGR02918 497 VREV 500 (500)
T ss_pred HhhC
Confidence 8764
No 55
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=7.7e-37 Score=275.15 Aligned_cols=332 Identities=16% Similarity=0.166 Sum_probs=238.6
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCccc--cccCCCcceEEec--cccccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHCFK--ETKDGTLPVKVIG--DWLPRNIFGKFYALCMYLRMIVIALYVAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~~~--~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
.||+++++.++ ++|.++||+|+++ ..... ............. ................+...........+++
T Consensus 14 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (359)
T cd03823 14 VGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYDNPAVVAEFARLLE 93 (359)
T ss_pred ccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhccCHHHHHHHHHHHH
Confidence 59999999999 9999999999988 11111 1111111111110 0001111111111111111111222234555
Q ss_pred -cCCCEEEEcccccch-hH---HHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 75 -EKPDLVFCDLVSICI-PI---LQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 75 -~~~Dvi~~~~~~~~~-~~---~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
.+||+||++...... .+ .+..++|+++++|+....... . .......|.++++|+...+.
T Consensus 94 ~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~-----~-----------~~~~~~~d~ii~~s~~~~~~ 157 (359)
T cd03823 94 DFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPR-----Q-----------GLFKKGGDAVIAPSRFLLDR 157 (359)
T ss_pred HcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecch-----h-----------hhhccCCCEEEEeCHHHHHH
Confidence 899999999853221 11 223348999999975322110 0 11112339999999999999
Q ss_pred HHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccccccc
Q psy12587 150 VQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKT 229 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~ 229 (390)
+.+... ...++.++|||+|...+.+... . ...++++++++|++.+.||++.++++++.+.+ +
T Consensus 158 ~~~~~~--~~~~~~vi~n~~~~~~~~~~~~------~---~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~----- 219 (359)
T cd03823 158 YVANGL--FAEKISVIRNGIDLDRAKRPRR------A---PPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--G----- 219 (359)
T ss_pred HHHcCC--CccceEEecCCcChhhcccccc------C---CCCCceEEEEEecCccccCHHHHHHHHHHHHh--c-----
Confidence 988632 1478999999999887765332 0 22477899999999999999999999999877 3
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCC-CCCCCccHHhhhhcCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKR 308 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~ 308 (390)
+++|+++|.++.. ....... +..++|.++|+++.+++.++|+.||++++||. .|++|++++|||+||+
T Consensus 220 ~~~l~i~G~~~~~--------~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~ 288 (359)
T cd03823 220 DIELVIVGNGLEL--------EEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGV 288 (359)
T ss_pred CcEEEEEcCchhh--------hHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCC
Confidence 4999999998754 2222222 45689999999999999999999999999998 7999999999999999
Q ss_pred CEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 309 PVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 309 pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
|||+++.++..|++.++.+|+++++ |++++++++.+++++++ .++.+++++++.... +.+++++.++|++
T Consensus 289 Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 359 (359)
T cd03823 289 PVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDDPD-LLERLRAGIEPPRSI----EDQAEEYLKLYRS 359 (359)
T ss_pred CEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhChH-HHHHHHHhHHHhhhH----HHHHHHHHHHhhC
Confidence 9999999999999999989999998 99999999999999998 999999988777632 8899999988863
No 56
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=9.9e-37 Score=276.68 Aligned_cols=272 Identities=18% Similarity=0.218 Sum_probs=222.4
Q ss_pred cCCCEEEEcccccchhH-HHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 75 EKPDLVFCDLVSICIPI-LQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~-~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
.++|++|++........ ..+.+ .++|.+.|+.+.+..... .....+.+.+++.+|.++++|+..++.
T Consensus 126 ~~~~v~~sy~~~~~~~~~~~l~~~~~~~~~i~~~Hg~d~~~~~~~--------~~~~~~~~~~~~~~d~ii~~S~~~~~~ 197 (407)
T cd04946 126 GQGTVFYSYWLHETAYALALLKKEYLRKRVISRAHGYDLYEDRYP--------SGYIPLRRYLLSSLDAVFPCSEQGRNY 197 (407)
T ss_pred cCceEEEEecCchHHHHHHHHHHhcCCceEEEEeccchhhhhhcc--------ccchHHHHHHHhcCCEEEECCHHHHHH
Confidence 56778888764332222 22222 348999998654321111 111234456688999999999999999
Q ss_pred HHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccccccc
Q psy12587 150 VQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKT 229 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~ 229 (390)
+.+.++.. .+++.++++|++...+.... ..++.+.++++|++.+.||++.+++++..+.+..|+ .
T Consensus 198 l~~~~~~~-~~ki~vi~~gv~~~~~~~~~-----------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~---~ 262 (407)
T cd04946 198 LQKRYPAY-KEKIKVSYLGVSDPGIISKP-----------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPS---I 262 (407)
T ss_pred HHHHCCCc-cccEEEEECCcccccccCCC-----------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCC---c
Confidence 99988754 67899999999876554321 223678899999999999999999999999988753 2
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhhcC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCK 307 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G 307 (390)
++.++++|+|+.. +.+++++++.+..++|.|+|+++++++.++|+. +|++++||..||+|++++|||+||
T Consensus 263 ~l~~~iiG~g~~~--------~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G 334 (407)
T cd04946 263 KIKWTHIGGGPLE--------DTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFG 334 (407)
T ss_pred eEEEEEEeCchHH--------HHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcC
Confidence 3778889998765 788888888888889999999999999999986 778999999999999999999999
Q ss_pred CCEEEecCCCcccceecCcceeeecC--CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 308 RPVIAVNSGGPKESVVDGRTGFLCES--NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 308 ~pvi~~~~~~~~e~i~~~~~g~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
+|||+|+.||.+|++.++.+|+++++ |+++++++|.++++|++ .+.+|+++|++.+.++|+|+...+++.
T Consensus 335 ~PVIas~vgg~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~-~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 335 IPVIATNVGGTPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEE-EYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred CCEEeCCCCCcHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 99999999999999999999999875 79999999999999998 999999999999999999999988875
No 57
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.4e-36 Score=272.67 Aligned_cols=318 Identities=11% Similarity=0.065 Sum_probs=221.0
Q ss_pred CcchhhhHhh-HhhhhcCC-ceeec---C-Ccc-ccccCCCcceEEeccccccccchhhHHHHHHHHH----HHHHHHHH
Q psy12587 3 GATARLTITA-TAWGATGP-RTTAH---D-HCF-KETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRM----IVIALYVA 71 (390)
Q Consensus 3 GG~~~~~~~l-~~L~~~G~-~V~~~---~-~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 71 (390)
+|.+..+..+ ..|.++|| +|+++ + ... ......++.+++.+.............+..++.. +....+..
T Consensus 15 ~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (371)
T PLN02275 15 FGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAIQFLMLLWFL 94 (371)
T ss_pred CCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCCcccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4666666677 88888776 69888 1 111 2223345777776431111112222221112221 11111111
Q ss_pred Hhh-cCCCEEEEcccccch------hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccH
Q psy12587 72 WYS-EKPDLVFCDLVSICI------PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSE 144 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~~~------~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~ 144 (390)
..+ .+||+||+|+++... .+.+..+.|+|+++|+.+................+..++++++++.+|.++++|+
T Consensus 95 ~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~S~ 174 (371)
T PLN02275 95 CVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLCVTK 174 (371)
T ss_pred HhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEECCH
Confidence 245 899999998754311 1223445899999997532111111111223334567889999999999999999
Q ss_pred hHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHh---
Q psy12587 145 FTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRS--- 221 (390)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~--- 221 (390)
.+++.+.+.++ . ++.++||+. .+.+.+.... ... ..+...+++++|++.+.||++.+++|+..+..
T Consensus 175 ~~~~~l~~~~g-~---~i~vi~n~~-~~~f~~~~~~---~~~---~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~ 243 (371)
T PLN02275 175 AMQHELDQNWG-I---RATVLYDQP-PEFFRPASLE---IRL---RPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVA 243 (371)
T ss_pred HHHHHHHHhcC-C---CeEEECCCC-HHHcCcCCch---hcc---cCCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhh
Confidence 99999987544 2 288999984 3445443211 111 22345677899999999999999999998742
Q ss_pred --------------hcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec-CCChHHHHHHHHhcce
Q psy12587 222 --------------RLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT-SPSDAAKISLFKFCHC 286 (390)
Q Consensus 222 --------------~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g-~~~~~e~~~~~~~adv 286 (390)
..| +++|+|+|+|+.. ++++++++++++++ +.+.+ +++.+++..+|+.||+
T Consensus 244 ~~~~~~~~~~~~~~~~~-----~i~l~ivG~G~~~--------~~l~~~~~~~~l~~-v~~~~~~~~~~~~~~~l~~aDv 309 (371)
T PLN02275 244 ARLNESDSASGKQSLYP-----RLLFIITGKGPQK--------AMYEEKISRLNLRH-VAFRTMWLEAEDYPLLLGSADL 309 (371)
T ss_pred hccccccccccccccCC-----CeEEEEEeCCCCH--------HHHHHHHHHcCCCc-eEEEcCCCCHHHHHHHHHhCCE
Confidence 234 4999999999876 89999999999965 77765 6999999999999999
Q ss_pred EEeCCC---CCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 287 IIYTPS---NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 287 ~v~ps~---~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
+++|+. .|++|++++||||||+|||+++.++.+|++.++.+|++++ ++++++++|.+++
T Consensus 310 ~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~-~~~~la~~i~~l~ 371 (371)
T PLN02275 310 GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS-SSSELADQLLELL 371 (371)
T ss_pred EEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC-CHHHHHHHHHHhC
Confidence 997632 4889999999999999999999999999999999999998 8999999998874
No 58
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=1.6e-36 Score=271.97 Aligned_cols=329 Identities=24% Similarity=0.278 Sum_probs=243.7
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCccccccCCCcce----EEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-c
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKETKDGTLPV----KVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-E 75 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (390)
.||+++++..+ ++|.+.||+|+++.............. ..... ........ ..+.. ....+++ .
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~-----~~~~~~~~~ 80 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRV-LKLKSLRD----LLAIL-----RLRRLLRKE 80 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceee-eecccccc----hhHHH-----HHHHHHHhc
Confidence 59999999999 999999999998811111111000000 00000 00000000 01111 1112444 8
Q ss_pred CCCEEEEccc-ccchhHHHhh--cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 76 KPDLVFCDLV-SICIPILQAK--QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 76 ~~Dvi~~~~~-~~~~~~~~~~--~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
+||+|+++.. ...+...... ++|+++++|+............. .+++..++.+|.++++|+..++.+.+
T Consensus 81 ~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~d~ii~~s~~~~~~~~~ 152 (353)
T cd03811 81 KPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLL--------LLIRKLYRRADKIVAVSEGVKEDLLK 152 (353)
T ss_pred CCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhhhccchhHH--------HHHHhhccccceEEEeccchhhhHHH
Confidence 9999999987 3333222222 38999999976443221111100 45678899999999999999999999
Q ss_pred HhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceE
Q psy12587 153 TFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVK 232 (390)
Q Consensus 153 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~ 232 (390)
.++. +..++.++|||++...+........ ... ..+++++++++|++.+.||++.++++++.+.++.++ ++
T Consensus 153 ~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~-----~~ 222 (353)
T cd03811 153 LLGI-PPDKIEVIYNPIDIEEIRALAEEPL--ELG--IPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPD-----AR 222 (353)
T ss_pred hhcC-CccccEEecCCcChhhcCcccchhh--hcC--CCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCC-----ce
Confidence 8763 2578999999999887765432211 111 234778999999999999999999999999987664 99
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
|+++|.++.. +.+++.++++++.++|.+.|++++ +.++++.||++++||..|++|++++|||++|+|||+
T Consensus 223 l~i~G~~~~~--------~~~~~~~~~~~~~~~v~~~g~~~~--~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~ 292 (353)
T cd03811 223 LVILGDGPLR--------EELEALAKELGLADRVHFLGFQSN--PYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVA 292 (353)
T ss_pred EEEEcCCccH--------HHHHHHHHhcCCCccEEEecccCC--HHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEE
Confidence 9999998765 778889999999999999999764 579999999999999999999999999999999999
Q ss_pred ecCCCcccceecCcceeeecC-CHHHH---HHHHHHHhcCChhHHHHHHHHHHHHHhhhcC
Q psy12587 313 VNSGGPKESVVDGRTGFLCES-NEEAF---AKAMKKIVDNDGNIIQQFSQFGFNRFNEKFS 369 (390)
Q Consensus 313 ~~~~~~~e~i~~~~~g~~~~~-~~~~l---~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 369 (390)
++.++..|++.++.+|+++++ +.+++ ++.+..+.++++ .+.++++++++.+.++|+
T Consensus 293 ~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 293 TDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLLDPE-LRERLAAAARERVAREYS 352 (353)
T ss_pred cCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCChH-HHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998 88888 778888888888 889999888888877775
No 59
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=4.5e-37 Score=279.36 Aligned_cols=284 Identities=14% Similarity=0.123 Sum_probs=214.2
Q ss_pred HHhh-cCCCEEEEcccccchhHH-HhhcccEEEEeecCCccccchh----hh-hhhhcc---cchhhHHHHHhcCcceEE
Q psy12587 71 AWYS-EKPDLVFCDLVSICIPIL-QAKQFKVLFYCHYPDQLLSKQG----SF-LKSIYR---FPLNKLEEWTTCKADKIV 140 (390)
Q Consensus 71 ~~~~-~~~Dvi~~~~~~~~~~~~-~~~~~~~v~~~h~~~~~~~~~~----~~-~~~~~~---~~~~~~~~~~~~~ad~ii 140 (390)
.+++ .++|+||+++...+..+. +..++|+|++.|+.+...+... .. .+..++ ..+..+++.+++++|.++
T Consensus 98 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi 177 (397)
T TIGR03087 98 ALLAAEPVDAIVVFSSAMAQYVTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYERAIAARFDAAT 177 (397)
T ss_pred HHHhhCCCCEEEEeccccceeccccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHhhCCeEE
Confidence 3555 899999999864443332 2345899999997542111110 01 111111 223467888999999999
Q ss_pred EccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHH----HHH
Q psy12587 141 VNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAI----YSL 216 (390)
Q Consensus 141 ~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll----~a~ 216 (390)
++|+..++.+.+.++. ...++.++|||+|.+.|.+..... .. ++ .+..+++|+|++.+.||++.++ +++
T Consensus 178 ~~S~~~~~~l~~~~~~-~~~~v~vipngvd~~~f~~~~~~~--~~---~~-~~~~~ilf~G~l~~~k~~~~l~~~~~~~~ 250 (397)
T TIGR03087 178 FVSRAEAELFRRLAPE-AAGRITAFPNGVDADFFSPDRDYP--NP---YP-PGKRVLVFTGAMDYWPNIDAVVWFAERVF 250 (397)
T ss_pred EcCHHHHHHHHHhCCC-CCCCeEEeecccchhhcCCCcccc--CC---CC-CCCcEEEEEEecCCccCHHHHHHHHHHHH
Confidence 9999999999876442 256899999999998876542210 10 11 2456889999999999999987 456
Q ss_pred HHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCC-CCC
Q psy12587 217 NSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS-NEH 295 (390)
Q Consensus 217 ~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~-~e~ 295 (390)
..+.+..|+ ++|+|+|+++. +++++ ++..++|.|+|++++ +..+|+.||++++||. .||
T Consensus 251 ~~l~~~~p~-----~~l~ivG~g~~---------~~~~~----l~~~~~V~~~G~v~~--~~~~~~~adv~v~Ps~~~eG 310 (397)
T TIGR03087 251 PAVRARRPA-----AEFYIVGAKPS---------PAVRA----LAALPGVTVTGSVAD--VRPYLAHAAVAVAPLRIARG 310 (397)
T ss_pred HHHHHHCCC-----cEEEEECCCCh---------HHHHH----hccCCCeEEeeecCC--HHHHHHhCCEEEecccccCC
Confidence 666666775 99999999864 33333 333578999999984 5899999999999997 599
Q ss_pred CCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHH
Q psy12587 296 FGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSI 375 (390)
Q Consensus 296 ~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (390)
+|++++|||+||+|||+|+.++. .+...+++|++++.|+++++++|.++++|++ .+++|++++++.+.++|||+..++
T Consensus 311 ~~~~~lEAma~G~PVV~t~~~~~-~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~-~~~~~~~~ar~~v~~~fsw~~~~~ 388 (397)
T TIGR03087 311 IQNKVLEAMAMAKPVVASPEAAE-GIDALPGAELLVAADPADFAAAILALLANPA-EREELGQAARRRVLQHYHWPRNLA 388 (397)
T ss_pred cccHHHHHHHcCCCEEecCcccc-cccccCCcceEeCCCHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999997532 3333445788875699999999999999998 999999999999989999999999
Q ss_pred HHHHHHHh
Q psy12587 376 QLNTIVNN 383 (390)
Q Consensus 376 ~~~~~~~~ 383 (390)
++.++++.
T Consensus 389 ~~~~~l~~ 396 (397)
T TIGR03087 389 RLDALLEQ 396 (397)
T ss_pred HHHHHhcC
Confidence 99998853
No 60
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1.3e-35 Score=265.42 Aligned_cols=269 Identities=15% Similarity=0.118 Sum_probs=195.2
Q ss_pred Hhh-cCCCEEEEcccccchh---HHHhhc--ccEEEEeecCCccccc-hh-hhhhhhcccchhhHHHHHhc-CcceEEEc
Q psy12587 72 WYS-EKPDLVFCDLVSICIP---ILQAKQ--FKVLFYCHYPDQLLSK-QG-SFLKSIYRFPLNKLEEWTTC-KADKIVVN 142 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~~~~---~~~~~~--~~~v~~~h~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-~ad~ii~~ 142 (390)
.++ .+|||||++++..... ..++.+ .++|.++|.....+.. .. .....+ +.+.+.+++.+ .+|.++++
T Consensus 111 ~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~~~g~~~~~---l~~~~~~~~~r~~~d~vi~p 187 (462)
T PLN02846 111 TIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKREKNGRVKAF---LLKYINSWVVDIYCHKVIRL 187 (462)
T ss_pred HHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHhccchHHHH---HHHHHHHHHHHHhcCEEEcc
Confidence 444 9999999999654333 233332 5577788972211111 00 011111 12222233322 38999999
Q ss_pred cHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCC--CeEEEEeecccccCCHHHHHHHHHHHH
Q psy12587 143 SEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKE--DIVFLSINRYERKKNLELAIYSLNSLR 220 (390)
Q Consensus 143 s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~i~~~g~~~~~K~~~~ll~a~~~l~ 220 (390)
|....+ +.+ .+...++|+|.+.|.+.... .++... + ++ .+.++|+||+.++||++.++++++.+.
T Consensus 188 S~~~~~-l~~--------~~i~~v~GVd~~~f~~~~~~-~~~~~~--~-~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~ 254 (462)
T PLN02846 188 SAATQD-YPR--------SIICNVHGVNPKFLEIGKLK-LEQQKN--G-EQAFTKGAYYIGKMVWSKGYKELLKLLHKHQ 254 (462)
T ss_pred CHHHHH-Hhh--------CEEecCceechhhcCCCccc-HhhhcC--C-CCCcceEEEEEecCcccCCHHHHHHHHHHHH
Confidence 986654 332 23344589999988765432 222221 2 23 346899999999999999999999998
Q ss_pred hhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccH
Q psy12587 221 SRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVP 300 (390)
Q Consensus 221 ~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~ 300 (390)
+..++ ++|+|+|+|+.. +++++.++++++...+ |.|..+.+ ++++.+|+||+||..|++|+++
T Consensus 255 ~~~~~-----~~l~ivGdGp~~--------~~L~~~a~~l~l~~~v-f~G~~~~~---~~~~~~DvFv~pS~~Et~g~v~ 317 (462)
T PLN02846 255 KELSG-----LEVDLYGSGEDS--------DEVKAAAEKLELDVRV-YPGRDHAD---PLFHDYKVFLNPSTTDVVCTTT 317 (462)
T ss_pred hhCCC-----eEEEEECCCccH--------HHHHHHHHhcCCcEEE-ECCCCCHH---HHHHhCCEEEECCCcccchHHH
Confidence 87775 999999999987 8999999999886444 77865444 6999999999999999999999
Q ss_pred HhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy12587 301 IEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTI 380 (390)
Q Consensus 301 ~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
+||||||+|||+++.++ .+++.++.+|+.++ |.+++++++..+++++. ..++..+ .+.|||+..++++.+.
T Consensus 318 lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~-~~~~~a~ai~~~l~~~~---~~~~~~a----~~~~SWe~~~~~l~~~ 388 (462)
T PLN02846 318 AEALAMGKIVVCANHPS-NEFFKQFPNCRTYD-DGKGFVRATLKALAEEP---APLTDAQ----RHELSWEAATERFLRV 388 (462)
T ss_pred HHHHHcCCcEEEecCCC-cceeecCCceEecC-CHHHHHHHHHHHHccCc---hhHHHHH----HHhCCHHHHHHHHHHH
Confidence 99999999999999987 59999999999997 89999999999998653 1222222 2599999999999999
Q ss_pred HH
Q psy12587 381 VN 382 (390)
Q Consensus 381 ~~ 382 (390)
++
T Consensus 389 ~~ 390 (462)
T PLN02846 389 AD 390 (462)
T ss_pred hc
Confidence 86
No 61
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=3.1e-36 Score=270.16 Aligned_cols=257 Identities=27% Similarity=0.411 Sum_probs=200.1
Q ss_pred cCCCEEEEcccccchhHHHhhcccEEEEeecCCccccch-------hhh-h---hhhcccchhhHHHHHhcCcceEEEcc
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQFKVLFYCHYPDQLLSKQ-------GSF-L---KSIYRFPLNKLEEWTTCKADKIVVNS 143 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~-------~~~-~---~~~~~~~~~~~~~~~~~~ad~ii~~s 143 (390)
.++|+|++++......+....+.|.++++|.+..+.... ... . .......+..+++..++++|.++++|
T Consensus 82 ~~~D~v~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S 161 (351)
T cd03804 82 SGYDLVISSSHAVAKGVITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSAARVDYFIANS 161 (351)
T ss_pred cCCCEEEEcCcHHhccccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 899999998764444333334489999999753221110 000 0 01122334556677789999999999
Q ss_pred HhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhc
Q psy12587 144 EFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRL 223 (390)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~ 223 (390)
+.+++.+.+.++ .+..+++||+|.+.+.+.. .....++++|++.+.||++.+++|++.+.
T Consensus 162 ~~~~~~~~~~~~----~~~~vi~~~~d~~~~~~~~-------------~~~~~il~~G~~~~~K~~~~li~a~~~~~--- 221 (351)
T cd03804 162 RFVARRIKKYYG----RDATVIYPPVDTDRFTPAE-------------EKEDYYLSVGRLVPYKRIDLAIEAFNKLG--- 221 (351)
T ss_pred HHHHHHHHHHhC----CCcEEECCCCCHhhcCcCC-------------CCCCEEEEEEcCccccChHHHHHHHHHCC---
Confidence 999999988654 4678999999988776432 13345799999999999999999998762
Q ss_pred ccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhh
Q psy12587 224 SDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEA 303 (390)
Q Consensus 224 ~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea 303 (390)
++|+|+|+++.. +++++ +..++|.|+|+++++++.++|+.||++++||. |++|++++||
T Consensus 222 -------~~l~ivG~g~~~--------~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Ea 280 (351)
T cd03804 222 -------KRLVVIGDGPEL--------DRLRA-----KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEA 280 (351)
T ss_pred -------CcEEEEECChhH--------HHHHh-----hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHH
Confidence 579999998653 44444 34689999999999999999999999999999 9999999999
Q ss_pred hhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy12587 304 MFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQL 377 (390)
Q Consensus 304 ~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (390)
|+||+|||+++.++..|++.++.+|+++++ |+++++++|.++++++++.++.+ ++.+ ++|+|+.+.+++
T Consensus 281 ma~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~----~~~~-~~~~~~~~~~~~ 350 (351)
T cd03804 281 MASGTPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKNEDFDPQAI----RAHA-ERFSESRFREKI 350 (351)
T ss_pred HHcCCCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHH----HHHH-HhcCHHHHHHHh
Confidence 999999999999999999999999999988 99999999999999883134444 4444 579999888765
No 62
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=1.4e-34 Score=252.85 Aligned_cols=237 Identities=16% Similarity=0.154 Sum_probs=187.0
Q ss_pred ccEEEEeecCCccccchhhhhhhhcccchhhHHHHH-hcCcceEEEccHhHHHHHHHHhccCC-CCceeecCCCCCCCCC
Q psy12587 97 FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWT-TCKADKIVVNSEFTKSVVQATFRSLD-HKCLDILYPSVYTEGL 174 (390)
Q Consensus 97 ~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ad~ii~~s~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~ 174 (390)
+|+++++|+.+ .+...++.++ .+++|.++++|+.+++.+.+.. .+ .+++.+||||+|.+.|
T Consensus 70 ~~~v~e~~~~~---------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g--~~~~~~i~vIpNGVd~~~f 132 (331)
T PHA01630 70 KNIVFEVADTD---------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTSG--LKIPQPIYVIPHNLNPRMF 132 (331)
T ss_pred CceEEEEEeec---------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHcC--CCCCCCEEEECCCCCHHHc
Confidence 79999999722 1223444555 6889999999999999988752 22 4689999999998877
Q ss_pred CCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHH
Q psy12587 175 EKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELG 254 (390)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~ 254 (390)
.+... ....++++++.|++.+.||++.+++|++.+.++.++ ++++++|++... ..+
T Consensus 133 ~~~~~----------~~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~-----~~llivG~~~~~--------~~l- 188 (331)
T PHA01630 133 EYKPK----------EKPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYD-----FYFLIKSSNMLD--------PRL- 188 (331)
T ss_pred CCCcc----------ccCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCC-----EEEEEEeCcccc--------hhh-
Confidence 64321 112556777888999999999999999999887775 999999965432 211
Q ss_pred HHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeee---
Q psy12587 255 VLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLC--- 331 (390)
Q Consensus 255 ~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~--- 331 (390)
.++. .+.+.++.+++..+|+.||++++||..|+||++++||||||+|||+|+.+|.+|++.++.+|+++
T Consensus 189 -----~~~~---~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~ 260 (331)
T PHA01630 189 -----FGLN---GVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSG 260 (331)
T ss_pred -----cccc---ceeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeec
Confidence 1221 13567999999999999999999999999999999999999999999999999999998776665
Q ss_pred -----------------cCCHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 332 -----------------ESNEEAFAKAMKKIVDND--GNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 332 -----------------~~~~~~l~~~i~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
++|.+++++++.+++.++ + .++++..++...+.++|||+.+++++.++|++
T Consensus 261 ~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~-~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 261 RKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPE-KKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 347788999999999875 5 44555455555556999999999999999975
No 63
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=100.00 E-value=2.4e-34 Score=260.17 Aligned_cols=271 Identities=21% Similarity=0.274 Sum_probs=217.3
Q ss_pred cCCCEEEEcccccchh-HHHhhc-ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 75 EKPDLVFCDLVSICIP-ILQAKQ-FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~-~~~~~~-~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
.++|+++++....... +..... .+.++++|+......... .....+...... ...++++|.+++.|+..++.+.+
T Consensus 98 ~~~diii~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~d~ii~~s~~~~~~l~~ 174 (372)
T cd04949 98 TKPDVFILDRPTLDGQALLNMKKAAKVVVVLHSNHVSDNNDP--VHSLINNFYEYV-FENLDKVDGVIVATEQQKQDLQK 174 (372)
T ss_pred CCCCEEEECCccccchhHHhccCCceEEEEEChHHhCCcccc--cccccchhhHHH-HhChhhCCEEEEccHHHHHHHHH
Confidence 7899999998654443 333333 678889996443221110 011111111111 12357899999999999999998
Q ss_pred HhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceE
Q psy12587 153 TFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVK 232 (390)
Q Consensus 153 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~ 232 (390)
.++. ..++.++|||++...+.+... ....+..++++||+.+.||++.+++++..+.++.|+ ++
T Consensus 175 ~~~~--~~~v~~ip~g~~~~~~~~~~~----------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~-----~~ 237 (372)
T cd04949 175 QFGN--YNPIYTIPVGSIDPLKLPAQF----------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPD-----AT 237 (372)
T ss_pred HhCC--CCceEEEcccccChhhcccch----------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCC-----cE
Confidence 8763 245899999998876654310 112556889999999999999999999999998886 99
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
|+|+|.++.. ..++..+++++++++|.+.|+.+ ++.++|+.||++++||..||+|++++|||++|+|||+
T Consensus 238 l~i~G~g~~~--------~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~ 307 (372)
T cd04949 238 LDIYGYGDEE--------EKLKELIEELGLEDYVFLKGYTR--DLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVIS 307 (372)
T ss_pred EEEEEeCchH--------HHHHHHHHHcCCcceEEEcCCCC--CHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEE
Confidence 9999998765 77888888999999999999654 4689999999999999999999999999999999999
Q ss_pred ecCC-CcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy12587 313 VNSG-GPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQL 377 (390)
Q Consensus 313 ~~~~-~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (390)
++.+ |..+++.++.+|+++++ |+++++++|.+++++++ .++++++++++.+ ++|+|+.++++|
T Consensus 308 ~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~-~~~~~~~~a~~~~-~~~s~~~~~~~w 372 (372)
T cd04949 308 YDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPK-LLQKFSEAAYENA-ERYSEENVWEKW 372 (372)
T ss_pred ecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHH-HHHHHHHHHHHHH-HHhhHHHHHhcC
Confidence 9987 88999999999999999 99999999999999998 9999999999995 899999998865
No 64
>KOG0853|consensus
Probab=100.00 E-value=2.3e-33 Score=246.53 Aligned_cols=381 Identities=39% Similarity=0.630 Sum_probs=297.5
Q ss_pred CCcchhhhHhh-Hhhhh---------cCCceeec-C-----------CccccccCCCcceEEeccccccccc--hhhHHH
Q psy12587 2 LGATARLTITA-TAWGA---------TGPRTTAH-D-----------HCFKETKDGTLPVKVIGDWLPRNIF--GKFYAL 57 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~---------~G~~V~~~-~-----------~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~ 57 (390)
+||.++-...- -.+.. .||+|.++ . .+..+...+...+.....+.|+... ......
T Consensus 46 ~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~~lP~~~~~~~~~~~~ 125 (495)
T KOG0853|consen 46 IGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGDWLPRAMGQFLEQVAG 125 (495)
T ss_pred cCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEeecCcccchhhhhhhc
Confidence 68999988886 77777 99998877 1 1233344444677777777776652 222222
Q ss_pred HHHHHHHHHHHHHHHhh--cCCCEEEEcccccchhHHHhhc-----ccEEEEeecCCccccchhhhhhhhcccchhhHHH
Q psy12587 58 CMYLRMIVIALYVAWYS--EKPDLVFCDLVSICIPILQAKQ-----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEE 130 (390)
Q Consensus 58 ~~~~~~~~~~~~~~~~~--~~~Dvi~~~~~~~~~~~~~~~~-----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (390)
..+.+.+...... +.+ .+.|+|+......+.++.+..+ .++.+++|.++..........+.+++..+.+++.
T Consensus 126 ~~~~~il~~~~~~-~~k~~~~~d~~i~d~~~~~~~l~~~~~~p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~ 204 (495)
T KOG0853|consen 126 CAYLRILRIPFGI-LFKWAEKVDPIIEDFVSACVPLLKQLSGPDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEE 204 (495)
T ss_pred cceeEEEEeccch-hhhhhhhhceeecchHHHHHHHHHHhcCCcccceeEEeccchHHHhccccCccceeehhhhhhhhh
Confidence 2222222221111 122 6789999888766777666655 7888999998888777777888899999999999
Q ss_pred HHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCC-------ccchhhhcCCCCCCCCeEEEEeecc
Q psy12587 131 WTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTT-------PEPIENVLNPLPGKEDIVFLSINRY 203 (390)
Q Consensus 131 ~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~i~~~g~~ 203 (390)
.....++.+++.|...+..+...+..+...++.+.+.++|.+.+.+.. ....+...+ -.+....+..+.++
T Consensus 205 e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~--v~~~d~~~~siN~~ 282 (495)
T KOG0853|consen 205 ETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRG--VSGIDRFFPSINRF 282 (495)
T ss_pred hhhhccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeee--ecccceEeeeeeec
Confidence 999999999999999999999988877666789999999877655311 111111111 12236677888999
Q ss_pred cccCCHHHHHHHHHHHHhhcccccccceEEEEEc--CCCCCCcchhHHHHHHHHHHHHcCC-CCcEEEecCCChHHHHHH
Q psy12587 204 ERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAG--GYDPHNIENVEYYKELGVLVKKLKL-SDNVLFLTSPSDAAKISL 280 (390)
Q Consensus 204 ~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G--~~~~~~~~~~~y~~~~~~~~~~~~l-~~~v~~~g~~~~~e~~~~ 280 (390)
.+.|+++.+++++..+....++......++.++| +.+....++..|++++.++++++++ .+.|.|+...++.+...+
T Consensus 283 ~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl 362 (495)
T KOG0853|consen 283 EPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRL 362 (495)
T ss_pred CCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHH
Confidence 9999999999999999888854334468899999 5566677888999999999999998 477778788888887788
Q ss_pred HHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHH---HHHHHHHHHhcCChhHHHHHH
Q psy12587 281 FKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEE---AFAKAMKKIVDNDGNIIQQFS 357 (390)
Q Consensus 281 ~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~---~l~~~i~~l~~~~~~~~~~~~ 357 (390)
++.+.+.+.....|.||++++|||+||+|||+++.||..|++.++.+|++++++.+ .+++++.++.+|++ .+.+|+
T Consensus 363 ~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~-l~~~~~ 441 (495)
T KOG0853|consen 363 AADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPE-LWARMG 441 (495)
T ss_pred HHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHH-HHHHHH
Confidence 88888776655569999999999999999999999999999999999999998555 69999999999999 999999
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 358 QFGFNRFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
+++++.+.+.|+|..+.+++.++..+...
T Consensus 442 ~~G~~rV~e~fs~~~~~~ri~~~~~~~~~ 470 (495)
T KOG0853|consen 442 KNGLKRVKEMFSWQHYSERIASVLGKYLQ 470 (495)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHhcCC
Confidence 99999998889999999999998876543
No 65
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1.8e-32 Score=248.53 Aligned_cols=267 Identities=15% Similarity=0.094 Sum_probs=194.1
Q ss_pred cCCCEEEEccccc-chh--HHHhhc--ccEEEEeecCCccccc-h-hhhhhhhcccchhhHHHHHhcC-cceEEEccHhH
Q psy12587 75 EKPDLVFCDLVSI-CIP--ILQAKQ--FKVLFYCHYPDQLLSK-Q-GSFLKSIYRFPLNKLEEWTTCK-ADKIVVNSEFT 146 (390)
Q Consensus 75 ~~~Dvi~~~~~~~-~~~--~~~~~~--~~~v~~~h~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-ad~ii~~s~~~ 146 (390)
++|||||++++.. ++. +.++++ .|+|.++|.....+.. . ......+ +.+.+..++.+. ||.++++|..+
T Consensus 433 f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~---llk~l~~~v~r~hcD~VIaPS~at 509 (794)
T PLN02501 433 KDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAF---FVKHINNWVTRAYCHKVLRLSAAT 509 (794)
T ss_pred cCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHH---HHHHHHHHHHHhhCCEEEcCCHHH
Confidence 8999999999532 333 222222 4899899964332111 1 1112221 111222222221 89999999777
Q ss_pred HHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccc
Q psy12587 147 KSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDE 226 (390)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~ 226 (390)
.+ + + ...+. ..||||.+.|.+.........++ ++. ....++|+||+.+.||++.+++|++.+.++.++
T Consensus 510 q~-L----~---~~vI~-nVnGVDte~F~P~~r~~~~r~lg-i~~-~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pn- 577 (794)
T PLN02501 510 QD-L----P---KSVIC-NVHGVNPKFLKIGEKVAEERELG-QQA-FSKGAYFLGKMVWAKGYRELIDLLAKHKNELDG- 577 (794)
T ss_pred HH-h----c---cccee-ecccccccccCCcchhHHHHhcC-Ccc-ccCceEEEEcccccCCHHHHHHHHHHHHhhCCC-
Confidence 63 2 1 12222 22799999998765433333332 111 234578999999999999999999999887774
Q ss_pred cccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhc
Q psy12587 227 MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFC 306 (390)
Q Consensus 227 ~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~ 306 (390)
++|+|+|+|+.. ++++++++++++ +|.|+|..++. ..+|+.+|++++||..|+||++++|||||
T Consensus 578 ----vrLvIVGDGP~r--------eeLe~la~eLgL--~V~FLG~~dd~--~~lyasaDVFVlPS~sEgFGlVlLEAMA~ 641 (794)
T PLN02501 578 ----FNLDVFGNGEDA--------HEVQRAAKRLDL--NLNFLKGRDHA--DDSLHGYKVFINPSISDVLCTATAEALAM 641 (794)
T ss_pred ----eEEEEEcCCccH--------HHHHHHHHHcCC--EEEecCCCCCH--HHHHHhCCEEEECCCcccchHHHHHHHHc
Confidence 999999999886 889999999887 48999988766 47999999999999999999999999999
Q ss_pred CCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy12587 307 KRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 307 G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
|+|||+++.++. +++.++.+|+++. |+++++++|.++++++. .+..+.. ...+||+..++++++.-
T Consensus 642 GlPVVATd~pG~-e~V~~g~nGll~~-D~EafAeAI~~LLsd~~-~rl~~~a------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 642 GKFVVCADHPSN-EFFRSFPNCLTYK-TSEDFVAKVKEALANEP-QPLTPEQ------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred CCCEEEecCCCC-ceEeecCCeEecC-CHHHHHHHHHHHHhCch-hhhHHHH------HhhCCHHHHHHHHHHhh
Confidence 999999999875 4577777888765 99999999999999887 5433321 24899999999998864
No 66
>PHA01633 putative glycosyl transferase group 1
Probab=100.00 E-value=1.6e-30 Score=224.09 Aligned_cols=241 Identities=16% Similarity=0.193 Sum_probs=181.4
Q ss_pred ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCC
Q psy12587 97 FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEK 176 (390)
Q Consensus 97 ~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 176 (390)
++++.++|+.... ....++.. +.+.+|++|+.+++.+.+. +.+ .. .++++|+|.+.|.+
T Consensus 71 ~~~~tt~~g~~~~----------------~~y~~~m~-~~~~vIavS~~t~~~L~~~--G~~-~~-i~I~~GVD~~~f~p 129 (335)
T PHA01633 71 KYFYTTCDGIPNI----------------EIVNKYLL-QDVKFIPNSKFSAENLQEV--GLQ-VD-LPVFHGINFKIVEN 129 (335)
T ss_pred CceEEeeCCcCch----------------HHHHHHHh-cCCEEEeCCHHHHHHHHHh--CCC-Cc-eeeeCCCChhhcCc
Confidence 7888888875321 12223333 4568999999999999875 332 23 35789999988876
Q ss_pred CCc--cchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHH
Q psy12587 177 TTP--EPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELG 254 (390)
Q Consensus 177 ~~~--~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~ 254 (390)
... ...++.++ ....+.++++++||+.++||++.+++|++.+.++.++ ...+++++++|. ..
T Consensus 130 ~~~~~~~~r~~~~-~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~-~~~~i~l~ivG~------------~~-- 193 (335)
T PHA01633 130 AEKLVPQLKQKLD-KDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPD-IAKKIHFFVISH------------KQ-- 193 (335)
T ss_pred cchhhHHHHHHhC-cCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCC-ccccEEEEEEcH------------HH--
Confidence 432 23444432 1113567899999999999999999999999887653 001257777773 22
Q ss_pred HHHHHcCCCCcEEEe---cCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceec-------
Q psy12587 255 VLVKKLKLSDNVLFL---TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD------- 324 (390)
Q Consensus 255 ~~~~~~~l~~~v~~~---g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~------- 324 (390)
.++++++++|.|. |+++.+++.++|+.||++++||..|+||++++|||+||+|||+++.++++|+..+
T Consensus 194 --~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~ 271 (335)
T PHA01633 194 --FTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIK 271 (335)
T ss_pred --HHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeC
Confidence 2456678899998 5668899999999999999999999999999999999999999999998886441
Q ss_pred -----------CcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy12587 325 -----------GRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNT 379 (390)
Q Consensus 325 -----------~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
...|+.++. |+++++++|.++++..+ +...+.++++.+ ++|+|+.++++|++
T Consensus 272 ~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~--~~~~~~~~~~~a-~~f~~~~~~~~~~~ 335 (335)
T PHA01633 272 SSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQD--REERSMKLKELA-KKYDIRNLYTRFLE 335 (335)
T ss_pred CCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhccC--hhhhhHHHHHHH-HhcCHHHHHHHhhC
Confidence 234678888 99999999999966543 333466777776 89999999999864
No 67
>KOG1387|consensus
Probab=99.97 E-value=1.1e-28 Score=202.40 Aligned_cols=370 Identities=21% Similarity=0.276 Sum_probs=271.8
Q ss_pred CCcchhhhHhh-HhhhhcCCc-e-eec-CCc---------------cccccCCCcceEEec--cccccccchhhHHHHHH
Q psy12587 2 LGATARLTITA-TAWGATGPR-T-TAH-DHC---------------FKETKDGTLPVKVIG--DWLPRNIFGKFYALCMY 60 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~-V-~~~-~~~---------------~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~ 60 (390)
.||.||++..- +.+.+.--+ + .++ ++. ..+....++...++. .++....++.+..+.+.
T Consensus 56 GGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVea~~~~hfTllgQa 135 (465)
T KOG1387|consen 56 GGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVEASTWKHFTLLGQA 135 (465)
T ss_pred CCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeeecccccceehHHHH
Confidence 58999998888 887765333 3 333 221 011222333333332 33444555666666666
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEcc-cccchhHHH-hhcccEEEEeecCCccccchhh-----------hhhhhcccchhh
Q psy12587 61 LRMIVIALYVAWYSEKPDLVFCDL-VSICIPILQ-AKQFKVLFYCHYPDQLLSKQGS-----------FLKSIYRFPLNK 127 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~~Dvi~~~~-~~~~~~~~~-~~~~~~v~~~h~~~~~~~~~~~-----------~~~~~~~~~~~~ 127 (390)
+..+...+- ++++..||+.+-+- .++.+++.+ +.++|++.++|.|-....-... +-+-.+.+++..
T Consensus 136 igsmIl~~E-ai~r~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~ 214 (465)
T KOG1387|consen 136 IGSMILAFE-AIIRFPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFAL 214 (465)
T ss_pred HHHHHHHHH-HHHhCCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHH
Confidence 655544333 36669999988655 556677666 6669999999976543221111 112233444556
Q ss_pred HHHHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccC
Q psy12587 128 LEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKK 207 (390)
Q Consensus 128 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K 207 (390)
+...+-..||.+++.|.++.+.+.+.++ ..++++++++++.+.+...... ..++.+.++++|.++|+|
T Consensus 215 lY~~~G~~ad~vm~NssWT~nHI~qiW~---~~~~~iVyPPC~~e~lks~~~t---------e~~r~~~ll~l~Q~RPEK 282 (465)
T KOG1387|consen 215 LYQSAGSKADIVMTNSSWTNNHIKQIWQ---SNTCSIVYPPCSTEDLKSKFGT---------EGERENQLLSLAQFRPEK 282 (465)
T ss_pred HHHhccccceEEEecchhhHHHHHHHhh---ccceeEEcCCCCHHHHHHHhcc---------cCCcceEEEEEeecCccc
Confidence 6777888999999999999999999987 4689999999988755433211 124678899999999999
Q ss_pred CHHHHHHHHHHHHhhccc-ccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcce
Q psy12587 208 NLELAIYSLNSLRSRLSD-EMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHC 286 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~-~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv 286 (390)
++. +++.......+.|. ....+++|.++|+.... ++.++.+.++.+++++.++++|.|.-.+|.+++..++..|.+
T Consensus 283 nH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRne--eD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i 359 (465)
T KOG1387|consen 283 NHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNE--EDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATI 359 (465)
T ss_pred ccH-HHHHHHHHHhcCchhhccCCceEEEEeccCCh--hhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhcccee
Confidence 999 55555444344332 23457999999987654 667888999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCccHHhhhhcCCCEEEecCCCc-ccceec---CcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q psy12587 287 IIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGP-KESVVD---GRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFN 362 (390)
Q Consensus 287 ~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~-~e~i~~---~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 362 (390)
.++.-..|.||+++.||||+|+-+|+.+.||. -+++.+ ..+|++.+ +.++.++++.+++....+.+..|+++|+.
T Consensus 360 Gvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~-t~~EYaE~iLkIv~~~~~~r~~~r~~AR~ 438 (465)
T KOG1387|consen 360 GVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP-TDEEYAEAILKIVKLNYDERNMMRRNARK 438 (465)
T ss_pred ehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC-ChHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999888664 455543 33789887 89999999999988665368899999998
Q ss_pred HHhhhcCHHHHHHHHHHHHHhhhhhcC
Q psy12587 363 RFNEKFSFQAFSIQLNTIVNNMLDKKT 389 (390)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (390)
.+ .+|+-..+-+.|...+.+++.+..
T Consensus 439 s~-~RFsE~~F~kd~~~~i~kll~e~~ 464 (465)
T KOG1387|consen 439 SL-ARFGELKFDKDWENPICKLLEEEE 464 (465)
T ss_pred HH-HHhhHHHHHHhHhHHHHHhhcccc
Confidence 87 899999999999999999887643
No 68
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.97 E-value=1.8e-29 Score=231.10 Aligned_cols=291 Identities=13% Similarity=0.123 Sum_probs=207.6
Q ss_pred cCCCEEEEcccccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
...|+|++|++...+....+.+ .|+++++|-+.+.... +..+ .....+.+. +-.+|.|.+.+......+
T Consensus 130 ~~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~HipfP~~e~----~~~l--p~~~~ll~~-~l~~D~igF~t~~~~~~F 202 (460)
T cd03788 130 RPGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIPFPSSEI----FRCL--PWREELLRG-LLGADLIGFQTERYARNF 202 (460)
T ss_pred CCCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCCCCChHH----HhhC--CChHHHHHH-HhcCCEEEECCHHHHHHH
Confidence 5679999999765443333322 7899999976432111 1100 001122222 334899999997665555
Q ss_pred HHHh----------------ccCCCCceeecCCCCCCCCCCCCCcc-ch----hhhcCCCCCCCCeEEEEeecccccCCH
Q psy12587 151 QATF----------------RSLDHKCLDILYPSVYTEGLEKTTPE-PI----ENVLNPLPGKEDIVFLSINRYERKKNL 209 (390)
Q Consensus 151 ~~~~----------------~~~~~~~~~vi~~~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~i~~~g~~~~~K~~ 209 (390)
.+.. .+. ..++.++|||+|.+.|.+.... .. ++..+ ...+.++|+++||+.+.||+
T Consensus 203 l~~~~~~l~~~~~~~~~i~~~g~-~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~il~vgRl~~~Kgi 279 (460)
T cd03788 203 LSCCSRLLGLEVTDDGGVEYGGR-RVRVGAFPIGIDPDAFRKLAASPEVQERAAELRE--RLGGRKLIVGVDRLDYSKGI 279 (460)
T ss_pred HHHHHHHcCCcccCCceEEECCE-EEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHH--hcCCCEEEEEecCccccCCH
Confidence 5421 111 2468999999999887653221 11 11111 12367889999999999999
Q ss_pred HHHHHHHHHHHhhcccccccceEEEEEcCCCC-CCcchhHHHHHHHHHHHHcCC-------CCcEEEecCCChHHHHHHH
Q psy12587 210 ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDP-HNIENVEYYKELGVLVKKLKL-------SDNVLFLTSPSDAAKISLF 281 (390)
Q Consensus 210 ~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~-~~~~~~~y~~~~~~~~~~~~l-------~~~v~~~g~~~~~e~~~~~ 281 (390)
+.+++|++.+.+++|+ ...++.|+++|.+.. ..+....+.+++++++.+.+. .+.+.+.|.++.+++..+|
T Consensus 280 ~~ll~A~~~ll~~~p~-~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y 358 (460)
T cd03788 280 PERLLAFERLLERYPE-WRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALY 358 (460)
T ss_pred HHHHHHHHHHHHhChh-hcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHH
Confidence 9999999999887773 111367888876532 122334555666666655432 2333456889999999999
Q ss_pred HhcceEEeCCCCCCCCccHHhhhhcCCC----EEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHH
Q psy12587 282 KFCHCIIYTPSNEHFGIVPIEAMFCKRP----VIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQF 356 (390)
Q Consensus 282 ~~adv~v~ps~~e~~~~~~~Ea~a~G~p----vi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~ 356 (390)
+.||++++||..||+|++++|||+||+| ||+|+.+|..+. +.+|+++++ |+++++++|.++++++.++++.+
T Consensus 359 ~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~ 435 (460)
T cd03788 359 RAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTMPLEERRER 435 (460)
T ss_pred HhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999 999998888776 467999999 99999999999999886478888
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHH
Q psy12587 357 SQFGFNRFNEKFSFQAFSIQLNTI 380 (390)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
.+++++.+ ++|+++.+++++++-
T Consensus 436 ~~~~~~~v-~~~~~~~w~~~~l~~ 458 (460)
T cd03788 436 HRKLREYV-RTHDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHh
Confidence 88888887 789999999998764
No 69
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.97 E-value=2e-29 Score=226.31 Aligned_cols=323 Identities=11% Similarity=0.008 Sum_probs=222.6
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCc----cccccCCCcceEEeccccc--cccchhhHHHHHHHHHHHHHHHHHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHC----FKETKDGTLPVKVIGDWLP--RNIFGKFYALCMYLRMIVIALYVAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~----~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
.||.++++.+| ++|.++||+|++++.. .......++.+..++.... ......+.....++..+.. ...+++
T Consensus 11 ~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~ik 88 (357)
T PRK00726 11 TGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVLQ--ARKILK 88 (357)
T ss_pred chHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHHH--HHHHHH
Confidence 58899999999 9999999999888221 1122224666766643211 1111222222222222111 113456
Q ss_pred -cCCCEEEEcccccchh---HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 -EKPDLVFCDLVSICIP---ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 -~~~Dvi~~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
.+||+||+|.+...+. +.+..++|+|++.|+... ....+++++.+|.+++.++...
T Consensus 89 ~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~-----------------~~~~r~~~~~~d~ii~~~~~~~--- 148 (357)
T PRK00726 89 RFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVP-----------------GLANKLLARFAKKVATAFPGAF--- 148 (357)
T ss_pred hcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCCc-----------------cHHHHHHHHHhchheECchhhh---
Confidence 8999999998543333 233445899887664211 1334666778999999887442
Q ss_pred HHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHH-HHHHHHHhhccccccc
Q psy12587 151 QATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAI-YSLNSLRSRLSDEMKT 229 (390)
Q Consensus 151 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll-~a~~~l~~~~~~~~~~ 229 (390)
.+ .+..+++++|||++.+.+.+.. .+..++ ++ .+.++++++|+....++...++ +|++++.+. +
T Consensus 149 ~~----~~~~~i~vi~n~v~~~~~~~~~---~~~~~~-~~-~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~----- 213 (357)
T PRK00726 149 PE----FFKPKAVVTGNPVREEILALAA---PPARLA-GR-EGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L----- 213 (357)
T ss_pred hc----cCCCCEEEECCCCChHhhcccc---hhhhcc-CC-CCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-----
Confidence 11 3368999999999987654322 111221 12 2566778888887777765555 888888653 2
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
..++++|.++. +.+.+..+ +++. |.+.|++ +++.++|+.||++++++ .+.+++|||++|+|
T Consensus 214 -~~~~~~G~g~~---------~~~~~~~~-~~~~--v~~~g~~--~~~~~~~~~~d~~i~~~----g~~~~~Ea~~~g~P 274 (357)
T PRK00726 214 -QVIHQTGKGDL---------EEVRAAYA-AGIN--AEVVPFI--DDMAAAYAAADLVICRA----GASTVAELAAAGLP 274 (357)
T ss_pred -EEEEEcCCCcH---------HHHHHHhh-cCCc--EEEeehH--hhHHHHHHhCCEEEECC----CHHHHHHHHHhCCC
Confidence 45778898864 55555555 7663 9999998 45689999999999866 26889999999999
Q ss_pred EEEecCCC--------cccceecCcceeeecC-C--HHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 310 VIAVNSGG--------PKESVVDGRTGFLCES-N--EEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 310 vi~~~~~~--------~~e~i~~~~~g~~~~~-~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
+|+++.++ ..+.+.+..+|+++++ | +++++++|.+++++++ .+++|++++++.+ +.++.+.+++.+.
T Consensus 275 vv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 352 (357)
T PRK00726 275 AILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPE-RLEAMAEAARALG-KPDAAERLADLIE 352 (357)
T ss_pred EEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHH-HHHHHHHHHHhcC-CcCHHHHHHHHHH
Confidence 99987642 1255667778999987 6 9999999999999988 9999999999886 8899999999988
Q ss_pred HHHH
Q psy12587 379 TIVN 382 (390)
Q Consensus 379 ~~~~ 382 (390)
++++
T Consensus 353 ~~~~ 356 (357)
T PRK00726 353 ELAR 356 (357)
T ss_pred HHhh
Confidence 8765
No 70
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.97 E-value=9.4e-29 Score=222.10 Aligned_cols=305 Identities=15% Similarity=0.151 Sum_probs=199.6
Q ss_pred cCCCEEEEcccccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhc--------------cc--chhhHHHHHhc
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIY--------------RF--PLNKLEEWTTC 134 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~ 134 (390)
.++||+|+|.|..+..+..+++ +|+|+|.|.......-.... ..++ +. -...+|+.+..
T Consensus 147 ~~~dViH~HeWm~g~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g~-~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~aa~ 225 (590)
T cd03793 147 EPAVVAHFHEWQAGVGLPLLRKRKVDVSTIFTTHATLLGRYLCAGN-VDFYNNLDYFDVDKEAGKRGIYHRYCIERAAAH 225 (590)
T ss_pred CCCeEEEEcchhHhHHHHHHHHhCCCCCEEEEecccccccccccCC-cccchhhhhcchhhhhhcccchHHHHHHHHHHh
Confidence 5899999999988777666652 88999999654322101110 1111 11 12247899999
Q ss_pred CcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCcc------------c-----hhhhcCCCCCCCCeEE
Q psy12587 135 KADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPE------------P-----IENVLNPLPGKEDIVF 197 (390)
Q Consensus 135 ~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~------------~-----~~~~~~~l~~~~~~~i 197 (390)
.||.++++|+.++..+...|+.. +++ |+|||+|...|...... . ++..++ ++. ++.++
T Consensus 226 ~Ad~fttVS~it~~E~~~Ll~~~-pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~-~~~-d~tli 300 (590)
T cd03793 226 CAHVFTTVSEITAYEAEHLLKRK-PDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYD-FDL-DKTLY 300 (590)
T ss_pred hCCEEEECChHHHHHHHHHhCCC-CCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcC-CCC-CCeEE
Confidence 99999999999999999998743 334 99999999998765410 1 122222 222 44555
Q ss_pred EE-eecccc-cCCHHHHHHHHHHHHhhcccc--cccceEEEEEcCCCCC----CcchhHHHHHHHHH-------------
Q psy12587 198 LS-INRYER-KKNLELAIYSLNSLRSRLSDE--MKTHVKLVVAGGYDPH----NIENVEYYKELGVL------------- 256 (390)
Q Consensus 198 ~~-~g~~~~-~K~~~~ll~a~~~l~~~~~~~--~~~~~~l~i~G~~~~~----~~~~~~y~~~~~~~------------- 256 (390)
+| +||+.. +||++.+|+|+.++....... ...=+-|+++-..... ...++...+++++.
T Consensus 301 ~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~ 380 (590)
T cd03793 301 FFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLF 380 (590)
T ss_pred EEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhh
Confidence 55 799987 999999999999886632210 0011344544443211 00111211222221
Q ss_pred ------------------------------------------------------HHHcCCC----Cc--EEEecC-CC--
Q psy12587 257 ------------------------------------------------------VKKLKLS----DN--VLFLTS-PS-- 273 (390)
Q Consensus 257 ------------------------------------------------------~~~~~l~----~~--v~~~g~-~~-- 273 (390)
++++++. ++ |.|++. ++
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~ 460 (590)
T cd03793 381 EAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSST 460 (590)
T ss_pred hHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCC
Confidence 1222221 22 334332 21
Q ss_pred ----hHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCc----ccceecC-cceeeec-------C-CHH
Q psy12587 274 ----DAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGP----KESVVDG-RTGFLCE-------S-NEE 336 (390)
Q Consensus 274 ----~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~----~e~i~~~-~~g~~~~-------~-~~~ 336 (390)
..+..++++.||++++||.+|+||++++|||+||+|||+|+.+|+ .|.+.++ ..|+.+. + +.+
T Consensus 461 ~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~ 540 (590)
T cd03793 461 NPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQ 540 (590)
T ss_pred CCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHH
Confidence 234568999999999999999999999999999999999999988 4555444 3566665 3 678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH-HHHhhhcCHHHHHHHHHHHHHhhhhh
Q psy12587 337 AFAKAMKKIVDNDGNIIQQFSQFGF-NRFNEKFSFQAFSIQLNTIVNNMLDK 387 (390)
Q Consensus 337 ~l~~~i~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
+++++|.++++. + .++++..++. +...+.|+|+..++.|.+.++.++++
T Consensus 541 ~La~~m~~~~~~-~-~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~~ 590 (590)
T cd03793 541 QLTQYMYEFCQL-S-RRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALSR 590 (590)
T ss_pred HHHHHHHHHhCC-c-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhC
Confidence 888999998854 4 5565555543 23348999999999999999887753
No 71
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.97 E-value=1.5e-28 Score=222.97 Aligned_cols=291 Identities=11% Similarity=0.125 Sum_probs=206.7
Q ss_pred cCCCEEEEcccccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
..-|+|++|+....+....++. .++.++.|-|.+.... ++.+- .+.-.-..+-.||.|-+.+...++.+
T Consensus 126 ~~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHipfP~~e~----f~~lp---~r~~il~gll~~dligF~t~~~~~~F 198 (456)
T TIGR02400 126 QPGDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPSSEI----YRTLP---WRRELLEGLLAYDLVGFQTYDDARNF 198 (456)
T ss_pred CCCCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCCCCChHH----HhhCC---cHHHHHHHHhcCCEEEECCHHHHHHH
Confidence 4558999999876554443333 6888889965432111 11110 11111233557899999999888877
Q ss_pred HHHhcc--------------CCCCceeecCCCCCCCCCCCCCcc--------chhhhcCCCCCCCCeEEEEeecccccCC
Q psy12587 151 QATFRS--------------LDHKCLDILYPSVYTEGLEKTTPE--------PIENVLNPLPGKEDIVFLSINRYERKKN 208 (390)
Q Consensus 151 ~~~~~~--------------~~~~~~~vi~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~i~~~g~~~~~K~ 208 (390)
.+.... -...++.++|||+|++.|.+.... .+++.+ .++++|+++||+.+.||
T Consensus 199 l~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~-----~~~~vIl~VgRLd~~KG 273 (456)
T TIGR02400 199 LSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL-----KGRKLIIGVDRLDYSKG 273 (456)
T ss_pred HHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc-----CCCeEEEEccccccccC
Confidence 763220 013568899999999988653211 123333 26678999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCC-CCCcchhHHHHHHHHHHHHc-------CCCCcEEEecCCChHHHHHH
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYD-PHNIENVEYYKELGVLVKKL-------KLSDNVLFLTSPSDAAKISL 280 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~-~~~~~~~~y~~~~~~~~~~~-------~l~~~v~~~g~~~~~e~~~~ 280 (390)
++.+++|++.+.+++|+ ...++.|+++|... ........+..++++++.+. +..+.+.+.|.++.+++..+
T Consensus 274 i~~ll~A~~~ll~~~p~-~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~al 352 (456)
T TIGR02400 274 LPERLLAFERFLEEHPE-WRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMAL 352 (456)
T ss_pred HHHHHHHHHHHHHhCcc-ccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHH
Confidence 99999999999888774 11235677775322 11111122333344333221 11233445678999999999
Q ss_pred HHhcceEEeCCCCCCCCccHHhhhhcCCC----EEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHH
Q psy12587 281 FKFCHCIIYTPSNEHFGIVPIEAMFCKRP----VIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQ 355 (390)
Q Consensus 281 ~~~adv~v~ps~~e~~~~~~~Ea~a~G~p----vi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~ 355 (390)
|+.||++++||..||||++++||||||+| +|+|+.+|..+.+. +|+++++ |+++++++|.++++++.+++++
T Consensus 353 y~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~~~~er~~ 429 (456)
T TIGR02400 353 YRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTMPLEEREE 429 (456)
T ss_pred HHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999 99999988888773 7899999 9999999999999987658888
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 356 FSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+.+.+++.+ .+||+..+++++++-+.
T Consensus 430 r~~~~~~~v-~~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 430 RHRAMMDKL-RKNDVQRWREDFLSDLN 455 (456)
T ss_pred HHHHHHHHH-hhCCHHHHHHHHHHHhh
Confidence 888899997 67999999999887553
No 72
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.97 E-value=1e-28 Score=221.53 Aligned_cols=317 Identities=12% Similarity=0.041 Sum_probs=212.6
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecC--C-cccc-ccCCCcceEEecccc--ccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHD--H-CFKE-TKDGTLPVKVIGDWL--PRNIFGKFYALCMYLRMIVIALYVAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~--~-~~~~-~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
.||.++++..+ ++|.++||+|+++. . ...+ ....++.+..++... ....+..+.....++.... ....+++
T Consensus 9 ~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~ 86 (350)
T cd03785 9 TGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVL--QARKILK 86 (350)
T ss_pred chhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHH--HHHHHHH
Confidence 58999999999 99999999998881 1 1111 122345666653211 1111122222222122111 1123455
Q ss_pred -cCCCEEEEcccccchh---HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 -EKPDLVFCDLVSICIP---ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 -~~~Dvi~~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
.+||+||+++....++ +++..++|++++.|+... ....+++++.+|.++++|+...+.
T Consensus 87 ~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~~-----------------~~~~~~~~~~~~~vi~~s~~~~~~- 148 (350)
T cd03785 87 KFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAVP-----------------GLANRLLARFADRVALSFPETAKY- 148 (350)
T ss_pred hcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCCc-----------------cHHHHHHHHhhCEEEEcchhhhhc-
Confidence 8999999998544433 233444888876554211 123455667799999999988765
Q ss_pred HHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHH-HHHHHHHHHhhccccccc
Q psy12587 151 QATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLEL-AIYSLNSLRSRLSDEMKT 229 (390)
Q Consensus 151 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~-ll~a~~~l~~~~~~~~~~ 229 (390)
++ ..++.+++||++.+.+..... ++.++ +++ +.+++++.|+....|+... +++++..+.+.
T Consensus 149 ---~~---~~~~~~i~n~v~~~~~~~~~~---~~~~~-~~~-~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~------- 210 (350)
T cd03785 149 ---FP---KDKAVVTGNPVREEILALDRE---RARLG-LRP-GKPTLLVFGGSQGARAINEAVPEALAELLRK------- 210 (350)
T ss_pred ---CC---CCcEEEECCCCchHHhhhhhh---HHhcC-CCC-CCeEEEEECCcHhHHHHHHHHHHHHHHhhcc-------
Confidence 22 578999999999876654221 33332 233 5566677776666666654 45888888632
Q ss_pred ceE-EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 230 HVK-LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 230 ~~~-l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
++. +.++|.+. . +++++.++++ .++|.+.|++ +++.++|+.||++++++ .+++++|||++|+
T Consensus 211 ~~~~~~i~G~g~-~--------~~l~~~~~~~--~~~v~~~g~~--~~~~~~l~~ad~~v~~s----g~~t~~Eam~~G~ 273 (350)
T cd03785 211 RLQVIHQTGKGD-L--------EEVKKAYEEL--GVNYEVFPFI--DDMAAAYAAADLVISRA----GASTVAELAALGL 273 (350)
T ss_pred CeEEEEEcCCcc-H--------HHHHHHHhcc--CCCeEEeehh--hhHHHHHHhcCEEEECC----CHhHHHHHHHhCC
Confidence 255 45778773 2 6777777766 4789999998 56689999999999865 2688999999999
Q ss_pred CEEEecCCC--------cccceecCcceeeecC---CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHH
Q psy12587 309 PVIAVNSGG--------PKESVVDGRTGFLCES---NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSI 375 (390)
Q Consensus 309 pvi~~~~~~--------~~e~i~~~~~g~~~~~---~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (390)
|+|+++.++ ..+.+.+..+|++++. |+++++++|.+++++++ .+++|++++++.+ +.+..+++++
T Consensus 274 Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~~~~~~-~~~~~~~i~~ 349 (350)
T cd03785 274 PAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPE-RLKAMAEAARSLA-RPDAAERIAD 349 (350)
T ss_pred CEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHhcC-CCCHHHHHHh
Confidence 999987643 2355666778999874 79999999999999888 9999999999887 5677666653
No 73
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=5.3e-28 Score=217.54 Aligned_cols=265 Identities=14% Similarity=0.064 Sum_probs=183.4
Q ss_pred cCCCEEEEcccccchhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHh
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATF 154 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~ 154 (390)
.+..+++++.+.+...+....+.++|+++++........ ... ....++.++++||.|+++|+...+.+.+.
T Consensus 101 ~~~~i~~~~~P~~~~~~~~~~~~~~Vyd~~D~~~~~~~~---~~~-----~~~~e~~~~~~ad~vi~~S~~l~~~~~~~- 171 (373)
T cd04950 101 FGRPILWYYTPYTLPVAALLQASLVVYDCVDDLSAFPGG---PPE-----LLEAERRLLKRADLVFTTSPSLYEAKRRL- 171 (373)
T ss_pred CCCcEEEEeCccHHHHHhhcCCCeEEEEcccchhccCCC---CHH-----HHHHHHHHHHhCCEEEECCHHHHHHHhhC-
Confidence 555666666554444444444589999998743221111 111 11678889999999999999999877764
Q ss_pred ccCCCCceeecCCCCCCCCCCCCCccchh-hhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEE
Q psy12587 155 RSLDHKCLDILYPSVYTEGLEKTTPEPIE-NVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKL 233 (390)
Q Consensus 155 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l 233 (390)
..++.++|||+|.+.|.+....... +.. ...++++++|+|++.+.++++.+.++++ ..|+ ++|
T Consensus 172 ----~~~i~~i~ngvd~~~f~~~~~~~~~~~~~---~~~~~~~i~y~G~l~~~~d~~ll~~la~----~~p~-----~~~ 235 (373)
T cd04950 172 ----NPNVVLVPNGVDYEHFAAARDPPPPPADL---AALPRPVIGYYGAIAEWLDLELLEALAK----ARPD-----WSF 235 (373)
T ss_pred ----CCCEEEcccccCHHHhhcccccCCChhHH---hcCCCCEEEEEeccccccCHHHHHHHHH----HCCC-----CEE
Confidence 2689999999999888654321110 111 2246789999999999878766554443 3453 999
Q ss_pred EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCC-----CCCCccHHhhhhcCC
Q psy12587 234 VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN-----EHFGIVPIEAMFCKR 308 (390)
Q Consensus 234 ~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~-----e~~~~~~~Ea~a~G~ 308 (390)
+++|.++.. .+...+ .. .+||+++|+++++++..+++.+|++++|+.. +++|++++||||||+
T Consensus 236 vliG~~~~~--------~~~~~~---~~-~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~ 303 (373)
T cd04950 236 VLIGPVDVS--------IDPSAL---LR-LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK 303 (373)
T ss_pred EEECCCcCc--------cChhHh---cc-CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC
Confidence 999987322 111111 11 3789999999999999999999999999763 468999999999999
Q ss_pred CEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 309 PVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 309 pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
|||+++.+...+ ....++++..|+++++++|.+++.++.....+ .+++ ..+.+||+..++++.+.+.+
T Consensus 304 PVVat~~~~~~~---~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~---~~~~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 304 PVVATPLPEVRR---YEDEVVLIADDPEEFVAAIEKALLEDGPARER---RRLR-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred CEEecCcHHHHh---hcCcEEEeCCCHHHHHHHHHHHHhcCCchHHH---HHHH-HHHHCCHHHHHHHHHHHHHh
Confidence 999998655443 33334444438999999999976654412222 1222 45899999999999976654
No 74
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=6.2e-27 Score=209.72 Aligned_cols=293 Identities=18% Similarity=0.194 Sum_probs=221.7
Q ss_pred CCCEEEEcccccchhHHHhhc-------ccEEEEeecCCccccchh------hhhhhhcc------cchhhHHHHHhcCc
Q psy12587 76 KPDLVFCDLVSICIPILQAKQ-------FKVLFYCHYPDQLLSKQG------SFLKSIYR------FPLNKLEEWTTCKA 136 (390)
Q Consensus 76 ~~Dvi~~~~~~~~~~~~~~~~-------~~~v~~~h~~~~~~~~~~------~~~~~~~~------~~~~~~~~~~~~~a 136 (390)
.|||||+|+|.+++....++. +|.|+|+|+......... ......+. .-...+.+..+..|
T Consensus 130 ~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~a 209 (487)
T COG0297 130 LPDIVHAHDWQTGLLPAYLKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYA 209 (487)
T ss_pred CCCEEEeecHHHHHHHHHHhhcccccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheec
Confidence 799999999988775544332 899999997544322210 00000000 01124557778899
Q ss_pred ceEEEccHhHHHHHHHH-hc-------cCCCCceeecCCCCCCCCCCCCCcc-------------------chhhhcCCC
Q psy12587 137 DKIVVNSEFTKSVVQAT-FR-------SLDHKCLDILYPSVYTEGLEKTTPE-------------------PIENVLNPL 189 (390)
Q Consensus 137 d~ii~~s~~~~~~~~~~-~~-------~~~~~~~~vi~~~~~~~~~~~~~~~-------------------~~~~~~~~l 189 (390)
|.+.++|+..++.+... ++ .....+++-|-||+|.+.+.+.... .+.+.++ +
T Consensus 210 d~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~g-L 288 (487)
T COG0297 210 DAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLG-L 288 (487)
T ss_pred cEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhC-C
Confidence 99999999999988721 11 0113567889999998877664322 1222333 4
Q ss_pred CC-CCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE
Q psy12587 190 PG-KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF 268 (390)
Q Consensus 190 ~~-~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~ 268 (390)
+. .+.+.+.++||+..+||++.+++++..+.+. ..++++.|.|+. .+...+..+++.+. .++..
T Consensus 289 ~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~-------~~~~vilG~gd~------~le~~~~~la~~~~--~~~~~ 353 (487)
T COG0297 289 DVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQ-------GWQLVLLGTGDP------ELEEALRALASRHP--GRVLV 353 (487)
T ss_pred CCCCCCcEEEEeeccccccchhHHHHHHHHHHHh-------CceEEEEecCcH------HHHHHHHHHHHhcC--ceEEE
Confidence 53 3568999999999999999999999999887 488999999943 56678888888874 46766
Q ss_pred ecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceec--------CcceeeecC-CHHHHH
Q psy12587 269 LTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD--------GRTGFLCES-NEEAFA 339 (390)
Q Consensus 269 ~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~--------~~~g~~~~~-~~~~l~ 339 (390)
.-..+..-...+++.||++++||++|++|++-++||.+|+++|+..+||..+.+.+ ..+|+++.+ ++++++
T Consensus 354 ~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~ 433 (487)
T COG0297 354 VIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLA 433 (487)
T ss_pred EeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHH
Confidence 66667777789999999999999999999999999999999999999999999875 468999998 999999
Q ss_pred HHHHHHhc---CChhH-HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 340 KAMKKIVD---NDGNI-IQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 340 ~~i~~l~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
.+|.+.+. +++ . ++.+..++.. ..|+|+..++++.++|+.++...
T Consensus 434 ~al~rA~~~y~~~~-~~w~~~~~~~m~---~d~sw~~sa~~y~~lY~~~~~~~ 482 (487)
T COG0297 434 NALRRALVLYRAPP-LLWRKVQPNAMG---ADFSWDLSAKEYVELYKPLLSKP 482 (487)
T ss_pred HHHHHHHHHhhCCH-HHHHHHHHhhcc---cccCchhHHHHHHHHHHHHhccc
Confidence 99998764 454 4 6666655544 68999999999999999988653
No 75
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.96 E-value=1.9e-27 Score=213.20 Aligned_cols=314 Identities=12% Similarity=0.031 Sum_probs=202.3
Q ss_pred CCcchhhh---Hhh-HhhhhcCCceeecCCcc---ccc-cCCCcceEEeccccc--cccchhhHHHHHHHHHHHHHHHHH
Q psy12587 2 LGATARLT---ITA-TAWGATGPRTTAHDHCF---KET-KDGTLPVKVIGDWLP--RNIFGKFYALCMYLRMIVIALYVA 71 (390)
Q Consensus 2 ~GG~~~~~---~~l-~~L~~~G~~V~~~~~~~---~~~-~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 71 (390)
.||...++ .+| ++|.++||+|++++... ... ...++.+..++.... ......+......+.... ....
T Consensus 7 ~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~l~~ 84 (348)
T TIGR01133 7 AGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVF--QARR 84 (348)
T ss_pred eCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHH--HHHH
Confidence 35555544 589 99999999999882211 111 224566666532111 111111111111111111 1123
Q ss_pred Hhh-cCCCEEEEcccccchh---HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHH
Q psy12587 72 WYS-EKPDLVFCDLVSICIP---ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTK 147 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 147 (390)
+++ .+||+||+|.....+. +.+..++|++++.++.. ..+.++++.+.+|.++++|+.++
T Consensus 85 ~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~-----------------~~~~~~~~~~~~d~ii~~~~~~~ 147 (348)
T TIGR01133 85 ILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV-----------------PGLTNKLLSRFAKKVLISFPGAK 147 (348)
T ss_pred HHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC-----------------ccHHHHHHHHHhCeeEECchhHh
Confidence 556 8999999997544333 33444578875433211 01234667788999999999776
Q ss_pred HHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHH-HHHHHHHHHhhcccc
Q psy12587 148 SVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLEL-AIYSLNSLRSRLSDE 226 (390)
Q Consensus 148 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~-ll~a~~~l~~~~~~~ 226 (390)
+.+ +..+++||++...+.+.. .++.++ ++ ++.++++++|+....|++.. ++++++.+.+..
T Consensus 148 ~~~----------~~~~i~n~v~~~~~~~~~---~~~~~~-~~-~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~--- 209 (348)
T TIGR01133 148 DHF----------EAVLVGNPVRQEIRSLPV---PRERFG-LR-EGKPTILVLGGSQGAKILNELVPKALAKLAEKG--- 209 (348)
T ss_pred hcC----------CceEEcCCcCHHHhcccc---hhhhcC-CC-CCCeEEEEECCchhHHHHHHHHHHHHHHHhhcC---
Confidence 543 237899999876554321 112222 23 36678889988777788655 458888876542
Q ss_pred cccceEE-EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhh
Q psy12587 227 MKTHVKL-VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMF 305 (390)
Q Consensus 227 ~~~~~~l-~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a 305 (390)
.++ +++|+++ . +++++.++++++.+.+.+. .. ++.++|+.||+++.++ .|++++|||+
T Consensus 210 ----~~~~~~~g~~~-~--------~~l~~~~~~~~l~~~v~~~---~~-~~~~~l~~ad~~v~~~----g~~~l~Ea~~ 268 (348)
T TIGR01133 210 ----IQIVHQTGKND-L--------EKVKNVYQELGIEAIVTFI---DE-NMAAAYAAADLVISRA----GASTVAELAA 268 (348)
T ss_pred ----cEEEEECCcch-H--------HHHHHHHhhCCceEEecCc---cc-CHHHHHHhCCEEEECC----ChhHHHHHHH
Confidence 444 3444432 2 6778888888775545554 22 6689999999999865 2689999999
Q ss_pred cCCCEEEecCCC-------cccceecCcceeeecC-C--HHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHH
Q psy12587 306 CKRPVIAVNSGG-------PKESVVDGRTGFLCES-N--EEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSI 375 (390)
Q Consensus 306 ~G~pvi~~~~~~-------~~e~i~~~~~g~~~~~-~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (390)
+|+|+|+++.++ ..+++.++.+|++++. | +++++++|.++++|++ .+++|++++++.+ +....+++++
T Consensus 269 ~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~~~~~~-~~~~~~~i~~ 346 (348)
T TIGR01133 269 AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPA-NLEAMAEAARKLA-KPDAAKRIAE 346 (348)
T ss_pred cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHH-HHHHHHHHHHhcC-CccHHHHHHh
Confidence 999999998754 2357778889999977 5 9999999999999988 9999999998876 5566555544
No 76
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.96 E-value=3.8e-27 Score=216.20 Aligned_cols=331 Identities=16% Similarity=0.117 Sum_probs=219.0
Q ss_pred CcchhhhHhh-HhhhhcCCc----eeecCCcccc----ccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHh
Q psy12587 3 GATARLTITA-TAWGATGPR----TTAHDHCFKE----TKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWY 73 (390)
Q Consensus 3 GG~~~~~~~l-~~L~~~G~~----V~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (390)
.|-...+..| +.|.+++++ ||..+....+ ....++.+.+++...+ ..+. .++
T Consensus 60 ~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~-------~~~~------------~~l 120 (425)
T PRK05749 60 VGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLP-------GAVR------------RFL 120 (425)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcH-------HHHH------------HHH
Confidence 3566788889 999998766 3333211111 1122344444422111 1111 234
Q ss_pred h-cCCCEEEEcccccc---hhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 74 S-EKPDLVFCDLVSIC---IPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 74 ~-~~~Dvi~~~~~~~~---~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
+ .+||+++++..... +..++..++|++++.|..... + .... ....++.+.+++.+|.+++.|+..++.
T Consensus 121 ~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~~~~~~-----s-~~~~--~~~~~~~r~~~~~~d~ii~~S~~~~~~ 192 (425)
T PRK05749 121 RFWRPKLVIIMETELWPNLIAELKRRGIPLVLANARLSER-----S-FKRY--QKFKRFYRLLFKNIDLVLAQSEEDAER 192 (425)
T ss_pred HhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEeccCChh-----h-HHHH--HHHHHHHHHHHHhCCEEEECCHHHHHH
Confidence 4 89999998753322 223334458888765532110 0 0000 113456677889999999999999999
Q ss_pred HHHHhccCCCCceeecCCCCCCCCCCCCC----ccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccc
Q psy12587 150 VQATFRSLDHKCLDILYPSVYTEGLEKTT----PEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSD 225 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~ 225 (390)
+.+. +.+.+ +.+++|. +.+...... ....++.+ . .+..+++++|+. .|+.+.+++|++.+.++.|+
T Consensus 193 l~~~--g~~~~-i~vi~n~-~~d~~~~~~~~~~~~~~r~~~---~-~~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~ 262 (425)
T PRK05749 193 FLAL--GAKNE-VTVTGNL-KFDIEVPPELAARAATLRRQL---A-PNRPVWIAASTH--EGEEELVLDAHRALLKQFPN 262 (425)
T ss_pred HHHc--CCCCC-cEecccc-cccCCCChhhHHHHHHHHHHh---c-CCCcEEEEeCCC--chHHHHHHHHHHHHHHhCCC
Confidence 9875 34345 8888885 222222111 11223333 2 245667777764 57899999999999887775
Q ss_pred ccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC------------ChHHHHHHHHhcceEEe-CCC
Q psy12587 226 EMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP------------SDAAKISLFKFCHCIIY-TPS 292 (390)
Q Consensus 226 ~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~------------~~~e~~~~~~~adv~v~-ps~ 292 (390)
++|+|+|+++.. .+++++.++++|+. .+.+.+.. +..|+..+|+.||++++ +|.
T Consensus 263 -----~~liivG~g~~r-------~~~l~~~~~~~gl~-~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~ 329 (425)
T PRK05749 263 -----LLLILVPRHPER-------FKEVEELLKKAGLS-YVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL 329 (425)
T ss_pred -----cEEEEcCCChhh-------HHHHHHHHHhCCCc-EEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc
Confidence 999999998752 15788899988874 34443321 23588999999999655 677
Q ss_pred CCCCCccHHhhhhcCCCEEEecC-CCcccceecC-cceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcC
Q psy12587 293 NEHFGIVPIEAMFCKRPVIAVNS-GGPKESVVDG-RTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFS 369 (390)
Q Consensus 293 ~e~~~~~~~Ea~a~G~pvi~~~~-~~~~e~i~~~-~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 369 (390)
.|++|.+++|||+||+|||+++. ++..++.+.. .+|.++++ |+++++++|.++++|++ .+++|++++++.+.++
T Consensus 330 ~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~~~-~~~~m~~~a~~~~~~~-- 406 (425)
T PRK05749 330 VKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTDPD-ARQAYGEAGVAFLKQN-- 406 (425)
T ss_pred CCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhC--
Confidence 79999999999999999999875 5566655442 35777776 99999999999999999 9999999999998554
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy12587 370 FQAFSIQLNTIVNNMLDK 387 (390)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~ 387 (390)
....+++.+.+.+.+.+
T Consensus 407 -~~~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 407 -QGALQRTLQLLEPYLPP 423 (425)
T ss_pred -ccHHHHHHHHHHHhccc
Confidence 35667777777776643
No 77
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.96 E-value=7.2e-27 Score=211.38 Aligned_cols=264 Identities=17% Similarity=0.142 Sum_probs=187.6
Q ss_pred HHhh-cCCCEEEEcccccchhHHHhhc---ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhH
Q psy12587 71 AWYS-EKPDLVFCDLVSICIPILQAKQ---FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFT 146 (390)
Q Consensus 71 ~~~~-~~~Dvi~~~~~~~~~~~~~~~~---~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 146 (390)
.+++ .+||+||++.+...++.++... +|++..+++... ...++.+++|.++++|+..
T Consensus 98 ~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~~-------------------~~~~~~~~ad~i~~~s~~~ 158 (380)
T PRK13609 98 LLLQAEKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFCL-------------------HKIWVHREVDRYFVATDHV 158 (380)
T ss_pred HHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCCC-------------------CcccccCCCCEEEECCHHH
Confidence 4566 9999999987655555443332 787644443210 0134567899999999999
Q ss_pred HHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccc
Q psy12587 147 KSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDE 226 (390)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~ 226 (390)
++.+.+. +.+.+++.+++++++..+.........++.++ ++.+.++++++.|+....|++..+++++.+. +
T Consensus 159 ~~~l~~~--gi~~~ki~v~G~p~~~~f~~~~~~~~~~~~~~-l~~~~~~il~~~G~~~~~k~~~~li~~l~~~----~-- 229 (380)
T PRK13609 159 KKVLVDI--GVPPEQVVETGIPIRSSFELKINPDIIYNKYQ-LCPNKKILLIMAGAHGVLGNVKELCQSLMSV----P-- 229 (380)
T ss_pred HHHHHHc--CCChhHEEEECcccChHHcCcCCHHHHHHHcC-CCCCCcEEEEEcCCCCCCcCHHHHHHHHhhC----C--
Confidence 9999875 45567898888877654333222333445554 3444566777789988889999998887642 3
Q ss_pred cccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhc
Q psy12587 227 MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFC 306 (390)
Q Consensus 227 ~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~ 306 (390)
+++++++|+... ...+++++.+++++ ++|+++|++++ +.++|+.||+++. ++.|++++|||+|
T Consensus 230 ---~~~~viv~G~~~------~~~~~l~~~~~~~~--~~v~~~g~~~~--~~~l~~~aD~~v~----~~gg~t~~EA~a~ 292 (380)
T PRK13609 230 ---DLQVVVVCGKNE------ALKQSLEDLQETNP--DALKVFGYVEN--IDELFRVTSCMIT----KPGGITLSEAAAL 292 (380)
T ss_pred ---CcEEEEEeCCCH------HHHHHHHHHHhcCC--CcEEEEechhh--HHHHHHhccEEEe----CCCchHHHHHHHh
Confidence 388877754321 22366777776654 68999999864 5799999999884 3468899999999
Q ss_pred CCCEEEec-CCCcc----cceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy12587 307 KRPVIAVN-SGGPK----ESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTI 380 (390)
Q Consensus 307 G~pvi~~~-~~~~~----e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
|+|+|+++ .++.. +++.+ +|..+.. |+++++++|.+++++++ .+++|++++++.. +.++++.+++.+.+.
T Consensus 293 g~PvI~~~~~~g~~~~n~~~~~~--~G~~~~~~~~~~l~~~i~~ll~~~~-~~~~m~~~~~~~~-~~~s~~~i~~~i~~~ 368 (380)
T PRK13609 293 GVPVILYKPVPGQEKENAMYFER--KGAAVVIRDDEEVFAKTEALLQDDM-KLLQMKEAMKSLY-LPEPADHIVDDILAE 368 (380)
T ss_pred CCCEEECCCCCCcchHHHHHHHh--CCcEEEECCHHHHHHHHHHHHCCHH-HHHHHHHHHHHhC-CCchHHHHHHHHHHh
Confidence 99999986 34421 23332 3433434 99999999999999998 9999999998876 678999999999988
Q ss_pred HHh
Q psy12587 381 VNN 383 (390)
Q Consensus 381 ~~~ 383 (390)
+..
T Consensus 369 ~~~ 371 (380)
T PRK13609 369 NHV 371 (380)
T ss_pred hhh
Confidence 764
No 78
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=5.5e-26 Score=205.19 Aligned_cols=269 Identities=16% Similarity=0.164 Sum_probs=188.7
Q ss_pred HHhh-cCCCEEEEcccccchhHHHhh---cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhH
Q psy12587 71 AWYS-EKPDLVFCDLVSICIPILQAK---QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFT 146 (390)
Q Consensus 71 ~~~~-~~~Dvi~~~~~~~~~~~~~~~---~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 146 (390)
.+++ .+||+|+++.+...+..++.. ++|++....+.. .. ..|+.+.+|.+++.|+.+
T Consensus 98 ~~l~~~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td~~--------~~-----------~~w~~~~~d~~~v~s~~~ 158 (391)
T PRK13608 98 NLLIKEKPDLILLTFPTPVMSVLTEQFNINIPVATVMTDYR--------LH-----------KNWITPYSTRYYVATKET 158 (391)
T ss_pred HHHHHhCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCC--------cc-----------cccccCCCCEEEECCHHH
Confidence 4556 999999998764433333322 278754433310 00 123457899999999999
Q ss_pred HHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccc
Q psy12587 147 KSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDE 226 (390)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~ 226 (390)
++.+.+. +.+.+++.+++++++..+.........+..++ ++.+.+.++++.|++...|+++.+++++.+ ..+
T Consensus 159 ~~~l~~~--gi~~~ki~v~GiPv~~~f~~~~~~~~~~~~~~-l~~~~~~ilv~~G~lg~~k~~~~li~~~~~---~~~-- 230 (391)
T PRK13608 159 KQDFIDV--GIDPSTVKVTGIPIDNKFETPIDQKQWLIDNN-LDPDKQTILMSAGAFGVSKGFDTMITDILA---KSA-- 230 (391)
T ss_pred HHHHHHc--CCCHHHEEEECeecChHhcccccHHHHHHHcC-CCCCCCEEEEECCCcccchhHHHHHHHHHh---cCC--
Confidence 9998875 45578899998888765443333333444444 444456677789999988999999998632 223
Q ss_pred cccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhc
Q psy12587 227 MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFC 306 (390)
Q Consensus 227 ~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~ 306 (390)
+++++++++.+. ...++++ +..+..++|.++|+++ ++.++|+.||+++.. +.|+++.|||++
T Consensus 231 ---~~~~vvv~G~~~------~l~~~l~---~~~~~~~~v~~~G~~~--~~~~~~~~aDl~I~k----~gg~tl~EA~a~ 292 (391)
T PRK13608 231 ---NAQVVMICGKSK------ELKRSLT---AKFKSNENVLILGYTK--HMNEWMASSQLMITK----PGGITISEGLAR 292 (391)
T ss_pred ---CceEEEEcCCCH------HHHHHHH---HHhccCCCeEEEeccc--hHHHHHHhhhEEEeC----CchHHHHHHHHh
Confidence 377766643321 1113333 3333456899999985 568999999999963 468899999999
Q ss_pred CCCEEEecC-CC----cccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy12587 307 KRPVIAVNS-GG----PKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 307 G~pvi~~~~-~~----~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
|+|+|+++. ++ ...++.+.+.|+... |+++++++|.++++|++ .+++|++++++.. +.++++.+++.+.+++
T Consensus 293 G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~-~~~~l~~~i~~ll~~~~-~~~~m~~~~~~~~-~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 293 CIPMIFLNPAPGQELENALYFEEKGFGKIAD-TPEEAIKIVASLTNGNE-QLTNMISTMEQDK-IKYATQTICRDLLDLI 369 (391)
T ss_pred CCCEEECCCCCCcchhHHHHHHhCCcEEEeC-CHHHHHHHHHHHhcCHH-HHHHHHHHHHHhc-CCCCHHHHHHHHHHHh
Confidence 999999864 33 122334555666555 99999999999999998 9999999999986 6899999999999998
Q ss_pred Hhhhhh
Q psy12587 382 NNMLDK 387 (390)
Q Consensus 382 ~~~~~~ 387 (390)
....+.
T Consensus 370 ~~~~~~ 375 (391)
T PRK13608 370 GHSSQP 375 (391)
T ss_pred hhhhhh
Confidence 875543
No 79
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.95 E-value=1.6e-25 Score=201.94 Aligned_cols=264 Identities=13% Similarity=0.075 Sum_probs=188.4
Q ss_pred HHhh-cCCCEEEEccccc----chhHHHhh-----cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEE
Q psy12587 71 AWYS-EKPDLVFCDLVSI----CIPILQAK-----QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIV 140 (390)
Q Consensus 71 ~~~~-~~~Dvi~~~~~~~----~~~~~~~~-----~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 140 (390)
.+++ .+||+||++++.. ...+..+. ++|++.++.+.... ...++.+.+|.++
T Consensus 94 ~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~------------------~~~w~~~~~d~~~ 155 (382)
T PLN02605 94 KGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTC------------------HPTWFHKGVTRCF 155 (382)
T ss_pred HHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCc------------------CcccccCCCCEEE
Confidence 4666 8999999976432 11222232 37887766553110 1134467899999
Q ss_pred EccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCC-CccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHH
Q psy12587 141 VNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKT-TPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSL 219 (390)
Q Consensus 141 ~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l 219 (390)
++|+..++.+.+. +.+.+++.+++++++.++..+. .....++.++ +++ +.++++++|+....|++..+++++..+
T Consensus 156 ~~s~~~~~~l~~~--g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~g-l~~-~~~~il~~Gg~~g~~~~~~li~~l~~~ 231 (382)
T PLN02605 156 CPSEEVAKRALKR--GLEPSQIRVYGLPIRPSFARAVRPKDELRRELG-MDE-DLPAVLLMGGGEGMGPLEETARALGDS 231 (382)
T ss_pred ECCHHHHHHHHHc--CCCHHHEEEECcccCHhhccCCCCHHHHHHHcC-CCC-CCcEEEEECCCcccccHHHHHHHHHHh
Confidence 9999999998876 4657899999999987654432 2344566665 343 677889999988899999999999865
Q ss_pred Hh----hcccccccceE-EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCC
Q psy12587 220 RS----RLSDEMKTHVK-LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNE 294 (390)
Q Consensus 220 ~~----~~~~~~~~~~~-l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e 294 (390)
.. ..+ +.+ ++++|.+. .+.+++++. ....+|.++|+++ ++.++|+.||++|.++
T Consensus 232 ~~~~~~~~~-----~~~~~vi~G~~~-------~~~~~L~~~----~~~~~v~~~G~~~--~~~~l~~aaDv~V~~~--- 290 (382)
T PLN02605 232 LYDKNLGKP-----IGQVVVICGRNK-------KLQSKLESR----DWKIPVKVRGFVT--NMEEWMGACDCIITKA--- 290 (382)
T ss_pred hccccccCC-----CceEEEEECCCH-------HHHHHHHhh----cccCCeEEEeccc--cHHHHHHhCCEEEECC---
Confidence 31 122 254 66777652 112334332 2235799999996 5789999999999865
Q ss_pred CCCccHHhhhhcCCCEEEecC------CCcccceecCcceeeecCCHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhhh
Q psy12587 295 HFGIVPIEAMFCKRPVIAVNS------GGPKESVVDGRTGFLCESNEEAFAKAMKKIVDN-DGNIIQQFSQFGFNRFNEK 367 (390)
Q Consensus 295 ~~~~~~~Ea~a~G~pvi~~~~------~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~ 367 (390)
.|++++|||+||+|+|+++. ++. +.+.+++.|+.+. |+++++++|.+++++ ++ .+++|++++++.. ..
T Consensus 291 -g~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~~~g~g~~~~-~~~~la~~i~~ll~~~~~-~~~~m~~~~~~~~-~~ 365 (382)
T PLN02605 291 -GPGTIAEALIRGLPIILNGYIPGQEEGNV-PYVVDNGFGAFSE-SPKEIARIVAEWFGDKSD-ELEAMSENALKLA-RP 365 (382)
T ss_pred -CcchHHHHHHcCCCEEEecCCCccchhhH-HHHHhCCceeecC-CHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhc-CC
Confidence 47899999999999999984 333 3444555676654 999999999999998 77 8999999999887 67
Q ss_pred cCHHHHHHHHHHHHH
Q psy12587 368 FSFQAFSIQLNTIVN 382 (390)
Q Consensus 368 ~~~~~~~~~~~~~~~ 382 (390)
.+.+.+++.+.+...
T Consensus 366 ~a~~~i~~~l~~~~~ 380 (382)
T PLN02605 366 EAVFDIVHDLHELVR 380 (382)
T ss_pred chHHHHHHHHHHHhh
Confidence 888888877766543
No 80
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.95 E-value=2.1e-27 Score=190.49 Aligned_cols=160 Identities=31% Similarity=0.505 Sum_probs=144.4
Q ss_pred CCCCCeEEEEeecccccCCHHHHHHHHHHHHhh-cccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE
Q psy12587 190 PGKEDIVFLSINRYERKKNLELAIYSLNSLRSR-LSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF 268 (390)
Q Consensus 190 ~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~-~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~ 268 (390)
..+++++|+++|++.+.||++.+++++..+.++ .+ ++.++|+|.+.. ...++..++.+++.+++.+
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~-----~~~l~i~G~~~~--------~~~~~~~~~~~~~~~~i~~ 77 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNP-----NYKLVIVGDGEY--------KKELKNLIEKLNLKENIIF 77 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHT-----TEEEEEESHCCH--------HHHHHHHHHHTTCGTTEEE
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCC-----CeEEEEEccccc--------ccccccccccccccccccc
Confidence 335889999999999999999999999999875 55 499999995543 3789999999999999999
Q ss_pred ecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 269 LTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 269 ~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
+|.++++++..+|+.||++++||..|++|.+++|||+||+|||+++.++..|++.++.+|+++++ |+++++++|.++++
T Consensus 78 ~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~ 157 (172)
T PF00534_consen 78 LGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLN 157 (172)
T ss_dssp EESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHH
T ss_pred cccccccccccccccceeccccccccccccccccccccccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q psy12587 348 NDGNIIQQFSQFGFNR 363 (390)
Q Consensus 348 ~~~~~~~~~~~~~~~~ 363 (390)
+++ .++.|+++++++
T Consensus 158 ~~~-~~~~l~~~~~~~ 172 (172)
T PF00534_consen 158 DPE-LRQKLGKNARER 172 (172)
T ss_dssp HHH-HHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHhcCC
Confidence 998 999999999864
No 81
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.95 E-value=1.4e-25 Score=215.93 Aligned_cols=297 Identities=14% Similarity=0.162 Sum_probs=208.6
Q ss_pred HHhh--cCCCEEEEcccccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccH
Q psy12587 71 AWYS--EKPDLVFCDLVSICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSE 144 (390)
Q Consensus 71 ~~~~--~~~Dvi~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~ 144 (390)
.+.+ ..=|+|++|++...+....+++ .++.++.|-|.+......... .+.-.-..+-.||.|-+.+.
T Consensus 140 ~i~~~~~~~d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp-------~r~~il~gll~aDligF~t~ 212 (797)
T PLN03063 140 VVKENYEEGDVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLP-------SRSELLRAVLTADLIGFHTY 212 (797)
T ss_pred HHHHhcCCCCEEEEecchhhhHHHHHHHhCCCCcEEEEecCCCCCHHHHhhCC-------CHHHHHHHHhcCCEEEeCCH
Confidence 3444 4447999999776554433332 799999997654322111000 01111222457889988888
Q ss_pred hHHHHHHHHhcc---C-----------CCCceeecCCCCCCCCCCCCCcc--------chhhhcCCCCCCCCeEEEEeec
Q psy12587 145 FTKSVVQATFRS---L-----------DHKCLDILYPSVYTEGLEKTTPE--------PIENVLNPLPGKEDIVFLSINR 202 (390)
Q Consensus 145 ~~~~~~~~~~~~---~-----------~~~~~~vi~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~i~~~g~ 202 (390)
..+..+.+.... . ...++.++|+|||++.|.+.... .+++.+ .++.+|+++||
T Consensus 213 ~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~-----~~~~lIl~VgR 287 (797)
T PLN03063 213 DFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFF-----AGRKVILGVDR 287 (797)
T ss_pred HHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhc-----CCCeEEEEecc
Confidence 887777652110 0 12468899999998877643211 112222 25678899999
Q ss_pred ccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcC--CC---------CcEEEecC
Q psy12587 203 YERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLK--LS---------DNVLFLTS 271 (390)
Q Consensus 203 ~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~--l~---------~~v~~~g~ 271 (390)
+.+.||+..+++|++.+.+++|+ ...++.|++++... . .+... ++++++.++++. +. +.+.+.+.
T Consensus 288 Ld~~KGi~~lL~Afe~lL~~~P~-~~~kvvLvqia~ps-r-~~~~~-y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~ 363 (797)
T PLN03063 288 LDMIKGIPQKYLAFEKFLEENPE-WRDKVMLVQIAVPT-R-NDVPE-YQKLKSQVHELVGRINGRFGSVSSVPIHHLDCS 363 (797)
T ss_pred cccccCHHHHHHHHHHHHHhCcc-ccCcEEEEEEecCC-C-CchHH-HHHHHHHHHHHHHHhhcccccCCCceeEEecCC
Confidence 99999999999999999888875 11124455444221 1 01112 244555555442 21 12234457
Q ss_pred CChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC----EEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHh
Q psy12587 272 PSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP----VIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIV 346 (390)
Q Consensus 272 ~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p----vi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~ 346 (390)
++.+++..+|+.||++++||..||+|++++||||||+| +|+|..+|..+.+ +.+|+++++ |+++++++|.+++
T Consensus 364 v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL 441 (797)
T PLN03063 364 VDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEAL 441 (797)
T ss_pred CCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999988876 457999999 9999999999999
Q ss_pred cCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 347 DNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
+++.+++++..+..++.+ .+++|..+++.+++.++++..
T Consensus 442 ~m~~~er~~r~~~~~~~v-~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 442 NMSDEERETRHRHNFQYV-KTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred hCCHHHHHHHHHHHHHhh-hhCCHHHHHHHHHHHHHHHhh
Confidence 966547888888888887 799999999999999887764
No 82
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.94 E-value=1.1e-24 Score=210.50 Aligned_cols=295 Identities=14% Similarity=0.171 Sum_probs=207.3
Q ss_pred cCCCEEEEcccccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
..-|+|++|++...+....++. .++-++.|.|.+..... +. .. .+.-.-..+-.+|.|-+.+......+
T Consensus 132 ~~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~~~~f----~~-lp--~~~~ll~~ll~~Dligf~t~~~~r~F 204 (726)
T PRK14501 132 RPGDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPSFEVF----RL-LP--WREEILEGLLGADLIGFHTYDYVRHF 204 (726)
T ss_pred CCCCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCChHHH----hh-CC--ChHHHHHHHhcCCeEEeCCHHHHHHH
Confidence 4558999999876554443332 68888999765422111 11 00 11111223457899999888877666
Q ss_pred HHHhcc------------C--CCCceeecCCCCCCCCCCCCCcc-c-------hhhhcCCCCCCCCeEEEEeecccccCC
Q psy12587 151 QATFRS------------L--DHKCLDILYPSVYTEGLEKTTPE-P-------IENVLNPLPGKEDIVFLSINRYERKKN 208 (390)
Q Consensus 151 ~~~~~~------------~--~~~~~~vi~~~~~~~~~~~~~~~-~-------~~~~~~~l~~~~~~~i~~~g~~~~~K~ 208 (390)
.+.... . ...++.++|+|+|++.|.+.... . +++.. .++++|+++||+.+.||
T Consensus 205 l~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~-----~~~~~il~VgRl~~~Kg 279 (726)
T PRK14501 205 LSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL-----RGRKIILSIDRLDYTKG 279 (726)
T ss_pred HHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc-----CCCEEEEEecCcccccC
Confidence 553110 0 02358999999999888654211 1 12221 35678999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCC-cchhHHHHHHHHHHHHcC-------CCCcEEEecCCChHHHHHH
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHN-IENVEYYKELGVLVKKLK-------LSDNVLFLTSPSDAAKISL 280 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~-~~~~~y~~~~~~~~~~~~-------l~~~v~~~g~~~~~e~~~~ 280 (390)
+..+++|+..+.+++|+ ...+++|+++|.+.... +....+..++.+++.+.+ ..+.+.+.|.++.+++..+
T Consensus 280 i~~~l~A~~~ll~~~p~-~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~l 358 (726)
T PRK14501 280 IPRRLLAFERFLEKNPE-WRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVAL 358 (726)
T ss_pred HHHHHHHHHHHHHhCcc-ccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHH
Confidence 99999999999888774 11247888887432211 222344455555544332 1234567789999999999
Q ss_pred HHhcceEEeCCCCCCCCccHHhhhhcCC-----CEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHH
Q psy12587 281 FKFCHCIIYTPSNEHFGIVPIEAMFCKR-----PVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQ 354 (390)
Q Consensus 281 ~~~adv~v~ps~~e~~~~~~~Ea~a~G~-----pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~ 354 (390)
|+.||++++||..||+|++++|||+||+ ||++...|+..++. .|+++++ |+++++++|.++++++.+++.
T Consensus 359 y~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d~~~la~ai~~~l~~~~~e~~ 434 (726)
T PRK14501 359 YRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPNDIEGIAAAIKRALEMPEEEQR 434 (726)
T ss_pred HHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCCHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999955 66666667777765 4899999 999999999999998753566
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhh
Q psy12587 355 QFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDK 387 (390)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
...+++++.+ .+|||+.+++++++.++++..+
T Consensus 435 ~r~~~~~~~v-~~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 435 ERMQAMQERL-RRYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhh
Confidence 6667788887 7999999999999999987543
No 83
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.93 E-value=1.4e-22 Score=182.81 Aligned_cols=292 Identities=14% Similarity=0.086 Sum_probs=217.4
Q ss_pred cCCCEEEEcccccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
..-|+|++|+....+....+.. .++-+..|-|.+..... +.+- ....+ -..+-.||.|-+.+...++.+
T Consensus 131 ~~~d~vWVhDYhL~llp~~LR~~~~~~~IgfFlHiPFPs~eif----r~LP--~r~~l-l~glL~aDliGFqt~~y~~~F 203 (487)
T TIGR02398 131 AEGATVWVHDYNLWLVPGYIRQLRPDLKIAFFHHTPFPSADVF----NILP--WREQI-IGSLLCCDYIGFHIPRYVENF 203 (487)
T ss_pred CCCCEEEEecchhhHHHHHHHHhCCCCeEEEEeeCCCCChHHH----hhCC--chHHH-HHHHhcCCeEEeCCHHHHHHH
Confidence 4458999999776554443333 68888889764422111 1100 01111 222447899999998888777
Q ss_pred HHHhcc---C--------------------------------CCCceeecCCCCCCCCCCCCCc--------cchhhhcC
Q psy12587 151 QATFRS---L--------------------------------DHKCLDILYPSVYTEGLEKTTP--------EPIENVLN 187 (390)
Q Consensus 151 ~~~~~~---~--------------------------------~~~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~ 187 (390)
.+.... . ..-++.++|.|||++.|..... ..+++.++
T Consensus 204 l~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~ 283 (487)
T TIGR02398 204 VDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIREMMERIRSELA 283 (487)
T ss_pred HHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC
Confidence 763210 0 0113788999999988755321 22444442
Q ss_pred CCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCC-CcchhHHHHHHHHHHHHc------
Q psy12587 188 PLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPH-NIENVEYYKELGVLVKKL------ 260 (390)
Q Consensus 188 ~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~-~~~~~~y~~~~~~~~~~~------ 260 (390)
++.+|++++|+...||+...++|+.++.+++|+ ...++.|+++|..... .+..+++..++++++.+.
T Consensus 284 -----~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe-~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~ 357 (487)
T TIGR02398 284 -----GVKLILSAERVDYTKGILEKLNAYERLLERRPE-LLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFAR 357 (487)
T ss_pred -----CceEEEEecccccccCHHHHHHHHHHHHHhCcc-ccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCC
Confidence 678899999999999999999999999999885 2235789988865432 223355667777777765
Q ss_pred -CCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC----CEEEecCCCcccceecCcceeeecC-C
Q psy12587 261 -KLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR----PVIAVNSGGPKESVVDGRTGFLCES-N 334 (390)
Q Consensus 261 -~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~----pvi~~~~~~~~e~i~~~~~g~~~~~-~ 334 (390)
+..+.+.+.+.++.+++..+|+.||+++.+|..||++++..||++|+. |+|.|..+|..+.+ ..+++++| |
T Consensus 358 ~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l---~~AllVNP~d 434 (487)
T TIGR02398 358 IGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVEL---KGALLTNPYD 434 (487)
T ss_pred CCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccchhhc---CCCEEECCCC
Confidence 556678889999999999999999999999999999999999999998 99999999888766 35799999 9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 335 EEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 335 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
+++++++|.++++++.+++++..+..++.+ ..++...+++.+++-+..
T Consensus 435 ~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v-~~~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 435 PVRMDETIYVALAMPKAEQQARMREMFDAV-NYYDVQRWADEFLAAVSP 482 (487)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHhhh
Confidence 999999999999999866766667777777 789999999998876654
No 84
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.93 E-value=7.2e-24 Score=178.27 Aligned_cols=120 Identities=36% Similarity=0.507 Sum_probs=104.7
Q ss_pred EeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC-hHHH
Q psy12587 199 SINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS-DAAK 277 (390)
Q Consensus 199 ~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~-~~e~ 277 (390)
++|++.+.||++.+++++..+.++.++ ++++++|.+... ...+..+.+.+..++|.+.|+++ .+++
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~-----~~~~i~G~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 175 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPD-----LKLVIAGDGPER--------EYLEELLAALLLLDRVIFLGGLDPEELL 175 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCC-----eEEEEEeCCCCh--------HHHHHHHHhcCCcccEEEeCCCCcHHHH
Confidence 889999999999999999999987775 999999998775 55555567777789999999984 4555
Q ss_pred HHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeee
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLC 331 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~ 331 (390)
..+++.||++++|+..|++|++++|||++|+|+|+|+.++..|++.++.+|+++
T Consensus 176 ~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 176 ALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred HHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 556666999999999999999999999999999999999999999998899864
No 85
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.92 E-value=2.5e-23 Score=184.00 Aligned_cols=243 Identities=15% Similarity=0.069 Sum_probs=172.1
Q ss_pred cCC-CEEEEcccccch------hHHHhhc--ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHh
Q psy12587 75 EKP-DLVFCDLVSICI------PILQAKQ--FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEF 145 (390)
Q Consensus 75 ~~~-Dvi~~~~~~~~~------~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~ 145 (390)
.++ |+||++++.... .+.++.+ +|+|+++|+.+....... ......++.++++||.++++|+.
T Consensus 62 ~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~~--------~~~~~~~~~~~~~aD~iI~~S~~ 133 (333)
T PRK09814 62 LKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFDSN--------YYLMKEEIDMLNLADVLIVHSKK 133 (333)
T ss_pred CCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhcccc--------chhhHHHHHHHHhCCEEEECCHH
Confidence 566 999998864421 1223333 899999998654211100 01145678889999999999999
Q ss_pred HHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccc
Q psy12587 146 TKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSD 225 (390)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~ 225 (390)
+++.+.+. +.+..++.++++..+....... . ..+..+.++|+|++..... + ....+
T Consensus 134 ~~~~l~~~--g~~~~~i~~~~~~~~~~~~~~~------~-----~~~~~~~i~yaG~l~k~~~----l------~~~~~- 189 (333)
T PRK09814 134 MKDRLVEE--GLTTDKIIVQGIFDYLNDIELV------K-----TPSFQKKINFAGNLEKSPF----L------KNWSQ- 189 (333)
T ss_pred HHHHHHHc--CCCcCceEeccccccccccccc------c-----cccCCceEEEecChhhchH----H------HhcCC-
Confidence 99999875 3435677777655433211110 0 1124568999999984322 1 11223
Q ss_pred ccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCC-----------CC
Q psy12587 226 EMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS-----------NE 294 (390)
Q Consensus 226 ~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~-----------~e 294 (390)
+++|+++|+|+.. . ...++|.|+|+++.+|+..+|+. |+.+.+.. .-
T Consensus 190 ----~~~l~i~G~g~~~--------~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~ 247 (333)
T PRK09814 190 ----GIKLTVFGPNPED--------L---------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKY 247 (333)
T ss_pred ----CCeEEEECCCccc--------c---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhc
Confidence 3899999998753 2 23578999999999999999998 65544321 23
Q ss_pred CCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHH
Q psy12587 295 HFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFS 374 (390)
Q Consensus 295 ~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
.+|.++.||||||+|||+++.++..++++++.+|++++ +.+++++++.++ +++ .+++|++++++.+ +++.-..+.
T Consensus 248 ~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~~~~G~~v~-~~~el~~~l~~~--~~~-~~~~m~~n~~~~~-~~~~~g~~~ 322 (333)
T PRK09814 248 NNPHKLSLYLAAGLPVIVWSKAAIADFIVENGLGFVVD-SLEELPEIIDNI--TEE-EYQEMVENVKKIS-KLLRNGYFT 322 (333)
T ss_pred cchHHHHHHHHCCCCEEECCCccHHHHHHhCCceEEeC-CHHHHHHHHHhc--CHH-HHHHHHHHHHHHH-HHHhcchhH
Confidence 57888999999999999999999999999999999999 888999999986 345 7899999999887 555544444
Q ss_pred HH
Q psy12587 375 IQ 376 (390)
Q Consensus 375 ~~ 376 (390)
++
T Consensus 323 ~~ 324 (333)
T PRK09814 323 KK 324 (333)
T ss_pred HH
Confidence 43
No 86
>KOG2941|consensus
Probab=99.91 E-value=2.5e-21 Score=159.63 Aligned_cols=360 Identities=11% Similarity=0.097 Sum_probs=237.4
Q ss_pred CCcchhhhHhhHhhhhcCCceeec---CC-cccc-ccCCCcceEEeccccccccchhh-HHHHHHHHHHHHHHHHHHhh-
Q psy12587 2 LGATARLTITATAWGATGPRTTAH---DH-CFKE-TKDGTLPVKVIGDWLPRNIFGKF-YALCMYLRMIVIALYVAWYS- 74 (390)
Q Consensus 2 ~GG~~~~~~~l~~L~~~G~~V~~~---~~-~~~~-~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 74 (390)
+|-..|+.++-..|++.|++|.++ +. ..++ ....++.++.++........+++ ......+.++...++. +.-
T Consensus 23 vGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~~~~~~p~~~~l~lKvf~Qfl~Ll~a-L~~~ 101 (444)
T KOG2941|consen 23 VGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLPFLQGGPRVLFLPLKVFWQFLSLLWA-LFVL 101 (444)
T ss_pred cCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCcccCCCchhhhhHHHHHHHHHHHHHH-HHhc
Confidence 355667776668889999999988 21 2222 23455666666432222222211 1111222222222222 333
Q ss_pred cCCCEEEEccccc--chhH----HHhhcccEEEEeecCCcc-ccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHH
Q psy12587 75 EKPDLVFCDLVSI--CIPI----LQAKQFKVLFYCHYPDQL-LSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTK 147 (390)
Q Consensus 75 ~~~Dvi~~~~~~~--~~~~----~~~~~~~~v~~~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 147 (390)
..+|+|.+++++. .+.+ ..+.+.++++++|+..+. ......-....+-.+.+++|+.+-+.||.-.|+|+.++
T Consensus 102 ~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk~a~~nLcVT~AMr 181 (444)
T KOG2941|consen 102 RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGKLADYNLCVTKAMR 181 (444)
T ss_pred cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhcccccchhhHHHHH
Confidence 9999999999653 2222 234459999999986542 11111122233445678999999999999999999999
Q ss_pred HHHHHHhccCCCCceeecCCCC-------------------CCCCCCCC---C----ccchhhhcC----CCCCCCCeEE
Q psy12587 148 SVVQATFRSLDHKCLDILYPSV-------------------YTEGLEKT---T----PEPIENVLN----PLPGKEDIVF 197 (390)
Q Consensus 148 ~~~~~~~~~~~~~~~~vi~~~~-------------------~~~~~~~~---~----~~~~~~~~~----~l~~~~~~~i 197 (390)
+.+.+.++. .+..+++.-- |...|... . ...+.++.. .+..+.+.++
T Consensus 182 ~dL~qnWgi---~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pall 258 (444)
T KOG2941|consen 182 EDLIQNWGI---NRAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPERPALL 258 (444)
T ss_pred HHHHHhcCC---ceeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCCCeEE
Confidence 999998872 3445544211 10111100 0 000111110 0122356677
Q ss_pred EEeecccccCCHHHHHHHHHHHHhhccc--ccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChH
Q psy12587 198 LSINRYERKKNLELAIYSLNSLRSRLSD--EMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDA 275 (390)
Q Consensus 198 ~~~g~~~~~K~~~~ll~a~~~l~~~~~~--~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~ 275 (390)
+...++.+..++..+++|+..-.++..+ ..-+++-++|.|.|+.. +.+.+.++++++...-....+++.+
T Consensus 259 vsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlk--------E~Y~~~I~~~~~~~v~~~tpWL~aE 330 (444)
T KOG2941|consen 259 VSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLK--------EKYSQEIHEKNLQHVQVCTPWLEAE 330 (444)
T ss_pred EecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchh--------HHHHHHHHHhcccceeeeecccccc
Confidence 8888889999999999999843222211 00135888999999987 8888889999885544557899999
Q ss_pred HHHHHHHhcceEEeC--CC-CCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhc----C
Q psy12587 276 AKISLFKFCHCIIYT--PS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD----N 348 (390)
Q Consensus 276 e~~~~~~~adv~v~p--s~-~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~----~ 348 (390)
+.+.+++.||+.|+. |. .=-.|+++++...||+||++-+..-+.|++++++||+++. |.+++++.+..+++ +
T Consensus 331 DYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~-Ds~eLa~ql~~lf~~fp~~ 409 (444)
T KOG2941|consen 331 DYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFE-DSEELAEQLQMLFKNFPDN 409 (444)
T ss_pred cchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEec-cHHHHHHHHHHHHhcCCCC
Confidence 999999999976653 33 2347889999999999999999999999999999999999 99999999999998 6
Q ss_pred ChhHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy12587 349 DGNIIQQFSQFGFNRFNEKFSFQAFSIQL 377 (390)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (390)
.. ...++.+++++. +...|+..-++.
T Consensus 410 a~-~l~~lkkn~~e~--~e~RW~~~W~~~ 435 (444)
T KOG2941|consen 410 AD-ELNQLKKNLREE--QELRWDESWERT 435 (444)
T ss_pred HH-HHHHHHHhhHHH--HhhhHHHHHHHh
Confidence 66 888888888887 456666554443
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.90 E-value=5.6e-22 Score=178.42 Aligned_cols=271 Identities=17% Similarity=0.126 Sum_probs=176.6
Q ss_pred Hhh-cCCCEEEEcccccc----hhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHH-hcCcceEEEccHh
Q psy12587 72 WYS-EKPDLVFCDLVSIC----IPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWT-TCKADKIVVNSEF 145 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~~----~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ad~ii~~s~~ 145 (390)
+++ .+||+||+|+.... ..+++..++|++...++.... .. ... +.....+.+ .+.+|.++++|+.
T Consensus 81 ~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~~s~-~~----~~~----~~~~~~r~~~~~~ad~~~~~s~~ 151 (365)
T TIGR00236 81 LLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLRTG-DR----YSP----MPEEINRQLTGHIADLHFAPTEQ 151 (365)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCCCcC-CC----CCC----CccHHHHHHHHHHHHhccCCCHH
Confidence 445 99999999974322 233444558986433221100 00 000 001112222 3358999999999
Q ss_pred HHHHHHHHhccCCCCceeecCCCC-CCCCCCC--CCccchhhhcCCCCCCCCeEEEEeeccc-ccCCHHHHHHHHHHHHh
Q psy12587 146 TKSVVQATFRSLDHKCLDILYPSV-YTEGLEK--TTPEPIENVLNPLPGKEDIVFLSINRYE-RKKNLELAIYSLNSLRS 221 (390)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~~--~~~~~~~~~~~~l~~~~~~~i~~~g~~~-~~K~~~~ll~a~~~l~~ 221 (390)
.++.+.+. +.+++++.+++|++ |...... ......++.+ ..++.++++..++.. ..|+++.+++++.++.+
T Consensus 152 ~~~~l~~~--G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~---~~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~ 226 (365)
T TIGR00236 152 AKDNLLRE--NVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEF---GEDKRYILLTLHRRENVGEPLENIFKAIREIVE 226 (365)
T ss_pred HHHHHHHc--CCCcccEEEeCChHHHHHHHHHhhccchhHHHhc---CCCCCEEEEecCchhhhhhHHHHHHHHHHHHHH
Confidence 99999875 56678999999996 4322111 1122233333 222344544444542 45899999999999887
Q ss_pred hcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHH
Q psy12587 222 RLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPI 301 (390)
Q Consensus 222 ~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~ 301 (390)
+.++ +.+++.|.++. +....+.+.++..++|.+.|.++..++..+++.||+++.+| |..++
T Consensus 227 ~~~~-----~~~vi~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~ 287 (365)
T TIGR00236 227 EFED-----VQIVYPVHLNP---------VVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQE 287 (365)
T ss_pred HCCC-----CEEEEECCCCh---------HHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHH
Confidence 7664 88888765432 11112333445567899999999999999999999999877 55689
Q ss_pred hhhhcCCCEEEe-cCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 302 EAMFCKRPVIAV-NSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 302 Ea~a~G~pvi~~-~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
|||+||+|||++ +.++.++.+..+ .+.+++.|++++++++.+++++++ .+++++++...+. +..+++++++.+.
T Consensus 288 EA~a~g~PvI~~~~~~~~~e~~~~g-~~~lv~~d~~~i~~ai~~ll~~~~-~~~~~~~~~~~~g-~~~a~~ri~~~l~ 362 (365)
T TIGR00236 288 EAPSLGKPVLVLRDTTERPETVEAG-TNKLVGTDKENITKAAKRLLTDPD-EYKKMSNASNPYG-DGEASERIVEELL 362 (365)
T ss_pred HHHHcCCCEEECCCCCCChHHHhcC-ceEEeCCCHHHHHHHHHHHHhChH-HHHHhhhcCCCCc-CchHHHHHHHHHH
Confidence 999999999996 667788888765 555664499999999999999988 8888876552222 3344444444443
No 88
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=7.1e-21 Score=171.01 Aligned_cols=229 Identities=29% Similarity=0.412 Sum_probs=189.7
Q ss_pred CcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCC-CeEEEEeecccccCCHHHHH
Q psy12587 135 KADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKE-DIVFLSINRYERKKNLELAI 213 (390)
Q Consensus 135 ~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~~~g~~~~~K~~~~ll 213 (390)
.++.+++.+......+...+. ..++.++|++++...+...... +.... ...++++|++.+.||++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~g~~~~~k~~~~~i 218 (381)
T COG0438 150 LADRVIAVSPALKELLEALGV---PNKIVVIPNGIDTEKFAPARIG--------LLPEGGKFVVLYVGRLDPEKGLDLLI 218 (381)
T ss_pred cccEEEECCHHHHHHHHHhCC---CCCceEecCCcCHHHcCccccC--------CCcccCceEEEEeeccChhcCHHHHH
Confidence 478899999888666666533 3478999999998877642000 12222 37899999999999999999
Q ss_pred HHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCC
Q psy12587 214 YSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN 293 (390)
Q Consensus 214 ~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~ 293 (390)
+++..+....++ +.+.++|.++.. .+.+...+.+++..+++.+.|.++++++..+++.||++++||..
T Consensus 219 ~~~~~~~~~~~~-----~~~~~~g~~~~~-------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~ 286 (381)
T COG0438 219 EAAAKLKKRGPD-----IKLVIVGDGPER-------REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLS 286 (381)
T ss_pred HHHHHhhhhcCC-----eEEEEEcCCCcc-------HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEecccc
Confidence 999999988764 899999998752 14566677787777899999999988888899999999999999
Q ss_pred CCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHH
Q psy12587 294 EHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQA 372 (390)
Q Consensus 294 e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
|++|++++|||++|+|||+++.++..+++.++.+|+++.. +.+++++++..++++.+ .++.+.+.+++.+.+.|+|+.
T Consensus 287 e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 365 (381)
T COG0438 287 EGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPE-LREELGEAARERVEEEFSWER 365 (381)
T ss_pred ccchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999999999988777887776 79999999999999986 788888766666668999999
Q ss_pred HHHHHHHHHHhhhhh
Q psy12587 373 FSIQLNTIVNNMLDK 387 (390)
Q Consensus 373 ~~~~~~~~~~~~~~~ 387 (390)
.++++.+++......
T Consensus 366 ~~~~~~~~~~~~~~~ 380 (381)
T COG0438 366 IAEQLLELYEELLAE 380 (381)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999877643
No 89
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.89 E-value=1.1e-21 Score=177.77 Aligned_cols=270 Identities=12% Similarity=0.062 Sum_probs=173.0
Q ss_pred HHhh-cCCCEEEEcccc-cchh-H--HHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHh
Q psy12587 71 AWYS-EKPDLVFCDLVS-ICIP-I--LQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEF 145 (390)
Q Consensus 71 ~~~~-~~~Dvi~~~~~~-~~~~-~--~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~ 145 (390)
.+++ .+||+||+++.. .... + ++..++|++++.+...+ .. . ....+.+.+.+|.+++.|+.
T Consensus 79 ~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~-~~---------~----~~~~~~~~~~~d~i~~~~~~ 144 (380)
T PRK00025 79 RRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW-AW---------R----QGRAFKIAKATDHVLALFPF 144 (380)
T ss_pred HHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh-hc---------C----chHHHHHHHHHhhheeCCcc
Confidence 4556 999999998742 2222 2 23345898877553211 00 0 01112346778999999999
Q ss_pred HHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecc-ccc-CCHHHHHHHHHHHHhhc
Q psy12587 146 TKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRY-ERK-KNLELAIYSLNSLRSRL 223 (390)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~-~~~-K~~~~ll~a~~~l~~~~ 223 (390)
.++.+.+. + .++.+++|++.............++.++ ++.+...++++.|+- ... +.++.+++++..+.++.
T Consensus 145 ~~~~~~~~--g---~~~~~~G~p~~~~~~~~~~~~~~~~~l~-~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~ 218 (380)
T PRK00025 145 EAAFYDKL--G---VPVTFVGHPLADAIPLLPDRAAARARLG-LDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRY 218 (380)
T ss_pred CHHHHHhc--C---CCeEEECcCHHHhcccccChHHHHHHcC-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 88887663 2 2477777776443222122233444454 333334445555533 332 45788999999998776
Q ss_pred ccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHc-CCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHh
Q psy12587 224 SDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKL-KLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIE 302 (390)
Q Consensus 224 ~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~-~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~E 302 (390)
++ ++++++|+.+. +.+++++.++++ ++. +.+.. .++..+|+.||+++++| |.+.+|
T Consensus 219 ~~-----~~~ii~~~~~~-------~~~~~~~~~~~~~~~~--v~~~~----~~~~~~~~~aDl~v~~s-----G~~~lE 275 (380)
T PRK00025 219 PD-----LRFVLPLVNPK-------RREQIEEALAEYAGLE--VTLLD----GQKREAMAAADAALAAS-----GTVTLE 275 (380)
T ss_pred CC-----eEEEEecCChh-------hHHHHHHHHhhcCCCC--eEEEc----ccHHHHHHhCCEEEECc-----cHHHHH
Confidence 64 89999876322 126677777776 553 54432 36789999999999987 788889
Q ss_pred hhhcCCCEEEe-----------------cCCCcccceecCc--ceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q psy12587 303 AMFCKRPVIAV-----------------NSGGPKESVVDGR--TGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFN 362 (390)
Q Consensus 303 a~a~G~pvi~~-----------------~~~~~~e~i~~~~--~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 362 (390)
||++|+|+|++ +.+++++++.++. .+++.+. |++++++.+.++++|++ .+++|++++.+
T Consensus 276 a~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~~~~ 354 (380)
T PRK00025 276 LALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGA-RRQALLEGFTE 354 (380)
T ss_pred HHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHH
Confidence 99999999987 3344556665543 4466666 99999999999999999 99999988755
Q ss_pred HHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 363 RFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
... ... ...++++.+.+.+.+.
T Consensus 355 ~~~-~~~-~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 355 LHQ-QLR-CGADERAAQAVLELLK 376 (380)
T ss_pred HHH-HhC-CCHHHHHHHHHHHHhh
Confidence 542 222 2244555555555443
No 90
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.88 E-value=1.1e-20 Score=170.24 Aligned_cols=250 Identities=17% Similarity=0.124 Sum_probs=170.5
Q ss_pred Hhh-cCCCEEEEccccc-ch---hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhH
Q psy12587 72 WYS-EKPDLVFCDLVSI-CI---PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFT 146 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~-~~---~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 146 (390)
+++ .+||+||+|+... .+ .+++..++|++...|+...+.. .. ........+.+.+|.++++|+..
T Consensus 83 ~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~s~~~--~~--------~~~~~r~~~~~~ad~~~~~s~~~ 152 (363)
T cd03786 83 VLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAGLRSFDR--GM--------PDEENRHAIDKLSDLHFAPTEEA 152 (363)
T ss_pred HHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEecccccCCC--CC--------CchHHHHHHHHHhhhccCCCHHH
Confidence 344 8999999997432 22 2334445898865554221100 00 00111223456789999999999
Q ss_pred HHHHHHHhccCCCCceeecCCCC-CCCCCCCC-Cc-cchhhhcCCCCCCCCeEEEEeecccc---cCCHHHHHHHHHHHH
Q psy12587 147 KSVVQATFRSLDHKCLDILYPSV-YTEGLEKT-TP-EPIENVLNPLPGKEDIVFLSINRYER---KKNLELAIYSLNSLR 220 (390)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~~~-~~-~~~~~~~~~l~~~~~~~i~~~g~~~~---~K~~~~ll~a~~~l~ 220 (390)
++.+.+. +.+.+++.+++|++ |...+... .. ...+..++ ++ ++++++++.|+... .|+++.++++++.+.
T Consensus 153 ~~~l~~~--G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~-~~-~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~ 228 (363)
T cd03786 153 RRNLLQE--GEPPERIFVVGNTMIDALLRLLELAKKELILELLG-LL-PKKYILVTLHRVENVDDGEQLEEILEALAELA 228 (363)
T ss_pred HHHHHHc--CCCcccEEEECchHHHHHHHHHHhhccchhhhhcc-cC-CCCEEEEEeCCccccCChHHHHHHHHHHHHHH
Confidence 9998875 46678899999985 43222111 11 11122232 22 35677788888764 799999999999886
Q ss_pred hhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCC-CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCcc
Q psy12587 221 SRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKL-SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIV 299 (390)
Q Consensus 221 ~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l-~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~ 299 (390)
+. + +.+++.|.+... +.+++.+.++++ .++|.+.|.....++..+|+.||++|.+|. ..
T Consensus 229 ~~--~-----~~vi~~~~~~~~--------~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg-----gi 288 (363)
T cd03786 229 EE--D-----VPVVFPNHPRTR--------PRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG-----GI 288 (363)
T ss_pred hc--C-----CEEEEECCCChH--------HHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc-----cH
Confidence 53 2 677777766544 778888888776 678999999888999999999999999983 35
Q ss_pred HHhhhhcCCCEEEecC-CCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHH
Q psy12587 300 PIEAMFCKRPVIAVNS-GGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFS 357 (390)
Q Consensus 300 ~~Ea~a~G~pvi~~~~-~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~ 357 (390)
..|||++|+|+|+++. +..++.+++|. +..+..|+++++++|.++++++. .+..|+
T Consensus 289 ~~Ea~~~g~PvI~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~i~~ll~~~~-~~~~~~ 345 (363)
T cd03786 289 QEEASFLGVPVLNLRDRTERPETVESGT-NVLVGTDPEAILAAIEKLLSDEF-AYSLMS 345 (363)
T ss_pred HhhhhhcCCCEEeeCCCCccchhhheee-EEecCCCHHHHHHHHHHHhcCch-hhhcCC
Confidence 7899999999999875 44556665442 33333279999999999999887 665653
No 91
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.85 E-value=6.9e-20 Score=168.48 Aligned_cols=218 Identities=14% Similarity=0.145 Sum_probs=178.5
Q ss_pred hcCcceEEEccHhHHHHHHHHhccC-CCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEee--cccccCCH
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSL-DHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSIN--RYERKKNL 209 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g--~~~~~K~~ 209 (390)
+..+|.+|+.|+...+.+.+.++.. ...++..||.+.. ...... ....+..+++++ |+ +.|.+
T Consensus 270 ~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~~~-~~~~~~------------s~r~~~~~I~v~idrL-~ek~~ 335 (519)
T TIGR03713 270 LSRADLIIVDREDIERLLEENYRENYVEFDISRITPFDT-RLRLGQ------------SQQLYETEIGFWIDGL-SDEEL 335 (519)
T ss_pred hhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCccce-EEecCh------------hhcccceEEEEEcCCC-ChHHH
Confidence 5678999999988888787766521 1135667776543 111110 112334567777 99 99999
Q ss_pred HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC--------------------------
Q psy12587 210 ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-------------------------- 263 (390)
Q Consensus 210 ~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-------------------------- 263 (390)
+.+|+++.++..+.|+ ++|.+.|.+... .+...+++.++++++.
T Consensus 336 ~~~I~av~~~~~~~p~-----~~L~~~gy~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (519)
T TIGR03713 336 QQILQQLLQYILKNPD-----YELKILTYNNDN-----DITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQ 405 (519)
T ss_pred HHHHHHHHHHHhhCCC-----eEEEEEEecCch-----hHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhc
Confidence 9999999999999996 999999988542 3346677777777665
Q ss_pred ---CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHH
Q psy12587 264 ---DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAK 340 (390)
Q Consensus 264 ---~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~ 340 (390)
+.|.|.|..+..++.+.|..+.++|.+|..|+++ +.+||++.|+|+| .-|..+++.++.||+++. |..+|++
T Consensus 406 ~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~li~-d~~~l~~ 480 (519)
T TIGR03713 406 KEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGYIID-DISELLK 480 (519)
T ss_pred ccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcEEeC-CHHHHHH
Confidence 7899999999888899999999999999999999 9999999999999 456789999999999997 9999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy12587 341 AMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 341 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
++..++.+++ .+.++...+.+.+ ++||-+.+.++|.+++
T Consensus 481 al~~~L~~~~-~wn~~~~~sy~~~-~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 481 ALDYYLDNLK-NWNYSLAYSIKLI-DDYSSENIIERLNELI 519 (519)
T ss_pred HHHHHHhCHH-HHHHHHHHHHHHH-HHhhHHHHHHHHHhhC
Confidence 9999999999 9999999999998 8999999999998753
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.85 E-value=1.4e-18 Score=166.83 Aligned_cols=295 Identities=13% Similarity=0.156 Sum_probs=203.3
Q ss_pred cCCCEEEEcccccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
..=|+|++|++...+....++. .++-++.|-|.+...... .+-. ...+ -..+-.||.|-+.+...+..+
T Consensus 230 ~~gD~VWVHDYHL~LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr----~LP~--r~el-L~glL~aDlIGFqT~~y~rhF 302 (934)
T PLN03064 230 EEGDVVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPFPSSEIHR----TLPS--RSEL-LRSVLAADLVGFHTYDYARHF 302 (934)
T ss_pred CCCCEEEEecchhhHHHHHHHHhCCCCcEEEEecCCCCChHHHh----hCCc--HHHH-HHHHhcCCeEEeCCHHHHHHH
Confidence 4447999999876554443332 788899997654222111 1000 0111 222447899999998888777
Q ss_pred HHHhc---cCC-----------CCceeecCCCCCCCCCCCCCc--------cchhhhcCCCCCCCCeEEEEeecccccCC
Q psy12587 151 QATFR---SLD-----------HKCLDILYPSVYTEGLEKTTP--------EPIENVLNPLPGKEDIVFLSINRYERKKN 208 (390)
Q Consensus 151 ~~~~~---~~~-----------~~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~i~~~g~~~~~K~ 208 (390)
.+... +.. ..++.+.|.|||++.|..... ..+++.+ .++.+|++++|+...||
T Consensus 303 l~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~-----~g~kiIlgVDRLD~~KG 377 (934)
T PLN03064 303 VSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERF-----AGRKVMLGVDRLDMIKG 377 (934)
T ss_pred HHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHh-----CCceEEEEeeccccccC
Confidence 75221 000 123667899999988764321 1334443 25678999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCC-CCcchhHHHHHHHHHHHHcC-------CCCcEEEecCCChHHHHHH
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDP-HNIENVEYYKELGVLVKKLK-------LSDNVLFLTSPSDAAKISL 280 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~-~~~~~~~y~~~~~~~~~~~~-------l~~~v~~~g~~~~~e~~~~ 280 (390)
+...+.|+..+.+++|+ ...++.|+-+..... ..++.+.+..++.+++.+.+ ..+-+.+...++.+++..+
T Consensus 378 I~~kL~AfE~fL~~~Pe-~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~Al 456 (934)
T PLN03064 378 IPQKILAFEKFLEENPE-WRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCAL 456 (934)
T ss_pred HHHHHHHHHHHHHhCcc-ccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHH
Confidence 99999999999888885 112344554442221 11122333344544444432 1122334455899999999
Q ss_pred HHhcceEEeCCCCCCCCccHHhhhhcCC----CEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHH
Q psy12587 281 FKFCHCIIYTPSNEHFGIVPIEAMFCKR----PVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQ 355 (390)
Q Consensus 281 ~~~adv~v~ps~~e~~~~~~~Ea~a~G~----pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~ 355 (390)
|+.||++++||..||++++..|||+|+. ++|.|...|..+.+ +..+++++| |.++++++|.++++.+.++++.
T Consensus 457 Y~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~ 534 (934)
T PLN03064 457 YAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVAASIAQALNMPEEEREK 534 (934)
T ss_pred HHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCCCHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999999999999954 45558888888777 446899999 9999999999999966658888
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHhhh
Q psy12587 356 FSQFGFNRFNEKFSFQAFSIQLNTIVNNML 385 (390)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
+.+..++.+ ..+++..+++.+++-+.++.
T Consensus 535 r~~~~~~~V-~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 535 RHRHNFMHV-TTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHhhc-ccCCHHHHHHHHHHHHHHHH
Confidence 888899988 78999999999988877664
No 93
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.84 E-value=4.5e-18 Score=158.41 Aligned_cols=302 Identities=14% Similarity=0.099 Sum_probs=218.0
Q ss_pred cCCCEEEEcccccchhHHHh-----------------hcccEEEEeecCCcccc--chhhhhhhh---------------
Q psy12587 75 EKPDLVFCDLVSICIPILQA-----------------KQFKVLFYCHYPDQLLS--KQGSFLKSI--------------- 120 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~-----------------~~~~~v~~~h~~~~~~~--~~~~~~~~~--------------- 120 (390)
.+||+||+|.+.+++....+ .+.++++|+|++..... .......+.
T Consensus 160 ~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~~~~~ 239 (601)
T TIGR02094 160 IDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQL 239 (601)
T ss_pred CCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCCHHHH
Confidence 79999999998776644331 12678999998755332 111111100
Q ss_pred ---cccc-----hhhHHHHHhcCcceEEEccHhHHHHHHHHhcc----CC--CCceeecCCCCCCCCCCCCCccc-----
Q psy12587 121 ---YRFP-----LNKLEEWTTCKADKIVVNSEFTKSVVQATFRS----LD--HKCLDILYPSVYTEGLEKTTPEP----- 181 (390)
Q Consensus 121 ---~~~~-----~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~----~~--~~~~~vi~~~~~~~~~~~~~~~~----- 181 (390)
.... .-.+.+..+..||.+.++|+...+...+.++. .+ ..++.-|-|||+...+.+.....
T Consensus 240 ~~~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~~~y 319 (601)
T TIGR02094 240 LALGRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLYERY 319 (601)
T ss_pred HhhhhhccCccCceeHHHHHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCHHHHHHHHHh
Confidence 0000 01445677889999999999888754443322 11 23478889999998666422100
Q ss_pred -------------------------h-------hhhcCC------------------------C-CCCCCeEEEEeeccc
Q psy12587 182 -------------------------I-------ENVLNP------------------------L-PGKEDIVFLSINRYE 204 (390)
Q Consensus 182 -------------------------~-------~~~~~~------------------------l-~~~~~~~i~~~g~~~ 204 (390)
+ +..+.+ + ...+.+.+++++|+.
T Consensus 320 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~v~Rl~ 399 (601)
T TIGR02094 320 LGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFARRFA 399 (601)
T ss_pred CCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEEEEEcch
Confidence 0 001100 0 123567899999999
Q ss_pred ccCCHHHHHHHHHHHHh--hcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH
Q psy12587 205 RKKNLELAIYSLNSLRS--RLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK 282 (390)
Q Consensus 205 ~~K~~~~ll~a~~~l~~--~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~ 282 (390)
.+||.+.++.++.++.+ ..|+ .+++|++.|.+.+.....+.+.+.+..++++...+++|.|+-..+..-...+++
T Consensus 400 ~yKr~dLil~~i~~l~~i~~~~~---~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~a 476 (601)
T TIGR02094 400 TYKRADLIFRDLERLARILNNPE---RPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVS 476 (601)
T ss_pred hhhhHHHHHHHHHHHHHHhhCCC---CCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhh
Confidence 99999999999888864 2211 138999999998877777788888988888755677899987777766688999
Q ss_pred hcceEEe-CCC-CCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeec------------C-CHHHHHHHHHHHh-
Q psy12587 283 FCHCIIY-TPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCE------------S-NEEAFAKAMKKIV- 346 (390)
Q Consensus 283 ~adv~v~-ps~-~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~------------~-~~~~l~~~i~~l~- 346 (390)
.||++++ ||. +|.+|++-+-||..|.+.+++-.|...|.. ++.||+.+. . |+++|.++|++.+
T Consensus 477 G~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~ 555 (601)
T TIGR02094 477 GVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVI 555 (601)
T ss_pred hheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccccccccccCCCHHHHHHHHHHHHH
Confidence 9999999 999 999999999999999999999888888876 567999997 5 8999999987655
Q ss_pred ----cC-----ChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy12587 347 ----DN-----DGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 347 ----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
++ |. .+.++.+++.......|||++++++|.+.|
T Consensus 556 ~~yy~~~~~~~p~-~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 556 PLYYDRDEKGIPA-DWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred HHHhcCCcccCcH-HHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 23 34 577777777766556899999999999876
No 94
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.83 E-value=2.4e-18 Score=154.67 Aligned_cols=309 Identities=11% Similarity=0.048 Sum_probs=182.0
Q ss_pred hh-HhhhhcCCceeec--C-Cccccc-cCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCCEEEEcc
Q psy12587 11 TA-TAWGATGPRTTAH--D-HCFKET-KDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPDLVFCDL 84 (390)
Q Consensus 11 ~l-~~L~~~G~~V~~~--~-~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dvi~~~~ 84 (390)
.+ ++|.++|++|.++ + ....+. ....+++..+.. ......+..+...++.+. ... .+++ .+||+|+.++
T Consensus 23 al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~v---~G~~~~l~~~~~~~~~~~-~~~-~~l~~~kPd~vi~~g 97 (385)
T TIGR00215 23 GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELSV---MGLREVLGRLGRLLKIRK-EVV-QLAKQAKPDLLVGID 97 (385)
T ss_pred HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhhh---ccHHHHHHHHHHHHHHHH-HHH-HHHHhcCCCEEEEeC
Confidence 88 9999999998887 2 222111 111122222210 000112222222222222 111 3455 9999999998
Q ss_pred cccchh-----HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCC
Q psy12587 85 VSICIP-----ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDH 159 (390)
Q Consensus 85 ~~~~~~-----~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~ 159 (390)
. .+++ .++..++|+++++ .|..|.+... ..+.+.+.+|.+++.++...+.+.+. .
T Consensus 98 ~-~~~~~~~a~aa~~~gip~v~~i-~P~~waw~~~-------------~~r~l~~~~d~v~~~~~~e~~~~~~~-----g 157 (385)
T TIGR00215 98 A-PDFNLTKELKKKDPGIKIIYYI-SPQVWAWRKW-------------RAKKIEKATDFLLAILPFEKAFYQKK-----N 157 (385)
T ss_pred C-CCccHHHHHHHhhCCCCEEEEe-CCcHhhcCcc-------------hHHHHHHHHhHhhccCCCcHHHHHhc-----C
Confidence 5 3322 2334459998766 4444333211 13455678999999999988887653 2
Q ss_pred CceeecCCCCCCCCCCC-CCccchhhhcCCCCCCCCeEEEEee-cccc-cCCHHHHHHHHHHHHhhcccccccceEEEEE
Q psy12587 160 KCLDILYPSVYTEGLEK-TTPEPIENVLNPLPGKEDIVFLSIN-RYER-KKNLELAIYSLNSLRSRLSDEMKTHVKLVVA 236 (390)
Q Consensus 160 ~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~~~g-~~~~-~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~ 236 (390)
.+..+++|++....... ......++.++ ++.+.+.++++.| |..+ .|++..+++++..+.+..|+ +++++.
T Consensus 158 ~~~~~vGnPv~~~~~~~~~~~~~~r~~lg-l~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~-----~~~vi~ 231 (385)
T TIGR00215 158 VPCRFVGHPLLDAIPLYKPDRKSAREKLG-IDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPD-----LRRVLP 231 (385)
T ss_pred CCEEEECCchhhhccccCCCHHHHHHHcC-CCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCC-----eEEEEE
Confidence 36677888874332211 12233444554 3443344444444 4444 68999999999999887775 887665
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC-
Q psy12587 237 GGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS- 315 (390)
Q Consensus 237 G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~- 315 (390)
+..... .+.+++..+.++....|.+.+. ++..+|+.||++|++| |.+.+|+|++|+|+|....
T Consensus 232 ~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~----~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~ 295 (385)
T TIGR00215 232 VVNFKR-------RLQFEQIKAEYGPDLQLHLIDG----DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYRM 295 (385)
T ss_pred eCCchh-------HHHHHHHHHHhCCCCcEEEECc----hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcC
Confidence 433211 1556666666665556665542 3467999999999998 7777899999999988731
Q ss_pred CCc----------------ccceecCcce-eee-cC-CHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhhhc
Q psy12587 316 GGP----------------KESVVDGRTG-FLC-ES-NEEAFAKAMKKIVDND----GNIIQQFSQFGFNRFNEKF 368 (390)
Q Consensus 316 ~~~----------------~e~i~~~~~g-~~~-~~-~~~~l~~~i~~l~~~~----~~~~~~~~~~~~~~~~~~~ 368 (390)
..+ +.++.+.... .+. .. +++.+++.+.++++|+ + .++++.+...+. .+..
T Consensus 296 ~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~-~~~~~~~~~~~~-~~~l 369 (385)
T TIGR00215 296 KPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYK-EMHRERQFFEEL-RQRI 369 (385)
T ss_pred CHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHH-HHHHHHHHHHHH-HHHh
Confidence 111 2222222211 112 33 7899999999999999 7 777776555444 2444
No 95
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.80 E-value=2.6e-19 Score=137.34 Aligned_cols=132 Identities=25% Similarity=0.343 Sum_probs=97.0
Q ss_pred CeEEEEeecccccCCHHHHHH-HHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 194 DIVFLSINRYERKKNLELAIY-SLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~-a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
-++|++.|++.+.|+++.+++ ++.++.++.|+ ++|+|+|.++ ++++++ ..++|.++|++
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~-----~~l~i~G~~~----------~~l~~~-----~~~~v~~~g~~ 61 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPD-----IELIIIGNGP----------DELKRL-----RRPNVRFHGFV 61 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTT-----EEEEEECESS-----------HHCCH-----HHCTEEEE-S-
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcC-----EEEEEEeCCH----------HHHHHh-----cCCCEEEcCCH
Confidence 467899999999999999999 99999999886 9999999965 334443 13689999999
Q ss_pred ChHHHHHHHHhcceEEeCCC-CCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcC
Q psy12587 273 SDAAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDN 348 (390)
Q Consensus 273 ~~~e~~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~ 348 (390)
+++.++++.||+++.|+. .+++|.+++|||++|+|||+++. +..++......|.++..|+++++++|.++++|
T Consensus 62 --~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 62 --EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp --HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred --HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 588999999999999985 67899999999999999999998 56666665566767633999999999999875
No 96
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=2.4e-15 Score=131.67 Aligned_cols=321 Identities=13% Similarity=0.056 Sum_probs=194.3
Q ss_pred CCcchhhhHhh-HhhhhcCCc-eeec--CCcc--ccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHH-HHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPR-TTAH--DHCF--KETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALY-VAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~-V~~~--~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 74 (390)
+||.-.....+ ++|.++|++ |.+. +... ......++.++.++....+.. ..+..+...++.+..... ..+++
T Consensus 10 TGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~il~ 88 (357)
T COG0707 10 TGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRK-GSLKLLKAPFKLLKGVLQARKILK 88 (357)
T ss_pred CccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEeccccccc-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888899 999999995 5555 2212 222233556666643222221 111223222332222222 14566
Q ss_pred -cCCCEEEEcccccchhHH---HhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 -EKPDLVFCDLVSICIPIL---QAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 -~~~Dvi~~~~~~~~~~~~---~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
.+||+|+..+...+.+.. ...++|++.+..+... ....++..+.|+.|.+.-+. .
T Consensus 89 ~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~-----------------G~ank~~~~~a~~V~~~f~~----~ 147 (357)
T COG0707 89 KLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVP-----------------GLANKILSKFAKKVASAFPK----L 147 (357)
T ss_pred HcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCc-----------------chhHHHhHHhhceeeecccc----c
Confidence 999999998865555443 4444888876665321 12224445667777765543 1
Q ss_pred HHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccc
Q psy12587 151 QATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTH 230 (390)
Q Consensus 151 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~ 230 (390)
.. ..+.+++.+..+++..+... .+....+... ..+...++++-|+.....--+.+.++...+.++
T Consensus 148 ~~---~~~~~~~~~tG~Pvr~~~~~-~~~~~~~~~~---~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~-------- 212 (357)
T COG0707 148 EA---GVKPENVVVTGIPVRPEFEE-LPAAEVRKDG---RLDKKTILVTGGSQGAKALNDLVPEALAKLANR-------- 212 (357)
T ss_pred cc---cCCCCceEEecCcccHHhhc-cchhhhhhhc---cCCCcEEEEECCcchhHHHHHHHHHHHHHhhhC--------
Confidence 12 22256799999999887766 3222222221 222444555555554444334444444455442
Q ss_pred eEE-EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 231 VKL-VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 231 ~~l-~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
+.+ +++|... . +++++...+++. +...++.++ |..+|+.||++|+=+ .++++.|..++|+|
T Consensus 213 ~~v~~~~G~~~-~--------~~~~~~~~~~~~---~~v~~f~~d--m~~~~~~ADLvIsRa----Ga~Ti~E~~a~g~P 274 (357)
T COG0707 213 IQVIHQTGKND-L--------EELKSAYNELGV---VRVLPFIDD--MAALLAAADLVISRA----GALTIAELLALGVP 274 (357)
T ss_pred eEEEEEcCcch-H--------HHHHHHHhhcCc---EEEeeHHhh--HHHHHHhccEEEeCC----cccHHHHHHHhCCC
Confidence 554 4455442 2 566666666554 778888876 589999999999644 56899999999999
Q ss_pred EEEecCCCc--------ccceecCcceeeecC---CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 310 VIAVNSGGP--------KESVVDGRTGFLCES---NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 310 vi~~~~~~~--------~e~i~~~~~g~~~~~---~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
+|--+.+.. ...+.+...|.+++. +++++.+.|.+++++++ ..++|.+++++.. ..-..+.+++...
T Consensus 275 ~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~-~l~~m~~~a~~~~-~p~aa~~i~~~~~ 352 (357)
T COG0707 275 AILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPE-KLKAMAENAKKLG-KPDAAERIADLLL 352 (357)
T ss_pred EEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHH-HHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 999765332 234455566777765 58899999999999988 9999999988776 4444444444444
Q ss_pred H
Q psy12587 379 T 379 (390)
Q Consensus 379 ~ 379 (390)
.
T Consensus 353 ~ 353 (357)
T COG0707 353 A 353 (357)
T ss_pred H
Confidence 3
No 97
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.73 E-value=5.6e-15 Score=134.16 Aligned_cols=297 Identities=13% Similarity=0.149 Sum_probs=179.3
Q ss_pred HHhh--cCCCEEEEcccccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccH
Q psy12587 71 AWYS--EKPDLVFCDLVSICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSE 144 (390)
Q Consensus 71 ~~~~--~~~Dvi~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~ 144 (390)
.+.+ ..-|+|++|+....+....+.. .++.+..|-|.+.... ++.+ . ....+ -..+-.||.|-+.+.
T Consensus 134 ~i~~~~~~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~e~----fr~l-P-~r~ei-L~glL~aDlIgFqt~ 206 (474)
T PF00982_consen 134 AIAEVYRPGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPFPSSEI----FRCL-P-WREEI-LRGLLGADLIGFQTF 206 (474)
T ss_dssp HHGGG--TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S----HHH----HTTS-T-THHHH-HHHHTTSSEEEESSH
T ss_pred HHHHhCcCCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCCCCHHH----HhhC-C-cHHHH-HHHhhcCCEEEEecH
Confidence 4455 7788999999776554433322 8888999976542211 1110 0 01111 222457899999999
Q ss_pred hHHHHHHHHhccC-----C-----------CCceeecCCCCCCCCCCCCC--------ccchhhhcCCCCCCCCeEEEEe
Q psy12587 145 FTKSVVQATFRSL-----D-----------HKCLDILYPSVYTEGLEKTT--------PEPIENVLNPLPGKEDIVFLSI 200 (390)
Q Consensus 145 ~~~~~~~~~~~~~-----~-----------~~~~~vi~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~i~~~ 200 (390)
..++.+....... . .-++.+.|-|||++.+.... ...+++.++ ++..+|+.+
T Consensus 207 ~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~----~~~~ii~gv 282 (474)
T PF00982_consen 207 EYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK----GKRKIIVGV 282 (474)
T ss_dssp HHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT----T-SEEEEEE
T ss_pred HHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC----CCcEEEEEe
Confidence 8888776532110 0 12367788899987665311 123444442 235889999
Q ss_pred ecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCC-CcchhHHHHHHHHHHHHc----CC---CCcEEEecCC
Q psy12587 201 NRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPH-NIENVEYYKELGVLVKKL----KL---SDNVLFLTSP 272 (390)
Q Consensus 201 g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~-~~~~~~y~~~~~~~~~~~----~l---~~~v~~~g~~ 272 (390)
.|++..||+..=+.|+.++.+++|+ ...++.|+-++..... ....+.+..++.+++.+. |- .+-+.+.+.+
T Consensus 283 Drld~~kGi~~kl~Afe~fL~~~P~-~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~ 361 (474)
T PF00982_consen 283 DRLDYTKGIPEKLRAFERFLERYPE-YRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSL 361 (474)
T ss_dssp --B-GGG-HHHHHHHHHHHHHH-GG-GTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S--
T ss_pred ccchhhcCHHHHHHHHHHHHHhCcC-ccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCC
Confidence 9999999999999999999999996 4457888777753322 122345556666666543 32 2234456679
Q ss_pred ChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC----EEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 273 SDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP----VIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 273 ~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p----vi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
+.+++..+|+.||+++.+|..+|+.++..|+.+|..+ +|.|...|..+.+.+ ..++++| |.+++|++|.++++
T Consensus 362 ~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~--~al~VNP~d~~~~A~ai~~AL~ 439 (474)
T PF00982_consen 362 SFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSE--AALLVNPWDIEEVADAIHEALT 439 (474)
T ss_dssp -HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TT--S-EEE-TT-HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHcCC--ccEEECCCChHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999765 777888888887743 3489999 99999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 348 NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
.+.++++...+..++.+ ..++...+++.+++-++
T Consensus 440 M~~~Er~~r~~~~~~~v-~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 440 MPPEERKERHARLREYV-REHDVQWWAESFLRDLK 473 (474)
T ss_dssp --HHHHHHHHHHHHHHH-HHT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh-HhCCHHHHHHHHHHHhh
Confidence 99867777777778877 78999999999988765
No 98
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.72 E-value=6.7e-16 Score=138.87 Aligned_cols=305 Identities=16% Similarity=0.174 Sum_probs=172.7
Q ss_pred EEEEcccccchhHHHhh--c--ccEEEEeecCCccccc---hhhhhhhh------------cccchhhHHHHHhcCcceE
Q psy12587 79 LVFCDLVSICIPILQAK--Q--FKVLFYCHYPDQLLSK---QGSFLKSI------------YRFPLNKLEEWTTCKADKI 139 (390)
Q Consensus 79 vi~~~~~~~~~~~~~~~--~--~~~v~~~h~~~~~~~~---~~~~~~~~------------~~~~~~~~~~~~~~~ad~i 139 (390)
+.|+|.|.+++.++.+. . +..|+|.|..-.-..- ...+...+ --.-...+|+.+...||.+
T Consensus 146 iaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l~~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iEraaA~~AdvF 225 (633)
T PF05693_consen 146 IAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYLAANNKDFYNNLDKFNGDQEAGERNIYHKHSIERAAAHYADVF 225 (633)
T ss_dssp EEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHHTTTSS-TTTSGTTS-HHHHHHHTT-HHHHHHHHHHHHHSSEE
T ss_pred EEEechHhHhHHHHHHhccCCCeeEEEEecccchhhHhhcCCCcHHHHhhccCccccccCccchHHHHHHHHHHHhcCee
Confidence 33777787665544433 3 8899999953211000 00000000 0001236788889999999
Q ss_pred EEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCc---------cch----hhh-cCC--CCCCCCeEEEEeecc
Q psy12587 140 VVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTP---------EPI----ENV-LNP--LPGKEDIVFLSINRY 203 (390)
Q Consensus 140 i~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---------~~~----~~~-~~~--l~~~~~~~i~~~g~~ 203 (390)
.++|+-++.+....++ ..+-.|+|||++.+.++.... ..+ +.. ++. +..++.+.|...||.
T Consensus 226 TTVSeITa~Ea~~LL~---r~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d~tl~~ftsGRY 302 (633)
T PF05693_consen 226 TTVSEITAKEAEHLLK---RKPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLDKTLYFFTSGRY 302 (633)
T ss_dssp EESSHHHHHHHHHHHS---S--SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GGGEEEEEEESSS
T ss_pred eehhhhHHHHHHHHhC---CCCCEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCccceEEEEeeece
Confidence 9999999999998776 346688999999988776532 111 111 111 122356788899999
Q ss_pred c-ccCCHHHHHHHHHHHHhhccc-cc-ccceEEEEEcCCCCCC----cchhH----------------------------
Q psy12587 204 E-RKKNLELAIYSLNSLRSRLSD-EM-KTHVKLVVAGGYDPHN----IENVE---------------------------- 248 (390)
Q Consensus 204 ~-~~K~~~~ll~a~~~l~~~~~~-~~-~~~~~l~i~G~~~~~~----~~~~~---------------------------- 248 (390)
+ .+||+|.+|+|+.+|...... .. ..=+-|+|+-...... ..++.
T Consensus 303 Ef~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~~~~~~~~~~~ 382 (633)
T PF05693_consen 303 EFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGKRLFESCLSGR 382 (633)
T ss_dssp -TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred eeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7 799999999999988543210 00 0013355544332210 00000
Q ss_pred ---------------------------------------HHHHHHHHHHHcCC----CCc--EEEecC-CC------hHH
Q psy12587 249 ---------------------------------------YYKELGVLVKKLKL----SDN--VLFLTS-PS------DAA 276 (390)
Q Consensus 249 ---------------------------------------y~~~~~~~~~~~~l----~~~--v~~~g~-~~------~~e 276 (390)
-.+.+...++++++ .++ |.|++. ++ +.+
T Consensus 383 ~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~ 462 (633)
T PF05693_consen 383 LPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLD 462 (633)
T ss_dssp S-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S---TTSSSS-S-
T ss_pred CCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeeccccCCCCCCCCC
Confidence 11222233333333 123 344432 21 235
Q ss_pred HHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceec-----CcceeeecC----CH----HHHHHHHH
Q psy12587 277 KISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD-----GRTGFLCES----NE----EAFAKAMK 343 (390)
Q Consensus 277 ~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~-----~~~g~~~~~----~~----~~l~~~i~ 343 (390)
..+++..||+.|+||.+|+||.+.+|+.++|+|.|+|+..|+...+.+ ...|+.+-. +. +++++.|.
T Consensus 463 Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~ 542 (633)
T PF05693_consen 463 YYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLY 542 (633)
T ss_dssp HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHH
T ss_pred HHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999888655543 335655522 44 45555555
Q ss_pred HHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhh
Q psy12587 344 KIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDK 387 (390)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
++......++..++.++.+.. +..+|+.+...|.+.++-++++
T Consensus 543 ~f~~~~~rqri~~Rn~ae~LS-~~~dW~~~~~yY~~Ay~~AL~~ 585 (633)
T PF05693_consen 543 KFCQLSRRQRIIQRNRAERLS-DLADWKNFGKYYEKAYDLALRR 585 (633)
T ss_dssp HHHT--HHHHHHHHHHHHHHG-GGGBHHHHCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHh
Confidence 555555436777777776665 8999999999999999887765
No 99
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.72 E-value=9.2e-15 Score=130.96 Aligned_cols=295 Identities=9% Similarity=0.120 Sum_probs=207.2
Q ss_pred cCCCEEEEcccccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
..-|+|++|+....+....+.. .++-++.|-|.+.... ++.+-. ...+ -..+-.+|.|-+.+...++.+
T Consensus 122 ~~~D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPFPs~ei----fr~LP~--r~ei-l~glL~aDlIGFqt~~y~rnF 194 (474)
T PRK10117 122 KDDDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPTPEI----FNALPP--HDEL-LEQLCDYDLLGFQTENDRLAF 194 (474)
T ss_pred CCCCEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCCCChHH----HhhCCC--hHHH-HHHHHhCccceeCCHHHHHHH
Confidence 4458999999876554433332 7888999976542221 111100 0111 122446899999998888777
Q ss_pred HHHhcc---C------------CCCceeecCCCCCCCCCCCCCc-------cchhhhcCCCCCCCCeEEEEeecccccCC
Q psy12587 151 QATFRS---L------------DHKCLDILYPSVYTEGLEKTTP-------EPIENVLNPLPGKEDIVFLSINRYERKKN 208 (390)
Q Consensus 151 ~~~~~~---~------------~~~~~~vi~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~i~~~g~~~~~K~ 208 (390)
.+.... . ..-++.+.|-|||++.+..... ..+++.+ .++.+|+.+.|++..||
T Consensus 195 l~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~-----~~~~lilgVDRLDytKG 269 (474)
T PRK10117 195 LDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAEL-----KNVQNIFSVERLDYSKG 269 (474)
T ss_pred HHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHc-----CCCeEEEEecccccccC
Confidence 753211 0 0123667788999877654221 1223332 25678899999999999
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCC-CCcchhHHHHHHHHHHHHc----CC---CCcEEEecCCChHHHHHH
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDP-HNIENVEYYKELGVLVKKL----KL---SDNVLFLTSPSDAAKISL 280 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~-~~~~~~~y~~~~~~~~~~~----~l---~~~v~~~g~~~~~e~~~~ 280 (390)
+..=+.|+..+.+++|+ ...++.|+-+....- ...+.+++..++++++.+. |- .+-..+...++.+++..+
T Consensus 270 i~~rl~Afe~fL~~~Pe-~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~al 348 (474)
T PRK10117 270 LPERFLAYEALLEKYPQ-HHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKI 348 (474)
T ss_pred HHHHHHHHHHHHHhChh-hcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHH
Confidence 99999999999999996 445677776653321 1222345556666666553 21 122333466899999999
Q ss_pred HHhcceEEeCCCCCCCCccHHhhhhcCC-----CEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHH
Q psy12587 281 FKFCHCIIYTPSNEHFGIVPIEAMFCKR-----PVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQ 354 (390)
Q Consensus 281 ~~~adv~v~ps~~e~~~~~~~Ea~a~G~-----pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~ 354 (390)
|+.||+++.++..||+.++..|+.+|.. ++|.|...|..+.+. ..++++| |.++++++|.+.++.+.++++
T Consensus 349 yr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~---~AllVNP~d~~~~A~Ai~~AL~Mp~~Er~ 425 (474)
T PRK10117 349 FRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYDRDEVAAALDRALTMPLAERI 425 (474)
T ss_pred HHhccEEEecccccccccccchheeeecCCCCccEEEecccchHHHhC---CCeEECCCCHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999976 378899888887773 4689999 999999999999999986777
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 355 QFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
+.-+..++.+ ..++...+++.+++-+..+..
T Consensus 426 ~R~~~l~~~v-~~~dv~~W~~~fL~~L~~~~~ 456 (474)
T PRK10117 426 SRHAEMLDVI-VKNDINHWQECFISDLKQIVP 456 (474)
T ss_pred HHHHHHHHHh-hhCCHHHHHHHHHHHHHHhhh
Confidence 7767777777 789999999999998877643
No 100
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.71 E-value=8e-15 Score=139.29 Aligned_cols=305 Identities=14% Similarity=0.113 Sum_probs=213.7
Q ss_pred cCCCEEEEcccccchhHH-----Hh-------------hcccEEEEeecCCccc--cchhhhhhhh--------------
Q psy12587 75 EKPDLVFCDLVSICIPIL-----QA-------------KQFKVLFYCHYPDQLL--SKQGSFLKSI-------------- 120 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~-----~~-------------~~~~~v~~~h~~~~~~--~~~~~~~~~~-------------- 120 (390)
.+||+||+|.+++++... .+ .+..+++|+|++.... ........+.
T Consensus 247 ~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~~~ 326 (778)
T cd04299 247 IKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSRDR 326 (778)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCHHH
Confidence 689999999987766444 11 1267899999875433 1111111110
Q ss_pred -c---ccc------hhhHHHHHhcCcceEEEccHhHHHHHHHH----hccCC--CCceeecCCCCCCCCCC-CC------
Q psy12587 121 -Y---RFP------LNKLEEWTTCKADKIVVNSEFTKSVVQAT----FRSLD--HKCLDILYPSVYTEGLE-KT------ 177 (390)
Q Consensus 121 -~---~~~------~~~~~~~~~~~ad~ii~~s~~~~~~~~~~----~~~~~--~~~~~vi~~~~~~~~~~-~~------ 177 (390)
. ... .-.+.+..+..|+.+.++|+-..+..++. +++.+ ..++.-|-|||+...+. +.
T Consensus 327 ~~~lg~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~~~~i~~ITNGVh~~~W~~P~~~~l~~ 406 (778)
T cd04299 327 FLALGRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPVEEVPIGHVTNGVHVPTWVAPEMRELYD 406 (778)
T ss_pred HhhhccccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcccCceeceeCCcchhhhcCHHHHHHHH
Confidence 0 000 01445677899999999999875444443 33332 23688899999887665 11
Q ss_pred -----------------------Cc-----------cchhhhc---------------------CCCCCCCCeEEEEeec
Q psy12587 178 -----------------------TP-----------EPIENVL---------------------NPLPGKEDIVFLSINR 202 (390)
Q Consensus 178 -----------------------~~-----------~~~~~~~---------------------~~l~~~~~~~i~~~g~ 202 (390)
+. ..+.+.+ +..-+.+.+++++++|
T Consensus 407 ~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~ltigfarR 486 (778)
T cd04299 407 RYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGFARR 486 (778)
T ss_pred HhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCccEEeeeec
Confidence 00 0000010 0001124568999999
Q ss_pred ccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH
Q psy12587 203 YERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK 282 (390)
Q Consensus 203 ~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~ 282 (390)
+..+|+.++++..+.++.+-..+ ....+.|++.|.+.+....++.+.+.+.++++....+++|.|+...+-.-...+++
T Consensus 487 fa~YKR~~Lil~dl~rl~~il~~-~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~lA~~Lva 565 (778)
T cd04299 487 FATYKRATLLLRDPERLKRLLND-PERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMALARHLVQ 565 (778)
T ss_pred chhhhhHHHHHHHHHHHHHHhhC-CCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHHHHHHHh
Confidence 99999999999998877541100 00139999999999887777888888888888666678999988777766688999
Q ss_pred hcceEEeCCC--CCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-------------CHHHHHHHHHHH--
Q psy12587 283 FCHCIIYTPS--NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-------------NEEAFAKAMKKI-- 345 (390)
Q Consensus 283 ~adv~v~ps~--~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-------------~~~~l~~~i~~l-- 345 (390)
.||+.+.||. .|.+|++=+-||..|.+-+++--|...|.. ++.||+.+.+ ++++|.+.+++.
T Consensus 566 G~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~i~ 644 (778)
T cd04299 566 GVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDAEEAEALYDLLENEVI 644 (778)
T ss_pred hhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcchhhHHHHHHHHHHHHH
Confidence 9999999999 899999999999999999999988888877 7789999864 345555666442
Q ss_pred --hcC------ChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 346 --VDN------DGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 346 --~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
.-+ |. .+.+|.+++...+...|||++++++|.+-+-
T Consensus 645 p~yy~r~~~g~p~-~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 645 PLFYDRDEGGYPP-GWVAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred HHHhcCCCCCCCH-HHHHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 223 56 6888888887777789999999999987553
No 101
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.68 E-value=6.1e-14 Score=135.94 Aligned_cols=301 Identities=14% Similarity=0.149 Sum_probs=208.0
Q ss_pred HHhh-cCC--CEEEEcccccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEcc
Q psy12587 71 AWYS-EKP--DLVFCDLVSICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNS 143 (390)
Q Consensus 71 ~~~~-~~~--Dvi~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s 143 (390)
.+.+ .++ |+|++|++...+....+++ .++-++.|-|.+..... +.+ ..+.-.-..+-.||.|-+.+
T Consensus 193 ~v~~~~~~~~d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~eif----r~L---P~r~eiL~glL~aDlIGFht 265 (854)
T PLN02205 193 RIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIY----KTL---PIREELLRALLNSDLIGFHT 265 (854)
T ss_pred HHHHHhCCCCCEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCCCChHHH----hhC---CcHHHHHHHHhcCCeEEecC
Confidence 3445 555 8999999876554433333 78889999765422111 110 01111122245789999999
Q ss_pred HhHHHHHHHHhc---cC---------------CCCceeecCCCCCCCCCCCCCc--------cchhhhcCCCCCCCCeEE
Q psy12587 144 EFTKSVVQATFR---SL---------------DHKCLDILYPSVYTEGLEKTTP--------EPIENVLNPLPGKEDIVF 197 (390)
Q Consensus 144 ~~~~~~~~~~~~---~~---------------~~~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~i 197 (390)
...+..+.+... +. ..-++.+.|-|||...+..... ..+++.+ ...++.+|
T Consensus 266 ~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~i 342 (854)
T PLN02205 266 FDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQF---CDQDRIML 342 (854)
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHh---ccCCCEEE
Confidence 888887776211 11 0124667888999887654211 1223333 22257889
Q ss_pred EEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCC-CCcchhHHHHHHHHHHHHc----C---CCCcEEEe
Q psy12587 198 LSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDP-HNIENVEYYKELGVLVKKL----K---LSDNVLFL 269 (390)
Q Consensus 198 ~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~-~~~~~~~y~~~~~~~~~~~----~---l~~~v~~~ 269 (390)
+.+.|+...||+..=+.|+.++.+++|+ ...++.|+.+..... ...+.+++..++.+.+.+. | ..+-+.+.
T Consensus 343 lgVDrlD~~KGi~~kl~A~e~~L~~~P~-~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~ 421 (854)
T PLN02205 343 LGVDDMDIFKGISLKLLAMEQLLMQHPE-WQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLID 421 (854)
T ss_pred EEccCcccccCHHHHHHHHHHHHHhCcc-ccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEe
Confidence 9999999999999999999999999996 334566766653322 2223345555666666543 2 22323444
Q ss_pred cCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC-------------------CEEEecCCCcccceecCcceee
Q psy12587 270 TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR-------------------PVIAVNSGGPKESVVDGRTGFL 330 (390)
Q Consensus 270 g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~-------------------pvi~~~~~~~~e~i~~~~~g~~ 330 (390)
..++.+|+..+|+.||+++.++..+|+.++..|+.+|.. .+|.|...|....+. ..++
T Consensus 422 ~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~---~Ai~ 498 (854)
T PLN02205 422 APLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS---GAIR 498 (854)
T ss_pred cCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC---cCeE
Confidence 679999999999999999999999999999999999864 367788777766662 3689
Q ss_pred ecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 331 CES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 331 ~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
++| |.++++++|.+.++.+.++++..-+..++.+ ..++...+++.++.-++++.+
T Consensus 499 VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v-~~~d~~~W~~~fl~~l~~~~~ 554 (854)
T PLN02205 499 VNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYV-STHDVGYWARSFLQDLERTCR 554 (854)
T ss_pred ECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999998756666666777777 789999999999988877654
No 102
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.68 E-value=3.6e-14 Score=125.93 Aligned_cols=293 Identities=11% Similarity=0.026 Sum_probs=165.0
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecC--Cccc-c-ccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHH-HHhh-
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHD--HCFK-E-TKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYV-AWYS- 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~--~~~~-~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 74 (390)
+||.-.-...+ ++|.++||+|.+++ ...+ + ....++.+..+... +......+..+...++.....+.. .+++
T Consensus 11 TGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 89 (352)
T PRK12446 11 SAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSG-KLRRYFDLKNIKDPFLVMKGVMDAYVRIRK 89 (352)
T ss_pred cHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEecc-CcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777888 99999999998882 2211 1 22334555555321 111111222222322222222211 3456
Q ss_pred cCCCEEEEcccccc---hhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHH
Q psy12587 75 EKPDLVFCDLVSIC---IPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQ 151 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~---~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 151 (390)
.+||+|+.+....+ ..++++.++|++++..+... ....+.+.+.++.+++.-+...
T Consensus 90 ~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~-----------------g~~nr~~~~~a~~v~~~f~~~~---- 148 (352)
T PRK12446 90 LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTP-----------------GLANKIALRFASKIFVTFEEAA---- 148 (352)
T ss_pred cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCc-----------------cHHHHHHHHhhCEEEEEccchh----
Confidence 99999999986554 34556666888765443211 1233455677888877654332
Q ss_pred HHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCH-HHHHHHHHHHHhhcccccccc
Q psy12587 152 ATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNL-ELAIYSLNSLRSRLSDEMKTH 230 (390)
Q Consensus 152 ~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~-~~ll~a~~~l~~~~~~~~~~~ 230 (390)
+.++ .+++.++.+++..+..... ....++.++ +..+.+.++++-|+... +.+ +.+.+++..+.+.
T Consensus 149 ~~~~---~~k~~~tG~Pvr~~~~~~~-~~~~~~~~~-l~~~~~~iLv~GGS~Ga-~~in~~~~~~l~~l~~~-------- 214 (352)
T PRK12446 149 KHLP---KEKVIYTGSPVREEVLKGN-REKGLAFLG-FSRKKPVITIMGGSLGA-KKINETVREALPELLLK-------- 214 (352)
T ss_pred hhCC---CCCeEEECCcCCccccccc-chHHHHhcC-CCCCCcEEEEECCccch-HHHHHHHHHHHHhhccC--------
Confidence 2222 4688899999887654322 223333333 33434455555565543 334 3333444444322
Q ss_pred eEE-EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 231 VKL-VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 231 ~~l-~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
+++ +++|.... ++.. ... +++...+++. +++.++|+.||++|.-+ .++++.|++++|+|
T Consensus 215 ~~vv~~~G~~~~---------~~~~---~~~---~~~~~~~f~~-~~m~~~~~~adlvIsr~----G~~t~~E~~~~g~P 274 (352)
T PRK12446 215 YQIVHLCGKGNL---------DDSL---QNK---EGYRQFEYVH-GELPDILAITDFVISRA----GSNAIFEFLTLQKP 274 (352)
T ss_pred cEEEEEeCCchH---------HHHH---hhc---CCcEEecchh-hhHHHHHHhCCEEEECC----ChhHHHHHHHcCCC
Confidence 444 45564321 2211 111 2334456652 45689999999999643 57789999999999
Q ss_pred EEEecCCC---------cccceecCcceeeecC---CHHHHHHHHHHHhcCCh
Q psy12587 310 VIAVNSGG---------PKESVVDGRTGFLCES---NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 310 vi~~~~~~---------~~e~i~~~~~g~~~~~---~~~~l~~~i~~l~~~~~ 350 (390)
.|..+... ..+.+.+...+..+.. +++.+.+++.++++|++
T Consensus 275 ~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~ 327 (352)
T PRK12446 275 MLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNE 327 (352)
T ss_pred EEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHH
Confidence 99986431 1123334445555532 78999999999998876
No 103
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.8e-13 Score=120.87 Aligned_cols=297 Identities=11% Similarity=0.127 Sum_probs=208.1
Q ss_pred HHhh--cCCCEEEEcccccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccH
Q psy12587 71 AWYS--EKPDLVFCDLVSICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSE 144 (390)
Q Consensus 71 ~~~~--~~~Dvi~~~~~~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~ 144 (390)
.+.+ .+=|+|++|+....+....+.. .++.++.|-|.+.... ++-+- .+.-.-..+-.||.|-+.++
T Consensus 140 ~i~~~~~~gDiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPssEv----fr~lP---~r~eIl~gll~~dligFqt~ 212 (486)
T COG0380 140 KIVEIYEPGDIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPSSEV----FRCLP---WREEILEGLLGADLIGFQTE 212 (486)
T ss_pred HHHHhcCCCCEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCCHHH----HhhCc---hHHHHHHHhhcCCeeEecCH
Confidence 3444 5669999999765554333322 7888888876542211 11100 01111122557899999999
Q ss_pred hHHHHHHHHhccCC----------------CCceeecCCCCCCCCCCCCCc--------cchhhhcCCCCCCCCeEEEEe
Q psy12587 145 FTKSVVQATFRSLD----------------HKCLDILYPSVYTEGLEKTTP--------EPIENVLNPLPGKEDIVFLSI 200 (390)
Q Consensus 145 ~~~~~~~~~~~~~~----------------~~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~i~~~ 200 (390)
..+..+........ ..++..+|-|+|+..+..... ..+++.+ . ++..+|+.+
T Consensus 213 ~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~---~-~~~kiivgv 288 (486)
T COG0380 213 SYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAEL---G-RNKKLIVGV 288 (486)
T ss_pred HHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHh---c-CCceEEEEe
Confidence 88888776533221 135677888999887764321 1222322 2 247888999
Q ss_pred ecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCc-chhHHHHHHHHHHHHc-------CCCCcEEEecCC
Q psy12587 201 NRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNI-ENVEYYKELGVLVKKL-------KLSDNVLFLTSP 272 (390)
Q Consensus 201 g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~-~~~~y~~~~~~~~~~~-------~l~~~v~~~g~~ 272 (390)
.|++..||+..=+.|+.++..++|+ ...++.++-++....... +.+.+..+++..+.+. +..+-..+.-.+
T Consensus 289 DRlDy~kGi~~rl~Afe~lL~~~Pe-~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~ 367 (486)
T COG0380 289 DRLDYSKGIPQRLLAFERLLEEYPE-WRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDL 367 (486)
T ss_pred hhcccccCcHHHHHHHHHHHHhChh-hhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccC
Confidence 9999999999999999999999986 445677777775443321 1123444455544433 233444556669
Q ss_pred ChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcC----CCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 273 SDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCK----RPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 273 ~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G----~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
+..++..+|+.||+++.++..||+.++..|+.+|. =|.|-|...|....+.+ .++++| |.++++++|.+.++
T Consensus 368 ~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d~~~va~ai~~AL~ 444 (486)
T COG0380 368 DRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWDTKEVADAIKRALT 444 (486)
T ss_pred CHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999999999984 47788888777776644 689999 99999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 348 NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
.+.+++++.-+..++.+ ..++...++..+++-+..
T Consensus 445 m~~eEr~~r~~~~~~~v-~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 445 MSLEERKERHEKLLKQV-LTHDVARWANSFLDDLAQ 479 (486)
T ss_pred CCHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHh
Confidence 99867777667777777 789999999998887764
No 104
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.66 E-value=4.1e-14 Score=127.44 Aligned_cols=192 Identities=11% Similarity=0.132 Sum_probs=144.1
Q ss_pred cCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHH
Q psy12587 134 CKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAI 213 (390)
Q Consensus 134 ~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll 213 (390)
.+.|.||+.++...+.+.++++. ..++.++|-|+-.. ++. ....+..+++++. +..|
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~~--~~~~~~ip~g~i~~-~~~-------------~~r~~~~~l~~t~-------s~~I 294 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLDN--EYQEQISQLGYLYP-FKK-------------DNKYRKQALILTN-------SDQI 294 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhCc--ccCceEEEEEEEEe-ecc-------------ccCCcccEEEECC-------HHHH
Confidence 57799999999988888887763 35778888776422 111 1112334455551 8999
Q ss_pred HHHHHHHhhcccccccceEEEEEcCCCC-CCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCC
Q psy12587 214 YSLNSLRSRLSDEMKTHVKLVVAGGYDP-HNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS 292 (390)
Q Consensus 214 ~a~~~l~~~~~~~~~~~~~l~i~G~~~~-~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~ 292 (390)
+++..+.+..|+ ++|.| |.+.. . +++.++ .++ +++..++......+.++|..||+++..+.
T Consensus 295 ~~i~~Lv~~lPd-----~~f~I-ga~te~s--------~kL~~L-~~y---~nvvly~~~~~~~l~~ly~~~dlyLdin~ 356 (438)
T TIGR02919 295 EHLEEIVQALPD-----YHFHI-AALTEMS--------SKLMSL-DKY---DNVKLYPNITTQKIQELYQTCDIYLDINH 356 (438)
T ss_pred HHHHHHHHhCCC-----cEEEE-EecCccc--------HHHHHH-Hhc---CCcEEECCcChHHHHHHHHhccEEEEccc
Confidence 999999999996 99999 76665 3 778777 666 44544444444556899999999999999
Q ss_pred CCCCCccHHhhhhcCCCEEEecCC-CcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCH
Q psy12587 293 NEHFGIVPIEAMFCKRPVIAVNSG-GPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSF 370 (390)
Q Consensus 293 ~e~~~~~~~Ea~a~G~pvi~~~~~-~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (390)
.|++++++.||++.|+||++.+.. +..+++.+ |.+++. ++++++++|.+++++++ .+++.-...++.+ ..-+.
T Consensus 357 ~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d~~-~~~~~~~~q~~~a-~~~~~ 431 (438)
T TIGR02919 357 GNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLNDPN-QFRELLEQQREHA-NDISK 431 (438)
T ss_pred cccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHh-ccCCH
Confidence 999999999999999999998864 55577655 788888 99999999999999998 6666555555554 34444
Q ss_pred H
Q psy12587 371 Q 371 (390)
Q Consensus 371 ~ 371 (390)
+
T Consensus 432 ~ 432 (438)
T TIGR02919 432 E 432 (438)
T ss_pred H
Confidence 4
No 105
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.66 E-value=1.2e-13 Score=124.29 Aligned_cols=268 Identities=13% Similarity=0.069 Sum_probs=165.5
Q ss_pred CCCEEEEcccccchhHHHhhcccEEE-EeecCCccccc-hhhhhhhhcccchhhH------HHHHhcCcceEEEccHhHH
Q psy12587 76 KPDLVFCDLVSICIPILQAKQFKVLF-YCHYPDQLLSK-QGSFLKSIYRFPLNKL------EEWTTCKADKIVVNSEFTK 147 (390)
Q Consensus 76 ~~Dvi~~~~~~~~~~~~~~~~~~~v~-~~h~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~ad~ii~~s~~~~ 147 (390)
+||+|++.+....+.++++.++|+++ -.|..+..... ........+.++.... .+...+.|+.+++..+...
T Consensus 93 ~p~~v~~~Gg~v~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~~a~~v~~~~~~t~ 172 (396)
T TIGR03492 93 KGDLIVAVGDIVPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMRSRRCLAVFVRDRLTA 172 (396)
T ss_pred cCCEEEEECcHHHHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHHHHHHhhchhhCEEeCCCHHHH
Confidence 99999999976666777777877665 34543332111 1111111112111111 3555678999999999988
Q ss_pred HHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccc--ccCCHHHHHHHHHHHHhhccc
Q psy12587 148 SVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYE--RKKNLELAIYSLNSLRSRLSD 225 (390)
Q Consensus 148 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~~~~ 225 (390)
+.+.+. ..++.++.|++-....... .. . ++.+.+.+++..|+-. ..+++..+++++..+.++ ++
T Consensus 173 ~~l~~~-----g~k~~~vGnPv~d~l~~~~-~~----~---l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~-~~ 238 (396)
T TIGR03492 173 RDLRRQ-----GVRASYLGNPMMDGLEPPE-RK----P---LLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDS-QP 238 (396)
T ss_pred HHHHHC-----CCeEEEeCcCHHhcCcccc-cc----c---cCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhC-CC
Confidence 888764 2489999998744432211 11 1 2333455666666653 346778999999999765 43
Q ss_pred ccccceEEEEEc-CCCCCCcchhHHHHHHHHHHHHcCCC--------------CcEEEecCCChHHHHHHHHhcceEEeC
Q psy12587 226 EMKTHVKLVVAG-GYDPHNIENVEYYKELGVLVKKLKLS--------------DNVLFLTSPSDAAKISLFKFCHCIIYT 290 (390)
Q Consensus 226 ~~~~~~~l~i~G-~~~~~~~~~~~y~~~~~~~~~~~~l~--------------~~v~~~g~~~~~e~~~~~~~adv~v~p 290 (390)
+.+++.- +.... +.+++..++.++. +++.+..+. .++..+|+.||++|..
T Consensus 239 -----~~~v~~~~~~~~~--------~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~ADlvI~r 303 (396)
T TIGR03492 239 -----FVFLAAIVPSLSL--------EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGR--GAFAEILHWADLGIAM 303 (396)
T ss_pred -----eEEEEEeCCCCCH--------HHHHHHHHhcCceecCCccccchhhccCceEEEech--HhHHHHHHhCCEEEEC
Confidence 6665543 23222 5666666655543 125555443 4568999999999987
Q ss_pred CCCCCCCccHHhhhhcCCCEEEecCCCc---ccceecC----cceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q psy12587 291 PSNEHFGIVPIEAMFCKRPVIAVNSGGP---KESVVDG----RTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFN 362 (390)
Q Consensus 291 s~~e~~~~~~~Ea~a~G~pvi~~~~~~~---~e~i~~~----~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 362 (390)
| |.+..|++++|+|+|..+..+. ..+.+.. ..+..+.. +++.+++++.++++|++ .+++|.+++++
T Consensus 304 S-----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~-~~~~~~~~~~~ 377 (396)
T TIGR03492 304 A-----GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPE-LLERCRRNGQE 377 (396)
T ss_pred c-----CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHH-HHHHHHHHHHH
Confidence 5 6667999999999999874322 1222220 13344444 88999999999999988 78788755544
Q ss_pred HHhhhcCHHHHHHHHH
Q psy12587 363 RFNEKFSFQAFSIQLN 378 (390)
Q Consensus 363 ~~~~~~~~~~~~~~~~ 378 (390)
...+....+.+++.+.
T Consensus 378 ~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 378 RMGPPGASARIAESIL 393 (396)
T ss_pred hcCCCCHHHHHHHHHH
Confidence 4434444555554443
No 106
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.64 E-value=1.3e-15 Score=122.50 Aligned_cols=164 Identities=19% Similarity=0.207 Sum_probs=86.3
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCCE
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPDL 79 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv 79 (390)
.||+|+++.+| ++|+++||+|+++.....+..... ...................+ ..... ...+++ .+||+
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~i~~~~~Di 83 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE-LVKIFVKIPYPIRKRFLRSF-FFMRR-----LRRLIKKEKPDI 83 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST-EEEE---TT-SSTSS--HHH-HHHHH-----HHHHHHHHT-SE
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh-ccceeeeeecccccccchhH-HHHHH-----HHHHHHHcCCCe
Confidence 69999999999 999999999999822222221111 11111111101111111111 11111 112445 89999
Q ss_pred EEEcccccchhH-HHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCC
Q psy12587 80 VFCDLVSICIPI-LQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLD 158 (390)
Q Consensus 80 i~~~~~~~~~~~-~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~ 158 (390)
||+|........ ....++|++++.|+.... .............+...+++..++.+|.++++|+.+++.+.+ ++ .+
T Consensus 84 Vh~~~~~~~~~~~~~~~~~~~v~~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~-~~-~~ 160 (177)
T PF13439_consen 84 VHIHGPPAFWIALLACRKVPIVYTIHGPYFE-RRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELIK-FG-IP 160 (177)
T ss_dssp EECCTTHCCCHHHHHHHCSCEEEEE-HHH---HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHHH-HT---
T ss_pred EEecccchhHHHHHhccCCCEEEEeCCCccc-ccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHHH-hC-Cc
Confidence 999985543322 222279999999985421 000011111222223344556689999999999999999999 65 54
Q ss_pred CCceeecCCCCCCCCCC
Q psy12587 159 HKCLDILYPSVYTEGLE 175 (390)
Q Consensus 159 ~~~~~vi~~~~~~~~~~ 175 (390)
++++.+||||+|.+.|.
T Consensus 161 ~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 161 PEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp SS-EEE----B-CCCH-
T ss_pred ccCCEEEECCccHHHcC
Confidence 78999999999998763
No 107
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.61 E-value=2.5e-15 Score=106.36 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=86.2
Q ss_pred eEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Q psy12587 286 CIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFN 365 (390)
Q Consensus 286 v~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 365 (390)
+++.|+..++++..++|+||||+|+|+++.+++.+++.++..++.++ |++++.+++..+++|++ .++++++++++.+.
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~-~~~el~~~i~~ll~~~~-~~~~ia~~a~~~v~ 78 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN-DPEELAEKIEYLLENPE-ERRRIAKNARERVL 78 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC-CHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
Confidence 45778888999999999999999999999999999999998999999 99999999999999999 99999999999999
Q ss_pred hhcCHHHHHHHHHH
Q psy12587 366 EKFSFQAFSIQLNT 379 (390)
Q Consensus 366 ~~~~~~~~~~~~~~ 379 (390)
++|+|+..++++++
T Consensus 79 ~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 79 KRHTWEHRAEQILE 92 (92)
T ss_pred HhCCHHHHHHHHHC
Confidence 99999999998863
No 108
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.60 E-value=3e-15 Score=118.32 Aligned_cols=149 Identities=15% Similarity=0.105 Sum_probs=82.7
Q ss_pred CcchhhhHhh-HhhhhcCCceeec----CCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHh--h-
Q psy12587 3 GATARLTITA-TAWGATGPRTTAH----DHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWY--S- 74 (390)
Q Consensus 3 GG~~~~~~~l-~~L~~~G~~V~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 74 (390)
||+++++.+| ++|.++||+|+++ .....+....++.+..++..........+..+..+ ..++ +
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~ 71 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRL---------RRLLAARR 71 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGGHCCHHHHH---------HHHCHHCT
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhhhhHHHHHHH---------HHHHhhhc
Confidence 8999999999 9999999999988 12222233455666666422211111111111111 1233 4
Q ss_pred cCCCEEEEcccccchhHH--H-hhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHH
Q psy12587 75 EKPDLVFCDLVSICIPIL--Q-AKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQ 151 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~--~-~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 151 (390)
.+||+||++++...+... + ..++|+|+++|+.... .. ..+...+..++++.+++.||.++++|+.+++.+.
T Consensus 72 ~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~--~~----~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~ 145 (160)
T PF13579_consen 72 ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHGTLFR--RG----SRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLR 145 (160)
T ss_dssp ---SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS-T------------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHH
T ss_pred cCCeEEEecccchhHHHHHHHHccCCcEEEEECCCchh--hc----cchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHH
Confidence 999999999964333222 2 3349999999974321 11 2222333467788999999999999999999999
Q ss_pred HHhccCCCCceeecCCC
Q psy12587 152 ATFRSLDHKCLDILYPS 168 (390)
Q Consensus 152 ~~~~~~~~~~~~vi~~~ 168 (390)
+ ++ .+.+++.|||||
T Consensus 146 ~-~g-~~~~ri~vipnG 160 (160)
T PF13579_consen 146 R-YG-VPPDRIHVIPNG 160 (160)
T ss_dssp H-H----GGGEEE----
T ss_pred H-hC-CCCCcEEEeCcC
Confidence 9 44 557899999997
No 109
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=4.1e-12 Score=109.94 Aligned_cols=271 Identities=14% Similarity=0.134 Sum_probs=177.5
Q ss_pred cCCCEEEEcc---cccchhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHH
Q psy12587 75 EKPDLVFCDL---VSICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQ 151 (390)
Q Consensus 75 ~~~Dvi~~~~---~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 151 (390)
.+||+++... |+..+.-.+..++|.++.---.. ....+++. ..+.+.+.++++.|.|++.|+..++.+.
T Consensus 122 ~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS------~rS~~~y~--k~~~~~~~~~~~i~li~aQse~D~~Rf~ 193 (419)
T COG1519 122 WRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS------DRSFARYA--KLKFLARLLFKNIDLILAQSEEDAQRFR 193 (419)
T ss_pred cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec------hhhhHHHH--HHHHHHHHHHHhcceeeecCHHHHHHHH
Confidence 7999988766 44444444555677765322100 01111111 1235667778899999999999999998
Q ss_pred HHhccCCCCceeecCCC-CCCCCCC--CCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccc
Q psy12587 152 ATFRSLDHKCLDILYPS-VYTEGLE--KTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 152 ~~~~~~~~~~~~vi~~~-~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
+. |. .++.+..|- .|.+.-+ .......+..++ . .+.+++..+.. ...-+.++++++.++++.|+
T Consensus 194 ~L--Ga--~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~---~-~r~v~iaaSTH--~GEeei~l~~~~~l~~~~~~--- 260 (419)
T COG1519 194 SL--GA--KPVVVTGNLKFDIEPPPQLAAELAALRRQLG---G-HRPVWVAASTH--EGEEEIILDAHQALKKQFPN--- 260 (419)
T ss_pred hc--CC--cceEEecceeecCCCChhhHHHHHHHHHhcC---C-CCceEEEecCC--CchHHHHHHHHHHHHhhCCC---
Confidence 86 33 457777763 2221111 111133444442 2 26666776662 22345589999999999985
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCC-------------cEEEecCCChHHHHHHHHhcceEEeC-CCCC
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSD-------------NVLFLTSPSDAAKISLFKFCHCIIYT-PSNE 294 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~-------------~v~~~g~~~~~e~~~~~~~adv~v~p-s~~e 294 (390)
..++++-..+++ .+.+.+++++.|+.- +|.+.. +-.|+..+|..||+.++. |..+
T Consensus 261 --~llIlVPRHpER-------f~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~D--tmGEL~l~y~~adiAFVGGSlv~ 329 (419)
T COG1519 261 --LLLILVPRHPER-------FKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGD--TMGELGLLYGIADIAFVGGSLVP 329 (419)
T ss_pred --ceEEEecCChhh-------HHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEe--cHhHHHHHHhhccEEEECCcccC
Confidence 999999988765 378889999887631 222211 125789999999987665 5566
Q ss_pred CCCccHHhhhhcCCCEEEecC-C---CcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCH
Q psy12587 295 HFGIVPIEAMFCKRPVIAVNS-G---GPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSF 370 (390)
Q Consensus 295 ~~~~~~~Ea~a~G~pvi~~~~-~---~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (390)
..|-.++|+.++|+|||..+. - ...+.+...+.|+.++ |.+.+++++..+++|++ .++++++++.+.+.++
T Consensus 330 ~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~-~~~~l~~~v~~l~~~~~-~r~~~~~~~~~~v~~~--- 404 (419)
T COG1519 330 IGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE-DADLLAKAVELLLADED-KREAYGRAGLEFLAQN--- 404 (419)
T ss_pred CCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC-CHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHh---
Confidence 678899999999999999653 2 3333344556788888 78888888888888877 9999999999988543
Q ss_pred HHHHHHHHHHHH
Q psy12587 371 QAFSIQLNTIVN 382 (390)
Q Consensus 371 ~~~~~~~~~~~~ 382 (390)
....++..+.++
T Consensus 405 ~gal~r~l~~l~ 416 (419)
T COG1519 405 RGALARTLEALK 416 (419)
T ss_pred hHHHHHHHHHhh
Confidence 223444444443
No 110
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.42 E-value=2.4e-11 Score=107.51 Aligned_cols=282 Identities=16% Similarity=0.164 Sum_probs=150.2
Q ss_pred cchhhhHhh-HhhhhcCCceeec--CCccccccCCCcceEEecccccccc---chhhHHHHHHH---HHHHHHH--HHHH
Q psy12587 4 ATARLTITA-TAWGATGPRTTAH--DHCFKETKDGTLPVKVIGDWLPRNI---FGKFYALCMYL---RMIVIAL--YVAW 72 (390)
Q Consensus 4 G~~~~~~~l-~~L~~~G~~V~~~--~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~--~~~~ 72 (390)
|.-.++..+ ++| +||+|+++ +... +.....+.+..++....... ........... ....... ...+
T Consensus 13 GH~~R~~~la~~L--rg~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (318)
T PF13528_consen 13 GHASRCLALARAL--RGHEVTFITSGPAP-EFLKPRFPVREIPGLGPIQENGRLDRWKTVRNNIRWLARLARRIRREIRW 89 (318)
T ss_pred CHHHHHHHHHHHH--ccCceEEEEcCCcH-HHhccccCEEEccCceEeccCCccchHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 667788889 999 48999988 3222 22221133333322211111 11111111111 1111111 1245
Q ss_pred hh-cCCCEEEEcccccchhHHHhhcccEEEEeecCCccccc-hhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 73 YS-EKPDLVFCDLVSICIPILQAKQFKVLFYCHYPDQLLSK-QGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 73 ~~-~~~Dvi~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
++ .+||+|++...+....+++..++|+|...|..+..... .......+...+.+...+..+..++..+..+-...
T Consensus 90 l~~~~pDlVIsD~~~~~~~aa~~~giP~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 166 (318)
T PF13528_consen 90 LREFRPDLVISDFYPLAALAARRAGIPVIVISNQYWFLHPNFWLPWDQDFGRLIERYIDRYHFPPADRRLALSFYPP--- 166 (318)
T ss_pred HHhcCCCEEEEcChHHHHHHHHhcCCCEEEEEehHHcccccCCcchhhhHHHHHHHhhhhccCCcccceecCCcccc---
Confidence 56 99999999987666667777789999888854332101 00000111111111111111334444444432200
Q ss_pred HHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccc
Q psy12587 151 QATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTH 230 (390)
Q Consensus 151 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~ 230 (390)
.....+..+++..+........ +.+.+.+++++|..... .++++++.+. +
T Consensus 167 -----~~~~~~~~~~~p~~~~~~~~~~------------~~~~~~iLv~~gg~~~~----~~~~~l~~~~----~----- 216 (318)
T PF13528_consen 167 -----LPPFFRVPFVGPIIRPEIRELP------------PEDEPKILVYFGGGGPG----DLIEALKALP----D----- 216 (318)
T ss_pred -----ccccccccccCchhcccccccC------------CCCCCEEEEEeCCCcHH----HHHHHHHhCC----C-----
Confidence 0001223333333222211111 22466788999987544 5666666643 2
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCc-cHHhhhhcCCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGI-VPIEAMFCKRP 309 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~-~~~Ea~a~G~p 309 (390)
..++++|..... .. .++|.+.++. ..++.++|+.||++|.-+ |. ++.||+++|+|
T Consensus 217 ~~~~v~g~~~~~--------~~----------~~ni~~~~~~-~~~~~~~m~~ad~vIs~~-----G~~t~~Ea~~~g~P 272 (318)
T PF13528_consen 217 YQFIVFGPNAAD--------PR----------PGNIHVRPFS-TPDFAELMAAADLVISKG-----GYTTISEALALGKP 272 (318)
T ss_pred CeEEEEcCCccc--------cc----------CCCEEEeecC-hHHHHHHHHhCCEEEECC-----CHHHHHHHHHcCCC
Confidence 678888765321 00 4789988764 255689999999999644 44 59999999999
Q ss_pred EEEecCCCccc------ceecCcceeeec--C-CHHHHHHHHHHH
Q psy12587 310 VIAVNSGGPKE------SVVDGRTGFLCE--S-NEEAFAKAMKKI 345 (390)
Q Consensus 310 vi~~~~~~~~e------~i~~~~~g~~~~--~-~~~~l~~~i~~l 345 (390)
+|+-+..+..| .+++.+.|..++ . +++.+.+.|+++
T Consensus 273 ~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 273 ALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred EEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 99988755444 234445566654 3 788888888764
No 111
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.41 E-value=1.2e-10 Score=104.02 Aligned_cols=267 Identities=13% Similarity=0.077 Sum_probs=153.4
Q ss_pred Hhh-cCCCEEEEcccc-cc---hhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhH
Q psy12587 72 WYS-EKPDLVFCDLVS-IC---IPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFT 146 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~-~~---~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 146 (390)
+++ .+||+|++++-. .. ..++...++|++ ++|+...-... .. ....+.+-+.|+..+++++..
T Consensus 88 ~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~-HveaG~rs~~~----~e-------E~~r~~i~~la~l~f~~t~~~ 155 (365)
T TIGR03568 88 AFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIA-HIHGGEVTEGA----ID-------ESIRHAITKLSHLHFVATEEY 155 (365)
T ss_pred HHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEE-EEECCccCCCC----ch-------HHHHHHHHHHHhhccCCCHHH
Confidence 344 999999999843 22 233445558876 56643221110 00 111122344578888999999
Q ss_pred HHHHHHHhccCCCCceeecCCC-CCCCCC-CCCCccchhhhcCCCCCCCCeEEEEeeccc--ccCCHHHHHHHHHHHHhh
Q psy12587 147 KSVVQATFRSLDHKCLDILYPS-VYTEGL-EKTTPEPIENVLNPLPGKEDIVFLSINRYE--RKKNLELAIYSLNSLRSR 222 (390)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vi~~~-~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~ 222 (390)
++.+.+. +.++.++.++.|. +|.-.. .........+.++ ++.+.+++++.+-+-. .....+.+.+.++.+.+.
T Consensus 156 ~~~L~~e--g~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lg-l~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~ 232 (365)
T TIGR03568 156 RQRVIQM--GEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLG-IDLDKPYALVTFHPVTLEKESAEEQIKELLKALDEL 232 (365)
T ss_pred HHHHHHc--CCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhC-CCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHh
Confidence 9988775 4546788888885 443211 1112233444443 3322356555554432 223334444444444333
Q ss_pred cccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCC-CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHH
Q psy12587 223 LSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKL-SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPI 301 (390)
Q Consensus 223 ~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l-~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~ 301 (390)
.. ++.++.-..++.. ..+.+.+.++.- .+++.+.+.++..++..+++.|++++..| +..+-
T Consensus 233 ~~-----~~~vi~P~~~p~~--------~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdS-----Sggi~ 294 (365)
T TIGR03568 233 NK-----NYIFTYPNADAGS--------RIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNS-----SSGII 294 (365)
T ss_pred cc-----CCEEEEeCCCCCc--------hHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcC-----hhHHH
Confidence 22 2433222222221 233333333211 36899999999999999999999999544 22348
Q ss_pred hhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy12587 302 EAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTI 380 (390)
Q Consensus 302 Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
||.++|+|+|+- +.-+|.+..+.+.+.+..|++++.+++.+++ ++. .+..+. .....|.....++++.++
T Consensus 295 EA~~lg~Pvv~l--~~R~e~~~~g~nvl~vg~~~~~I~~a~~~~~-~~~-~~~~~~-----~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 295 EAPSFGVPTINI--GTRQKGRLRADSVIDVDPDKEEIVKAIEKLL-DPA-FKKSLK-----NVKNPYGDGNSSERIIEI 364 (365)
T ss_pred hhhhcCCCEEee--cCCchhhhhcCeEEEeCCCHHHHHHHHHHHh-ChH-HHHHHh-----hCCCCCCCChHHHHHHHh
Confidence 999999999964 4566777777777777559999999999954 434 333331 122446555566666554
No 112
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.40 E-value=1.9e-10 Score=104.69 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=77.4
Q ss_pred CCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCc----ccceecCcceeeecC---C
Q psy12587 262 LSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGP----KESVVDGRTGFLCES---N 334 (390)
Q Consensus 262 l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~----~e~i~~~~~g~~~~~---~ 334 (390)
+++++.+.++++.. ++|..||++|..+ ...++.||+++|+|+|+....+- .+.+.+.+.|..+.. +
T Consensus 273 ~~~~v~~~~~~p~~---~ll~~~~~~I~hg----G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~ 345 (392)
T TIGR01426 273 LPPNVEVRQWVPQL---EILKKADAFITHG----GMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVT 345 (392)
T ss_pred CCCCeEEeCCCCHH---HHHhhCCEEEECC----CchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCC
Confidence 35789999999875 5789999999644 23579999999999999664322 233444456666643 7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy12587 335 EEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 335 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
.++++++|.+++++++ .++++.+- ++.+...-..+..++.+.+++
T Consensus 346 ~~~l~~ai~~~l~~~~-~~~~~~~l-~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 346 AEKLREAVLAVLSDPR-YAERLRKM-RAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHHHHHHhcCHH-HHHHHHHH-HHHHHHcCCHHHHHHHHHHhh
Confidence 8999999999999887 66555433 333334556666666665543
No 113
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.39 E-value=8.4e-11 Score=100.16 Aligned_cols=216 Identities=10% Similarity=0.038 Sum_probs=150.9
Q ss_pred ceEEEccHhH-HHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHH
Q psy12587 137 DKIVVNSEFT-KSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYS 215 (390)
Q Consensus 137 d~ii~~s~~~-~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a 215 (390)
|.|++.++.. ++.+.+... ..++..+|.++|.+.+.+.++.. .-.--+.++|+..+. ..+.+-+.
T Consensus 140 d~v~~~g~~l~~~~yyq~~~---~~~~~~~~~a~d~~~~~~i~~da----------~~~~dL~~ign~~pD-r~e~~ke~ 205 (373)
T COG4641 140 DNVLSFGGGLVANKYYQEGG---ARNCYYLPWAVDDSLFHPIPPDA----------SYDVDLNLIGNPYPD-RVEEIKEF 205 (373)
T ss_pred hhhhhccchHHHHHHHHhhc---ccceeccCccCCchhcccCCccc----------cceeeeEEecCCCcc-HHHHHHHH
Confidence 4466666665 555554433 57899999999999888764321 123357788887655 22332232
Q ss_pred HHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCCh-HHHHHHHHhcceEEeCCC--
Q psy12587 216 LNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSD-AAKISLFKFCHCIIYTPS-- 292 (390)
Q Consensus 216 ~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~-~e~~~~~~~adv~v~ps~-- 292 (390)
+..-..+... +-++...|...+. .+.. ....+++...|+++. ..+...++..|+.+.-++
T Consensus 206 ~~~ps~kl~v----~rr~~~~g~~y~~---------~~~~----~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~ 268 (373)
T COG4641 206 FVEPSFKLMV----DRRFYVLGPRYPD---------DIWG----RTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRAS 268 (373)
T ss_pred hhccchhhhc----cceeeecCCccch---------hhhc----ccccchhhhhhccCccchhhhcccccceeeeecHHH
Confidence 2221111110 1345566654221 1111 111357778888766 788899999999887654
Q ss_pred -CCC---CCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhc
Q psy12587 293 -NEH---FGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKF 368 (390)
Q Consensus 293 -~e~---~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
.++ +.+.++|+++||.|.+++...++..++.+|..-++.. |.+++.+.+..++..++ .++++.+.+++.+...|
T Consensus 269 ~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~-d~kdl~~~~~yll~h~~-erkeiae~~ye~V~~~h 346 (373)
T COG4641 269 IANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQ-DSKDLKEKLKYLLNHPD-ERKEIAECAYERVLARH 346 (373)
T ss_pred HHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEec-CHHHHHHHHHHHhcCcc-hHHHHHHhhHHHHHHhc
Confidence 222 2678999999999999999999999998888766666 99999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q psy12587 369 SFQAFSIQLNTIVNNML 385 (390)
Q Consensus 369 ~~~~~~~~~~~~~~~~~ 385 (390)
+.+.-+..+++.+.++.
T Consensus 347 t~~~r~~~~~~~i~sI~ 363 (373)
T COG4641 347 TYEERIFKLLNEIASIN 363 (373)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999988888877643
No 114
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.37 E-value=1.9e-10 Score=101.14 Aligned_cols=302 Identities=12% Similarity=0.129 Sum_probs=174.9
Q ss_pred hhhhHhh-HhhhhcCCceeec---CCccccccCCCcceEEe-ccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCCE
Q psy12587 6 ARLTITA-TAWGATGPRTTAH---DHCFKETKDGTLPVKVI-GDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPDL 79 (390)
Q Consensus 6 ~~~~~~l-~~L~~~G~~V~~~---~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv 79 (390)
..+...| ++|.++.-++.++ |..... .|+..... ...--.....-+..+..+++.. .... ..++ .+||+
T Consensus 11 D~~ga~Li~~Lk~~~p~~~~~GvGG~~M~~---~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~-~~~~-~~~~~~~pd~ 85 (373)
T PF02684_consen 11 DLHGARLIRALKARDPDIEFYGVGGPRMQA---AGVESLFDMEELSVMGFVEVLKKLPKLKRLF-RKLV-ERIKEEKPDV 85 (373)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEechHHHh---CCCceecchHHhhhccHHHHHHHHHHHHHHH-HHHH-HHHHHcCCCE
Confidence 3466788 9999988777776 222222 22222211 1100011111122222222221 1111 2334 99999
Q ss_pred EEEcc-cccchhHHHhhc---cc--EEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHH
Q psy12587 80 VFCDL-VSICIPILQAKQ---FK--VLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQAT 153 (390)
Q Consensus 80 i~~~~-~~~~~~~~~~~~---~~--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 153 (390)
++.-+ +.+.+.+++..+ ++ +|+++ .|..|.+.... .+.+-+.+|.+++.=++..+.+.+.
T Consensus 86 vIlID~pgFNlrlak~lk~~~~~~~viyYI-~PqvWAWr~~R-------------~~~i~~~~D~ll~ifPFE~~~y~~~ 151 (373)
T PF02684_consen 86 VILIDYPGFNLRLAKKLKKRGIPIKVIYYI-SPQVWAWRPGR-------------AKKIKKYVDHLLVIFPFEPEFYKKH 151 (373)
T ss_pred EEEeCCCCccHHHHHHHHHhCCCceEEEEE-CCceeeeCccH-------------HHHHHHHHhheeECCcccHHHHhcc
Confidence 88766 666777766554 44 65554 35554443211 1333456799999999999988885
Q ss_pred hccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccc--ccCCHHHHHHHHHHHHhhcccccccce
Q psy12587 154 FRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYE--RKKNLELAIYSLNSLRSRLSDEMKTHV 231 (390)
Q Consensus 154 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~~~~~~~~~~ 231 (390)
+ -++..+.|++-...-........++.+ ++.+++.+.+..|+=. -.+.+..++++++.+.+++|+ +
T Consensus 152 --g---~~~~~VGHPl~d~~~~~~~~~~~~~~~--l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~-----l 219 (373)
T PF02684_consen 152 --G---VPVTYVGHPLLDEVKPEPDRAEAREKL--LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPD-----L 219 (373)
T ss_pred --C---CCeEEECCcchhhhccCCCHHHHHHhc--CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCC-----e
Confidence 2 478888888533222222222333332 3555677777888643 245668889999999999986 8
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEE
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVI 311 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi 311 (390)
++++...... ..+.+++.....+..-.+... ..+..+.|+.||+.+..| |++.+|++.+|+|.|
T Consensus 220 ~fvvp~a~~~-------~~~~i~~~~~~~~~~~~~~~~----~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~V 283 (373)
T PF02684_consen 220 QFVVPVAPEV-------HEELIEEILAEYPPDVSIVII----EGESYDAMAAADAALAAS-----GTATLEAALLGVPMV 283 (373)
T ss_pred EEEEecCCHH-------HHHHHHHHHHhhCCCCeEEEc----CCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEE
Confidence 8888764432 113355555554432223221 123368999999999876 999999999999988
Q ss_pred EecC-C----------------CcccceecCc--ceeeecC-CHHHHHHHHHHHhcCChhHHHH
Q psy12587 312 AVNS-G----------------GPKESVVDGR--TGFLCES-NEEAFAKAMKKIVDNDGNIIQQ 355 (390)
Q Consensus 312 ~~~~-~----------------~~~e~i~~~~--~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~ 355 (390)
+.-. + +++.++-+.. .-++-+. +++.+++++..+++|++ .++.
T Consensus 284 v~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~-~~~~ 346 (373)
T PF02684_consen 284 VAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPE-KRKK 346 (373)
T ss_pred EEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHH-HHHH
Confidence 7432 2 2222221111 1122234 89999999999999987 5333
No 115
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.36 E-value=2.3e-11 Score=107.46 Aligned_cols=267 Identities=14% Similarity=0.106 Sum_probs=147.0
Q ss_pred cCCCEEEEcccccch----hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 EKPDLVFCDLVSICI----PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~----~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
.+||+|++++-.... .++...++| |.++|+.-.-.....+.... .....+-+.|+..++.++..++.+
T Consensus 66 ~~Pd~Vlv~GD~~~~la~alaA~~~~ip-v~HieaGlRs~d~~~g~~de-------~~R~~i~~la~lhf~~t~~~~~~L 137 (346)
T PF02350_consen 66 EKPDAVLVLGDRNEALAAALAAFYLNIP-VAHIEAGLRSGDRTEGMPDE-------INRHAIDKLAHLHFAPTEEARERL 137 (346)
T ss_dssp HT-SEEEEETTSHHHHHHHHHHHHTT-E-EEEES-----S-TTSSTTHH-------HHHHHHHHH-SEEEESSHHHHHHH
T ss_pred cCCCEEEEEcCCchHHHHHHHHHHhCCC-EEEecCCCCccccCCCCchh-------hhhhhhhhhhhhhccCCHHHHHHH
Confidence 999999999854322 333444588 56777531100000011111 222334556899999999999999
Q ss_pred HHHhccCCCCceeecCCC-CCCCCCC-CCCccch-h-hhcCCCCCCCCeEEEEeeccccc---CCHHHHHHHHHHHHhhc
Q psy12587 151 QATFRSLDHKCLDILYPS-VYTEGLE-KTTPEPI-E-NVLNPLPGKEDIVFLSINRYERK---KNLELAIYSLNSLRSRL 223 (390)
Q Consensus 151 ~~~~~~~~~~~~~vi~~~-~~~~~~~-~~~~~~~-~-~~~~~l~~~~~~~i~~~g~~~~~---K~~~~ll~a~~~l~~~~ 223 (390)
.+. +.+++++.++.|. +|.-... +...... . .... ...+++++++.-+.... .....+.++++.+.+.
T Consensus 138 ~~~--G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~--~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~- 212 (346)
T PF02350_consen 138 LQE--GEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQ--DAPKPYILVTLHPVTNEDNPERLEQILEALKALAER- 212 (346)
T ss_dssp HHT--T--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHH--CTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-
T ss_pred Hhc--CCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHh--ccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-
Confidence 996 5667899999986 3322111 0111111 0 1100 12356666666554432 3467788888888776
Q ss_pred ccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHH-h
Q psy12587 224 SDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPI-E 302 (390)
Q Consensus 224 ~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~-E 302 (390)
+ ++.+++.....+ .....+.+..+++ +++.+...++..++..+++.|+++|--| | .+. |
T Consensus 213 ~-----~~~vi~~~hn~p------~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~eE 272 (346)
T PF02350_consen 213 Q-----NVPVIFPLHNNP------RGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQEE 272 (346)
T ss_dssp T-----TEEEEEE--S-H------HHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESS-----H-HHHHH
T ss_pred C-----CCcEEEEecCCc------hHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHHHH
Confidence 3 377777765332 2225565555555 3899999999999999999999999654 4 666 9
Q ss_pred hhhcCCCEEEec-CCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy12587 303 AMFCKRPVIAVN-SGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 303 a~a~G~pvi~~~-~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
|.++|+|+|.-. .+.-.+....+.+-+ +..|.+++.+++.+++++.. .+.++.. ....|.-...++++.+++
T Consensus 273 a~~lg~P~v~iR~~geRqe~r~~~~nvl-v~~~~~~I~~ai~~~l~~~~-~~~~~~~-----~~npYgdG~as~rI~~~L 345 (346)
T PF02350_consen 273 APSLGKPVVNIRDSGERQEGRERGSNVL-VGTDPEAIIQAIEKALSDKD-FYRKLKN-----RPNPYGDGNASERIVEIL 345 (346)
T ss_dssp GGGGT--EEECSSS-S-HHHHHTTSEEE-ETSSHHHHHHHHHHHHH-HH-HHHHHHC-----S--TT-SS-HHHHHHHHH
T ss_pred HHHhCCeEEEecCCCCCHHHHhhcceEE-eCCCHHHHHHHHHHHHhChH-HHHhhcc-----CCCCCCCCcHHHHHHHhh
Confidence 999999999974 455666666665544 65699999999999998744 4444321 123455555666666655
No 116
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.33 E-value=4.4e-11 Score=93.77 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=104.0
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCc--cccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-c
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHC--FKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-E 75 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (390)
.||.|+++.+| ..|.++||+|+|+ ... .....-.++.+..++. + ..+....+...+..+..++.....+ .
T Consensus 16 YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~--~--~~g~~~si~yd~~sl~~al~~~~~~~~ 91 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPA--P--KNGSAESIIYDFLSLLHALRFIKQDKI 91 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCC--C--CCCchHHHHHHHHHHHHHHHHHhhccc
Confidence 69999999999 9999999999998 222 2233335555665532 1 1222222222222222222111111 4
Q ss_pred CCCEEEEcccc---cchhHHHhhc---ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 76 KPDLVFCDLVS---ICIPILQAKQ---FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 76 ~~Dvi~~~~~~---~~~~~~~~~~---~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
+.|+++++... +.+++.+..+ .|+++..|+.++....++.+. +..++.-|+.+.+.||.+|+-|+...++
T Consensus 92 ~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR~KW~~~~----k~~lk~~E~~avk~ad~lIaDs~~I~~y 167 (185)
T PF09314_consen 92 KYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLEWKRAKWGRPA----KKYLKFSEKLAVKYADRLIADSKGIQDY 167 (185)
T ss_pred cCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcchhhhhhcCHHH----HHHHHHHHHHHHHhCCEEEEcCHHHHHH
Confidence 68899998854 2334444432 589999999876544444433 4445688899999999999999999999
Q ss_pred HHHHhccCCCCceeecCCCCC
Q psy12587 150 VQATFRSLDHKCLDILYPSVY 170 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~ 170 (390)
+.+.|+ ..++.+|++|.|
T Consensus 168 ~~~~y~---~~~s~~IaYGad 185 (185)
T PF09314_consen 168 IKERYG---RKKSTFIAYGAD 185 (185)
T ss_pred HHHHcC---CCCcEEecCCCC
Confidence 999987 468999999865
No 117
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.33 E-value=3.4e-10 Score=103.54 Aligned_cols=134 Identities=15% Similarity=0.139 Sum_probs=87.4
Q ss_pred CCCeEEEEeeccccc---CCHHHHHHHHHHHHhhcccccccceE-EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEE
Q psy12587 192 KEDIVFLSINRYERK---KNLELAIYSLNSLRSRLSDEMKTHVK-LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVL 267 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~---K~~~~ll~a~~~l~~~~~~~~~~~~~-l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~ 267 (390)
+++.+++..|+.... +-...+++++..+ . .+ ++.+|..... . ..++++|.
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~----~------~~~i~~~g~~~~~--------~--------~~~~~~v~ 291 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATL----G------QRAILSLGWGGLG--------A--------EDLPDNVR 291 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc----C------CeEEEEccCcccc--------c--------cCCCCceE
Confidence 466777888887542 2334445555443 1 33 4455544321 1 23468999
Q ss_pred EecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccceecCcceeeecC---CHHHHHH
Q psy12587 268 FLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVVDGRTGFLCES---NEEAFAK 340 (390)
Q Consensus 268 ~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~~~~~g~~~~~---~~~~l~~ 340 (390)
+.++++.. .+|..||++|. .|...++.||+++|+|+|+.+..+ ..+.+...+.|..+.. +.+++.+
T Consensus 292 ~~~~~p~~---~ll~~~d~~I~----hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~ 364 (401)
T cd03784 292 VVDFVPHD---WLLPRCAAVVH----HGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAA 364 (401)
T ss_pred EeCCCCHH---HHhhhhheeee----cCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHH
Confidence 99999866 57899999994 234579999999999999987643 2334445556766644 6899999
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q psy12587 341 AMKKIVDNDGNIIQQFSQFG 360 (390)
Q Consensus 341 ~i~~l~~~~~~~~~~~~~~~ 360 (390)
++.++++++ .+++..+.+
T Consensus 365 al~~~l~~~--~~~~~~~~~ 382 (401)
T cd03784 365 ALRRLLDPP--SRRRAAALL 382 (401)
T ss_pred HHHHHhCHH--HHHHHHHHH
Confidence 999999843 344444333
No 118
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=4.8e-09 Score=90.47 Aligned_cols=281 Identities=18% Similarity=0.139 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhhcCCCEEEEcccccchh----HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCc
Q psy12587 61 LRMIVIALYVAWYSEKPDLVFCDLVSICIP----ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKA 136 (390)
Q Consensus 61 ~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~----~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 136 (390)
.......+...+.+.+||+|.+|+-..... ++...++|+....-+.-..... +.. ....+..-.-|
T Consensus 77 t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~~---~PE-------E~NR~l~~~~S 146 (383)
T COG0381 77 TGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDLY---FPE-------EINRRLTSHLS 146 (383)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCCCC---CcH-------HHHHHHHHHhh
Confidence 333333333323339999999998433222 2233347765433332111100 000 01112334458
Q ss_pred ceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCC----CCccchhhh-cCCCCCCCCeEEEEeeccccc-CCHH
Q psy12587 137 DKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEK----TTPEPIENV-LNPLPGKEDIVFLSINRYERK-KNLE 210 (390)
Q Consensus 137 d~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~-~~~l~~~~~~~i~~~g~~~~~-K~~~ 210 (390)
|.-+++++..++.+.+. +.+.+++.++.|.+-...... ......... +. ..+++.+++..-|-... +++.
T Consensus 147 ~~hfapte~ar~nLl~E--G~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~--~~~~~~iLvT~HRreN~~~~~~ 222 (383)
T COG0381 147 DLHFAPTEIARKNLLRE--GVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLD--DKDKKYILVTAHRRENVGEPLE 222 (383)
T ss_pred hhhcCChHHHHHHHHHc--CCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhc--cccCcEEEEEcchhhcccccHH
Confidence 89999999999999986 666778999999842211111 111111111 22 34456777777776543 8999
Q ss_pred HHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHH-HHcCCCCcEEEecCCChHHHHHHHHhcceEEe
Q psy12587 211 LAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLV-KKLKLSDNVLFLTSPSDAAKISLFKFCHCIIY 289 (390)
Q Consensus 211 ~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~-~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ 289 (390)
.+++++.++.+++++ +.++.--. +. +.+++.. ..++-.++|.++.++...++..+++.|.+++-
T Consensus 223 ~i~~al~~i~~~~~~-----~~viyp~H-~~---------~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~ilt 287 (383)
T COG0381 223 EICEALREIAEEYPD-----VIVIYPVH-PR---------PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILT 287 (383)
T ss_pred HHHHHHHHHHHhCCC-----ceEEEeCC-CC---------hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEe
Confidence 999999999998764 55544332 22 3444444 45555578999999999999999999987775
Q ss_pred CCCCCCCCccHHhhhhcCCCEEEecC-CCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhc
Q psy12587 290 TPSNEHFGIVPIEAMFCKRPVIAVNS-GGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKF 368 (390)
Q Consensus 290 ps~~e~~~~~~~Ea~a~G~pvi~~~~-~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
-| |...=||-.+|+||++-.. ..-+|.++.| +-.++..+.+.+.+++..++++++ .+++|+... ..|
T Consensus 288 DS-----GgiqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg~~~~~i~~~~~~ll~~~~-~~~~m~~~~-----npY 355 (383)
T COG0381 288 DS-----GGIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVGTDEENILDAATELLEDEE-FYERMSNAK-----NPY 355 (383)
T ss_pred cC-----CchhhhHHhcCCcEEeeccCCCCccceecC-ceEEeCccHHHHHHHHHHHhhChH-HHHHHhccc-----CCC
Confidence 44 6677899999999999654 5566766444 445555589999999999999999 888886533 344
Q ss_pred CHHHHHHHHHHHHH
Q psy12587 369 SFQAFSIQLNTIVN 382 (390)
Q Consensus 369 ~~~~~~~~~~~~~~ 382 (390)
.-....+++.+++.
T Consensus 356 gdg~as~rIv~~l~ 369 (383)
T COG0381 356 GDGNASERIVEILL 369 (383)
T ss_pred cCcchHHHHHHHHH
Confidence 44444455555544
No 119
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=99.25 E-value=1.4e-08 Score=84.82 Aligned_cols=271 Identities=11% Similarity=0.083 Sum_probs=168.4
Q ss_pred cCCCEEEEccc-ccchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 75 EKPDLVFCDLV-SICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 75 ~~~Dvi~~~~~-~~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
.+.+-+++|+. ...+..+.+.+ .++.|++.+-|.+ ....++. .++...+.+.+.++..+|++ +......
T Consensus 38 ~r~~rff~HGqFn~~lwlall~g~~~~~q~yWhiWGaDLY-e~~~~lk----~rlfy~lRR~aq~rvg~v~a-trGD~~~ 111 (322)
T PRK02797 38 NRAQRFFLHGQFNPTLWLALLSGKIKPKQFYWHIWGADLY-EESKGLK----FRLFYPLRRLAQKRVGHVFA-TRGDLSY 111 (322)
T ss_pred CccceEEEecCCCHHHHHHHHhCCcCccceEEEEEChhhh-hcccchh----HHHHHHHHHHHHhhcCeEEE-ecchHHH
Confidence 78888899984 33333333333 5677777776654 2112222 33444667788889999999 7777777
Q ss_pred HHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecc-cccCCHHHHHHHHHHHHhhcccccc
Q psy12587 150 VQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRY-ERKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~-~~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
+.+..++. +.+....|.-.++.. .....+ . ..+++++ +.+|+- ++.-++..+++++++....
T Consensus 112 ~a~~~~~v-~~~llyfpt~m~~~l-~~~~~~---~-----~~~~~~t-IlvGNSgd~SN~Hie~L~~l~~~~~~------ 174 (322)
T PRK02797 112 FAQRHPKV-PGSLLYFPTRMDPSL-NTMAND---R-----QRAGKMT-ILVGNSGDRSNRHIEALRALHQQFGD------ 174 (322)
T ss_pred HHHhcCCC-CccEEecCCcchhhh-cccccc---c-----cCCCceE-EEEeCCCCCcccHHHHHHHHHHHhCC------
Confidence 65544444 233433333333221 111100 0 2224455 445554 4666777778888776543
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE-ecCCChHHHHHHHHhcceEEeCC-CCCCCCccHHhhhhc
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF-LTSPSDAAKISLFKFCHCIIYTP-SNEHFGIVPIEAMFC 306 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~-~g~~~~~e~~~~~~~adv~v~ps-~~e~~~~~~~Ea~a~ 306 (390)
++++++-=+.+. .++.|.+++++..+++--++++.. ..+++-+|..++++.||+.++.- +..|.|+..+ .+.+
T Consensus 175 -~v~ii~PlsYp~---gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~l-Li~~ 249 (322)
T PRK02797 175 -NVKIIVPMGYPA---NNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCL-LIQL 249 (322)
T ss_pred -CeEEEEECCcCC---CCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHH-HHHC
Confidence 577776544432 246899999999999875466765 57799999999999999988764 4678887666 8999
Q ss_pred CCCEEEecC-CCcccceecCcceeeecC---CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 307 KRPVIAVNS-GGPKESVVDGRTGFLCES---NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 307 G~pvi~~~~-~~~~e~i~~~~~g~~~~~---~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
|+||+.+.. +...++.+.+ .-++++. |...+.+ ..+++....++.+. |+.+...+.|.++++
T Consensus 250 G~~v~l~r~n~fwqdl~e~g-v~Vlf~~d~L~~~~v~e-----------~~rql~~~dk~~I~--Ff~pn~~~~W~~~l~ 315 (322)
T PRK02797 250 GKPVVLSRDNPFWQDLTEQG-LPVLFTGDDLDEDIVRE-----------AQRQLASVDKNIIA--FFSPNYLQGWRNALA 315 (322)
T ss_pred CCcEEEecCCchHHHHHhCC-CeEEecCCcccHHHHHH-----------HHHHHHhhCcceee--ecCHhHHHHHHHHHH
Confidence 999999865 4445544443 3333433 3222222 23344455555553 999999999999998
Q ss_pred hhhhh
Q psy12587 383 NMLDK 387 (390)
Q Consensus 383 ~~~~~ 387 (390)
....+
T Consensus 316 ~~~g~ 320 (322)
T PRK02797 316 IAAGE 320 (322)
T ss_pred HhhCC
Confidence 76544
No 120
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.24 E-value=3.8e-09 Score=93.25 Aligned_cols=82 Identities=20% Similarity=0.116 Sum_probs=59.5
Q ss_pred CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCccc------ceecCcceeeecC-CH
Q psy12587 263 SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKE------SVVDGRTGFLCES-NE 335 (390)
Q Consensus 263 ~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e------~i~~~~~g~~~~~-~~ 335 (390)
++++.+.++.+ +++.++|..||++|.-+ ...++.||+++|+|+|..+..+..| .+.+.+.|..++. +.
T Consensus 228 ~~~v~~~~~~~-~~~~~~l~~ad~vI~~~----G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~ 302 (321)
T TIGR00661 228 NENVEIRRITT-DNFKELIKNAELVITHG----GFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL 302 (321)
T ss_pred CCCEEEEECCh-HHHHHHHHhCCEEEECC----ChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH
Confidence 47899888776 67789999999999754 2346899999999999988765434 3445556777766 55
Q ss_pred HHHHHHHHHHhcCCh
Q psy12587 336 EAFAKAMKKIVDNDG 350 (390)
Q Consensus 336 ~~l~~~i~~l~~~~~ 350 (390)
++.+++...++++.
T Consensus 303 -~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 303 -RLLEAILDIRNMKR 316 (321)
T ss_pred -HHHHHHHhcccccc
Confidence 55556655555543
No 121
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.23 E-value=9.2e-10 Score=94.63 Aligned_cols=244 Identities=14% Similarity=0.115 Sum_probs=139.6
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec-CCc----cccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH-DHC----FKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS- 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~-~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 74 (390)
..|.-.++..| ++|.++|++|+.+ ... .......+..+..++.... ....... ...+++
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~-----~~~d~~~---------~~~~l~~ 78 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESS-----RYDDALE---------LINLLEE 78 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCc-----hhhhHHH---------HHHHHHh
Confidence 34777788999 9999999999888 211 1223355566665532110 0000001 112444
Q ss_pred cCCCEEEEcccccchhHHHhhc--ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQ--FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
.+||+|++.++..........+ .+.++.+-+.... -..||.++-.+.. .+..
T Consensus 79 ~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~-----------------------~~~~D~vin~~~~-~~~~-- 132 (279)
T TIGR03590 79 EKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADR-----------------------PHDCDLLLDQNLG-ADAS-- 132 (279)
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCC-----------------------CcCCCEEEeCCCC-cCHh--
Confidence 7999999988643332222222 4444455543210 0157888877764 2221
Q ss_pred Hhcc-CCCCceeecCC---CCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccc
Q psy12587 153 TFRS-LDHKCLDILYP---SVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 153 ~~~~-~~~~~~~vi~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
.|.+ .+......... .+..++....+.. .. ..+.+.++++.|...+.+....+++++..+....
T Consensus 133 ~y~~~~~~~~~~l~G~~Y~~lr~eF~~~~~~~-~~------~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~----- 200 (279)
T TIGR03590 133 DYQGLVPANCRLLLGPSYALLREEFYQLATAN-KR------RKPLRRVLVSFGGADPDNLTLKLLSALAESQINI----- 200 (279)
T ss_pred HhcccCcCCCeEEecchHHhhhHHHHHhhHhh-hc------ccccCeEEEEeCCcCCcCHHHHHHHHHhccccCc-----
Confidence 1222 22333444433 2333222211100 00 1113457788888777766677888887653221
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
++.+ ++|.+... .+++++.++.. +++.+.+++++ +.++|+.||++|.+ .|.++.|++++|+
T Consensus 201 -~i~v-v~G~~~~~-------~~~l~~~~~~~---~~i~~~~~~~~--m~~lm~~aDl~Is~-----~G~T~~E~~a~g~ 261 (279)
T TIGR03590 201 -SITL-VTGSSNPN-------LDELKKFAKEY---PNIILFIDVEN--MAELMNEADLAIGA-----AGSTSWERCCLGL 261 (279)
T ss_pred -eEEE-EECCCCcC-------HHHHHHHHHhC---CCEEEEeCHHH--HHHHHHHCCEEEEC-----CchHHHHHHHcCC
Confidence 1333 67766432 26777777653 47888888764 58999999999974 4689999999999
Q ss_pred CEEEecCC
Q psy12587 309 PVIAVNSG 316 (390)
Q Consensus 309 pvi~~~~~ 316 (390)
|+|+....
T Consensus 262 P~i~i~~~ 269 (279)
T TIGR03590 262 PSLAICLA 269 (279)
T ss_pred CEEEEEec
Confidence 99997653
No 122
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.18 E-value=1.4e-09 Score=97.61 Aligned_cols=186 Identities=13% Similarity=0.169 Sum_probs=124.7
Q ss_pred cchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHH
Q psy12587 180 EPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKK 259 (390)
Q Consensus 180 ~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~ 259 (390)
...|+.++ ||+ +.++|+.+.++ .|-.+..++++.++.++.|+ .+|++....... .+.+++.+++
T Consensus 273 ~~~R~~~g-Lp~-d~vvF~~fn~~--~KI~p~~l~~W~~IL~~vP~-----S~L~L~~~~~~~-------~~~l~~~~~~ 336 (468)
T PF13844_consen 273 VTTRAQYG-LPE-DAVVFGSFNNL--FKISPETLDLWARILKAVPN-----SRLWLLRFPASG-------EARLRRRFAA 336 (468)
T ss_dssp EEETGGGT---S-SSEEEEE-S-G--GG--HHHHHHHHHHHHHSTT-----EEEEEEETSTTH-------HHHHHHHHHH
T ss_pred ccCHHHcC-CCC-CceEEEecCcc--ccCCHHHHHHHHHHHHhCCC-----cEEEEeeCCHHH-------HHHHHHHHHH
Confidence 44566776 565 77777766664 47789999999999999996 888776543221 2678888889
Q ss_pred cCCC-CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccc-----eec-Ccceeeec
Q psy12587 260 LKLS-DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKES-----VVD-GRTGFLCE 332 (390)
Q Consensus 260 ~~l~-~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~-----i~~-~~~g~~~~ 332 (390)
.|++ +++.|.+..+.++....++.+|+++-+. .-+.+.+.+||+.+|+|||+-....+..- +.. |-..++..
T Consensus 337 ~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~-p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~ 415 (468)
T PF13844_consen 337 HGVDPDRIIFSPVAPREEHLRRYQLADICLDTF-PYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD 415 (468)
T ss_dssp TTS-GGGEEEEE---HHHHHHHGGG-SEEE--S-SS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S
T ss_pred cCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCC-CCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC
Confidence 9985 7899999999888888999999999764 34457889999999999999664333221 111 22334455
Q ss_pred CCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHh--hhcCHHHHHHHHHHHHHhh
Q psy12587 333 SNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFN--EKFSFQAFSIQLNTIVNNM 384 (390)
Q Consensus 333 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 384 (390)
|.+++.+...++.+|++ .++++++..++... .-|+...+++.+++.|+++
T Consensus 416 -s~~eYv~~Av~La~D~~-~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 416 -SEEEYVEIAVRLATDPE-RLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp -SHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 89999999999999999 89999888776553 3589999999999999875
No 123
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.17 E-value=3.7e-09 Score=90.88 Aligned_cols=242 Identities=13% Similarity=0.139 Sum_probs=151.9
Q ss_pred cCCCEEEEcc-cccchhHHHhhc-----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHH
Q psy12587 75 EKPDLVFCDL-VSICIPILQAKQ-----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKS 148 (390)
Q Consensus 75 ~~~Dvi~~~~-~~~~~~~~~~~~-----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 148 (390)
.+||++++-+ +.+.+.+.+..+ +|+|+++- |..|.+.... ...+.+.+|.+.+.=++..+
T Consensus 84 ~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~-PsVWAWr~~R-------------a~~i~~~~D~lLailPFE~~ 149 (381)
T COG0763 84 NKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVS-PSVWAWRPKR-------------AVKIAKYVDHLLAILPFEPA 149 (381)
T ss_pred cCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEEC-cceeeechhh-------------HHHHHHHhhHeeeecCCCHH
Confidence 9999998766 556666554433 66665543 3333333211 13345678999999999999
Q ss_pred HHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccc--cCCHHHHHHHHHHHHhhcccc
Q psy12587 149 VVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYER--KKNLELAIYSLNSLRSRLSDE 226 (390)
Q Consensus 149 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~--~K~~~~ll~a~~~l~~~~~~~ 226 (390)
.+.+. + .+++.+.++.-....-...+...++.++ ++.+.+.+.+..|+-.. .+....+.++++.++.+.|+
T Consensus 150 ~y~k~--g---~~~~yVGHpl~d~i~~~~~r~~ar~~l~-~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~- 222 (381)
T COG0763 150 FYDKF--G---LPCTYVGHPLADEIPLLPDREAAREKLG-IDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPD- 222 (381)
T ss_pred HHHhc--C---CCeEEeCChhhhhccccccHHHHHHHhC-CCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCC-
Confidence 88885 2 3578888875433222223444677775 56667777788886532 45677889999999999886
Q ss_pred cccceEEEEEcCCCCCCcchhHHHHHHHHHHH-HcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhh
Q psy12587 227 MKTHVKLVVAGGYDPHNIENVEYYKELGVLVK-KLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMF 305 (390)
Q Consensus 227 ~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~-~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a 305 (390)
.++++--.... | +.++.... .......+. +.+.+..+.|..||+.+..| |++.+|++.
T Consensus 223 ----~~~vlp~~~~~-------~-~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL 281 (381)
T COG0763 223 ----LKFVLPLVNAK-------Y-RRIIEEALKWEVAGLSLI----LIDGEKRKAFAAADAALAAS-----GTATLEAAL 281 (381)
T ss_pred ----ceEEEecCcHH-------H-HHHHHHHhhccccCceEE----ecCchHHHHHHHhhHHHHhc-----cHHHHHHHH
Confidence 88888665432 1 23332222 221111122 33445578999999988866 899999999
Q ss_pred cCCCEEEecC-C----------------CcccceecCcc--eeeecC-CHHHHHHHHHHHhcCChhHHHHHHHH
Q psy12587 306 CKRPVIAVNS-G----------------GPKESVVDGRT--GFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQF 359 (390)
Q Consensus 306 ~G~pvi~~~~-~----------------~~~e~i~~~~~--g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~ 359 (390)
+|+|.|++-. . +.+.++-+... -++-.. .++.+++++..++.|.. .++.+.+.
T Consensus 282 ~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~-~~~~~~~~ 354 (381)
T COG0763 282 AGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGD-RREALKEK 354 (381)
T ss_pred hCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChH-hHHHHHHH
Confidence 9999988532 2 22222211110 011122 68999999999999985 55555443
No 124
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.6e-08 Score=90.70 Aligned_cols=272 Identities=15% Similarity=0.146 Sum_probs=172.9
Q ss_pred cCCCEEEEcccc---cchhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHH
Q psy12587 75 EKPDLVFCDLVS---ICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQ 151 (390)
Q Consensus 75 ~~~Dvi~~~~~~---~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 151 (390)
-..||.+--+.. .-..+...+..|+.+++-+...-... .... +=-+|..+.+ +....++.
T Consensus 334 d~IdILvDl~g~T~d~r~~v~A~RpAPiqvswlGy~aT~g~--p~~D--------------Y~I~D~y~vP-p~ae~yys 396 (620)
T COG3914 334 DGIDILVDLDGHTVDTRCQVFAHRPAPIQVSWLGYPATTGS--PNMD--------------YFISDPYTVP-PTAEEYYS 396 (620)
T ss_pred cCCeEEEeccCceeccchhhhhcCCCceEEeecccccccCC--Ccce--------------EEeeCceecC-chHHHHHH
Confidence 778888754422 12223333337888877654321110 0000 0124555555 55666666
Q ss_pred HHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccce
Q psy12587 152 ATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHV 231 (390)
Q Consensus 152 ~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~ 231 (390)
+..-.++ ..+.+. +.+.+..+...+..+| +|+ +.+++++.++ ..|-...+++.+.++.+.-|+ -
T Consensus 397 Ekl~RLp-----~cy~p~--d~~~~v~p~~sR~~lg-lp~-~avVf~c~~n--~~K~~pev~~~wmqIL~~vP~-----S 460 (620)
T COG3914 397 EKLWRLP-----QCYQPV--DGFEPVTPPPSRAQLG-LPE-DAVVFCCFNN--YFKITPEVFALWMQILSAVPN-----S 460 (620)
T ss_pred HHHHhcc-----cccCCC--CCcccCCCCcchhhcC-CCC-CeEEEEecCC--cccCCHHHHHHHHHHHHhCCC-----c
Confidence 6433221 112222 2333333334455555 454 6666555554 567889999999999999986 7
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCC-CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCE
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKL-SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPV 310 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l-~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pv 310 (390)
.|++.|+++.. .....+++++++.|+ .++..|.+..++++....|.-||+++-+. .-+...+.+||+.+|+||
T Consensus 461 vl~L~~~~~~~-----~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTy-PY~g~TTa~daLwm~vPV 534 (620)
T COG3914 461 VLLLKAGGDDA-----EINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTY-PYGGHTTASDALWMGVPV 534 (620)
T ss_pred EEEEecCCCcH-----HHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecc-cCCCccchHHHHHhcCce
Confidence 88888887543 556889999999998 47899999999999999999999998643 345567899999999999
Q ss_pred EEecCCCc-----ccceec-CcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhh--hcCHHHHHHHHHHHHH
Q psy12587 311 IAVNSGGP-----KESVVD-GRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNE--KFSFQAFSIQLNTIVN 382 (390)
Q Consensus 311 i~~~~~~~-----~e~i~~-~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 382 (390)
|+-....+ ..++.+ |..-.++. +.++.++.-..+-+|.. .+++.+..-++.... -|+.+.+++++.++|.
T Consensus 535 lT~~G~~FasR~~~si~~~agi~e~vA~-s~~dYV~~av~~g~dra-l~q~~r~~l~~~r~tspL~d~~~far~le~~y~ 612 (620)
T COG3914 535 LTRVGEQFASRNGASIATNAGIPELVAD-SRADYVEKAVAFGSDRA-LRQQVRAELKRSRQTSPLFDPKAFARKLETLYW 612 (620)
T ss_pred eeeccHHHHHhhhHHHHHhcCCchhhcC-CHHHHHHHHHHhcccHH-HHHhhHHHHHhccccCcccCHHHHHHHHHHHHH
Confidence 99542111 112221 22334455 67777777777777776 666665444433322 6899999999999999
Q ss_pred hhhhh
Q psy12587 383 NMLDK 387 (390)
Q Consensus 383 ~~~~~ 387 (390)
++...
T Consensus 613 ~M~~~ 617 (620)
T COG3914 613 GMWSE 617 (620)
T ss_pred HHHHh
Confidence 87653
No 125
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=99.13 E-value=8.6e-08 Score=81.40 Aligned_cols=269 Identities=12% Similarity=0.072 Sum_probs=166.1
Q ss_pred cCCCEEEEcccc-cchhHHHhhc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 75 EKPDLVFCDLVS-ICIPILQAKQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 75 ~~~Dvi~~~~~~-~~~~~~~~~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
.+.+-++.|+.. ..+.++.+.+ .++.|++.+-|.+... .+ +..++...+.+.+.++.-.|++ ++.....
T Consensus 77 ~r~~kff~HGqFn~~lwlaLl~g~~~~~k~~WhIWGaDLYe~~-~~----~k~rlfy~lRr~aq~rvg~V~a-t~GDl~~ 150 (360)
T PF07429_consen 77 DRADKFFLHGQFNPWLWLALLFGKIKLKKCYWHIWGADLYEDS-RS----LKFRLFYFLRRLAQKRVGHVFA-TRGDLAY 150 (360)
T ss_pred CccceEEEeccCcHHHHHHHHcCCccccceEEEEeCchhhccc-cc----cchhHHHHHHHHHHhhcCeEEE-EcchHHH
Confidence 789999999843 3333333333 6778888876665432 12 2222334566777778888765 6888899
Q ss_pred HHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecc-cccCCHHHHHHHHHHHHhhcccccc
Q psy12587 150 VQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRY-ERKKNLELAIYSLNSLRSRLSDEMK 228 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~-~~~K~~~~ll~a~~~l~~~~~~~~~ 228 (390)
+++.|+..+ ......|..++.......... ...++.. +.+|+- ++.-++-.+++++++....
T Consensus 151 ~~q~~~~~~-~~~lyfPt~m~~~~~~~~~~~---------~~~~~lt-ILvGNSgd~sNnHieaL~~L~~~~~~------ 213 (360)
T PF07429_consen 151 FQQRYPRVP-ASLLYFPTRMDPALTLSEKNK---------KNKGKLT-ILVGNSGDPSNNHIEALEALKQQFGD------ 213 (360)
T ss_pred HHHHcCCCC-ceEEEcCCCCchhhhcccccc---------CCCCceE-EEEcCCCCCCccHHHHHHHHHHhcCC------
Confidence 999988663 334444544544322211100 1124445 445554 4566677777777664332
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE-ecCCChHHHHHHHHhcceEEeCCC-CCCCCccHHhhhhc
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF-LTSPSDAAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFC 306 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~-~g~~~~~e~~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~ 306 (390)
++++++-=+.+. .+++|.+++.+.++++--.+++.. ..+++-+|..++++.||+.++... ..|.|+..+ .+.+
T Consensus 214 -~~kIivPLsYg~---~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~l-Ll~~ 288 (360)
T PF07429_consen 214 -DVKIIVPLSYGA---NNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICL-LLQL 288 (360)
T ss_pred -CeEEEEECCCCC---chHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHH-HHHc
Confidence 477665333221 145899999999998754567765 578999999999999999999865 577887665 9999
Q ss_pred CCCEEEecCCCcccceecCcceeeec--C-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 307 KRPVIAVNSGGPKESVVDGRTGFLCE--S-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 307 G~pvi~~~~~~~~e~i~~~~~g~~~~--~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
|+||+.+........+.+..--+++. . |...+.++=+++..-+. +.+ .|......+.|.+.+.-
T Consensus 289 G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~~dk-----------~~i--aFf~pny~~~w~~~l~~ 355 (360)
T PF07429_consen 289 GKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLANVDK-----------QQI--AFFAPNYLQGWRQALRL 355 (360)
T ss_pred CCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhhCcc-----------cce--eeeCCchHHHHHHHHHH
Confidence 99999988776666665544334443 2 55555555444433222 222 24445556666665544
Q ss_pred h
Q psy12587 384 M 384 (390)
Q Consensus 384 ~ 384 (390)
+
T Consensus 356 ~ 356 (360)
T PF07429_consen 356 A 356 (360)
T ss_pred H
Confidence 3
No 126
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.13 E-value=2e-08 Score=92.38 Aligned_cols=243 Identities=14% Similarity=0.175 Sum_probs=144.5
Q ss_pred cCCCEEEEcc-cccchhHHHhhc---c--cEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHH
Q psy12587 75 EKPDLVFCDL-VSICIPILQAKQ---F--KVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKS 148 (390)
Q Consensus 75 ~~~Dvi~~~~-~~~~~~~~~~~~---~--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 148 (390)
++||+++.-+ +.+.+.+++..+ + |+|+++ .|..|.+... -.+.+-+.+|.+++.=+...+
T Consensus 309 ~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYV-sPqVWAWR~~-------------Rikki~k~vD~ll~IfPFE~~ 374 (608)
T PRK01021 309 TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYV-CPSIWAWRPK-------------RKTILEKYLDLLLLILPFEQN 374 (608)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEE-CccceeeCcc-------------hHHHHHHHhhhheecCccCHH
Confidence 8999998855 666676665544 3 766655 3444443321 113334567999999999999
Q ss_pred HHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccc--ccCCHHHHHHHHH--HHHhhcc
Q psy12587 149 VVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYE--RKKNLELAIYSLN--SLRSRLS 224 (390)
Q Consensus 149 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~--~~K~~~~ll~a~~--~l~~~~~ 224 (390)
.+++. .-++..+.|+.-...-........+++++ ++++.+.+-+..|+-. -.+....++++++ .+.+
T Consensus 375 ~y~~~-----gv~v~yVGHPL~d~i~~~~~~~~~r~~lg-l~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~--- 445 (608)
T PRK01021 375 LFKDS-----PLRTVYLGHPLVETISSFSPNLSWKEQLH-LPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLAS--- 445 (608)
T ss_pred HHHhc-----CCCeEEECCcHHhhcccCCCHHHHHHHcC-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhcc---
Confidence 99875 34788888885332111223344455554 3444566767788643 2456677788887 4433
Q ss_pred cccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhh
Q psy12587 225 DEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAM 304 (390)
Q Consensus 225 ~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~ 304 (390)
+.++++....+ .+.+.+++..+..++ -.+.+.. ..+-.++|+.||+.+..| |++.+|++
T Consensus 446 -----~l~fvvp~a~~-------~~~~~i~~~~~~~~~-~~~~ii~---~~~~~~~m~aaD~aLaaS-----GTaTLEaA 504 (608)
T PRK01021 446 -----THQLLVSSANP-------KYDHLILEVLQQEGC-LHSHIVP---SQFRYELMRECDCALAKC-----GTIVLETA 504 (608)
T ss_pred -----CeEEEEecCch-------hhHHHHHHHHhhcCC-CCeEEec---CcchHHHHHhcCeeeecC-----CHHHHHHH
Confidence 26776643221 112455555543321 1223321 111258999999999877 99999999
Q ss_pred hcCCCEEEec-CCCc------------------ccceecCc--ceee--ecC-CHHHHHHHHHHHhcCChhHHHHHHHHH
Q psy12587 305 FCKRPVIAVN-SGGP------------------KESVVDGR--TGFL--CES-NEEAFAKAMKKIVDNDGNIIQQFSQFG 360 (390)
Q Consensus 305 a~G~pvi~~~-~~~~------------------~e~i~~~~--~g~~--~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~ 360 (390)
.+|+|.|+.- .+.. +.++-+.. .-++ -++ +++.+++++ +++.|++ .++++.+..
T Consensus 505 L~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~-~r~~~~~~l 582 (608)
T PRK01021 505 LNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQ-SKEKQKDAC 582 (608)
T ss_pred HhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHH-HHHHHHHHH
Confidence 9999988832 2211 11111111 1122 134 899999996 8888887 777776555
Q ss_pred HHH
Q psy12587 361 FNR 363 (390)
Q Consensus 361 ~~~ 363 (390)
.+.
T Consensus 583 ~~l 585 (608)
T PRK01021 583 RDL 585 (608)
T ss_pred HHH
Confidence 443
No 127
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.12 E-value=2.2e-08 Score=87.03 Aligned_cols=277 Identities=14% Similarity=0.170 Sum_probs=155.7
Q ss_pred hhHhh-HhhhhcCCceeec----CCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCCEEE
Q psy12587 8 LTITA-TAWGATGPRTTAH----DHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPDLVF 81 (390)
Q Consensus 8 ~~~~l-~~L~~~G~~V~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dvi~ 81 (390)
+...+ +.|.++||+|.+. +....-....++++..+.... .+...++.. ..... ..+. .+++ ++||+++
T Consensus 15 fFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g-~~~~~Kl~~---~~~R~-~~l~-~~~~~~~pDv~i 88 (335)
T PF04007_consen 15 FFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG-DSLYGKLLE---SIERQ-YKLL-KLIKKFKPDVAI 88 (335)
T ss_pred HHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC-CCHHHHHHH---HHHHH-HHHH-HHHHhhCCCEEE
Confidence 45677 9999999998776 222222344567777664322 222222211 11111 1111 2344 8999999
Q ss_pred EcccccchhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCCCc
Q psy12587 82 CDLVSICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKC 161 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~ 161 (390)
+.+...+..+++..++|.|....+..... ..+..+..||.++++.-.-.+.+.+. + .+
T Consensus 89 s~~s~~a~~va~~lgiP~I~f~D~e~a~~-----------------~~~Lt~Pla~~i~~P~~~~~~~~~~~-G---~~- 146 (335)
T PF04007_consen 89 SFGSPEAARVAFGLGIPSIVFNDTEHAIA-----------------QNRLTLPLADVIITPEAIPKEFLKRF-G---AK- 146 (335)
T ss_pred ecCcHHHHHHHHHhCCCeEEEecCchhhc-----------------cceeehhcCCeeECCcccCHHHHHhc-C---Cc-
Confidence 98876666677888899998887643211 11233557899999876555554443 2 22
Q ss_pred eeec-CCCCCCCC----CCCCCccchhhhcCCCCCCCCeEEEEeecccc--cCCH-HHHHHHHHHHHhhcccccccceEE
Q psy12587 162 LDIL-YPSVYTEG----LEKTTPEPIENVLNPLPGKEDIVFLSINRYER--KKNL-ELAIYSLNSLRSRLSDEMKTHVKL 233 (390)
Q Consensus 162 ~~vi-~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~--~K~~-~~ll~a~~~l~~~~~~~~~~~~~l 233 (390)
-++. ++|++... |.+ .....+.++ +. +++++++=...+.. .++- ..+-+.++.+.+... . +
T Consensus 147 ~~i~~y~G~~E~ayl~~F~P--d~~vl~~lg-~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~------~-v 215 (335)
T PF04007_consen 147 NQIRTYNGYKELAYLHPFKP--DPEVLKELG-LD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGR------N-V 215 (335)
T ss_pred CCEEEECCeeeEEeecCCCC--ChhHHHHcC-CC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCc------e-E
Confidence 3444 77765432 332 344555565 23 35555552222211 1122 334466666666532 3 6
Q ss_pred EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEe
Q psy12587 234 VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 234 ~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~ 313 (390)
+++.+.... . ...++++ +.+... ..+..+++..||++|.- .|+...||...|+|.|.+
T Consensus 216 V~ipr~~~~--------~---~~~~~~~----~~i~~~--~vd~~~Ll~~a~l~Ig~-----ggTMa~EAA~LGtPaIs~ 273 (335)
T PF04007_consen 216 VIIPRYEDQ--------R---ELFEKYG----VIIPPE--PVDGLDLLYYADLVIGG-----GGTMAREAALLGTPAISC 273 (335)
T ss_pred EEecCCcch--------h---hHHhccC----ccccCC--CCCHHHHHHhcCEEEeC-----CcHHHHHHHHhCCCEEEe
Confidence 666655432 2 2223332 333222 11335899999999953 366789999999999997
Q ss_pred cCC---CcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 314 NSG---GPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 314 ~~~---~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
-.+ +..+++.+ .|+++.. |++++.+.+.....
T Consensus 274 ~~g~~~~vd~~L~~--~Gll~~~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 274 FPGKLLAVDKYLIE--KGLLYHSTDPDEIVEYVRKNLG 309 (335)
T ss_pred cCCcchhHHHHHHH--CCCeEecCCHHHHHHHHHHhhh
Confidence 543 23344433 4777776 99998886666443
No 128
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.91 E-value=1.9e-07 Score=84.47 Aligned_cols=160 Identities=17% Similarity=0.204 Sum_probs=106.1
Q ss_pred CCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe
Q psy12587 190 PGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL 269 (390)
Q Consensus 190 ~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~ 269 (390)
+.+.+++.+..|+.... ..+++.+.......+ .++++...+ .. . ..-++++|+...
T Consensus 234 ~~d~~~vyvslGt~~~~---~~l~~~~~~a~~~l~------~~vi~~~~~-~~--------~------~~~~~p~n~~v~ 289 (406)
T COG1819 234 PADRPIVYVSLGTVGNA---VELLAIVLEALADLD------VRVIVSLGG-AR--------D------TLVNVPDNVIVA 289 (406)
T ss_pred cCCCCeEEEEcCCcccH---HHHHHHHHHHHhcCC------cEEEEeccc-cc--------c------ccccCCCceEEe
Confidence 44466777777776644 444444444444333 566666544 21 1 123457899999
Q ss_pred cCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----CcccceecCcceeeec--C-CHHHHHHHH
Q psy12587 270 TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESVVDGRTGFLCE--S-NEEAFAKAM 342 (390)
Q Consensus 270 g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~~~~~g~~~~--~-~~~~l~~~i 342 (390)
++++.. .++..||++|+.. ...++.||+.+|+|+|+-+.+ ...+.+++-..|.... . +++.++++|
T Consensus 290 ~~~p~~---~~l~~ad~vI~hG----G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av 362 (406)
T COG1819 290 DYVPQL---ELLPRADAVIHHG----GAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAV 362 (406)
T ss_pred cCCCHH---HHhhhcCEEEecC----CcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHH
Confidence 999998 4899999999744 456899999999999996653 2344556667787776 5 999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 343 KKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
.++++++. .++.. +...+.+.+.-..+..++.+.+...
T Consensus 363 ~~vL~~~~-~~~~~-~~~~~~~~~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 363 NEVLADDS-YRRAA-ERLAEEFKEEDGPAKAADLLEEFAR 400 (406)
T ss_pred HHHhcCHH-HHHHH-HHHHHHhhhcccHHHHHHHHHHHHh
Confidence 99999887 44443 4444444455555555555554443
No 129
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.81 E-value=4.9e-08 Score=74.94 Aligned_cols=121 Identities=19% Similarity=0.157 Sum_probs=73.2
Q ss_pred chhhhHhh-HhhhhcCCceeec--CCcc-ccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCCE
Q psy12587 5 TARLTITA-TAWGATGPRTTAH--DHCF-KETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPDL 79 (390)
Q Consensus 5 ~~~~~~~l-~~L~~~G~~V~~~--~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv 79 (390)
.+.++.++ ++|.++||+|+++ +... ......++.+..++..... ...+++ .. .. ..+++ .+||+
T Consensus 9 ~~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~--------~~~~~~-~~-~l-~k~ik~~~~Dv 77 (139)
T PF13477_consen 9 PSTFIYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKS--------PLNYIK-YF-RL-RKIIKKEKPDV 77 (139)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCc--------cHHHHH-HH-HH-HHHhccCCCCE
Confidence 45678899 9999999999988 2221 2222455666655322111 111222 11 11 23555 99999
Q ss_pred EEEccccc-chh---HHHhhc-ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEcc
Q psy12587 80 VFCDLVSI-CIP---ILQAKQ-FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNS 143 (390)
Q Consensus 80 i~~~~~~~-~~~---~~~~~~-~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s 143 (390)
||+|.... ++. +.+..+ +|+|++.|+.+...... ..+ +.+++.+++++++|.+++.|
T Consensus 78 Ih~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~~~~~~~---~~~----~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 78 IHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSDFYNSSK---KKK----LKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred EEEecCChHHHHHHHHHHHcCCCCEEEEecCCeeecCCc---hHH----HHHHHHHHHHHhCCEEEEcC
Confidence 99999654 232 234455 89999999865422211 111 34567788999999999875
No 130
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=98.79 E-value=2.6e-08 Score=83.81 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=48.8
Q ss_pred cCCCEEEEcccccchhHHHhh----------cccEEEEeecCCccccchhhhh-----h-hh--------cccchhhHHH
Q psy12587 75 EKPDLVFCDLVSICIPILQAK----------QFKVLFYCHYPDQLLSKQGSFL-----K-SI--------YRFPLNKLEE 130 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~----------~~~~v~~~h~~~~~~~~~~~~~-----~-~~--------~~~~~~~~~~ 130 (390)
.+|||||+|+|.+++....++ ++|+++++|+............ . .. ..... .+.+
T Consensus 132 ~~pDIIH~hDW~tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~~~i-n~lk 210 (245)
T PF08323_consen 132 WKPDIIHCHDWHTALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFYGQI-NFLK 210 (245)
T ss_dssp -S-SEEEEECGGGTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEETTEE-EHHH
T ss_pred CCCCEEEecCchHHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhcccccccccccc-CHHH
Confidence 599999999998877544332 2899999998644322211111 0 00 00111 3456
Q ss_pred HHhcCcceEEEccHhHHHHHHHHh
Q psy12587 131 WTTCKADKIVVNSEFTKSVVQATF 154 (390)
Q Consensus 131 ~~~~~ad~ii~~s~~~~~~~~~~~ 154 (390)
..+..||.|+++|+..++++.+..
T Consensus 211 ~gi~~AD~v~TVS~~Ya~Ei~~~~ 234 (245)
T PF08323_consen 211 AGIVYADKVTTVSPTYAREIQTPE 234 (245)
T ss_dssp HHHHHSSEEEESSHHHHHHTTSHH
T ss_pred HHHHhcCEeeeCCHHHHHHHhCcc
Confidence 788999999999999998887654
No 131
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.72 E-value=6e-06 Score=68.87 Aligned_cols=284 Identities=14% Similarity=0.124 Sum_probs=156.2
Q ss_pred hhhHhh-HhhhhcCCceeec----CCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCCEE
Q psy12587 7 RLTITA-TAWGATGPRTTAH----DHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPDLV 80 (390)
Q Consensus 7 ~~~~~l-~~L~~~G~~V~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dvi 80 (390)
++..++ ..|+++||+|.+- +...+-...-++++..+..-...+...+ +..+.. ....+. .++. .+||+.
T Consensus 14 hfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~K---l~~~~e-R~~~L~-ki~~~~kpdv~ 88 (346)
T COG1817 14 HFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKEK---LLESAE-RVYKLS-KIIAEFKPDVA 88 (346)
T ss_pred hHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHHH---HHHHHH-HHHHHH-HHHhhcCCceE
Confidence 456778 9999999996554 3333344455677777643221111111 111111 111111 3455 999999
Q ss_pred EEcccccchhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCCC
Q psy12587 81 FCDLVSICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHK 160 (390)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ 160 (390)
+.-............++|.|+...+.... ...+..+..|+.+++++....+.+... |.++.
T Consensus 89 i~~~s~~l~rvafgLg~psIi~~D~ehA~-----------------~qnkl~~Pla~~ii~P~~~~~~~~~~~--G~~p~ 149 (346)
T COG1817 89 IGKHSPELPRVAFGLGIPSIIFVDNEHAE-----------------AQNKLTLPLADVIITPEAIDEEELLDF--GADPN 149 (346)
T ss_pred eecCCcchhhHHhhcCCceEEecCChhHH-----------------HHhhcchhhhhheecccccchHHHHHh--CCCcc
Confidence 87332222233444458888877654331 112445677899999988777776664 32122
Q ss_pred ceeecCCCCC----CCCCCCCCccchhhhcCCCCCCCCeEEEEeecc-----cccCCHHHHHHHHHHHHhhcccccccce
Q psy12587 161 CLDILYPSVY----TEGLEKTTPEPIENVLNPLPGKEDIVFLSINRY-----ERKKNLELAIYSLNSLRSRLSDEMKTHV 231 (390)
Q Consensus 161 ~~~vi~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~-----~~~K~~~~ll~a~~~l~~~~~~~~~~~~ 231 (390)
+ .+-+||+. ...|.+ ....-+.+| +..++.++++=.-.+ ...++.+.+.++++.+.+.
T Consensus 150 ~-i~~~~giae~~~v~~f~p--d~evlkeLg-l~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~--------- 216 (346)
T COG1817 150 K-ISGYNGIAELANVYGFVP--DPEVLKELG-LEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKY--------- 216 (346)
T ss_pred c-eecccceeEEeecccCCC--CHHHHHHcC-CCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhC---------
Confidence 2 23344532 222333 233444444 344345655532221 2245666677777777764
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEE
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVI 311 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi 311 (390)
-.+++-.. +..++..+.+ +++...-.. .+-.+++-.|++++-. .|.-.-||...|+|.|
T Consensus 217 giV~ipr~-----------~~~~eife~~---~n~i~pk~~--vD~l~Llyya~lvig~-----ggTMarEaAlLGtpaI 275 (346)
T COG1817 217 GIVLIPRE-----------KEQAEIFEGY---RNIIIPKKA--VDTLSLLYYATLVIGA-----GGTMAREAALLGTPAI 275 (346)
T ss_pred cEEEecCc-----------hhHHHHHhhh---ccccCCccc--ccHHHHHhhhheeecC-----CchHHHHHHHhCCceE
Confidence 24455443 3444444443 223222222 2225688888888842 3555689999999999
Q ss_pred EecCC---CcccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 312 AVNSG---GPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 312 ~~~~~---~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
.+..| +..+++. +.|.++.. |+.+..+.+.+.+.++.
T Consensus 276 s~~pGkll~vdk~li--e~G~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 276 SCYPGKLLAVDKYLI--EKGLLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred EecCCccccccHHHH--hcCceeecCCHHHHHHHHHHHhhchh
Confidence 98854 2333332 36788877 88877777777776654
No 132
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.63 E-value=5.6e-06 Score=70.30 Aligned_cols=310 Identities=12% Similarity=0.059 Sum_probs=166.4
Q ss_pred cchhhhHhh-Hhhhhc--CCceeec-C-Ccccccc-CCCcceEEeccccccc-cc-------hhhHHHHHHHHHHHHHHH
Q psy12587 4 ATARLTITA-TAWGAT--GPRTTAH-D-HCFKETK-DGTLPVKVIGDWLPRN-IF-------GKFYALCMYLRMIVIALY 69 (390)
Q Consensus 4 G~~~~~~~l-~~L~~~--G~~V~~~-~-~~~~~~~-~~~~~i~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~ 69 (390)
|.-++...+ ++|.+. |.+|.++ + ....... ..++....++...... .. ..........+.+ +.
T Consensus 23 GHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l~e~~~~Rs~l---il 99 (400)
T COG4671 23 GHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDLEETKKLRSQL---IL 99 (400)
T ss_pred hHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCHHHHHHHHHHH---HH
Confidence 566778888 999998 9999988 2 2222222 2455555554332211 10 1111111222211 11
Q ss_pred HHHhh-cCCCEEEEcccccchhH-----HHhhc---ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEE
Q psy12587 70 VAWYS-EKPDLVFCDLVSICIPI-----LQAKQ---FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIV 140 (390)
Q Consensus 70 ~~~~~-~~~Dvi~~~~~~~~~~~-----~~~~~---~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 140 (390)
.-++ ++||++++...++++.. +...+ .+.+.-..+.-..... ..+.+.+ .-.+..+-+..|.|+
T Consensus 100 -~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~D~p~~---~~~~w~~---~~~~~~I~r~yD~V~ 172 (400)
T COG4671 100 -STAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIRDIPQE---LEADWRR---AETVRLINRFYDLVL 172 (400)
T ss_pred -HHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhhhchhh---hccchhh---hHHHHHHHHhheEEE
Confidence 2233 99999999997766421 11111 3343333321111100 0011111 122334445679999
Q ss_pred EccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccccc-CCHHHHHHHHHHH
Q psy12587 141 VNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERK-KNLELAIYSLNSL 219 (390)
Q Consensus 141 ~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~-K~~~~ll~a~~~l 219 (390)
+..+-.-..+.+.|+..+.-+-.+.+.|+-....+..+.. ... ..+...+++.+|.-... .=++..++|...+
T Consensus 173 v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p---~~~---~pE~~~Ilvs~GGG~dG~eLi~~~l~A~~~l 246 (400)
T COG4671 173 VYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLP---PHE---APEGFDILVSVGGGADGAELIETALAAAQLL 246 (400)
T ss_pred EecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCC---CcC---CCccceEEEecCCChhhHHHHHHHHHHhhhC
Confidence 8887666666666665444456666666431111111100 000 12356677777764322 1122333333333
Q ss_pred HhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCcc
Q psy12587 220 RSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIV 299 (390)
Q Consensus 220 ~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~ 299 (390)
.+-. ..-+++.|...+. ++.+++...-.-.++|.+..+..+- .++++.|+..|.-+ .=++
T Consensus 247 ~~l~------~~~~ivtGP~MP~--------~~r~~l~~~A~~~p~i~I~~f~~~~--~~ll~gA~~vVSm~----GYNT 306 (400)
T COG4671 247 AGLN------HKWLIVTGPFMPE--------AQRQKLLASAPKRPHISIFEFRNDF--ESLLAGARLVVSMG----GYNT 306 (400)
T ss_pred CCCC------cceEEEeCCCCCH--------HHHHHHHHhcccCCCeEEEEhhhhH--HHHHHhhheeeecc----cchh
Confidence 3321 1357788877765 5555555544334789888887655 68999999999643 2258
Q ss_pred HHhhhhcCCCEEEecCCCccc-ce-e------cCcceeeecC--CHHHHHHHHHHHhcCC
Q psy12587 300 PIEAMFCKRPVIAVNSGGPKE-SV-V------DGRTGFLCES--NEEAFAKAMKKIVDND 349 (390)
Q Consensus 300 ~~Ea~a~G~pvi~~~~~~~~e-~i-~------~~~~g~~~~~--~~~~l~~~i~~l~~~~ 349 (390)
++|-+++|||.+.-+....+| .+ . =|-..++.+. +++.++++|..+++.|
T Consensus 307 vCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 307 VCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred hhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCC
Confidence 899999999998876543333 21 1 1333444554 8999999999998854
No 133
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.60 E-value=0.00034 Score=63.66 Aligned_cols=255 Identities=9% Similarity=0.065 Sum_probs=136.0
Q ss_pred cCCCEEEEccccc-----------chhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEcc
Q psy12587 75 EKPDLVFCDLVSI-----------CIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNS 143 (390)
Q Consensus 75 ~~~Dvi~~~~~~~-----------~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s 143 (390)
.+.|+++.-+... ....+++.++|+++.-++..++.. ...+.+.+++++++|.|.+=-
T Consensus 116 ~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiGPf~~-----------~~~r~l~r~vl~~~~~ItvRD 184 (426)
T PRK10017 116 SGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVGPFQD-----------EQFNQLANYVFGHCDALILRE 184 (426)
T ss_pred HhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCCCcCC-----------HHHHHHHHHHHhcCCEEEEcc
Confidence 7889998865321 112334555899988887644321 122466678899999999988
Q ss_pred HhHHHHHHHHhccCCCCceeecCCCCCCCCCCCC---CccchhhhcCCCCCCCCeEEEEeeccccc-C--C------HHH
Q psy12587 144 EFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKT---TPEPIENVLNPLPGKEDIVFLSINRYERK-K--N------LEL 211 (390)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~i~~~g~~~~~-K--~------~~~ 211 (390)
+...+.+.+. +++..++.+.+.++-.-..... +.......++ .+...+.+-+.+..+.+. + + ...
T Consensus 185 ~~S~~~Lk~l--Gv~~~~v~~~aDpAF~L~~~~~~~~~~~~~~~~~~-~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~ 261 (426)
T PRK10017 185 SVSLDLMKRS--NITTAKVEHGVDTAWLVDHHTEDFTASYAVQHWLD-VAAQQKTVAITLRELAPFDKRLGTTQQAYEKA 261 (426)
T ss_pred HHHHHHHHHh--CCCccceEEecChhhhCCccccccccchhhhhhhc-ccccCCEEEEEecccccccccccccHHHHHHH
Confidence 8888888776 4534567776643211000000 0000111111 012233333333433311 1 1 134
Q ss_pred HHHHHHHHHhhcccccccceEEEEEcCCCC--C-CcchhHHHHHHHHHHHHcCCCCcEEE-ecCCChHHHHHHHHhcceE
Q psy12587 212 AIYSLNSLRSRLSDEMKTHVKLVVAGGYDP--H-NIENVEYYKELGVLVKKLKLSDNVLF-LTSPSDAAKISLFKFCHCI 287 (390)
Q Consensus 212 ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~--~-~~~~~~y~~~~~~~~~~~~l~~~v~~-~g~~~~~e~~~~~~~adv~ 287 (390)
+.+++..+.+++ .+++++..... . ..++. ...++..+.+.-+.++++ .+..+..|+..++++||++
T Consensus 262 la~~i~~Li~~g-------~~Vv~lp~~~~~~~~~~dD~---~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ 331 (426)
T PRK10017 262 FAGVVNRIIDEG-------YQVIALSTCTGIDSYNKDDR---MVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELT 331 (426)
T ss_pred HHHHHHHHHHCC-------CeEEEEecccCccCCCCchH---HHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEE
Confidence 456666665543 44444443211 0 11111 222334444432333433 4445677889999999999
Q ss_pred EeCCCCCCCCccHHhhhhcCCCEEEecC-CCcccceec-Ccceee--ecC-CHHHHHHHHHHHhcCChhHHHHHHH
Q psy12587 288 IYTPSNEHFGIVPIEAMFCKRPVIAVNS-GGPKESVVD-GRTGFL--CES-NEEAFAKAMKKIVDNDGNIIQQFSQ 358 (390)
Q Consensus 288 v~ps~~e~~~~~~~Ea~a~G~pvi~~~~-~~~~e~i~~-~~~g~~--~~~-~~~~l~~~i~~l~~~~~~~~~~~~~ 358 (390)
|..-. -+++=|++.|+|+|+-.. .-...++.+ +...++ +.. +.+++.+.+.+++++.++.++++.+
T Consensus 332 ig~Rl-----Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~l~~ 402 (426)
T PRK10017 332 VGTRL-----HSAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNARLAE 402 (426)
T ss_pred EEecc-----hHHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 85332 245669999999999554 222222221 112232 334 7889999999999998733444433
No 134
>PLN02448 UDP-glycosyltransferase family protein
Probab=98.59 E-value=0.00016 Score=66.97 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=60.2
Q ss_pred CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----CcccceecC-cceeeec------
Q psy12587 264 DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESVVDG-RTGFLCE------ 332 (390)
Q Consensus 264 ~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~~~-~~g~~~~------ 332 (390)
+++.+.+++++. +++...++..+-+ .+..++++||+++|+|+|+.+.. .....+.+. +.|+-+.
T Consensus 323 ~~~~v~~w~pQ~---~iL~h~~v~~fvt--HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~ 397 (459)
T PLN02448 323 DMGLVVPWCDQL---KVLCHSSVGGFWT--HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEE 397 (459)
T ss_pred CCEEEeccCCHH---HHhccCccceEEe--cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccC
Confidence 467778999987 4777777633222 23456899999999999996642 233333331 3455442
Q ss_pred -C-CHHHHHHHHHHHhcCC-hhHHHHHHHHHH
Q psy12587 333 -S-NEEAFAKAMKKIVDND-GNIIQQFSQFGF 361 (390)
Q Consensus 333 -~-~~~~l~~~i~~l~~~~-~~~~~~~~~~~~ 361 (390)
. +.+++++++.+++.++ + .-+++++++.
T Consensus 398 ~~~~~~~l~~av~~vl~~~~~-~~~~~r~~a~ 428 (459)
T PLN02448 398 TLVGREEIAELVKRFMDLESE-EGKEMRRRAK 428 (459)
T ss_pred CcCcHHHHHHHHHHHhcCCch-hHHHHHHHHH
Confidence 3 7899999999999875 3 3444444443
No 135
>KOG3742|consensus
Probab=98.55 E-value=4.2e-06 Score=72.89 Aligned_cols=251 Identities=18% Similarity=0.199 Sum_probs=145.6
Q ss_pred hHHHHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCC---------ccchhhhcCC-------CC
Q psy12587 127 KLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTT---------PEPIENVLNP-------LP 190 (390)
Q Consensus 127 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~---------~~~~~~~~~~-------l~ 190 (390)
-+|+-+...|+...++|+-++-....... .++-.+.|||.+...|.... ++.+.+..++ +.
T Consensus 244 C~ERaa~h~AhVFTTVSeITa~EAeHlLk---RKPD~itPNGLNV~KFsA~HEFQNLHA~~KekIndFVRGHF~GhlDFd 320 (692)
T KOG3742|consen 244 CLERAAAHTAHVFTTVSEITALEAEHLLK---RKPDVITPNGLNVKKFSAVHEFQNLHAQKKEKINDFVRGHFHGHLDFD 320 (692)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHh---cCCCeeCCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 45677777888888999877766655544 45677889999988776532 1222221111 22
Q ss_pred CCCCeEEEEeeccc-ccCCHHHHHHHHHHHHhhcccc--cccceEEEEEcCCCCC----CcchhHHHHHHHHHHHH----
Q psy12587 191 GKEDIVFLSINRYE-RKKNLELAIYSLNSLRSRLSDE--MKTHVKLVVAGGYDPH----NIENVEYYKELGVLVKK---- 259 (390)
Q Consensus 191 ~~~~~~i~~~g~~~-~~K~~~~ll~a~~~l~~~~~~~--~~~~~~l~i~G~~~~~----~~~~~~y~~~~~~~~~~---- 259 (390)
-++...+..+||.+ .+||-|.+|+++++|.-...-. ...-+.|.|....... ...++...+++...+.+
T Consensus 321 LdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s~~TVVaFlImPaktN~FnVesLkgqAv~kqL~dtv~~Vk~~ 400 (692)
T KOG3742|consen 321 LDKTLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGSPKTVVAFLIMPAKTNSFNVESLKGQAVRKQLWDTVNEVKEK 400 (692)
T ss_pred ccceEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCCCceEEEEEEeecCCCccchhhhccHHHHHHHHHHHHHHHHH
Confidence 34567788889987 6999999999999875432210 0011234444322211 11111111221111110
Q ss_pred --------------------------------------cCCC-----------------------------Cc--EEEec
Q psy12587 260 --------------------------------------LKLS-----------------------------DN--VLFLT 270 (390)
Q Consensus 260 --------------------------------------~~l~-----------------------------~~--v~~~g 270 (390)
-.++ ++ |.|++
T Consensus 401 ~Gkrifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa~DpiL~~iRr~~LFN~~~DRVKvifHP 480 (692)
T KOG3742|consen 401 VGKRIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDANDPILSSIRRIGLFNSPSDRVKVIFHP 480 (692)
T ss_pred HHHHHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccccchHHHHhHhhhcccCcccceEEEecH
Confidence 0111 12 23332
Q ss_pred C-CC------hHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccce----ecC-cceeee-cC----
Q psy12587 271 S-PS------DAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESV----VDG-RTGFLC-ES---- 333 (390)
Q Consensus 271 ~-~~------~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i----~~~-~~g~~~-~~---- 333 (390)
. ++ .-+..++.+.|++.|+||.+|++|.+..|+--+|+|-|+|+..|..-++ .+. ..|+.+ +-
T Consensus 481 EFLss~sPllglDYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks 560 (692)
T KOG3742|consen 481 EFLSSTSPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKS 560 (692)
T ss_pred HHhccCCCCcCCCHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCC
Confidence 1 11 1234578899999999999999999999999999999999997765444 332 245443 21
Q ss_pred ---CHHHHHHHHHHHhcCChhHHHHHH-HHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 334 ---NEEAFAKAMKKIVDNDGNIIQQFS-QFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 334 ---~~~~l~~~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+.+++++-+........ |+++. +|--+....-.+|..+...|.+.=.
T Consensus 561 ~deSv~qL~~~m~~F~~qsR--RQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~ 611 (692)
T KOG3742|consen 561 PDESVQQLASFMYEFCKQSR--RQRIIQRNRTERLSDLLDWKYLGRYYRKARH 611 (692)
T ss_pred hhhHHHHHHHHHHHHHHHHH--HHHHHHhcchhhHHHHHhHHHHhHHHHHHHH
Confidence 44555555555554333 44433 3334455567788888777765433
No 136
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.55 E-value=5e-06 Score=77.58 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=74.7
Q ss_pred CCCcEEEecCCChHHHHHHH--HhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----CcccceecCcceeeecC--
Q psy12587 262 LSDNVLFLTSPSDAAKISLF--KFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESVVDGRTGFLCES-- 333 (390)
Q Consensus 262 l~~~v~~~g~~~~~e~~~~~--~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~~~~~g~~~~~-- 333 (390)
+++||.+.+++|.. +++ .+++++|. -|...++.||+.+|+|+|+-+.. .....+...+.|..++.
T Consensus 344 ~p~Nv~i~~w~Pq~---~lL~hp~v~~fIt----HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~ 416 (507)
T PHA03392 344 LPANVLTQKWFPQR---AVLKHKNVKAFVT----QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVT 416 (507)
T ss_pred CCCceEEecCCCHH---HHhcCCCCCEEEe----cCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCC
Confidence 47899999999987 577 45888884 33456899999999999997652 23333445556777653
Q ss_pred -CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy12587 334 -NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNT 379 (390)
Q Consensus 334 -~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
+.+++.++|.++++++. .+++..+-+.....+..+....+-.+.+
T Consensus 417 ~t~~~l~~ai~~vl~~~~-y~~~a~~ls~~~~~~p~~~~~~av~~iE 462 (507)
T PHA03392 417 VSAAQLVLAIVDVIENPK-YRKNLKELRHLIRHQPMTPLHKAIWYTE 462 (507)
T ss_pred cCHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88999999999999877 5555544444433233334443334443
No 137
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.51 E-value=7.2e-06 Score=72.19 Aligned_cols=179 Identities=14% Similarity=0.145 Sum_probs=107.4
Q ss_pred cCCCEEEEcc-cccchhHHHhhc-----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHH
Q psy12587 75 EKPDLVFCDL-VSICIPILQAKQ-----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKS 148 (390)
Q Consensus 75 ~~~Dvi~~~~-~~~~~~~~~~~~-----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 148 (390)
.+||+++.-+ +.+.+.+++..+ +|+++++- |..|.+.... .+.+.+.+|.+.+.-++..+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~-PqvWAWr~~R-------------~~~i~k~~d~vl~ifPFE~~ 140 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYIL-PQVWAWKKGR-------------AKILEKYCDFLASILPFEVQ 140 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC-ccceeeCcch-------------HHHHHHHHhhhhccCCCCHH
Confidence 8999998755 666666555433 77766553 4444433221 13334567777776665554
Q ss_pred HHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccc--cCCHHHHHHHHHHHHhhcccc
Q psy12587 149 VVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYER--KKNLELAIYSLNSLRSRLSDE 226 (390)
Q Consensus 149 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~--~K~~~~ll~a~~~l~~~~~~~ 226 (390)
.+ + .+..++.|++-.. +.... ..+ +. ++.+.++.|+-.. .+.+..+++++.++.++
T Consensus 141 ~y----g----~~~~~VGhPl~d~-~~~~~-----~~~---~~-~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~---- 198 (347)
T PRK14089 141 FY----Q----SKATYVGHPLLDE-IKEFK-----KDL---DK-EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGK---- 198 (347)
T ss_pred Hh----C----CCCEEECCcHHHh-hhhhh-----hhc---CC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhc----
Confidence 44 2 3567888885332 11110 001 22 3566677776432 34556677888888764
Q ss_pred cccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhc
Q psy12587 227 MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFC 306 (390)
Q Consensus 227 ~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~ 306 (390)
...+++.+.... +.+++...+. ..+.+.+ +..++|+.||+.+..| |++.+|++.+
T Consensus 199 ---~~~~~i~~a~~~---------~~i~~~~~~~---~~~~~~~-----~~~~~m~~aDlal~~S-----GT~TLE~al~ 253 (347)
T PRK14089 199 ---EKILVVPSFFKG---------KDLKEIYGDI---SEFEISY-----DTHKALLEAEFAFICS-----GTATLEAALI 253 (347)
T ss_pred ---CcEEEEeCCCcH---------HHHHHHHhcC---CCcEEec-----cHHHHHHhhhHHHhcC-----cHHHHHHHHh
Confidence 256777765421 4455544332 2344443 2368999999999866 8888899999
Q ss_pred CCCEEEec
Q psy12587 307 KRPVIAVN 314 (390)
Q Consensus 307 G~pvi~~~ 314 (390)
|+|.|..-
T Consensus 254 g~P~Vv~Y 261 (347)
T PRK14089 254 GTPFVLAY 261 (347)
T ss_pred CCCEEEEE
Confidence 99998844
No 138
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.50 E-value=9.8e-06 Score=73.23 Aligned_cols=271 Identities=15% Similarity=0.121 Sum_probs=125.5
Q ss_pred cCCCEEEEcccccc-hhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHH
Q psy12587 75 EKPDLVFCDLVSIC-IPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQAT 153 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~-~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 153 (390)
.+.+++++...... .......+.++|..+|+. +.-.......... .............|.+++.|+...+.+.+.
T Consensus 77 ~~Ak~~i~~~~~~~~~~~~~~~~~~~i~lwHG~-~~K~~g~~~~~~~---~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~ 152 (369)
T PF04464_consen 77 ARAKYIISDSYFPDLIYFKKRKNQKYIQLWHGI-PLKKIGYDSPDNK---NYRKNYKRNYRNYDYFIVSSEFEKEIFKKA 152 (369)
T ss_dssp HHEEEEEESS---T--TS---TTSEEEE--SS---SB--GGG-S------TS-HHHHHHHTT-SEEEESSHHHHHHHHHH
T ss_pred HhCcEEEECCCCCcccccccCCCcEEEEecCCC-cccccchhccccc---cchhhhhhhccCCcEEEECCHHHHHHHHHH
Confidence 45678887753222 223333448999999986 2211000000000 000123445778899999999999999998
Q ss_pred hccCCCCceeecCCCCCCCCCCCCCc--cchhhhcCCCCCCCCeEEEEeecccccCCH------HH--HHHHHHHHHhhc
Q psy12587 154 FRSLDHKCLDILYPSVYTEGLEKTTP--EPIENVLNPLPGKEDIVFLSINRYERKKNL------EL--AIYSLNSLRSRL 223 (390)
Q Consensus 154 ~~~~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~------~~--ll~a~~~l~~~~ 223 (390)
++.. .+++.+.+.+=....+..... ..+.+.++ ...++.+|+|+-+++..... .. -++.+..+.+.
T Consensus 153 f~~~-~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~--~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~~~- 228 (369)
T PF04464_consen 153 FGYP-EDKILVTGYPRNDYLFNKSKENRNRIKKKLG--IDKDKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLLKN- 228 (369)
T ss_dssp TT---GGGEEES--GGGHHHHHSTT-HHHHHHHHTT----SS-EEEEEE----GGG--GGSS----TT-HHHHHHHHTT-
T ss_pred hccC-cceEEEeCCCeEhHHhccCHHHHHHHHHHhc--cCCCCcEEEEeeccccccccccccccccccCHHHHHHHhCC-
Confidence 7632 445555544422222222221 23344443 22356688998776544332 11 22333322222
Q ss_pred ccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHH-cCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHh
Q psy12587 224 SDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKK-LKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIE 302 (390)
Q Consensus 224 ~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~-~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~E 302 (390)
++.+++-.. +........ ....++|.+...- .++.+++..||++|.- ++.+++|
T Consensus 229 ------~~~li~k~H------------p~~~~~~~~~~~~~~~i~~~~~~--~~~~~ll~~aDiLITD-----ySSi~fD 283 (369)
T PF04464_consen 229 ------NYVLIIKPH------------PNMKKKFKDFKEDNSNIIFVSDN--EDIYDLLAAADILITD-----YSSIIFD 283 (369)
T ss_dssp ------TEEEEE--S------------HHHHTT----TT-TTTEEE-TT---S-HHHHHHT-SEEEES-----S-THHHH
T ss_pred ------CcEEEEEeC------------chhhhchhhhhccCCcEEECCCC--CCHHHHHHhcCEEEEe-----chhHHHH
Confidence 477776552 222222222 2234677765433 3668999999999953 4678999
Q ss_pred hhhcCCCEEEe--cCCCc---ccc---eecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHH
Q psy12587 303 AMFCKRPVIAV--NSGGP---KES---VVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFS 374 (390)
Q Consensus 303 a~a~G~pvi~~--~~~~~---~e~---i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
++.+++|||.. |.... +.+ ..+...|..+. +.++|.++|..+++++. ...+..+...+.. -.|.-....
T Consensus 284 ~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~-~~~eL~~~i~~~~~~~~-~~~~~~~~~~~~~-~~~~Dg~s~ 360 (369)
T PF04464_consen 284 FLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY-NFEELIEAIENIIENPD-EYKEKREKFRDKF-FKYNDGNSS 360 (369)
T ss_dssp HGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES-SHHHHHHHHTTHHHHHH-HTHHHHHHHHHHH-STT--S-HH
T ss_pred HHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC-CHHHHHHHHHhhhhCCH-HHHHHHHHHHHHh-CCCCCchHH
Confidence 99999999963 33211 111 22334566676 89999999999887766 4333333333333 123333455
Q ss_pred HHHHHHH
Q psy12587 375 IQLNTIV 381 (390)
Q Consensus 375 ~~~~~~~ 381 (390)
+++.+.+
T Consensus 361 eri~~~I 367 (369)
T PF04464_consen 361 ERIVNYI 367 (369)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 139
>PLN02208 glycosyltransferase family protein
Probab=98.48 E-value=0.001 Score=61.08 Aligned_cols=231 Identities=10% Similarity=-0.029 Sum_probs=119.7
Q ss_pred HhcCcceEEEccHhHHH-HHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHH
Q psy12587 132 TTCKADKIVVNSEFTKS-VVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLE 210 (390)
Q Consensus 132 ~~~~ad~ii~~s~~~~~-~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~ 210 (390)
.+..+|.|++.|=...+ .+.+.+......++..|.+-.....-.........+.++. ...+..+++..|+... -..+
T Consensus 190 ~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~-~~~~sVvyvSfGS~~~-l~~~ 267 (442)
T PLN02208 190 GLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLSG-FPPKSVVFCSLGSQII-LEKD 267 (442)
T ss_pred hhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCCCCCCHHHHHHHHhc-CCCCcEEEEecccccc-CCHH
Confidence 46689999998854443 2333332110124554444321111001112334444431 1124677778888753 2445
Q ss_pred HHHHHHHHH-HhhcccccccceEEEEEcC-CCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEE
Q psy12587 211 LAIYSLNSL-RSRLSDEMKTHVKLVVAGG-YDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCII 288 (390)
Q Consensus 211 ~ll~a~~~l-~~~~~~~~~~~~~l~i~G~-~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v 288 (390)
.+.+.+..+ ....| +.+++--. +.... ....-+.+.+..+. .++.+.+++|+. ++++...+..
T Consensus 268 q~~e~~~~l~~s~~p------f~wv~r~~~~~~~~--~~~lp~~f~~r~~~----~g~~v~~W~PQ~---~iL~H~~v~~ 332 (442)
T PLN02208 268 QFQELCLGMELTGLP------FLIAVKPPRGSSTV--QEGLPEGFEERVKG----RGVVWGGWVQQP---LILDHPSIGC 332 (442)
T ss_pred HHHHHHHHHHhCCCc------EEEEEeCCCcccch--hhhCCHHHHHHHhc----CCcEeeccCCHH---HHhcCCccCe
Confidence 566666654 33333 44444311 11000 00011334444432 567788999998 4788887655
Q ss_pred eCCCCCCCCccHHhhhhcCCCEEEecCC----Ccccceec-Ccceeeec-----C-CHHHHHHHHHHHhcCChhHHHHHH
Q psy12587 289 YTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESVVD-GRTGFLCE-----S-NEEAFAKAMKKIVDNDGNIIQQFS 357 (390)
Q Consensus 289 ~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~~-~~~g~~~~-----~-~~~~l~~~i~~l~~~~~~~~~~~~ 357 (390)
+-++ +.-++++||+++|+|+|+.+.- ....++.+ -+.|+.+. . +.+++.++|.++++++.+..++++
T Consensus 333 FvtH--cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r 410 (442)
T PLN02208 333 FVNH--CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVR 410 (442)
T ss_pred EEcc--CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHH
Confidence 4443 3345899999999999996642 22233222 34565553 1 778999999999987632455555
Q ss_pred HHHHH---HHhhhcCHHHHHHHHHHHH
Q psy12587 358 QFGFN---RFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 358 ~~~~~---~~~~~~~~~~~~~~~~~~~ 381 (390)
+++++ .+.+.=|.....+++.+-+
T Consensus 411 ~~~~~~~~~~~~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 411 SNHTKLKEILVSPGLLTGYVDKFVEEL 437 (442)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 55543 3323334444444444443
No 140
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=98.25 E-value=1.8e-05 Score=61.58 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=60.7
Q ss_pred cCCCEEEEcccc-cchhHHHhh-cccEEEEeec------CCccccc--hhhhhhhhcccchhhHHHHHhcCcceEEEccH
Q psy12587 75 EKPDLVFCDLVS-ICIPILQAK-QFKVLFYCHY------PDQLLSK--QGSFLKSIYRFPLNKLEEWTTCKADKIVVNSE 144 (390)
Q Consensus 75 ~~~Dvi~~~~~~-~~~~~~~~~-~~~~v~~~h~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~ 144 (390)
+.||||++|..+ ..+.+.-.. ..|++.++-. .+..+.. ..........++.+......+..||..+++|.
T Consensus 65 f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~~y~~~g~d~~FDpe~p~~~~~~~~~r~rN~~~l~~l~~~D~~isPT~ 144 (171)
T PF12000_consen 65 FVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEFYYRASGADVGFDPEFPPSLDDRARLRMRNAHNLLALEQADAGISPTR 144 (171)
T ss_pred CCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEEEecCCCCcCCCCCCCCCCHHHHHHHHHHhHHHHHHHHhCCcCcCCCH
Confidence 899999999944 344444444 3787766542 1111100 11111122222223344556888999999999
Q ss_pred hHHHHHHHHhccCCCCceeecCCCCCCCCC
Q psy12587 145 FTKSVVQATFRSLDHKCLDILYPSVYTEGL 174 (390)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 174 (390)
+.++.+-..+. +++.||+-|||++.+
T Consensus 145 wQ~~~fP~~~r----~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 145 WQRSQFPAEFR----SKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHhCCHHHH----cCcEEeecccchhhc
Confidence 99998888765 799999999998764
No 141
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=6.9e-05 Score=71.03 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=105.8
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
+.+.++++-|+..+|.....+.-+..+.....+...+.+.+++.|...+...........+...++..+...+|.|+...
T Consensus 486 ~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nY 565 (750)
T COG0058 486 NALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNY 565 (750)
T ss_pred CcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCC
Confidence 56788999999999988776544443333221000124777888887776555555666666666665545678888776
Q ss_pred ChHHHHHHHHhcceEEeCCC--CCCCCccHHhhhhcCCCEEEecCCCccccee--cCcceeeecCCH
Q psy12587 273 SDAAKISLFKFCHCIIYTPS--NEHFGIVPIEAMFCKRPVIAVNSGGPKESVV--DGRTGFLCESNE 335 (390)
Q Consensus 273 ~~~e~~~~~~~adv~v~ps~--~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~--~~~~g~~~~~~~ 335 (390)
+-.-...++..||+-...|. .|..|++-+-++.-|.+-|+|--|...|+.+ .+.||+++-.+.
T Consensus 566 dvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 566 DVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETV 632 (750)
T ss_pred ChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCch
Confidence 55555678999999988776 6999999999999999999999999999986 788999997633
No 142
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=7.1e-05 Score=61.77 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=80.2
Q ss_pred EEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEE-EcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCCh
Q psy12587 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVV-AGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSD 274 (390)
Q Consensus 196 ~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i-~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~ 274 (390)
+++..|.-++. ...++.++.+.+.. +.++| +|++.+. .+.+.+.++++ +++.++-. .
T Consensus 161 ilI~lGGsDpk---~lt~kvl~~L~~~~-------~nl~iV~gs~~p~-------l~~l~k~~~~~---~~i~~~~~--~ 218 (318)
T COG3980 161 ILITLGGSDPK---NLTLKVLAELEQKN-------VNLHIVVGSSNPT-------LKNLRKRAEKY---PNINLYID--T 218 (318)
T ss_pred EEEEccCCChh---hhHHHHHHHhhccC-------eeEEEEecCCCcc-------hhHHHHHHhhC---CCeeeEec--c
Confidence 45556654432 24567777776653 34433 4544332 26677777665 67777644 4
Q ss_pred HHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE----ecCCCcccceec----CcceeeecCCHHHHHHHHHHHh
Q psy12587 275 AAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA----VNSGGPKESVVD----GRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 275 ~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~----~~~~~~~e~i~~----~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
.++..+|++||+.+... |.++.||+..|+|.++ .+.......+.. ...|+-. ..+.....+.++.
T Consensus 219 ~dma~LMke~d~aI~Aa-----GstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~l--~~~~~~~~~~~i~ 291 (318)
T COG3980 219 NDMAELMKEADLAISAA-----GSTLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYHL--KDLAKDYEILQIQ 291 (318)
T ss_pred hhHHHHHHhcchheecc-----chHHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCCC--chHHHHHHHHHhh
Confidence 45689999999998643 7899999999999433 222222221111 1122222 4566777788888
Q ss_pred cCChhHHHHHHHH
Q psy12587 347 DNDGNIIQQFSQF 359 (390)
Q Consensus 347 ~~~~~~~~~~~~~ 359 (390)
+|+. .+..+...
T Consensus 292 ~d~~-~rk~l~~~ 303 (318)
T COG3980 292 KDYA-RRKNLSFG 303 (318)
T ss_pred hCHH-Hhhhhhhc
Confidence 8888 66666543
No 143
>PLN03007 UDP-glucosyltransferase family protein
Probab=98.05 E-value=0.011 Score=55.24 Aligned_cols=82 Identities=12% Similarity=0.117 Sum_probs=54.9
Q ss_pred CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----Ccccceec-Ccceeee------
Q psy12587 263 SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESVVD-GRTGFLC------ 331 (390)
Q Consensus 263 ~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~~-~~~g~~~------ 331 (390)
+.++.+.+++|+. .+++.+++..+-++ +.-++++||+++|+|+|+.+.. .....+.+ -..|+-+
T Consensus 344 ~~g~~v~~w~PQ~---~iL~h~~v~~fvtH--~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 418 (482)
T PLN03007 344 GKGLIIRGWAPQV---LILDHQATGGFVTH--CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLV 418 (482)
T ss_pred cCCEEEecCCCHH---HHhccCccceeeec--CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccc
Confidence 3678889999987 58888876333232 3346899999999999996642 22222211 1122221
Q ss_pred ----cC-CHHHHHHHHHHHhcCC
Q psy12587 332 ----ES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 332 ----~~-~~~~l~~~i~~l~~~~ 349 (390)
.. +.+++.+++++++.++
T Consensus 419 ~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 419 KVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred ccccCcccHHHHHHHHHHHhcCc
Confidence 23 8899999999999876
No 144
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=98.04 E-value=1.6e-07 Score=74.42 Aligned_cols=89 Identities=15% Similarity=0.226 Sum_probs=59.9
Q ss_pred CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCc--------ccceecCcceeeecC--
Q psy12587 264 DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGP--------KESVVDGRTGFLCES-- 333 (390)
Q Consensus 264 ~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~--------~e~i~~~~~g~~~~~-- 333 (390)
.+|.+.++.++. .++|+.||++|.-+ .+.++.|++++|+|.|.-+.... ...+.+...+..+..
T Consensus 55 ~~v~~~~~~~~m--~~~m~~aDlvIs~a----G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVDNM--AELMAAADLVISHA----GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE 128 (167)
T ss_dssp CCCEEECSSSSH--HHHHHHHSEEEECS-----CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred CcEEEEechhhH--HHHHHHcCEEEeCC----CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence 679999998754 79999999999633 35689999999999988766551 222333334444433
Q ss_pred -CHHHHHHHHHHHhcCChhHHHHHHHH
Q psy12587 334 -NEEAFAKAMKKIVDNDGNIIQQFSQF 359 (390)
Q Consensus 334 -~~~~l~~~i~~l~~~~~~~~~~~~~~ 359 (390)
+++++.++|..+++++. ....+.++
T Consensus 129 ~~~~~L~~~i~~l~~~~~-~~~~~~~~ 154 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPE-KLKEMAKA 154 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH--SHHHCCC
T ss_pred CCHHHHHHHHHHHHcCcH-HHHHHHHH
Confidence 57889999999998887 55555444
No 145
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=97.98 E-value=0.00075 Score=55.62 Aligned_cols=295 Identities=11% Similarity=0.040 Sum_probs=137.0
Q ss_pred cchhhhHhh-HhhhhcCCceeec---CCccccccC---CCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhhcC
Q psy12587 4 ATARLTITA-TAWGATGPRTTAH---DHCFKETKD---GTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYSEK 76 (390)
Q Consensus 4 G~~~~~~~l-~~L~~~G~~V~~~---~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (390)
|+.+...++ ..+.+.||+++++ ...+..... ..+.+..+ . ...+...++.. ..
T Consensus 2 GVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~dsH~~~~~si~k~---~-------~~e~de~v~~v----------N~ 61 (355)
T PF11440_consen 2 GVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPDSHDSKSFSIPKY---L-------AKEYDETVKKV----------ND 61 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTTSSS-TTTEEEE----T-------TTHHHHHHHHH----------TS
T ss_pred CccccHHHHHHHHHhcCCeeEEEEecccccCCccccccceeeeehh---h-------HHHHHHHHHHh----------hc
Confidence 788999999 9999999999887 222211111 11122211 0 01111222211 89
Q ss_pred CCEEEEcccccchh-------HHHhh-c----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccH
Q psy12587 77 PDLVFCDLVSICIP-------ILQAK-Q----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSE 144 (390)
Q Consensus 77 ~Dvi~~~~~~~~~~-------~~~~~-~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~ 144 (390)
+|++.+.+.++.-. .-+.. + +++|...|+..... ..+.. . ..-+++.+|.|.+.|.
T Consensus 62 yDI~m~nSvPa~~vqE~~iNnY~kii~~Ik~~ik~V~~~Hdh~~ls------I~rn~-----~-le~~m~~~DvIfshs~ 129 (355)
T PF11440_consen 62 YDIVMFNSVPATKVQEAIINNYEKIIKKIKPSIKVVGFMHDHNKLS------IDRNP-----Y-LEGTMNEMDVIFSHSD 129 (355)
T ss_dssp SSEEEEEE--BTTS-HHHHHHHHHHHHCS-TTSEEEEEE---SHHH------HTTBS-----S-HHHHHHH-SEEEES-T
T ss_pred cCEEEEecccCchHHHHHHHHHHHHHHhccccceeEEEeeccceee------ccccc-----c-HHHHHHhhcEEEeccc
Confidence 99999988543210 11111 1 56788888643211 11110 1 1334778999999875
Q ss_pred h---HHHHHHHHhccC--CCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEE---EEeecccccCCHHHHHHHH
Q psy12587 145 F---TKSVVQATFRSL--DHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVF---LSINRYERKKNLELAIYSL 216 (390)
Q Consensus 145 ~---~~~~~~~~~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i---~~~g~~~~~K~~~~ll~a~ 216 (390)
. .......++|.. ..+++.-.|...+.+.. .+-...+..+. .+...+.. .|+||...+||+..+++..
T Consensus 130 ~g~f~kv~m~~l~Ps~~~l~~~i~~~p~v~nfqpp--~~i~~~Rstyw--kd~se~nmnv~~yigR~Tt~kG~~~mfD~h 205 (355)
T PF11440_consen 130 NGWFSKVLMKELLPSKVSLFDRIKKFPMVFNFQPP--MDINKYRSTYW--KDVSEKNMNVNRYIGRQTTWKGPRRMFDLH 205 (355)
T ss_dssp TSHHHHTHHHHHS-SS--SSS-------EEE------B-HHHHHHHH-----GGGSEEEEEEEE--SSGGG-HHHHHHHH
T ss_pred cchHHHHHHHhhccccCchhhhhhhcceeeecCCc--ccHHHHHHHHh--hhhHhhhcccceeeeeeeeecCcHHHhhhH
Confidence 3 222233454421 12334444433222111 11112222221 22233444 7999999999999999999
Q ss_pred HHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHH-------------HcCC--CCcEEEecCCChHHHHHHH
Q psy12587 217 NSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVK-------------KLKL--SDNVLFLTSPSDAAKISLF 281 (390)
Q Consensus 217 ~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~-------------~~~l--~~~v~~~g~~~~~e~~~~~ 281 (390)
....+. + +++-++-|-.... ..+.-.-+ +..+ ...+.++|..-++|+.+.|
T Consensus 206 ~~~lK~-~-----~~~t~~~GierS~--------A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~M 271 (355)
T PF11440_consen 206 EKILKP-A-----GFKTIMEGIERSP--------AKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERM 271 (355)
T ss_dssp HHTTTT-T-----T-EEEEE---SST--------HHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHH
T ss_pred HHhcCC-c-----chhHHhhhhhcCC--------ceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHH
Confidence 887665 4 3788887744332 21111100 1111 2347788888888999999
Q ss_pred HhcceEEeCCC------CCCCCccHHhhhhcCCCEEE-ecCCCc-------ccceecCcceeeecC-CHHHHHHHHHHHh
Q psy12587 282 KFCHCIIYTPS------NEHFGIVPIEAMFCKRPVIA-VNSGGP-------KESVVDGRTGFLCES-NEEAFAKAMKKIV 346 (390)
Q Consensus 282 ~~adv~v~ps~------~e~~~~~~~Ea~a~G~pvi~-~~~~~~-------~e~i~~~~~g~~~~~-~~~~l~~~i~~l~ 346 (390)
+.+-.....+. .+..-.+-+|..|||+-.|- ...|.. ..++......+.++. |.++-.+.|.++.
T Consensus 272 aks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T~ekl~E~a 351 (355)
T PF11440_consen 272 AKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLESTVEKLIEVA 351 (355)
T ss_dssp HTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHHHHHHHHHHH
T ss_pred hhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccchHHHHHHHHHHHh
Confidence 99877765544 23455678999999965555 333322 233433334455666 8888887777775
Q ss_pred cC
Q psy12587 347 DN 348 (390)
Q Consensus 347 ~~ 348 (390)
++
T Consensus 352 ~~ 353 (355)
T PF11440_consen 352 NN 353 (355)
T ss_dssp T-
T ss_pred cc
Confidence 54
No 146
>KOG1050|consensus
Probab=97.88 E-value=0.0056 Score=59.10 Aligned_cols=295 Identities=13% Similarity=0.141 Sum_probs=173.8
Q ss_pred HHhh--cCCCEEEEcccccchhH--HHhh--cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccH
Q psy12587 71 AWYS--EKPDLVFCDLVSICIPI--LQAK--QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSE 144 (390)
Q Consensus 71 ~~~~--~~~Dvi~~~~~~~~~~~--~~~~--~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~ 144 (390)
.+++ ..-|+|++|..+..+.. .+-. +.++-+..|.+.+......... .+.-.-..+-.+|.+-..+.
T Consensus 133 ~ive~~~~~d~vwihdyhlmllp~~lr~~~~~~~ig~flhspfpssEi~r~lp-------~r~eIl~gll~~~~i~f~t~ 205 (732)
T KOG1050|consen 133 KIVEVYEEGDIVWIHDYHLMLLPQMLRERFNSAKIGFFLHSPFPSSEIYRCLP-------VRKEILRGLLYDDLLGFHTD 205 (732)
T ss_pred HHHHhccCCCcEEEEcchhhccchhhhcccccceEEEeccCCCChHHHHHhcc-------cHHHHHHhhhccCccccccc
Confidence 4555 78899999997644422 2222 2555577776544222111100 00111122334555544444
Q ss_pred hHHHHHHHH------------hcc--C----CCCceeecCCCCCCCCCCCCCccc----hhhhcCCCCCCCCeEEEEeec
Q psy12587 145 FTKSVVQAT------------FRS--L----DHKCLDILYPSVYTEGLEKTTPEP----IENVLNPLPGKEDIVFLSINR 202 (390)
Q Consensus 145 ~~~~~~~~~------------~~~--~----~~~~~~vi~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~i~~~g~ 202 (390)
..+..+... ++. + +...+..+|-|++...+....... -...++ -+..++.+++.+-+
T Consensus 206 d~arhFls~c~R~l~~~~~s~~~~~~v~~rgr~~~v~~~pigid~~r~v~~~~~~~~~~~~~ei~-~~~~g~klilgvD~ 284 (732)
T KOG1050|consen 206 DYARHFLSTCSRLLGLEVASKFPTAGVSGRGRDVSVKALPIGIDVQRFVKLLELPYVGSKGMEIK-EPFKGKKLILGVDR 284 (732)
T ss_pred cHHHHHHHHHHHHHHhhhhccCCcceEEeccceeeeeecccccchHHhhccccchhHHHHHHHHh-hhccCCceEecccc
Confidence 333333321 000 0 012456677788877665432210 111111 02246778888889
Q ss_pred ccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHH---HHHHHHHHHHc----C---CCCcEEEecCC
Q psy12587 203 YERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEY---YKELGVLVKKL----K---LSDNVLFLTSP 272 (390)
Q Consensus 203 ~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y---~~~~~~~~~~~----~---l~~~v~~~g~~ 272 (390)
+...||...=+.++.++.+++|+ ....+.++.+...... ++.+| ...+...+.+. + -.+-+.+...+
T Consensus 285 ~d~~kg~~~Kl~a~e~~L~~~pe-~~~kVvliqi~~~~~~--~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~ 361 (732)
T KOG1050|consen 285 LDSIKGIQLKLLAFEQFLEEYPE-WIDKVVLIQIENPKRT--DGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDL 361 (732)
T ss_pred cccccCchHHHHHHHHHHHhChh-hhceEEEEEEecCCcc--cchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccC
Confidence 99999999999999999888885 3345566555543322 12121 12222222211 1 12233456778
Q ss_pred ChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcC----CCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 273 SDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCK----RPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 273 ~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G----~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
+..++.++++-+|+++..+..+|..++.+|+..|. .+.|.+...|..+.+++ ...++.+ +.++++.+|..+++
T Consensus 362 ~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d--~aivvnpw~~~~~~~~i~~al~ 439 (732)
T KOG1050|consen 362 PFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLED--AAIVVNPWDGDEFAILISKALT 439 (732)
T ss_pred CHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccccccccc--cCEEECCcchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999873 77888888787777644 3467888 99999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy12587 348 NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNT 379 (390)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
.+++.++..-...+..+ ..++...++..+..
T Consensus 440 ~s~~e~~~r~~~~~~~v-~~~~~~~W~~~~~~ 470 (732)
T KOG1050|consen 440 MSDEERELREPKHYKYV-STHDVVYWAKSFLQ 470 (732)
T ss_pred cCHHHHhhcchhhhhhh-cchhHHHHHHHHHH
Confidence 98833433333334443 44555555555554
No 147
>PLN02210 UDP-glucosyl transferase
Probab=97.85 E-value=0.024 Score=52.54 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=55.3
Q ss_pred CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----Ccccceec-Ccceeeec------
Q psy12587 264 DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESVVD-GRTGFLCE------ 332 (390)
Q Consensus 264 ~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~~-~~~g~~~~------ 332 (390)
++..+.+++|+. ++++.+++..+-++ +.-++++||+++|+|+|+.+.. .....+.+ -+.|+.+.
T Consensus 324 ~~g~v~~w~PQ~---~iL~h~~vg~FitH--~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~ 398 (456)
T PLN02210 324 GQGVVLEWSPQE---KILSHMAISCFVTH--CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDG 398 (456)
T ss_pred CCeEEEecCCHH---HHhcCcCcCeEEee--CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCC
Confidence 344567999988 47888874333232 2335899999999999996642 22333333 35666652
Q ss_pred C-CHHHHHHHHHHHhcCC
Q psy12587 333 S-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 333 ~-~~~~l~~~i~~l~~~~ 349 (390)
. +.+++++++++++.++
T Consensus 399 ~~~~~~l~~av~~~m~~~ 416 (456)
T PLN02210 399 ELKVEEVERCIEAVTEGP 416 (456)
T ss_pred cCCHHHHHHHHHHHhcCc
Confidence 3 7899999999999764
No 148
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=0.007 Score=49.74 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=104.9
Q ss_pred cCCCEEEEcccccchhHHHhhc---ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHH
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQ---FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQ 151 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~---~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 151 (390)
..||+++..+..+......+++ .+.++.+.+|..- .+..|.|+++-....+...
T Consensus 69 ~~Pdl~I~aGrrta~l~~~lkk~~~~~~vVqI~~Prlp-----------------------~~~fDlvivp~HD~~~~~s 125 (329)
T COG3660 69 QRPDLIITAGRRTAPLAFYLKKKFGGIKVVQIQDPRLP-----------------------YNHFDLVIVPYHDWREELS 125 (329)
T ss_pred CCCceEEecccchhHHHHHHHHhcCCceEEEeeCCCCC-----------------------cccceEEeccchhhhhhhh
Confidence 6699999988655554444433 4555555554221 2235888888776665533
Q ss_pred HHhccCCCCceee---cCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCH--H---HHHHHHHHHHhhc
Q psy12587 152 ATFRSLDHKCLDI---LYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNL--E---LAIYSLNSLRSRL 223 (390)
Q Consensus 152 ~~~~~~~~~~~~v---i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~--~---~ll~a~~~l~~~~ 223 (390)
.. ..++.- .+|.|....... ..+..+..+ |....++-+++|.-.+.-.+ + .+..++.+..++.
T Consensus 126 ~~-----~~Nilpi~Gs~h~Vt~~~lAa-~~e~~~~~~---p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~ 196 (329)
T COG3660 126 DQ-----GPNILPINGSPHNVTSQRLAA-LREAFKHLL---PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQ 196 (329)
T ss_pred cc-----CCceeeccCCCCcccHHHhhh-hHHHHHhhC---CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhC
Confidence 21 123322 233343332221 112222222 55567788888876544333 2 2333333333321
Q ss_pred ccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHH-cCCCCcEEEecC-CChHHHHHHHHhcceEEeCCCCCCCCccHH
Q psy12587 224 SDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKK-LKLSDNVLFLTS-PSDAAKISLFKFCHCIIYTPSNEHFGIVPI 301 (390)
Q Consensus 224 ~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~-~~l~~~v~~~g~-~~~~e~~~~~~~adv~v~ps~~e~~~~~~~ 301 (390)
...|.+.-+-... +.+++.++. +.-...+.+-+. ....-..++|+.||.++.+...- .-..
T Consensus 197 ------g~~~lisfSRRTp--------~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSi---nM~s 259 (329)
T COG3660 197 ------GGSFLISFSRRTP--------DTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSI---NMCS 259 (329)
T ss_pred ------CceEEEEeecCCc--------HHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchh---hhhH
Confidence 2555554443332 677777766 443455555443 12223468999999999765421 2357
Q ss_pred hhhhcCCCEEEecCC
Q psy12587 302 EAMFCKRPVIAVNSG 316 (390)
Q Consensus 302 Ea~a~G~pvi~~~~~ 316 (390)
||.+.|+||-+-...
T Consensus 260 EAasTgkPv~~~~~~ 274 (329)
T COG3660 260 EAASTGKPVFILEPP 274 (329)
T ss_pred HHhccCCCeEEEecC
Confidence 999999999885433
No 149
>PLN00414 glycosyltransferase family protein
Probab=97.79 E-value=0.0041 Score=57.26 Aligned_cols=213 Identities=8% Similarity=-0.040 Sum_probs=112.7
Q ss_pred hcCcceEEEccHhHHH-HHHHHhccCCCCceeecCCCCCCCCCC--CCCccchhhhcCCCCCCCCeEEEEeecccccCCH
Q psy12587 133 TCKADKIVVNSEFTKS-VVQATFRSLDHKCLDILYPSVYTEGLE--KTTPEPIENVLNPLPGKEDIVFLSINRYERKKNL 209 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~-~~~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~ 209 (390)
...|+.|++.|=...+ .+.+.+......++.-|.+-+....-. .......-+.++.-+ .+..+.+.+|+.... ..
T Consensus 190 ~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~-~~sVvyvsfGS~~~~-~~ 267 (446)
T PLN00414 190 LKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFE-PGSVVFCAFGTQFFF-EK 267 (446)
T ss_pred hccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCC-CCceEEEeecccccC-CH
Confidence 5678999998844433 233333211012455554433211100 001122334554223 255677778876533 33
Q ss_pred HHHHHHHHHHHhhcccccccceEEEEEcC-CCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEE
Q psy12587 210 ELAIYSLNSLRSRLSDEMKTHVKLVVAGG-YDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCII 288 (390)
Q Consensus 210 ~~ll~a~~~l~~~~~~~~~~~~~l~i~G~-~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v 288 (390)
+.+.+.+..|...+. ++-.++... +... . ....-+.+++.++. ....+.+++|+. .+++.+.+..
T Consensus 268 ~q~~e~a~gL~~s~~-----~Flwvvr~~~~~~~-~-~~~lp~~f~~r~~~----~g~vv~~w~PQ~---~vL~h~~v~~ 333 (446)
T PLN00414 268 DQFQEFCLGMELTGL-----PFLIAVMPPKGSST-V-QEALPEGFEERVKG----RGIVWEGWVEQP---LILSHPSVGC 333 (446)
T ss_pred HHHHHHHHHHHHcCC-----CeEEEEecCCCccc-c-hhhCChhHHHHhcC----CCeEEeccCCHH---HHhcCCccce
Confidence 556666665544432 233333321 1100 0 00111445555543 345667999998 4787775432
Q ss_pred eCCCCCCCCccHHhhhhcCCCEEEecCC----Ccccce-ecCcceeeec-----C-CHHHHHHHHHHHhcCChhHHHHHH
Q psy12587 289 YTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESV-VDGRTGFLCE-----S-NEEAFAKAMKKIVDNDGNIIQQFS 357 (390)
Q Consensus 289 ~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i-~~~~~g~~~~-----~-~~~~l~~~i~~l~~~~~~~~~~~~ 357 (390)
+-++ +.-++++||+++|+|+|+.+.. ....++ +.-+.|+.+. . +.+++.+++++++.++.+..++++
T Consensus 334 fvtH--~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r 411 (446)
T PLN00414 334 FVNH--CGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVK 411 (446)
T ss_pred EEec--CchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHH
Confidence 2222 3346899999999999996642 233344 2335566652 3 889999999999987532556666
Q ss_pred HHHHHH
Q psy12587 358 QFGFNR 363 (390)
Q Consensus 358 ~~~~~~ 363 (390)
+++++.
T Consensus 412 ~~a~~~ 417 (446)
T PLN00414 412 RNHKKL 417 (446)
T ss_pred HHHHHH
Confidence 665544
No 150
>PLN02670 transferase, transferring glycosyl groups
Probab=97.78 E-value=0.00072 Score=62.41 Aligned_cols=116 Identities=10% Similarity=0.037 Sum_probs=76.5
Q ss_pred cEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC----CCcccceecCcceeeec------C-
Q psy12587 265 NVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS----GGPKESVVDGRTGFLCE------S- 333 (390)
Q Consensus 265 ~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~----~~~~e~i~~~~~g~~~~------~- 333 (390)
.+.+.+++|+. ++++...+..+-++ +.-++++||+++|+|+|+.+. ......+...+.|+.+. .
T Consensus 340 G~vv~~W~PQ~---~IL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~ 414 (472)
T PLN02670 340 GMIHVGWVPQV---KILSHESVGGFLTH--CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSF 414 (472)
T ss_pred CeEEeCcCCHH---HHhcCcccceeeec--CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcC
Confidence 36778999987 57877777443332 344689999999999999664 22333444455676663 2
Q ss_pred CHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhh
Q psy12587 334 NEEAFAKAMKKIVDNDG-NIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNML 385 (390)
Q Consensus 334 ~~~~l~~~i~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
+.+++.++|.+++.+++ +.+++-.+..++.+.++=+.+..++.+++.+.+..
T Consensus 415 ~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 415 TSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred cHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 68999999999997752 02222223333444455667777787777776655
No 151
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.78 E-value=0.0067 Score=56.00 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=56.6
Q ss_pred CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----CcccceecC-cceeeecC--CH
Q psy12587 263 SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESVVDG-RTGFLCES--NE 335 (390)
Q Consensus 263 ~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~~~-~~g~~~~~--~~ 335 (390)
.++..+.+++|+.+ ++...++..+-++ +.-++++||+++|+|+|+.+.. .....+.+. +.|+.+.. +.
T Consensus 323 ~~~g~v~~w~PQ~~---iL~h~~v~~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 397 (451)
T PLN02410 323 SGRGYIVKWAPQKE---VLSHPAVGGFWSH--CGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDR 397 (451)
T ss_pred cCCeEEEccCCHHH---HhCCCccCeeeec--CchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccH
Confidence 35667779999984 7777666332222 2345899999999999996642 223333332 46766633 89
Q ss_pred HHHHHHHHHHhcCC
Q psy12587 336 EAFAKAMKKIVDND 349 (390)
Q Consensus 336 ~~l~~~i~~l~~~~ 349 (390)
+++++++.+++.++
T Consensus 398 ~~v~~av~~lm~~~ 411 (451)
T PLN02410 398 GAVERAVKRLMVEE 411 (451)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999775
No 152
>PLN02764 glycosyltransferase family protein
Probab=97.78 E-value=0.0059 Score=56.09 Aligned_cols=238 Identities=8% Similarity=-0.010 Sum_probs=123.1
Q ss_pred hcCcceEEEccHhHHH-HHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHH
Q psy12587 133 TCKADKIVVNSEFTKS-VVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLEL 211 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~-~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ 211 (390)
++.++.|++.|=...+ .+.+.+......++..|.+-+....-........-+.++.-+ .+..+++.+|+... -..+.
T Consensus 197 ~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~-~~sVvyvsfGS~~~-~~~~q 274 (453)
T PLN02764 197 LMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDKTRELEERWVKWLSGYE-PDSVVFCALGSQVI-LEKDQ 274 (453)
T ss_pred hccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCccccccchhHHHHHHhCCC-CCceEEEeeccccc-CCHHH
Confidence 5678899988743333 233333211013455555432111000001123334443122 35577788888743 23355
Q ss_pred HHHHHHHHHhhcccccccceEEEEEcC-CCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeC
Q psy12587 212 AIYSLNSLRSRLSDEMKTHVKLVVAGG-YDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYT 290 (390)
Q Consensus 212 ll~a~~~l~~~~~~~~~~~~~l~i~G~-~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~p 290 (390)
+.+.+..|..... ++..++-.. +... . ....-+.++...+. ..+.+.+++|+.+ +++...+..+-
T Consensus 275 ~~ela~gL~~s~~-----pflwv~r~~~~~~~-~-~~~lp~~f~~r~~g----rG~v~~~W~PQ~~---vL~h~~v~~Fv 340 (453)
T PLN02764 275 FQELCLGMELTGS-----PFLVAVKPPRGSST-I-QEALPEGFEERVKG----RGVVWGGWVQQPL---ILSHPSVGCFV 340 (453)
T ss_pred HHHHHHHHHhCCC-----CeEEEEeCCCCCcc-h-hhhCCcchHhhhcc----CCcEEeCCCCHHH---HhcCcccCeEE
Confidence 5555555544433 244444311 1100 0 00011233333332 3467779999984 77776553322
Q ss_pred CCCCCCCccHHhhhhcCCCEEEecCC----Cccccee-cCcceeeec-----C-CHHHHHHHHHHHhcCChhHHHHHHHH
Q psy12587 291 PSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESVV-DGRTGFLCE-----S-NEEAFAKAMKKIVDNDGNIIQQFSQF 359 (390)
Q Consensus 291 s~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~-~~~~g~~~~-----~-~~~~l~~~i~~l~~~~~~~~~~~~~~ 359 (390)
++ +.-++++||+++|+|+|+.+.. .....+. .-+.|+.+. . +.+++.++++++++++.+..++++++
T Consensus 341 tH--~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~ 418 (453)
T PLN02764 341 SH--CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKN 418 (453)
T ss_pred ec--CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 32 3456899999999999997652 2233342 223455431 3 88999999999998752145555555
Q ss_pred HH---HHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 360 GF---NRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 360 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
++ +.+.+.=|.....+++.+.+.+..++.
T Consensus 419 a~~~~~~~~~~GSS~~~l~~lv~~~~~~~~~~ 450 (453)
T PLN02764 419 HTKWRETLASPGLLTGYVDNFIESLQDLVSGT 450 (453)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccc
Confidence 44 344333345556666666666655443
No 153
>PRK14986 glycogen phosphorylase; Provisional
Probab=97.62 E-value=0.00076 Score=65.05 Aligned_cols=148 Identities=13% Similarity=0.098 Sum_probs=109.1
Q ss_pred CCeEEEEeecccccCCHHH-HHHH---HHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHH----HcCCCC
Q psy12587 193 EDIVFLSINRYERKKNLEL-AIYS---LNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVK----KLKLSD 264 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~-ll~a---~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~----~~~l~~ 264 (390)
+.+.++++-|+..+|...+ ++.. +.++++. |+.......+++.|...+.........+.+...++ .-.+.+
T Consensus 542 ~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~ 620 (815)
T PRK14986 542 KALFDVQIKRIHEYKRQLMNVLHVITRYNRIKAD-PDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGD 620 (815)
T ss_pred ccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhC-CCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcC
Confidence 5678899999999999888 5554 5555543 21011238899999887765555555555555555 112234
Q ss_pred --cEEEecCCChHHHHHHHHhcceEEeCCC--CCCCCccHHhhhhcCCCEEEecCCCcccceec--CcceeeecCCHHHH
Q psy12587 265 --NVLFLTSPSDAAKISLFKFCHCIIYTPS--NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD--GRTGFLCESNEEAF 338 (390)
Q Consensus 265 --~v~~~g~~~~~e~~~~~~~adv~v~ps~--~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~--~~~g~~~~~~~~~l 338 (390)
+|.|+...+-.-...++..||+....|. .|..|++=+-+|.-|.+.+++--|...|+.++ ++||+++-.+.+++
T Consensus 621 ~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~ev 700 (815)
T PRK14986 621 KLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEEV 700 (815)
T ss_pred ceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHHHH
Confidence 6888877655555689999999998777 69999999999999999999999999999876 78999997666666
Q ss_pred HHH
Q psy12587 339 AKA 341 (390)
Q Consensus 339 ~~~ 341 (390)
.+.
T Consensus 701 ~~~ 703 (815)
T PRK14986 701 EAL 703 (815)
T ss_pred HHH
Confidence 554
No 154
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.58 E-value=0.00024 Score=67.17 Aligned_cols=158 Identities=14% Similarity=0.178 Sum_probs=81.0
Q ss_pred CCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC
Q psy12587 192 KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS 271 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~ 271 (390)
++..+++..|+... ...+..++++.+..++.|. +++..-.+... .. +++|+.+..+
T Consensus 275 ~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~~~------~~iW~~~~~~~--------~~---------l~~n~~~~~W 330 (500)
T PF00201_consen 275 KKGVVYVSFGSIVS-SMPEEKLKEIAEAFENLPQ------RFIWKYEGEPP--------EN---------LPKNVLIVKW 330 (500)
T ss_dssp TTEEEEEE-TSSST-T-HHHHHHHHHHHHHCSTT------EEEEEETCSHG--------CH---------HHTTEEEESS
T ss_pred CCCEEEEecCcccc-hhHHHHHHHHHHHHhhCCC------ccccccccccc--------cc---------ccceEEEecc
Confidence 45677888888753 2344445555554445442 33333322211 11 2478899999
Q ss_pred CChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC-C---CcccceecCcceeeecC---CHHHHHHHHHH
Q psy12587 272 PSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS-G---GPKESVVDGRTGFLCES---NEEAFAKAMKK 344 (390)
Q Consensus 272 ~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~-~---~~~e~i~~~~~g~~~~~---~~~~l~~~i~~ 344 (390)
+|+. ++++...+-++-+. |.-+++.||+.+|+|+|+-+. + .....+.+.+.|..++. +.+++.++|.+
T Consensus 331 ~PQ~---~lL~hp~v~~fitH--gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ 405 (500)
T PF00201_consen 331 LPQN---DLLAHPRVKLFITH--GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIRE 405 (500)
T ss_dssp --HH---HHHTSTTEEEEEES----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHH
T ss_pred ccch---hhhhcccceeeeec--cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHH
Confidence 9987 57876655333232 334589999999999999765 2 23334445556777653 88999999999
Q ss_pred HhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy12587 345 IVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNT 379 (390)
Q Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
+++|+. ..++..+-+...-.+..++...+-.|.|
T Consensus 406 vl~~~~-y~~~a~~ls~~~~~~p~~p~~~~~~~ie 439 (500)
T PF00201_consen 406 VLENPS-YKENAKRLSSLFRDRPISPLERAVWWIE 439 (500)
T ss_dssp HHHSHH-HHHHHHHHHHTTT---------------
T ss_pred HHhhhH-HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999876 5544443332222223444444444444
No 155
>PLN02562 UDP-glycosyltransferase
Probab=97.52 E-value=0.0049 Score=56.95 Aligned_cols=88 Identities=13% Similarity=0.181 Sum_probs=61.7
Q ss_pred CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC----CCcccceec-CcceeeecC-CHH
Q psy12587 263 SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS----GGPKESVVD-GRTGFLCES-NEE 336 (390)
Q Consensus 263 ~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~----~~~~e~i~~-~~~g~~~~~-~~~ 336 (390)
++++.+.+++|+. .+++..++..+-++ +.-++++||+.+|+|+|+.+. ......+.+ -+.|+-+.. +.+
T Consensus 327 ~~~~~v~~w~PQ~---~iL~h~~v~~fvtH--~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 401 (448)
T PLN02562 327 SKQGKVVSWAPQL---EVLKHQAVGCYLTH--CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQK 401 (448)
T ss_pred ccCEEEEecCCHH---HHhCCCccceEEec--CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHH
Confidence 3678888999988 57877775333332 334689999999999999664 233334433 245666666 899
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q psy12587 337 AFAKAMKKIVDNDGNIIQQF 356 (390)
Q Consensus 337 ~l~~~i~~l~~~~~~~~~~~ 356 (390)
++++++.+++.+++ .+++.
T Consensus 402 ~l~~~v~~~l~~~~-~r~~a 420 (448)
T PLN02562 402 EVEEGLRKVMEDSG-MGERL 420 (448)
T ss_pred HHHHHHHHHhCCHH-HHHHH
Confidence 99999999998766 44443
No 156
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=97.50 E-value=0.014 Score=55.88 Aligned_cols=207 Identities=15% Similarity=0.141 Sum_probs=120.1
Q ss_pred HHHhcCcceEEEccHhHHHHHHHH----hccCCCCceeecCCCCCCCCCCCCCc-------------------cch----
Q psy12587 130 EWTTCKADKIVVNSEFTKSVVQAT----FRSLDHKCLDILYPSVYTEGLEKTTP-------------------EPI---- 182 (390)
Q Consensus 130 ~~~~~~ad~ii~~s~~~~~~~~~~----~~~~~~~~~~vi~~~~~~~~~~~~~~-------------------~~~---- 182 (390)
..++..+..+-.+|.-..+.+++. |..+.++++.-+-|||.+..+-.... ..+
T Consensus 326 ~LAl~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~ 405 (713)
T PF00343_consen 326 NLALRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLE 405 (713)
T ss_dssp HHHHHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGG
T ss_pred HHHHHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccccCHHHHHHHH
Confidence 445777888889998877766542 22233678999999998766532100 000
Q ss_pred ---------------------------hhhcCC-CCCCCCeEEEEeecccccCCHHH-H---HHHHHHHHhhcccccccc
Q psy12587 183 ---------------------------ENVLNP-LPGKEDIVFLSINRYERKKNLEL-A---IYSLNSLRSRLSDEMKTH 230 (390)
Q Consensus 183 ---------------------------~~~~~~-l~~~~~~~i~~~g~~~~~K~~~~-l---l~a~~~l~~~~~~~~~~~ 230 (390)
.+..+. +. .+.+..+++-|+..+|...+ + +.-+.++++.. ......
T Consensus 406 ~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ld-p~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p-~~~~~P 483 (713)
T PF00343_consen 406 KFADDEEFQEELREVKQENKERLAEYIKKRTGVELD-PDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNP-NKKIRP 483 (713)
T ss_dssp GGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS----TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHST-TSCCS-
T ss_pred HhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cchhhhhhhhhcccccccCcccccHHHHHHHHHhcc-cCCCCC
Confidence 000010 22 25677899999999999887 3 34555555431 111124
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHH----cCCCC--cEEEecCCChHHHHHHHHhcceEEeCCC--CCCCCccHHh
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKK----LKLSD--NVLFLTSPSDAAKISLFKFCHCIIYTPS--NEHFGIVPIE 302 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~----~~l~~--~v~~~g~~~~~e~~~~~~~adv~v~ps~--~e~~~~~~~E 302 (390)
+.+++.|...+....++...+.+.+.++. -.+.+ +|.|+...+-.-...++..+|+-+..|+ .|..|++-+-
T Consensus 484 v~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK 563 (713)
T PF00343_consen 484 VQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMK 563 (713)
T ss_dssp EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHH
T ss_pred eEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcch
Confidence 88999998877644444444444444432 12333 6888887766666789999999999876 6999999999
Q ss_pred hhhcCCCEEEecCCCcccceec--CcceeeecCCHHHH
Q psy12587 303 AMFCKRPVIAVNSGGPKESVVD--GRTGFLCESNEEAF 338 (390)
Q Consensus 303 a~a~G~pvi~~~~~~~~e~i~~--~~~g~~~~~~~~~l 338 (390)
+|.-|.+.+++--|...|+.+. .+|.+++-.+.+++
T Consensus 564 ~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~ev 601 (713)
T PF00343_consen 564 AAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAEEV 601 (713)
T ss_dssp HHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHHH
T ss_pred hhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHHHH
Confidence 9999999999998998888753 34677774455554
No 157
>KOG4626|consensus
Probab=97.47 E-value=0.0058 Score=56.41 Aligned_cols=182 Identities=13% Similarity=0.193 Sum_probs=123.8
Q ss_pred CCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEE
Q psy12587 189 LPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVL 267 (390)
Q Consensus 189 l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~ 267 (390)
+|+ +.+++..+..+ .|--...++.+..+.++.|+ -.|++.-...... ..++..++++|++ ++|.
T Consensus 755 Lp~-d~vvf~~FNqL--yKidP~~l~~W~~ILk~VPn-----S~LwllrfPa~ge-------~rf~ty~~~~Gl~p~rii 819 (966)
T KOG4626|consen 755 LPE-DAVVFCNFNQL--YKIDPSTLQMWANILKRVPN-----SVLWLLRFPAVGE-------QRFRTYAEQLGLEPDRII 819 (966)
T ss_pred CCC-CeEEEeechhh--hcCCHHHHHHHHHHHHhCCc-----ceeEEEeccccch-------HHHHHHHHHhCCCcccee
Confidence 344 66665555544 45556789999999998885 5565544221110 7889999999984 6788
Q ss_pred EecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCccc-----ceecCcceeeecCCHHHHHHHH
Q psy12587 268 FLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKE-----SVVDGRTGFLCESNEEAFAKAM 342 (390)
Q Consensus 268 ~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e-----~i~~~~~g~~~~~~~~~l~~~i 342 (390)
|..-...+|-..-.+.+|+++-+....| -.+-+|.+.+|+|+|+-+...... .+..-+.|-++..+.++..+.-
T Consensus 820 fs~va~k~eHvrr~~LaDv~LDTplcnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~ia 898 (966)
T KOG4626|consen 820 FSPVAAKEEHVRRGQLADVCLDTPLCNG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIA 898 (966)
T ss_pred eccccchHHHHHhhhhhhhcccCcCcCC-cccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHH
Confidence 8777777777788889999987665443 345688999999999966432211 1111123333333888999998
Q ss_pred HHHhcCChhHHHHHHHHHHHHH--hhhcCHHHHHHHHHHHHHhhhhh
Q psy12587 343 KKIVDNDGNIIQQFSQFGFNRF--NEKFSFQAFSIQLNTIVNNMLDK 387 (390)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
.++-.|.+ ..+.++..-+..- .--|+-..++..+++.|.++.++
T Consensus 899 V~Latd~~-~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~ 944 (966)
T KOG4626|consen 899 VRLATDKE-YLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKK 944 (966)
T ss_pred HHhhcCHH-HHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHH
Confidence 99988888 7777776554432 23578888888888888877654
No 158
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.38 E-value=0.0024 Score=61.82 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=106.9
Q ss_pred CCeEEEEeecccccCCHHH-H---HHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHc----CCCC
Q psy12587 193 EDIVFLSINRYERKKNLEL-A---IYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKL----KLSD 264 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~-l---l~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~----~l~~ 264 (390)
+.+..+++-|+..+|...+ + ++.+.++++. |+.......+++.|...+...........+...++.. .+.+
T Consensus 529 ~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~ 607 (797)
T cd04300 529 DSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKEN-PNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGD 607 (797)
T ss_pred CccEEEEeeechhhhhhhhHHHhhHHHHHHHHhC-CCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCC
Confidence 6678899999999999888 4 4445566554 2111123789999987776444444444555554421 1233
Q ss_pred --cEEEecCCChHHHHHHHHhcceEEeCCC--CCCCCccHHhhhhcCCCEEEecCCCcccceec--CcceeeecCCHHHH
Q psy12587 265 --NVLFLTSPSDAAKISLFKFCHCIIYTPS--NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD--GRTGFLCESNEEAF 338 (390)
Q Consensus 265 --~v~~~g~~~~~e~~~~~~~adv~v~ps~--~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~--~~~g~~~~~~~~~l 338 (390)
+|.|+....-.-...++..||+-...|. .|..|++=+-+|.-|.+.++|--|...|+.++ ++|++++-.+.+++
T Consensus 608 ~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev 687 (797)
T cd04300 608 KLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEV 687 (797)
T ss_pred ceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHHHH
Confidence 6888776555444689999999988777 69999999999999999999999999998876 77999997666666
Q ss_pred HHH
Q psy12587 339 AKA 341 (390)
Q Consensus 339 ~~~ 341 (390)
.+.
T Consensus 688 ~~~ 690 (797)
T cd04300 688 EAL 690 (797)
T ss_pred HHH
Confidence 544
No 159
>PLN02207 UDP-glycosyltransferase
Probab=97.33 E-value=0.03 Score=51.88 Aligned_cols=193 Identities=13% Similarity=0.069 Sum_probs=98.6
Q ss_pred hcCcceEEEccHhHHHH-HHHHhcc-CCCCceeecCCCCCCC--CCCC---CCccchhhhcCCCCCCCCeEEEEeecccc
Q psy12587 133 TCKADKIVVNSEFTKSV-VQATFRS-LDHKCLDILYPSVYTE--GLEK---TTPEPIENVLNPLPGKEDIVFLSINRYER 205 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~-~~~~~~~-~~~~~~~vi~~~~~~~--~~~~---~~~~~~~~~~~~l~~~~~~~i~~~g~~~~ 205 (390)
.+++|.++++|-...+. ..+.+.. ....++..|.+-.... .... .......+.++.-+ .+..+.+..|+...
T Consensus 209 ~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~-~~sVVyvSfGS~~~ 287 (468)
T PLN02207 209 FTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQP-EASVVFLCFGSMGR 287 (468)
T ss_pred cccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCC-CCcEEEEEeccCcC
Confidence 57799999999777665 3333321 0012344443322111 0000 01123444443112 24577777787642
Q ss_pred --cCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh
Q psy12587 206 --KKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF 283 (390)
Q Consensus 206 --~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ 283 (390)
.+.+..+..++..... ++ +..+....... ....-+.+.+.. .++..+.+++|+.+ +++.
T Consensus 288 ~~~~q~~ela~~l~~~~~--------~f-lW~~r~~~~~~--~~~lp~~f~er~-----~~~g~i~~W~PQ~~---IL~H 348 (468)
T PLN02207 288 LRGPLVKEIAHGLELCQY--------RF-LWSLRTEEVTN--DDLLPEGFLDRV-----SGRGMICGWSPQVE---ILAH 348 (468)
T ss_pred CCHHHHHHHHHHHHHCCC--------cE-EEEEeCCCccc--cccCCHHHHhhc-----CCCeEEEEeCCHHH---Hhcc
Confidence 2234445555554422 13 33333211100 000002222222 35667779999984 6777
Q ss_pred cceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----Ccccceec-Ccceeee---------cC-CHHHHHHHHHHHhc
Q psy12587 284 CHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESVVD-GRTGFLC---------ES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 284 adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~~-~~~g~~~---------~~-~~~~l~~~i~~l~~ 347 (390)
..+..+-++ +.-++++||+++|+|+|+.+.. ....++.+ -+.|+-+ .. +.+++.++|.+++.
T Consensus 349 ~~vg~FvTH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 349 KAVGGFVSH--CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cccceeeec--CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 666333232 2345899999999999996642 22332222 3345422 13 78999999999996
No 160
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.28 E-value=0.011 Score=51.47 Aligned_cols=191 Identities=15% Similarity=0.071 Sum_probs=105.3
Q ss_pred cCCCEEEEcccccchhHHHhhc---c-cEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 EKPDLVFCDLVSICIPILQAKQ---F-KVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~~---~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
..||+|++.+..+......+++ . ...+++.+|... .+..|.+|++.+.-.
T Consensus 56 ~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-----------------------~~~FDlvi~p~HD~~--- 109 (311)
T PF06258_consen 56 PWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-----------------------PRPFDLVIVPEHDRL--- 109 (311)
T ss_pred CCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-----------------------ccccCEEEECcccCc---
Confidence 6799999998665554444433 2 244445544221 235699999876411
Q ss_pred HHHhccCCCCceee---cCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccC--CHH---HHHHHHHHHHhh
Q psy12587 151 QATFRSLDHKCLDI---LYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKK--NLE---LAIYSLNSLRSR 222 (390)
Q Consensus 151 ~~~~~~~~~~~~~v---i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K--~~~---~ll~a~~~l~~~ 222 (390)
....++.. .+|.++.+...... ......+. ....+.+.+.+|.-+..- +.+ .+++.+..+.+.
T Consensus 110 ------~~~~Nvl~t~ga~~~i~~~~l~~a~-~~~~~~~~--~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~ 180 (311)
T PF06258_consen 110 ------PRGPNVLPTLGAPNRITPERLAEAA-AAWAPRLA--ALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAA 180 (311)
T ss_pred ------CCCCceEecccCCCcCCHHHHHHHH-Hhhhhhhc--cCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHh
Confidence 01223322 23444443332211 11122222 122445556667543322 223 566677777666
Q ss_pred cccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHc-CCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHH
Q psy12587 223 LSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKL-KLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPI 301 (390)
Q Consensus 223 ~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~-~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~ 301 (390)
.. ..+.|..+--.. .+..+...+. +-.+.+.+...-+..-+..+|+.||.++++.. .-.-+.
T Consensus 181 ~~------~~~~vttSRRTp--------~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~D---SvSMvs 243 (311)
T PF06258_consen 181 YG------GSLLVTTSRRTP--------PEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTED---SVSMVS 243 (311)
T ss_pred CC------CeEEEEcCCCCc--------HHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCc---cHHHHH
Confidence 44 678887765433 4444444333 22356644444444446799999999998654 123468
Q ss_pred hhhhcCCCEEEecCCC
Q psy12587 302 EAMFCKRPVIAVNSGG 317 (390)
Q Consensus 302 Ea~a~G~pvi~~~~~~ 317 (390)
||++.|+||..-+..+
T Consensus 244 EA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 244 EAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHHcCCCEEEecCCC
Confidence 9999999999987655
No 161
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.22 E-value=0.043 Score=47.51 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceE
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCI 287 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~ 287 (390)
..+.+.+.++.+.++ + ++++++|+.+.. +..++..+..+-...+.+.|..+-.|+..+++.||++
T Consensus 138 ~~~~~~~l~~~l~~~--~-----~~ivl~g~~~e~--------~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~ 202 (279)
T cd03789 138 PAERFAALADRLLAR--G-----ARVVLTGGPAER--------ELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLV 202 (279)
T ss_pred CHHHHHHHHHHHHHC--C-----CEEEEEechhhH--------HHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEE
Confidence 346777777777765 2 778888865542 3444444443222445667888889999999999999
Q ss_pred EeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 288 IYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 288 v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
|.+. .|..-+ |.++|+|+|+--
T Consensus 203 I~~D----sg~~Hl-A~a~~~p~i~l~ 224 (279)
T cd03789 203 VTND----SGPMHL-AAALGTPTVALF 224 (279)
T ss_pred EeeC----CHHHHH-HHHcCCCEEEEE
Confidence 9764 244444 579999999943
No 162
>PLN03004 UDP-glycosyltransferase
Probab=97.15 E-value=0.011 Score=54.37 Aligned_cols=82 Identities=9% Similarity=0.026 Sum_probs=59.7
Q ss_pred CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC----CCccccee-cCcceeeec-----C
Q psy12587 264 DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS----GGPKESVV-DGRTGFLCE-----S 333 (390)
Q Consensus 264 ~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~----~~~~e~i~-~~~~g~~~~-----~ 333 (390)
.++.+.+++|+. ++++.+++..+-++ +.-++++||+++|+|+|+.+. ......+. .-+.|+.++ .
T Consensus 334 ~g~~v~~W~PQ~---~iL~H~~v~~FvTH--~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 408 (451)
T PLN03004 334 KGMVVKSWAPQV---PVLNHKAVGGFVTH--CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGF 408 (451)
T ss_pred CcEEEEeeCCHH---HHhCCCccceEecc--CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCc
Confidence 578888999998 58899998443333 334589999999999999664 33344443 335676663 3
Q ss_pred -CHHHHHHHHHHHhcCCh
Q psy12587 334 -NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 334 -~~~~l~~~i~~l~~~~~ 350 (390)
+.+++++++.++++++.
T Consensus 409 ~~~e~l~~av~~vm~~~~ 426 (451)
T PLN03004 409 VSSTEVEKRVQEIIGECP 426 (451)
T ss_pred cCHHHHHHHHHHHhcCHH
Confidence 78999999999998754
No 163
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.13 E-value=0.021 Score=53.39 Aligned_cols=80 Identities=9% Similarity=0.008 Sum_probs=53.3
Q ss_pred CcEEEecCCChHHHHHHHHhcce--EEeCCCCCCCCccHHhhhhcCCCEEEecCC----Cccc-ceecCcceeeec----
Q psy12587 264 DNVLFLTSPSDAAKISLFKFCHC--IIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKE-SVVDGRTGFLCE---- 332 (390)
Q Consensus 264 ~~v~~~g~~~~~e~~~~~~~adv--~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e-~i~~~~~g~~~~---- 332 (390)
++..+.+++++. .+++...+ ||. -+.-++++||+++|+|+|+.+.. .... .++.-+.|+.+.
T Consensus 340 ~rg~v~~w~PQ~---~iL~h~~vg~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~ 412 (475)
T PLN02167 340 GRGLVCGWAPQV---EILAHKAIGGFVS----HCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYV 412 (475)
T ss_pred cCeeeeccCCHH---HHhcCcccCeEEe----eCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccc
Confidence 345667999887 47777554 552 22345899999999999996642 2222 233334565542
Q ss_pred -----C-CHHHHHHHHHHHhcCCh
Q psy12587 333 -----S-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 333 -----~-~~~~l~~~i~~l~~~~~ 350 (390)
. +.+++++++.+++.+++
T Consensus 413 ~~~~~~~~~~~l~~av~~~m~~~~ 436 (475)
T PLN02167 413 SAYGEIVKADEIAGAVRSLMDGED 436 (475)
T ss_pred cccCCcccHHHHHHHHHHHhcCCH
Confidence 3 78999999999997653
No 164
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.06 E-value=0.05 Score=50.75 Aligned_cols=77 Identities=8% Similarity=0.059 Sum_probs=52.0
Q ss_pred CcEEEecCCChHHHHHHHHhc--ceEEeCCCCCCCCccHHhhhhcCCCEEEecC----CCccccee-cCcceeee-----
Q psy12587 264 DNVLFLTSPSDAAKISLFKFC--HCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS----GGPKESVV-DGRTGFLC----- 331 (390)
Q Consensus 264 ~~v~~~g~~~~~e~~~~~~~a--dv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~----~~~~e~i~-~~~~g~~~----- 331 (390)
.++.+.+++++. .++... ++||. .+.-++++||+++|+|+|+.+. ......+. .-+.|+.+
T Consensus 343 ~g~~v~~w~PQ~---~vL~h~~v~~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~ 415 (477)
T PLN02863 343 RGLVIRGWAPQV---AILSHRAVGAFLT----HCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGAD 415 (477)
T ss_pred CCEEecCCCCHH---HHhcCCCcCeEEe----cCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCC
Confidence 568888999987 477764 45552 2344589999999999999654 22333332 22456555
Q ss_pred cC-CHHHHHHHHHHHhc
Q psy12587 332 ES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 332 ~~-~~~~l~~~i~~l~~ 347 (390)
.. +.+++.+++.+++.
T Consensus 416 ~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 416 TVPDSDELARVFMESVS 432 (477)
T ss_pred CCcCHHHHHHHHHHHhh
Confidence 12 67899999999884
No 165
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.06 E-value=0.012 Score=54.61 Aligned_cols=81 Identities=7% Similarity=-0.014 Sum_probs=56.8
Q ss_pred CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----Ccccce-ecCcceeeec----C-
Q psy12587 264 DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESV-VDGRTGFLCE----S- 333 (390)
Q Consensus 264 ~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i-~~~~~g~~~~----~- 333 (390)
.++.+.+++++. ++++...+..+-+. +.-++++||+.+|+|+|+.+.. .....+ +.-+.|..++ .
T Consensus 338 rg~vv~~W~PQ~---~iL~h~~vg~FitH--~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~ 412 (481)
T PLN02992 338 RGFVVPSWAPQA---EILAHQAVGGFLTH--CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVI 412 (481)
T ss_pred CCEEEeecCCHH---HHhCCcccCeeEec--CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcc
Confidence 468888999987 47888776333232 3446899999999999997652 233343 2334566652 3
Q ss_pred CHHHHHHHHHHHhcCC
Q psy12587 334 NEEAFAKAMKKIVDND 349 (390)
Q Consensus 334 ~~~~l~~~i~~l~~~~ 349 (390)
+.++++++|.+++.++
T Consensus 413 ~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 413 SRSKIEALVRKVMVEE 428 (481)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 7899999999999764
No 166
>PLN00164 glucosyltransferase; Provisional
Probab=97.05 E-value=0.036 Score=51.79 Aligned_cols=92 Identities=5% Similarity=-0.005 Sum_probs=59.2
Q ss_pred cEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC----CCcccce-ecCcceeeec-------
Q psy12587 265 NVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS----GGPKESV-VDGRTGFLCE------- 332 (390)
Q Consensus 265 ~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~----~~~~e~i-~~~~~g~~~~------- 332 (390)
.+.+.+++++. .+++.+++..+-++ +.-++++||+++|+|+|+.+. ......+ +.-+.|+.+.
T Consensus 340 g~~v~~w~PQ~---~iL~h~~vg~fvtH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~ 414 (480)
T PLN00164 340 GLVWPTWAPQK---EILAHAAVGGFVTH--CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDN 414 (480)
T ss_pred CeEEeecCCHH---HHhcCcccCeEEee--cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCC
Confidence 46677999988 57888885333332 234589999999999999664 2223333 3334566552
Q ss_pred C-CHHHHHHHHHHHhcCChhHHHHHHHHHH
Q psy12587 333 S-NEEAFAKAMKKIVDNDGNIIQQFSQFGF 361 (390)
Q Consensus 333 ~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~ 361 (390)
. +.++++++|.+++.++.++.+.+++++.
T Consensus 415 ~~~~e~l~~av~~vm~~~~~~~~~~r~~a~ 444 (480)
T PLN00164 415 FVEAAELERAVRSLMGGGEEEGRKAREKAA 444 (480)
T ss_pred cCcHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 2 6799999999999765311334444443
No 167
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=97.03 E-value=0.0043 Score=59.90 Aligned_cols=148 Identities=13% Similarity=0.104 Sum_probs=105.3
Q ss_pred CCeEEEEeecccccCCHHH-HHH---HHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHc----CCCC
Q psy12587 193 EDIVFLSINRYERKKNLEL-AIY---SLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKL----KLSD 264 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~-ll~---a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~----~l~~ 264 (390)
+.+..+++-|+..+|...+ ++. .+.++++. |+.......+++.|...+.........+.+...++.. .+.+
T Consensus 526 ~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~ 604 (794)
T TIGR02093 526 NSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKED-PPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGD 604 (794)
T ss_pred cccchhhheechhhhHHHHHHhhhHHHHHHHHhC-CCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCC
Confidence 5677789999999998888 544 45555543 2211123689999987776444444444444444321 1334
Q ss_pred --cEEEecCCChHHHHHHHHhcceEEeCCC--CCCCCccHHhhhhcCCCEEEecCCCcccceec--CcceeeecCCHHHH
Q psy12587 265 --NVLFLTSPSDAAKISLFKFCHCIIYTPS--NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD--GRTGFLCESNEEAF 338 (390)
Q Consensus 265 --~v~~~g~~~~~e~~~~~~~adv~v~ps~--~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~--~~~g~~~~~~~~~l 338 (390)
+|.|+....-.-...++..||+....|. .|..|++=+-+|.-|.+.++|--|...|+.++ ++|++++-.+.+++
T Consensus 605 ~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev 684 (794)
T TIGR02093 605 KLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEV 684 (794)
T ss_pred ceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHHHH
Confidence 6888776555544689999999988777 69999999999999999999999999998876 77899987676766
Q ss_pred HHH
Q psy12587 339 AKA 341 (390)
Q Consensus 339 ~~~ 341 (390)
.+.
T Consensus 685 ~~~ 687 (794)
T TIGR02093 685 EAL 687 (794)
T ss_pred HHH
Confidence 654
No 168
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=97.02 E-value=0.0034 Score=60.52 Aligned_cols=148 Identities=13% Similarity=0.111 Sum_probs=105.8
Q ss_pred CCeEEEEeecccccCCHHH-HHHH---HHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcC----CCC
Q psy12587 193 EDIVFLSINRYERKKNLEL-AIYS---LNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLK----LSD 264 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~-ll~a---~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~----l~~ 264 (390)
+.+.++++-|+..+|...+ ++.. +.++++. |+.......+++.|...+.........+.+...++..+ +.+
T Consensus 528 ~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~ 606 (798)
T PRK14985 528 QAIFDVQIKRLHEYKRQHLNLLHILALYKEIREN-PQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGD 606 (798)
T ss_pred hhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhC-CCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhCC
Confidence 5677788999999998887 5544 4455543 21111237899999887765444444444444443331 223
Q ss_pred --cEEEecCCChHHHHHHHHhcceEEeCCC--CCCCCccHHhhhhcCCCEEEecCCCcccceec--CcceeeecCCHHHH
Q psy12587 265 --NVLFLTSPSDAAKISLFKFCHCIIYTPS--NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD--GRTGFLCESNEEAF 338 (390)
Q Consensus 265 --~v~~~g~~~~~e~~~~~~~adv~v~ps~--~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~--~~~g~~~~~~~~~l 338 (390)
+|.|+....-.-...++..||+....|. .|..|++=+-+|.-|.+.+++--|...|+.++ ++||+++-.+.+++
T Consensus 607 ~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~ev 686 (798)
T PRK14985 607 KLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQV 686 (798)
T ss_pred ceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHHHH
Confidence 6888877555555689999999998777 69999999999999999999999998888875 77999997666665
Q ss_pred HHH
Q psy12587 339 AKA 341 (390)
Q Consensus 339 ~~~ 341 (390)
.+.
T Consensus 687 ~~~ 689 (798)
T PRK14985 687 KAL 689 (798)
T ss_pred HHH
Confidence 554
No 169
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.00 E-value=0.03 Score=51.59 Aligned_cols=93 Identities=11% Similarity=0.105 Sum_probs=61.7
Q ss_pred CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC----CCcccceecC-cceeeec-----
Q psy12587 263 SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS----GGPKESVVDG-RTGFLCE----- 332 (390)
Q Consensus 263 ~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~----~~~~e~i~~~-~~g~~~~----- 332 (390)
.+++.+.+++|+. ++++...+..+-++ +..++++||+++|+|+|+.+. ......+.+. +.|+-+.
T Consensus 316 ~~~~~i~~W~PQ~---~iL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~ 390 (449)
T PLN02173 316 KDKSLVLKWSPQL---QVLSNKAIGCFMTH--CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKES 390 (449)
T ss_pred CCceEEeCCCCHH---HHhCCCccceEEec--CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccC
Confidence 3678888999987 57888775444343 345799999999999999664 2233344332 3454442
Q ss_pred -C-CHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q psy12587 333 -S-NEEAFAKAMKKIVDNDGNIIQQFSQFGFN 362 (390)
Q Consensus 333 -~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 362 (390)
. +.+++++++.+++.+++ .+++++++++
T Consensus 391 ~~~~~e~v~~av~~vm~~~~--~~~~r~~a~~ 420 (449)
T PLN02173 391 GIAKREEIEFSIKEVMEGEK--SKEMKENAGK 420 (449)
T ss_pred CcccHHHHHHHHHHHhcCCh--HHHHHHHHHH
Confidence 1 67999999999997753 3444444433
No 170
>PLN02554 UDP-glycosyltransferase family protein
Probab=96.97 E-value=0.04 Score=51.63 Aligned_cols=79 Identities=9% Similarity=-0.025 Sum_probs=52.6
Q ss_pred CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----Ccc-cceecCcceeeec------
Q psy12587 264 DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPK-ESVVDGRTGFLCE------ 332 (390)
Q Consensus 264 ~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~-e~i~~~~~g~~~~------ 332 (390)
+++.+.+++|+. ++++...+..+-+ .+.-++++||+.+|+|+|+.+.. ... ..++.-+.|..+.
T Consensus 342 ~~g~v~~W~PQ~---~iL~H~~v~~Fvt--H~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~ 416 (481)
T PLN02554 342 DIGKVIGWAPQV---AVLAKPAIGGFVT--HCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGD 416 (481)
T ss_pred cCceEEeeCCHH---HHhCCcccCcccc--cCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecccccc
Confidence 567778999987 4775444432222 23346899999999999997642 222 2233334555542
Q ss_pred -------C-CHHHHHHHHHHHhc
Q psy12587 333 -------S-NEEAFAKAMKKIVD 347 (390)
Q Consensus 333 -------~-~~~~l~~~i~~l~~ 347 (390)
. +.+++.++|.+++.
T Consensus 417 ~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 417 LLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred ccccccCeEcHHHHHHHHHHHhc
Confidence 3 88999999999996
No 171
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=96.96 E-value=0.023 Score=52.51 Aligned_cols=83 Identities=8% Similarity=0.124 Sum_probs=55.8
Q ss_pred CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC----CCcccceecC-cceeeec-----
Q psy12587 263 SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS----GGPKESVVDG-RTGFLCE----- 332 (390)
Q Consensus 263 ~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~----~~~~e~i~~~-~~g~~~~----- 332 (390)
.++..+.+++|+. ++++..++..+-++ +..++++||+.+|+|+|+.+. ......+.+. +.|+-+.
T Consensus 326 ~~~g~v~~W~PQ~---~iL~h~~vg~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 326 EEVGMIVSWCSQI---EVLRHRAVGCFVTH--CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred cCCeEEEeeCCHH---HHhCCcccceEEee--CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCC
Confidence 4667778999987 57888886444333 345689999999999999664 2222333221 1333331
Q ss_pred C-CHHHHHHHHHHHhcCCh
Q psy12587 333 S-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 333 ~-~~~~l~~~i~~l~~~~~ 350 (390)
. +.+++++++.++++++.
T Consensus 401 ~~~~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 401 LVERGEIRRCLEAVMEEKS 419 (455)
T ss_pred cCcHHHHHHHHHHHHhhhH
Confidence 3 78999999999997543
No 172
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=96.94 E-value=0.025 Score=52.21 Aligned_cols=152 Identities=14% Similarity=0.066 Sum_probs=102.2
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
.+..++|--...-+++-+..++++.+..+ ++-.|.+.... ...+++.|.-+|.+
T Consensus 277 ~~~AlVyGK~~~~w~~k~~~l~~l~~~~e---------ih~tV~~~~~~-----------------~~~~P~~V~NHG~l 330 (559)
T PF15024_consen 277 KNQALVYGKERYMWKGKEKYLDVLHKYME---------IHGTVYDEPQR-----------------PPNVPSFVKNHGIL 330 (559)
T ss_pred cceeEEEccchhhhcCcHHHHHHHHhhcE---------EEEEeccCCCC-----------------CcccchhhhhcCcC
Confidence 33444554444457788888888866432 66666554321 12235567778999
Q ss_pred ChHHHHHHHHhcceEEeCCC-CCCCCccHHhhhhcCCCEEEecCCCc---------------cc----------ceecCc
Q psy12587 273 SDAAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGP---------------KE----------SVVDGR 326 (390)
Q Consensus 273 ~~~e~~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~~~~~~~---------------~e----------~i~~~~ 326 (390)
+..|+..+++.+.++|-... +| |=+.+||+|.|+|.|-...... ++ ++. .-
T Consensus 331 ~~~ef~~lL~~akvfiGlGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG-~P 407 (559)
T PF15024_consen 331 SGDEFQQLLRKAKVFIGLGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIG-EP 407 (559)
T ss_pred CHHHHHHHHHhhhEeeecCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCC-CC
Confidence 99999999999999996443 23 4478999999999988654211 11 111 11
Q ss_pred ceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 327 TGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 327 ~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
..+.|+. |.+++.++|+++++++. ..++--.|+.+.+.+++..+++.
T Consensus 408 hVytVd~~n~~~v~~Avk~il~~~v----------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 408 HVYTVDINNSTEVEAAVKAILATPV----------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhcCC----------CCcCCcccCHHHHHHHHHHHHHh
Confidence 3456777 99999999999998765 12333578899999998887764
No 173
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=96.92 E-value=0.21 Score=43.57 Aligned_cols=267 Identities=9% Similarity=0.084 Sum_probs=153.9
Q ss_pred cCCCEEEEccccc---chhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHH---H
Q psy12587 75 EKPDLVFCDLVSI---CIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTK---S 148 (390)
Q Consensus 75 ~~~Dvi~~~~~~~---~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~---~ 148 (390)
.+.||++=-+... .....+..+.|+|.+..+.+.........+.+....+ ..-...|.|.+.-+... .
T Consensus 72 ~~lDVlIEmg~ql~~~~~~~~~~~G~KvV~y~~GndYv~~~E~~lF~k~~~~~------f~~~~yD~VW~lPq~~~~~~~ 145 (364)
T PF10933_consen 72 DELDVLIEMGAQLDPEWLDYMRARGGKVVSYRCGNDYVMDIESMLFNKPSGHL------FNGAPYDEVWTLPQFENTCAP 145 (364)
T ss_pred ccCCEEEEccCccCHHHHHHHHHcCCeEEEEeCCchHHHHhhHHhcCCCCCcc------CCCCCCceeEeccchhhhchH
Confidence 6889998766322 2334455569999999987654433322222221111 11346788887665333 2
Q ss_pred HHHHHhccCCCCceeecCCCCCCCCCCCCCccc--hhhhcCCCCCCCCeEE-EEeecccccCCHHHHHHHHHHHHhhccc
Q psy12587 149 VVQATFRSLDHKCLDILYPSVYTEGLEKTTPEP--IENVLNPLPGKEDIVF-LSINRYERKKNLELAIYSLNSLRSRLSD 225 (390)
Q Consensus 149 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~i-~~~g~~~~~K~~~~ll~a~~~l~~~~~~ 225 (390)
.+.-.+ ..+++++|.-.++-+++...... ....+|=-|...+.++ +|=-+++--|.--.=+-++.+.-+..|+
T Consensus 146 yl~~l~----r~Pv~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~~PmLi~E~aYR~~P~ 221 (364)
T PF10933_consen 146 YLETLH----RCPVRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVVKTCFIPMLICEEAYRADPD 221 (364)
T ss_pred HHHHHh----cCCceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEEeecCccHHHHHHHHHhChh
Confidence 333332 46889999887776655422110 0011110021222222 2333334445444434445555555554
Q ss_pred ccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCC--CCcEEEecCCChHHHHHHHH-hcceEEeCCCCCCCCccHHh
Q psy12587 226 EMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKL--SDNVLFLTSPSDAAKISLFK-FCHCIIYTPSNEHFGIVPIE 302 (390)
Q Consensus 226 ~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l--~~~v~~~g~~~~~e~~~~~~-~adv~v~ps~~e~~~~~~~E 302 (390)
.+..+.+...... .++ +.+...+..+.+ .....|.|..+-.+ +|+ ..|++|.--...+....-+|
T Consensus 222 ----~v~~~~V~Nt~~~-ke~----~~F~~f~~~ldlvr~gkasfegR~~~p~---fla~~tD~VvSHqWeN~lNYlY~d 289 (364)
T PF10933_consen 222 ----AVEHVYVTNTYHL-KEH----PTFVNFANSLDLVRDGKASFEGRFDFPD---FLAQHTDAVVSHQWENPLNYLYYD 289 (364)
T ss_pred ----hcceEEEecchhh-hcC----HHHHHHHHhhHHhhcCeeEEeeecChHH---HHHhCCCEEEeccccchhhHHHHH
Confidence 3554444433221 111 555566665544 45678888876664 444 47888854433456667899
Q ss_pred hhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHH
Q psy12587 303 AMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQ 371 (390)
Q Consensus 303 a~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (390)
|+.-|=|.|-.. .++.+ .|+.++. |..+=++++.+++.+-+...+..++++++.+ ..+++.
T Consensus 290 aLyggYPLVHNS-----~~l~d--~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l-~~~~p~ 351 (364)
T PF10933_consen 290 ALYGGYPLVHNS-----PLLKD--VGYYYPDFDAFEGARQLLRAIREHDADLDAYRARARRLL-DRLSPE 351 (364)
T ss_pred HHhcCCCcccCc-----chhcc--cCcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHH-HhhCCC
Confidence 999999999743 45533 8999999 9999999999988765547888888888877 566544
No 174
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=96.82 E-value=0.33 Score=43.17 Aligned_cols=245 Identities=11% Similarity=0.109 Sum_probs=125.8
Q ss_pred cCCCEEEEcccc---------cc------hhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceE
Q psy12587 75 EKPDLVFCDLVS---------IC------IPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKI 139 (390)
Q Consensus 75 ~~~Dvi~~~~~~---------~~------~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 139 (390)
.+.|++++.+.. +. +.++++.++|+++.-|+..+. .+...+++....++.++.+
T Consensus 88 ~~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~svGP~-----------~~~~s~~~~~~~~~~~s~i 156 (385)
T COG2327 88 GKADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQSVGPL-----------KHPLSRQLLNYVLGGCSAI 156 (385)
T ss_pred hhCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCCEEEEeccCCCc-----------cCHHHHHHHHHHhcCCcEE
Confidence 789999875521 11 233455669999998875432 2333456677888999999
Q ss_pred EEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHH-----HHHH
Q psy12587 140 VVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLE-----LAIY 214 (390)
Q Consensus 140 i~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~-----~ll~ 214 (390)
++=-+...+.++.. +. +..... |+.+.-+.+......... ....+.+.+....+.+...-+ .+-+
T Consensus 157 ~vRD~~S~~llk~~--gi---~a~l~~---D~Af~L~~~~~~~~~~~~--~~~~~~~~i~lr~~~~~~t~~~~~~~~v~~ 226 (385)
T COG2327 157 SVRDPVSYELLKQL--GI---NARLVT---DPAFLLPASSQNATASDV--EAREKTVAITLRGLHPDNTAQRSILKYVNE 226 (385)
T ss_pred EEecHHhHHHHHHc--CC---CeEeec---Ccceeccccccccccccc--ccccceEEEEecccCCchhhhHHHHHHHHH
Confidence 99888888888854 22 333333 333222111111111000 111233333333333322111 2223
Q ss_pred HHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCC
Q psy12587 215 SLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNE 294 (390)
Q Consensus 215 a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e 294 (390)
++..+....+. +.++...-.+... + ..-.+..+....-.+++.+......+++...++++|++|-.-.
T Consensus 227 ~l~~~~~~~~~----~~~i~~~~~~~s~---d---~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-- 294 (385)
T COG2327 227 ALDLVERQVKA----LWRITLIDYGASD---D---LAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRL-- 294 (385)
T ss_pred HHHHHHHhhhc----ceEEEeeeccccc---h---hHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehh--
Confidence 33332111111 2333332222221 0 1334444444433466766543335677789999999885321
Q ss_pred CCCccHHhhhhcCCCEEEecCC-Ccccceec-Ccceeee--cC-CHHHHHHHHHHHhcCChhHHHH
Q psy12587 295 HFGIVPIEAMFCKRPVIAVNSG-GPKESVVD-GRTGFLC--ES-NEEAFAKAMKKIVDNDGNIIQQ 355 (390)
Q Consensus 295 ~~~~~~~Ea~a~G~pvi~~~~~-~~~e~i~~-~~~g~~~--~~-~~~~l~~~i~~l~~~~~~~~~~ 355 (390)
-+++=|++.|+|+|+-... -...+.++ +..++.. .+ +.+.+.+...+.+.+.++.+++
T Consensus 295 ---HsaI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 295 ---HSAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred ---HHHHHHHhcCCCeEEEeecHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhccHHHHhh
Confidence 2455599999999996542 12222222 2233333 34 8888998888887766623333
No 175
>PLN03015 UDP-glucosyl transferase
Probab=96.81 E-value=0.097 Score=48.51 Aligned_cols=77 Identities=10% Similarity=-0.004 Sum_probs=51.2
Q ss_pred EEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----Ccccce-ecCcceeeec------C-
Q psy12587 266 VLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESV-VDGRTGFLCE------S- 333 (390)
Q Consensus 266 v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i-~~~~~g~~~~------~- 333 (390)
+.+.+++++.+ +++...+..+-++ +.-++++||+++|+|+|+.+.. .....+ +.-..|+-+. .
T Consensus 337 l~v~~W~PQ~~---vL~h~~vg~fvtH--~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQVE---ILSHRSIGGFLSH--CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCHHH---HhccCccCeEEec--CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 56779999885 6666665433332 2345899999999999997642 122222 2223454442 3
Q ss_pred CHHHHHHHHHHHhc
Q psy12587 334 NEEAFAKAMKKIVD 347 (390)
Q Consensus 334 ~~~~l~~~i~~l~~ 347 (390)
+.++++++|++++.
T Consensus 412 ~~e~i~~~v~~lm~ 425 (470)
T PLN03015 412 GREEVASLVRKIVA 425 (470)
T ss_pred CHHHHHHHHHHHHc
Confidence 78999999999995
No 176
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=96.80 E-value=0.015 Score=46.04 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=51.1
Q ss_pred HHHhh-cCCCEEEEcccccchh-HHHh--hc----ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEE
Q psy12587 70 VAWYS-EKPDLVFCDLVSICIP-ILQA--KQ----FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVV 141 (390)
Q Consensus 70 ~~~~~-~~~Dvi~~~~~~~~~~-~~~~--~~----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 141 (390)
..+++ .+||+|++..+..... +..+ .+ +|++..+-+..... . .|+-..+|..++
T Consensus 82 ~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H---~---------------~W~~~~~D~y~V 143 (169)
T PF06925_consen 82 IRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVH---P---------------FWIHPGVDRYFV 143 (169)
T ss_pred HHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCC---c---------------CeecCCCCEEEE
Confidence 35666 9999999998753333 3322 22 55443333321100 0 233457899999
Q ss_pred ccHhHHHHHHHHhccCCCCceeecCCCC
Q psy12587 142 NSEFTKSVVQATFRSLDHKCLDILYPSV 169 (390)
Q Consensus 142 ~s~~~~~~~~~~~~~~~~~~~~vi~~~~ 169 (390)
.|+.+++.+.+. |++++++.+..-+|
T Consensus 144 ase~~~~~l~~~--Gi~~~~I~vtGiPV 169 (169)
T PF06925_consen 144 ASEEVKEELIER--GIPPERIHVTGIPV 169 (169)
T ss_pred CCHHHHHHHHHc--CCChhHEEEeCccC
Confidence 999999999985 67788888876543
No 177
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=96.74 E-value=0.31 Score=42.66 Aligned_cols=178 Identities=15% Similarity=0.085 Sum_probs=95.3
Q ss_pred hhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCC
Q psy12587 94 AKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEG 173 (390)
Q Consensus 94 ~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 173 (390)
..++|+++.-.+..+... ...+++.+.+++.+|.+.+=.+...+.+++. + . ++.+.|-++ .
T Consensus 97 ~~~k~~~~~g~giGP~~~-----------~~~r~~~~~~l~~~~~i~vRD~~S~~~l~~~-g-~---~i~~~~D~a---~ 157 (298)
T TIGR03609 97 LFGKPVILWGQGIGPLRR-----------RLSRWLVRRVLRGCRAISVRDAASYRLLKRL-G-I---PAELAADPV---W 157 (298)
T ss_pred HcCCCEEEEecccCCcCC-----------HHHHHHHHHHHccCCEEEEeCHHHHHHHHHh-C-C---CceEeCChh---h
Confidence 344888887776433211 1223556777899999998777777777654 2 2 455555432 1
Q ss_pred CCCCCccchhhhcCCCCCCCCeEEEEeeccc--ccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHH
Q psy12587 174 LEKTTPEPIENVLNPLPGKEDIVFLSINRYE--RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYK 251 (390)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~ 251 (390)
.-+... ..... ..+.+.+.+.+..+. .....+.+.+++..+.++.. .+++++...... +. +
T Consensus 158 ~l~~~~--~~~~~---~~~~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g------~~v~~i~~~~~~---D~---~ 220 (298)
T TIGR03609 158 LLPPEP--WPGGE---PLPEPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTG------AFVLFLPFQQPQ---DL---P 220 (298)
T ss_pred hCCCCc--ccccc---cCCCCeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhC------CeEEEEeCCcch---hH---H
Confidence 111100 00000 112333433333221 11234567777777766532 455454432211 11 2
Q ss_pred HHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 252 ELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 252 ~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
..+++.+.+.-+..+ ....+..|+..++++||++|.... -.++=|+.+|+|+|+-.
T Consensus 221 ~~~~l~~~~~~~~~i--~~~~~~~e~~~~i~~~~~vI~~Rl-----H~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 221 LARALRDQLLGPAEV--LSPLDPEELLGLFASARLVIGMRL-----HALILAAAAGVPFVALS 276 (298)
T ss_pred HHHHHHHhcCCCcEE--EecCCHHHHHHHHhhCCEEEEech-----HHHHHHHHcCCCEEEee
Confidence 333333333322333 356677899999999998885442 24556999999999854
No 178
>PLN02555 limonoid glucosyltransferase
Probab=96.71 E-value=0.12 Score=48.25 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=58.9
Q ss_pred CCcEEEecCCChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----CcccceecC-cceeee----
Q psy12587 263 SDNVLFLTSPSDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESVVDG-RTGFLC---- 331 (390)
Q Consensus 263 ~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~~~-~~g~~~---- 331 (390)
.+++.+.+++|+.+ +++. +.+||. .+.-++++||+.+|+|+|+.+.- ....++.+. +.|+.+
T Consensus 336 ~~~g~v~~W~PQ~~---iL~H~~v~~Fvt----H~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~ 408 (480)
T PLN02555 336 GDKGKIVQWCPQEK---VLAHPSVACFVT----HCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGE 408 (480)
T ss_pred CCceEEEecCCHHH---HhCCCccCeEEe----cCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCc
Confidence 46778889999874 6644 444552 23356899999999999997642 223333332 456555
Q ss_pred --c-C-CHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q psy12587 332 --E-S-NEEAFAKAMKKIVDNDGNIIQQFSQFGFN 362 (390)
Q Consensus 332 --~-~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 362 (390)
. . +.+++.+++.+++.+++ -+++++++++
T Consensus 409 ~~~~~v~~~~v~~~v~~vm~~~~--g~~~r~ra~~ 441 (480)
T PLN02555 409 AENKLITREEVAECLLEATVGEK--AAELKQNALK 441 (480)
T ss_pred cccCcCcHHHHHHHHHHHhcCch--HHHHHHHHHH
Confidence 1 2 68999999999997643 3444444443
No 179
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.49 E-value=0.066 Score=47.34 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=78.3
Q ss_pred CCeEEEEeecccccCCH--HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 193 EDIVFLSINRYERKKNL--ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~--~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
++.+++..|.-.+.|.+ +.+.+.+..+.++ +..+++.|+++.+ .+..++..+..+ +..+.|
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~-------~~~~vl~~g~~~e-------~~~~~~i~~~~~---~~~l~g 241 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLAR-------GLQIVLPWGNDAE-------KQRAERIAEALP---GAVVLP 241 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHC-------CCeEEEeCCCHHH-------HHHHHHHHhhCC---CCeecC
Confidence 56777777765666765 4677777777654 2677777544321 022334433332 235678
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccce-ecCcc-ee----eecC-CHHHHHHHHH
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESV-VDGRT-GF----LCES-NEEAFAKAMK 343 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i-~~~~~-g~----~~~~-~~~~l~~~i~ 343 (390)
..+=.|+..+++.||++|..-. |..=+ |.|+|+|+|+--.+..+... .-+.+ .. .... +++++.+++.
T Consensus 242 ~~sL~el~ali~~a~l~I~~DS----gp~Hl-Aaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~ 316 (319)
T TIGR02193 242 KMSLAEVAALLAGADAVVGVDT----GLTHL-AAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDEVLAALE 316 (319)
T ss_pred CCCHHHHHHHHHcCCEEEeCCC----hHHHH-HHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHHHHHHHH
Confidence 8899999999999999997542 33333 77899999983211111110 00111 01 1334 7888888887
Q ss_pred HHh
Q psy12587 344 KIV 346 (390)
Q Consensus 344 ~l~ 346 (390)
+++
T Consensus 317 ~~~ 319 (319)
T TIGR02193 317 ELL 319 (319)
T ss_pred hhC
Confidence 653
No 180
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=96.41 E-value=0.53 Score=40.38 Aligned_cols=185 Identities=15% Similarity=0.115 Sum_probs=94.1
Q ss_pred cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCC
Q psy12587 96 QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLE 175 (390)
Q Consensus 96 ~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 175 (390)
++|+++.-.+.... .....+...+.++++++.+.+=.+...+.+.+. +.+. ++.++|...= ...
T Consensus 99 ~~pv~~~g~g~gp~-----------~~~~~~~~~~~~l~~~~~i~vRD~~S~~~l~~~--g~~~-~~~~~~D~af--~l~ 162 (286)
T PF04230_consen 99 GKPVIILGQGIGPF-----------RSEEFKKLLRRILSKADYISVRDEYSYELLKKL--GISG-NVKLVPDPAF--LLP 162 (286)
T ss_pred CCCeEEECceECcc-----------CCHHHHHHHHHHHhCCCEEEECCHHHHHHHHHc--CCCC-CcEEEeCchh--hcC
Confidence 38888776654111 111223445667888999888777777755553 3312 7777776541 111
Q ss_pred CCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHH
Q psy12587 176 KTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGV 255 (390)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~ 255 (390)
+......... +......+..........-.+.+.+.+..+.+.... +.+......+... .......
T Consensus 163 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~ 228 (286)
T PF04230_consen 163 PSYPDEDKSK----PKRNYISVSNSPSRNNEEYIEEIAELIQRLLDKGYK-----IVLLPFSPSDDDE-----DDDDFNE 228 (286)
T ss_pred cccccccccc----cccceeeeccccchhhhhHHHHHHHHHHHhhcccce-----eEEEEeeeccchh-----hHHHHHh
Confidence 1111000000 000111111111112233455566677776664332 4444444333220 0011111
Q ss_pred HHH-HcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC
Q psy12587 256 LVK-KLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 256 ~~~-~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~ 315 (390)
... ..............+..|+..++++|+++|.... - ..+=|+++|+|+|+-+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~Rl----H-~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 229 IDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRL----H-GAILALSLGVPVIAISY 284 (286)
T ss_pred hhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCC----H-HHHHHHHcCCCEEEEec
Confidence 110 1122234455667888999999999999996543 2 34559999999998653
No 181
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=96.32 E-value=0.013 Score=53.12 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhh---cCCCEEEEcccccchhHHHhhc---ccEEEEeecCCccccchhhhh----hhhcccch
Q psy12587 56 ALCMYLRMIVIALYVAWYS---EKPDLVFCDLVSICIPILQAKQ---FKVLFYCHYPDQLLSKQGSFL----KSIYRFPL 125 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~---~~~Dvi~~~~~~~~~~~~~~~~---~~~v~~~h~~~~~~~~~~~~~----~~~~~~~~ 125 (390)
.++.|+..+.......+.+ .+||+||.|.....+.+..+++ +|...+-|...-.....+... ..-++...
T Consensus 378 ~lWPyLe~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsLek~Ky~~s~~~w~e~e~~Yhfs~ 457 (550)
T PF00862_consen 378 DLWPYLEEFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSLEKTKYEDSDLYWKEIEEKYHFSC 457 (550)
T ss_dssp G-GGGHHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-HHHHHHTTTTTSHHHHHHH-HHH
T ss_pred hchhhHHHHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhccccccccccCCCHHHHHhhccchh
Confidence 4555555554433332222 7899999999766665554444 999999997532111111100 11111111
Q ss_pred h-hHHHHHhcCcceEEEccHhHHH
Q psy12587 126 N-KLEEWTTCKADKIVVNSEFTKS 148 (390)
Q Consensus 126 ~-~~~~~~~~~ad~ii~~s~~~~~ 148 (390)
+ ..+..+++.||.||+.+.....
T Consensus 458 qftAd~iamn~adfIItST~QEI~ 481 (550)
T PF00862_consen 458 QFTADLIAMNAADFIITSTYQEIA 481 (550)
T ss_dssp HHHHHHHHHHHSSEEEESSHHHHH
T ss_pred hhhHHHHHhhcCCEEEEcchHhhc
Confidence 1 2345678999999998865444
No 182
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.27 E-value=0.041 Score=49.06 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=66.6
Q ss_pred CCCeEEEEeecc-cccCCHH--HHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE
Q psy12587 192 KEDIVFLSINRY-ERKKNLE--LAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF 268 (390)
Q Consensus 192 ~~~~~i~~~g~~-~~~K~~~--~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~ 268 (390)
+.+++++..|.- .+.|.+. ...+.++.+.++ +..+++.|+..+. +..++..+..+ ...+.+
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~-------~~~ivl~G~~~e~--------~~~~~i~~~~~-~~~~~l 236 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ-------GYQVVLFGSAKDH--------PAGNEIEALLP-GELRNL 236 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC-------CCEEEEEEChhhH--------HHHHHHHHhCC-cccccC
Confidence 356777777763 4666554 677777777653 2678888876542 33333333332 123447
Q ss_pred ecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 269 LTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 269 ~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
.|..+=.|+..+++.||++|..-. |..-+ |.|.|+|+|+
T Consensus 237 ~g~~sL~el~ali~~a~l~I~~DS----Gp~Hl-AaA~~~P~i~ 275 (334)
T TIGR02195 237 AGETSLDEAVDLIALAKAVVTNDS----GLMHV-AAALNRPLVA 275 (334)
T ss_pred CCCCCHHHHHHHHHhCCEEEeeCC----HHHHH-HHHcCCCEEE
Confidence 788888999999999999997541 33333 7899999998
No 183
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.97 E-value=0.2 Score=44.31 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=61.6
Q ss_pred CCeEEEEeecccccCCH--HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 193 EDIVFLSINRYERKKNL--ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~--~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
.+++++..|.-...|.+ +...+.+..+.++ +..+++.|+++.+ . +..++..+. .+++.+.|
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~-------~~~ivl~~G~~~e----~---~~~~~i~~~---~~~~~l~g 240 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPS-------GLRIKLPWGAEHE----E---QRAKRLAEG---FPYVEVLP 240 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHC-------CCeEEEeCCCHHH----H---HHHHHHHcc---CCcceecC
Confidence 44554455544455544 3677777777554 2667675333321 0 223333322 23577789
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
..+=.|+..+++.||++|.... |..-+ |.|+|+|+|+
T Consensus 241 ~~sL~elaali~~a~l~I~nDS----Gp~Hl-A~A~g~p~va 277 (322)
T PRK10964 241 KLSLEQVARVLAGAKAVVSVDT----GLSHL-TAALDRPNIT 277 (322)
T ss_pred CCCHHHHHHHHHhCCEEEecCC----cHHHH-HHHhCCCEEE
Confidence 8999999999999999997542 33334 8899999999
No 184
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.87 E-value=0.074 Score=47.77 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=67.6
Q ss_pred CCeEEEEeecccccCCH--HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 193 EDIVFLSINRYERKKNL--ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~--~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
++++++..|.-.+.|.+ +.+.+.++.+.+. +..++++|+.... +. +..++..+...-...+.+.|
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~-------~~~vvl~ggp~e~-----e~-~~~~~i~~~~~~~~~~~l~g 249 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQAR-------GYEVVLTSGPDKD-----DL-ACVNEIAQGCQTPPVTALAG 249 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHC-------CCeEEEEcCCChH-----HH-HHHHHHHHhcCCCccccccC
Confidence 56777888876667765 4677777777553 2678888754321 00 22233333332233466789
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEe
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~ 313 (390)
..+=.|+..+++.||++|..- .|..-+ |.|+|+|+|+-
T Consensus 250 ~~sL~el~ali~~a~l~v~nD----SGp~Hl-AaA~g~P~v~l 287 (352)
T PRK10422 250 KTTFPELGALIDHAQLFIGVD----SAPAHI-AAAVNTPLICL 287 (352)
T ss_pred CCCHHHHHHHHHhCCEEEecC----CHHHHH-HHHcCCCEEEE
Confidence 999999999999999999754 133333 78999999983
No 185
>PLN02534 UDP-glycosyltransferase
Probab=95.72 E-value=0.44 Score=44.66 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=51.6
Q ss_pred CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----ccccee-cCcceeee------
Q psy12587 263 SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVV-DGRTGFLC------ 331 (390)
Q Consensus 263 ~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~-~~~~g~~~------ 331 (390)
..++.+.|++++. .++...++..+-+ .+..++++||+++|+|+|+.+..+ ....+. .-+.|+-+
T Consensus 343 ~~g~~v~~w~pq~---~iL~h~~v~~fvt--H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~ 417 (491)
T PLN02534 343 GRGLLIKGWAPQV---LILSHPAIGGFLT--HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPV 417 (491)
T ss_pred cCCeeccCCCCHH---HHhcCCccceEEe--cCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccc
Confidence 3567788999987 4788888733323 234568999999999999976521 111111 11112211
Q ss_pred --------c-C-CHHHHHHHHHHHhc
Q psy12587 332 --------E-S-NEEAFAKAMKKIVD 347 (390)
Q Consensus 332 --------~-~-~~~~l~~~i~~l~~ 347 (390)
. . +.+++++++++++.
T Consensus 418 ~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 418 RWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred cccccccccCccCHHHHHHHHHHHhc
Confidence 0 2 68899999999996
No 186
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=95.70 E-value=0.046 Score=46.33 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=60.8
Q ss_pred CCCeEEEEeecccccCCHHH--HHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe
Q psy12587 192 KEDIVFLSINRYERKKNLEL--AIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL 269 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~K~~~~--ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~ 269 (390)
+++.+++..|.-.+.|.+.. ..+.+..+.+.+ ..++++|+.... -.+...+..+... .+.+.+.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-------~~vvl~g~~~~~------~~~~~~~~~~~~~-~~~~~~~ 169 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERG-------YRVVLLGGPEEQ------EKEIADQIAAGLQ-NPVINLA 169 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--------EEEE--SSHHH------HHHHHHHHHTTHT-TTTEEET
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-------ceEEEEccchHH------HHHHHHHHHHhcc-cceEeec
Confidence 46778888887777776544 777777776652 567788866420 0022223333221 1367888
Q ss_pred cCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEe
Q psy12587 270 TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 270 g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~ 313 (390)
|..+-.|+..+++.||++|.+-. |..-+ |.|.|+|+|+-
T Consensus 170 ~~~~l~e~~ali~~a~~~I~~Dt----g~~Hl-A~a~~~p~v~l 208 (247)
T PF01075_consen 170 GKTSLRELAALISRADLVIGNDT----GPMHL-AAALGTPTVAL 208 (247)
T ss_dssp TTS-HHHHHHHHHTSSEEEEESS----HHHHH-HHHTT--EEEE
T ss_pred CCCCHHHHHHHHhcCCEEEecCC----hHHHH-HHHHhCCEEEE
Confidence 98999999999999999997642 33334 88999999994
No 187
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.62 E-value=0.14 Score=40.39 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEEEcccccchhH---HHhh------cccEEEEeecCCccccchhhhhhhhcccchh
Q psy12587 56 ALCMYLRMIVIALYVAWYSEKPDLVFCDLVSICIPI---LQAK------QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLN 126 (390)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~---~~~~------~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 126 (390)
.....+..+...+.. +.+.+||+|+++++..++++ +++. +.++|+.--. ... ...+..
T Consensus 73 ~~~~~l~~~~~~~~i-l~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~-aRv--~~lSlT--------- 139 (170)
T PF08660_consen 73 SIFTTLRAFLQSLRI-LRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF-ARV--KTLSLT--------- 139 (170)
T ss_pred hHHHHHHHHHHHHHH-HHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee-eec--CCCchH---------
Confidence 344444444333333 33489999999998776654 3444 4666654321 110 001111
Q ss_pred hHHHHHhcCcceEEEccHhHHHHH
Q psy12587 127 KLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 127 ~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
-+.++..||.+++..+.+++.+
T Consensus 140 --Gklly~~aD~f~VQW~~l~~~y 161 (170)
T PF08660_consen 140 --GKLLYPFADRFIVQWEELAEKY 161 (170)
T ss_pred --HHHHHHhCCEEEEcCHHHHhHC
Confidence 1334556999999998777643
No 188
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.48 E-value=0.16 Score=45.43 Aligned_cols=103 Identities=11% Similarity=0.077 Sum_probs=66.0
Q ss_pred CCeEEEEeecccccCCH--HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 193 EDIVFLSINRYERKKNL--ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~--~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
++.+++..|.-.+.|.+ +...+.++.+.++ +..++++|+.... +. +..++..+..+-+..+.+.|
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~-------~~~ivl~g~p~~~---e~---~~~~~i~~~~~~~~~~~l~g 247 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHAR-------GYEVVLTSGPDKD---EL---AMVNEIAQGCQTPRVTSLAG 247 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhC-------CCeEEEecCCCHH---HH---HHHHHHHhhCCCCcccccCC
Confidence 45666777765566644 5667777777553 2678888864321 00 12333333333223456789
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEe
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~ 313 (390)
..+=.|+..+++.||++|..- .|..=+ |.|.|+|+|+-
T Consensus 248 ~~sL~el~ali~~a~l~Vs~D----SGp~Hl-AaA~g~p~v~L 285 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGVD----SVPMHM-AAALGTPLVAL 285 (344)
T ss_pred CCCHHHHHHHHHhCCEEEecC----CHHHHH-HHHcCCCEEEE
Confidence 889999999999999999753 233333 88999999983
No 189
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.21 E-value=0.16 Score=45.18 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=71.0
Q ss_pred CCeEEEEee-cccccCCHH--HHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe
Q psy12587 193 EDIVFLSIN-RYERKKNLE--LAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL 269 (390)
Q Consensus 193 ~~~~i~~~g-~~~~~K~~~--~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~ 269 (390)
.+.+++..| +....|.+. ...+.+..+.+++ .+++++|+..+. +..+++.+.++ ..+.+.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~-------~~Vvl~g~~~e~--------e~~~~i~~~~~--~~~~l~ 237 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKG-------YQVVLFGGPDEE--------ERAEEIAKGLP--NAVILA 237 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCC-------CEEEEecChHHH--------HHHHHHHHhcC--CccccC
Confidence 367777788 555666654 6777777777763 678888877432 44555555553 223388
Q ss_pred cCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 270 TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 270 g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
|..+-.|+..+++.||++|.+. .|..-+ |.|.|+|+|+--
T Consensus 238 ~k~sL~e~~~li~~a~l~I~~D----Sg~~Hl-AaA~~~P~I~iy 277 (334)
T COG0859 238 GKTSLEELAALIAGADLVIGND----SGPMHL-AAALGTPTIALY 277 (334)
T ss_pred CCCCHHHHHHHHhcCCEEEccC----ChHHHH-HHHcCCCEEEEE
Confidence 9999999999999999999765 244445 889999999944
No 190
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=95.14 E-value=2 Score=39.01 Aligned_cols=221 Identities=13% Similarity=0.101 Sum_probs=119.0
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccc----hhhhcCCCCCCCCeEEEEeecccccC-
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEP----IENVLNPLPGKEDIVFLSINRYERKK- 207 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~i~~~g~~~~~K- 207 (390)
..+.|.+++.+......+.+.++.. .+++.....|-+...+....... ....+. ++. ++.+|+|.-.+++..
T Consensus 146 ~~~~dy~~~~~~~~~~if~~~f~~~-~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~-~~~-~k~vIlyaPTfr~~~~ 222 (388)
T COG1887 146 RNHWDYLISPNPESTAIFAEAFNID-KENILETGYPRNDKLFDEAGKTEDILLIQLALP-LPQ-DKKVILYAPTFRDNDV 222 (388)
T ss_pred eeeeeeeeeCChhhHHHHHHHhccc-ccceeecCcccchhhhhhccchhhhHHHhhhcC-Ccc-cCceEEecCCccCCcc
Confidence 4567889999988888877776633 45566555554333333221111 111221 233 578889998887765
Q ss_pred --C---HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH
Q psy12587 208 --N---LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK 282 (390)
Q Consensus 208 --~---~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~ 282 (390)
+ ....++..+.......+ +..+++-=..... +.+...- ...+.+.... +..++.++|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~----~~~ii~k~Hp~is--------~~~~~~~---~~~~~~~~vs--~~~di~dll~ 285 (388)
T COG1887 223 LIGTQFFNLDIDIEKLKEKLGEN----EYVIIVKPHPLIS--------DKIDKRY---ALDDFVLDVS--DNADINDLLL 285 (388)
T ss_pred ccchhhhhhhhhHHHHHHhhccC----CeEEEEecChhhh--------hhhhhhh---hccceeEecc--cchhHHHHHh
Confidence 2 22223222222222211 3555554322111 1111110 1122233322 2478899999
Q ss_pred hcceEEeCCCCCCCCccHHhhhhcCCCEEEecC--CC---cccce---ecCcceeeecCCHHHHHHHHHHHhcCChhHHH
Q psy12587 283 FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS--GG---PKESV---VDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQ 354 (390)
Q Consensus 283 ~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~--~~---~~e~i---~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~ 354 (390)
.+|++|.- ++.+++|+|...+|||..-. .. .+.+. .....|-++. +.+++.++|.....+++ ...
T Consensus 286 ~sDiLITD-----ySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~-~~~~li~ai~~~~~~~~-~~~ 358 (388)
T COG1887 286 VSDILITD-----YSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE-TQEELIDAIKPYDEDGN-YDL 358 (388)
T ss_pred hhCEEEee-----chHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc-cHHHHHHHHHhhhcccc-hhH
Confidence 99999952 46789999999999998432 11 11111 2233566776 88999999999988666 333
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy12587 355 QFSQFGFNRFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
+..+...+.+ ..+.-....+++.+.+
T Consensus 359 ~k~~~~~~~~-~~~~dg~ss~ri~~~i 384 (388)
T COG1887 359 EKLRVFNDKF-NSYEDGRSSERILKLI 384 (388)
T ss_pred HHHHHHHHhh-cccccccHHHHHHHHH
Confidence 3333333333 2333344555555443
No 191
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=95.13 E-value=0.24 Score=42.62 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=60.4
Q ss_pred CCeEEEEeeccccc-------CCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHc-CCCC
Q psy12587 193 EDIVFLSINRYERK-------KNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKL-KLSD 264 (390)
Q Consensus 193 ~~~~i~~~g~~~~~-------K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~-~l~~ 264 (390)
++..++++...... .....+++.+..+.+..|+ ..++|--........ . . ....+. +...
T Consensus 116 ~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~-----~~lvvK~HP~~~~~~--~--~---~~~~~~~~~~~ 183 (269)
T PF05159_consen 116 NKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPD-----AKLVVKPHPDERGGN--K--Y---SYLEELPNLPN 183 (269)
T ss_pred CCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCC-----CEEEEEECchhhCCC--C--h---hHhhhhhcCCC
Confidence 34444555555433 2456677888888777775 777664432111000 0 1 112221 2233
Q ss_pred cEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC
Q psy12587 265 NVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 265 ~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~ 316 (390)
.+.+....+ +.+++..||.++.-+ +.+-+||+.+|+||++....
T Consensus 184 ~~~~~~~~~---~~~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 184 VVIIDDDVN---LYELLEQSDAVVTIN-----STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred eEEECCCCC---HHHHHHhCCEEEEEC-----CHHHHHHHHcCCceEEecCc
Confidence 344433343 357999999888644 57889999999999997544
No 192
>KOG1192|consensus
Probab=95.10 E-value=0.67 Score=43.87 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=54.4
Q ss_pred CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC----CCcccc-eecCcceeeecC--CHH
Q psy12587 264 DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS----GGPKES-VVDGRTGFLCES--NEE 336 (390)
Q Consensus 264 ~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~----~~~~e~-i~~~~~g~~~~~--~~~ 336 (390)
.+|...+++|+.++. +....+..+-+ .-|+ .+++|++.+|+|+|+.+. .-.... .+.+..++.... +..
T Consensus 335 ~nV~~~~W~PQ~~ll--l~H~~v~~FvT-HgG~-nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~ 410 (496)
T KOG1192|consen 335 GNVVLSKWAPQNDLL--LDHPAVGGFVT-HGGW-NSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSE 410 (496)
T ss_pred CceEEecCCCcHHHh--cCCCcCcEEEE-CCcc-cHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcH
Confidence 578888999998754 22222222212 2222 356999999999997443 222333 344444444433 334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q psy12587 337 AFAKAMKKIVDNDGNIIQQFSQFGF 361 (390)
Q Consensus 337 ~l~~~i~~l~~~~~~~~~~~~~~~~ 361 (390)
.+.+++..++++++ ..+...+-+.
T Consensus 411 ~~~~~~~~il~~~~-y~~~~~~l~~ 434 (496)
T KOG1192|consen 411 ELLEAIKEILENEE-YKEAAKRLSE 434 (496)
T ss_pred HHHHHHHHHHcChH-HHHHHHHHHH
Confidence 48888889888877 5444444333
No 193
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=94.82 E-value=0.28 Score=43.95 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=65.3
Q ss_pred CCCeEEEEeecc-cccCCH--HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC---Cc
Q psy12587 192 KEDIVFLSINRY-ERKKNL--ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS---DN 265 (390)
Q Consensus 192 ~~~~~i~~~g~~-~~~K~~--~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~---~~ 265 (390)
+++++++..|.- .+.|.+ +.+.+.++.+.+. ++.+++.|+..+. +..++..+..+-+ ..
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~-------~~~vvl~Gg~~e~--------~~~~~i~~~~~~~~~~~~ 243 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDE-------GYQVVLFGSAKDH--------EAGNEILAALNTEQQAWC 243 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHC-------CCeEEEEeCHHhH--------HHHHHHHHhcccccccce
Confidence 356677777763 356654 3566777666543 2778888865543 3334444333211 12
Q ss_pred EEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 266 VLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 266 v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
+.+.|..+=.|+..+++.||++|..- .|..=+ |.|.|+|+|+
T Consensus 244 ~~l~g~~sL~el~ali~~a~l~I~nD----TGp~Hl-AaA~g~P~va 285 (348)
T PRK10916 244 RNLAGETQLEQAVILIAACKAIVTND----SGLMHV-AAALNRPLVA 285 (348)
T ss_pred eeccCCCCHHHHHHHHHhCCEEEecC----ChHHHH-HHHhCCCEEE
Confidence 56678888899999999999999654 233334 8899999998
No 194
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.71 E-value=0.055 Score=38.18 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=53.2
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE--ecCCChHH--HHHHHHhcceEEeCCCCCCCCc---cHHhhhh
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF--LTSPSDAA--KISLFKFCHCIIYTPSNEHFGI---VPIEAMF 305 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~--~g~~~~~e--~~~~~~~adv~v~ps~~e~~~~---~~~Ea~a 305 (390)
+.|+|+-+. +...+++.++++|.. .+.+ .+.....+ +...+..||++|++...-+-.. +--+|-.
T Consensus 2 vliVGG~~~-------~~~~~~~~~~~~G~~-~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk 73 (97)
T PF10087_consen 2 VLIVGGRED-------RERRYKRILEKYGGK-LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK 73 (97)
T ss_pred EEEEcCCcc-------cHHHHHHHHHHcCCE-EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH
Confidence 567787332 128899999999863 3333 13344444 8899999999998865433222 3346777
Q ss_pred cCCCEEEecCCCcccc
Q psy12587 306 CKRPVIAVNSGGPKES 321 (390)
Q Consensus 306 ~G~pvi~~~~~~~~e~ 321 (390)
.|+|++.++..+...+
T Consensus 74 ~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 74 YGIPIIYSRSRGVSSL 89 (97)
T ss_pred cCCcEEEECCCCHHHH
Confidence 8999999986655443
No 195
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=94.20 E-value=0.2 Score=33.78 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=41.3
Q ss_pred CCCcceEEeccc--cccccchhhHHHHHHHHHHHHHHHHHHhhcCCCEEEEcccccch-----hHHHhhcccEEEEeecC
Q psy12587 34 DGTLPVKVIGDW--LPRNIFGKFYALCMYLRMIVIALYVAWYSEKPDLVFCDLVSICI-----PILQAKQFKVLFYCHYP 106 (390)
Q Consensus 34 ~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~-----~~~~~~~~~~v~~~h~~ 106 (390)
.++++|.+++.. .....++.+.....+++.+ +++++.||||.|...+.+ ..++..+.+.|++-|+.
T Consensus 13 tngLKVYYlP~~~~~~~~t~Pt~~~~~pl~R~I-------lirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfTDHSL 85 (90)
T PF08288_consen 13 TNGLKVYYLPLKVFYNQCTLPTLFGSFPLLRNI-------LIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVFTDHSL 85 (90)
T ss_pred CCCeEEEeecchhhhcCcchHHHHHhhHHHHHH-------HHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEeecccc
Confidence 455677776532 2233344444444555543 445999999999965433 44556669999999974
No 196
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=94.05 E-value=0.084 Score=46.25 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=48.8
Q ss_pred HHHHHHHHhcceEEeCCCCCCCCccHHhhhhcC-CCEEEecC--CCcccceecCcceeeecC-CHHHHHHHH
Q psy12587 275 AAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCK-RPVIAVNS--GGPKESVVDGRTGFLCES-NEEAFAKAM 342 (390)
Q Consensus 275 ~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G-~pvi~~~~--~~~~e~i~~~~~g~~~~~-~~~~l~~~i 342 (390)
.+..+.|++|..+++|.-...+..-++|||++| +|||.++. -...+++.-....+.++. +..++.+.+
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL 299 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEIL 299 (302)
T ss_pred hHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHH
Confidence 446789999999999776656788899999999 57777663 456667755556666765 555544444
No 197
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=93.54 E-value=0.39 Score=41.07 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=49.6
Q ss_pred cCCCEEEEccccc-chhHHHh---hcccEEEEeecCCccccch----------hhhhhhhcccchhhHHHHHhcCcceEE
Q psy12587 75 EKPDLVFCDLVSI-CIPILQA---KQFKVLFYCHYPDQLLSKQ----------GSFLKSIYRFPLNKLEEWTTCKADKIV 140 (390)
Q Consensus 75 ~~~Dvi~~~~~~~-~~~~~~~---~~~~~v~~~h~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ad~ii 140 (390)
-+.||+|+.+... +++.+.. .+.|+++|-|+...-.... ....+.+...++..+.+.+++.||.|+
T Consensus 171 P~advyHsvstGyAgl~g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~Ad~I~ 250 (268)
T PF11997_consen 171 PKADVYHSVSTGYAGLLGALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRAADRIT 250 (268)
T ss_pred CCCCEEecCCccHHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhCeec
Confidence 6779999988543 3333222 2399999999864321110 233455555566677788899999999
Q ss_pred EccHhHHHH
Q psy12587 141 VNSEFTKSV 149 (390)
Q Consensus 141 ~~s~~~~~~ 149 (390)
+.++..+..
T Consensus 251 ~l~~~n~~~ 259 (268)
T PF11997_consen 251 PLYEYNREW 259 (268)
T ss_pred ccchhhHHH
Confidence 999975543
No 198
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=92.97 E-value=0.66 Score=37.23 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=40.1
Q ss_pred cCCCEEEEcccccc---hhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHH
Q psy12587 75 EKPDLVFCDLVSIC---IPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQ 151 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~---~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 151 (390)
.+||+++....... +..++..++|+++.---.. ....++ +++ +..+.+.+++..|.|.+.|+..++.+.
T Consensus 94 ~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNarls------~~s~~~-~~~-~~~~~r~~l~~f~~i~aqs~~da~r~~ 165 (186)
T PF04413_consen 94 WRPDLLIWVETELWPNLLREAKRRGIPVVLVNARLS------ERSFRR-YRR-FPFLFRPLLSRFDRILAQSEADAERFR 165 (186)
T ss_dssp H--SEEEEES----HHHHHH-----S-EEEEEE----------------------HHHHHHGGG-SEEEESSHHHHHHHH
T ss_pred hCCCEEEEEccccCHHHHHHHhhcCCCEEEEeeeec------cccchh-hhh-hHHHHHHHHHhCCEEEECCHHHHHHHH
Confidence 79999988774332 2333334478776432111 001111 111 245667888999999999999999999
Q ss_pred HHhccCCCCceeecCCC
Q psy12587 152 ATFRSLDHKCLDILYPS 168 (390)
Q Consensus 152 ~~~~~~~~~~~~vi~~~ 168 (390)
+. +.+++++.+.+|-
T Consensus 166 ~l--G~~~~~v~v~Gnl 180 (186)
T PF04413_consen 166 KL--GAPPERVHVTGNL 180 (186)
T ss_dssp TT--T-S--SEEE---G
T ss_pred Hc--CCCcceEEEeCcc
Confidence 97 5556789998873
No 199
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=92.89 E-value=0.52 Score=36.38 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=44.9
Q ss_pred cCCCEEEEccccc--chhHH--HhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 EKPDLVFCDLVSI--CIPIL--QAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 ~~~Dvi~~~~~~~--~~~~~--~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
..+|+|++++--. .+..+ .+.++|.++++|.....+.......+.. -..+..-...--||.|+++|.+.++.+
T Consensus 58 ~~~dll~aTsmldLa~l~gL~p~l~~~p~ilYFHENQl~YP~~~~~~rd~---~~~~~ni~saLaAD~v~FNS~~nr~sF 134 (168)
T PF12038_consen 58 HSYDLLFATSMLDLATLRGLRPDLANVPKILYFHENQLAYPVSPGQERDF---QYGMNNIYSALAADRVVFNSAFNRDSF 134 (168)
T ss_pred cCCCEEEeeccccHHHHHhhccCCCCCCEEEEEecCcccCCCCCCccccc---cHHHHHHHHHHhceeeeecchhhHHHH
Confidence 7789999998321 22211 2233999999996433222111111111 112333344557999999999999988
Q ss_pred HHHh
Q psy12587 151 QATF 154 (390)
Q Consensus 151 ~~~~ 154 (390)
.+-.
T Consensus 135 L~~~ 138 (168)
T PF12038_consen 135 LDGI 138 (168)
T ss_pred HHHH
Confidence 7643
No 200
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=92.81 E-value=0.45 Score=34.65 Aligned_cols=96 Identities=13% Similarity=0.171 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChH------------------------------HHHHHHHhcceEEeCC--CCCC
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDA------------------------------AKISLFKFCHCIIYTP--SNEH 295 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~------------------------------e~~~~~~~adv~v~ps--~~e~ 295 (390)
++.+++++-++..+|+ |.|.+++++. ....++..||++|.-- .+-.
T Consensus 9 dWRe~I~~ga~~~~L~--v~F~~PvtdH~~SD~~G~~iLG~e~~~fw~D~k~a~iN~iRT~~li~~aDvVVvrFGekYKQ 86 (141)
T PF11071_consen 9 DWREEIKEGAKAAGLP--VEFTSPVTDHEASDDCGVDILGEEPNKFWRDHKGAKINAIRTRTLIEKADVVVVRFGEKYKQ 86 (141)
T ss_pred hHHHHHHHHHHHcCCC--eEEecCCCCchhhhhhhHHHhCCCCccccccchhhhhhHHHHHHHHhhCCEEEEEechHHHH
Confidence 4556666666666653 5666655432 2356788899887631 1111
Q ss_pred CCcc--HHhhhhcCCCEEEecCCCcccceecCcc--eeeecCCHHHHHHHHHHHh
Q psy12587 296 FGIV--PIEAMFCKRPVIAVNSGGPKESVVDGRT--GFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 296 ~~~~--~~Ea~a~G~pvi~~~~~~~~e~i~~~~~--g~~~~~~~~~l~~~i~~l~ 346 (390)
+... .-=|.|.|+|.|+-.......-+++-.+ -.++. +++...+.+..++
T Consensus 87 WNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~e-t~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 87 WNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAE-TPEQVVEILRYVL 140 (141)
T ss_pred HHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhC-CHHHHHHHHHHHh
Confidence 2111 2236789999999665443333322122 22233 7788877777654
No 201
>KOG1021|consensus
Probab=91.69 E-value=3.9 Score=38.22 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=60.6
Q ss_pred HHHHHHHHhcceEEeCCCCCCCCccHHhhhhcC-CCEEEecC--CCcccceecCcceeeecCCHHHHHHHHHHHh-cCCh
Q psy12587 275 AAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCK-RPVIAVNS--GGPKESVVDGRTGFLCESNEEAFAKAMKKIV-DNDG 350 (390)
Q Consensus 275 ~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G-~pvi~~~~--~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~-~~~~ 350 (390)
....+.|+.|..+++|.-.+...-.++||+..| +|||.+|. ....+.++-..-++.++ .+++-+.|.+.| +-+.
T Consensus 335 ~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~--~~~v~~~~~~iL~~i~~ 412 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVP--EKDVPELIKNILLSIPE 412 (464)
T ss_pred chHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEE--HHHhhhHHHHHHHhcCH
Confidence 455689999999999998887888999999999 68888886 34455555455555565 344444434443 3344
Q ss_pred hHHHHHHHHHHHHHhhhc
Q psy12587 351 NIIQQFSQFGFNRFNEKF 368 (390)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~ 368 (390)
+....|.++....+.+.|
T Consensus 413 ~~~~~m~~~v~~~v~r~~ 430 (464)
T KOG1021|consen 413 EEVLRMRENVIRLVPRHF 430 (464)
T ss_pred HHHHHHHHHHHHHHHhhE
Confidence 355666666654443444
No 202
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=91.64 E-value=0.93 Score=33.12 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChH------------------------------HHHHHHHhcceEEeCC--CCCC
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDA------------------------------AKISLFKFCHCIIYTP--SNEH 295 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~------------------------------e~~~~~~~adv~v~ps--~~e~ 295 (390)
++.+++++-+++.+|+ |.|.+++++. ....++..||++|.-- .+-.
T Consensus 12 dWRe~I~~ga~~~~L~--v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~aDvvVvrFGekYKQ 89 (144)
T TIGR03646 12 DWREEIKEGAKSKNLP--IVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEKADVVIALFGEKYKQ 89 (144)
T ss_pred hHHHHHHHHHHHcCCC--eEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhhCCEEEEEechHHHH
Confidence 5557777777777663 6666665432 2356788899887631 1111
Q ss_pred CCcc--HHhhhhcCCCEEEecCCCcccceecCcce--eeecCCHHHHHHHHHHHh
Q psy12587 296 FGIV--PIEAMFCKRPVIAVNSGGPKESVVDGRTG--FLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 296 ~~~~--~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g--~~~~~~~~~l~~~i~~l~ 346 (390)
+... .-=|.|.|+|.|+-.......-+++-.+. .++. +++...+.+..++
T Consensus 90 WNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA~avae-tp~Qvv~iL~Yv~ 143 (144)
T TIGR03646 90 WNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNKAQAVVE-TPEQAIETLKYIL 143 (144)
T ss_pred HHHHhhHHHHHHcCCCeEEecchhccccHHHHhHHHHHHhc-CHHHHHHHHHHhh
Confidence 2111 22367899999996544333322221111 1222 6777777666543
No 203
>KOG0780|consensus
Probab=89.21 E-value=16 Score=32.76 Aligned_cols=170 Identities=13% Similarity=0.242 Sum_probs=99.0
Q ss_pred EEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC--CC
Q psy12587 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS--PS 273 (390)
Q Consensus 196 ~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~--~~ 273 (390)
.+=|.|+....+-.....+...+.+++ ++.++|+-.. .+...+...++++.+..+..+ |++|.|.=. +-
T Consensus 156 ~iP~ygsyte~dpv~ia~egv~~fKke-------~fdvIIvDTS-GRh~qe~sLfeEM~~v~~ai~-Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 156 RVPFYGSYTEADPVKIASEGVDRFKKE-------NFDVIIVDTS-GRHKQEASLFEEMKQVSKAIK-PDEIIFVMDASIG 226 (483)
T ss_pred CCeeEecccccchHHHHHHHHHHHHhc-------CCcEEEEeCC-CchhhhHHHHHHHHHHHhhcC-CCeEEEEEecccc
Confidence 344556777778888888999998887 4667777532 222234566688888877777 567766321 21
Q ss_pred ---hHHHHHHHHhcce--EEeCCC----CCCCCccHHhhhhcCCCEEEecCCCcccceecCcc----eeeecC-CHHHHH
Q psy12587 274 ---DAAKISLFKFCHC--IIYTPS----NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRT----GFLCES-NEEAFA 339 (390)
Q Consensus 274 ---~~e~~~~~~~adv--~v~ps~----~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~----g~~~~~-~~~~l~ 339 (390)
.++...+=...|+ +|++-. ..|..++.. .+.++||+--..|..-+-++.... +-++-- |.+.|.
T Consensus 227 Qaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaV--aaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glv 304 (483)
T KOG0780|consen 227 QAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAV--AATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLV 304 (483)
T ss_pred HhHHHHHHHHHHhhccceEEEEecccCCCCCceeeeh--hhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHH
Confidence 2222222333454 333321 122233444 357899998777655444433222 223333 889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 340 KAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 340 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+.+.++..+.. +++-++- -.-+|+...+.+++..+.+
T Consensus 305 ek~~ev~~~d~---~el~~kl---~~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 305 EKVQEVGKDDA---KELVEKL---KQGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred HHHHHHhhhhH---HHHHHHH---HhCCccHHHHHHHHHHHHh
Confidence 99999872222 2222222 1358999998888887764
No 204
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.01 E-value=5.8 Score=34.08 Aligned_cols=205 Identities=16% Similarity=0.146 Sum_probs=109.8
Q ss_pred HHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecc--cccC
Q psy12587 130 EWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRY--ERKK 207 (390)
Q Consensus 130 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~--~~~K 207 (390)
...-++|-.++.-...+.+.+.+. + -+...+.|+.-. -.++.+... +.+ ......+-+..|+- +...
T Consensus 173 lm~~rrc~~vf~rD~~Taq~L~~r--g---vna~~vGnpmmD-~L~p~~~~~--q~l---~~g~~viaLLPGsR~pea~~ 241 (412)
T COG4370 173 LMLRRRCWAVFPRDALTAQHLANR--G---VNAAYVGNPMMD-GLPPPERDP--QLL---LTGVPVIALLPGSRVPEAQT 241 (412)
T ss_pred HHhcccceeeeccccccHHHHHhc--C---CchhhccChhhc-cCCCccCCc--hhh---ccCCceEEecCCCCChHHHh
Confidence 334567777887777777777764 2 355666665321 122211100 000 12233444555554 3467
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC--------CcEEEecCCChHHHHH
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS--------DNVLFLTSPSDAAKIS 279 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~--------~~v~~~g~~~~~e~~~ 279 (390)
++..++.++..+.....+ +++.+..-+..+. .-+....++.|.. ++..+ ..+.+.+.+
T Consensus 242 nl~~il~slcal~~~~a~-------vvfw~ai~~~lpl-----~~l~~l~e~~gWq~~ad~~~kdnc~l--~lsqqsfad 307 (412)
T COG4370 242 NLAVILGSLCALPAMFAL-------VVFWAAIAPELPL-----LLLWTLEERQGWQPLADRFGKDNCSL--WLSQQSFAD 307 (412)
T ss_pred hHHHHHHHHhhhHHHHHH-------HHHHhccCcCCCH-----HHHHHHHHhcCcchhhhhhccCceEE--EEeHHHHHH
Confidence 888888877776654321 2222222111110 3344444444321 22222 356677788
Q ss_pred HHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcc---ccee-----cCcceeeecCCHHHHHHHHHHHhcCChh
Q psy12587 280 LFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPK---ESVV-----DGRTGFLCESNEEAFAKAMKKIVDNDGN 351 (390)
Q Consensus 280 ~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~---e~i~-----~~~~g~~~~~~~~~l~~~i~~l~~~~~~ 351 (390)
++..+|+.+-. -|...=.+...|+|||..+..|.. -+.+ -|..-.++.+++..-.....+++.|++
T Consensus 308 iLH~adaalgm-----AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~dp~- 381 (412)
T COG4370 308 ILHAADAALGM-----AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLGDPQ- 381 (412)
T ss_pred HHHHHHHHHHh-----ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhcChH-
Confidence 99999986532 255566788999999997753321 1110 022223344244444444445999999
Q ss_pred HHHHHHHHHHHHHh
Q psy12587 352 IIQQFSQFGFNRFN 365 (390)
Q Consensus 352 ~~~~~~~~~~~~~~ 365 (390)
....++.|+++.+-
T Consensus 382 r~~air~nGqrRiG 395 (412)
T COG4370 382 RLTAIRHNGQRRIG 395 (412)
T ss_pred HHHHHHhcchhhcc
Confidence 88888888887763
No 205
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=85.08 E-value=9.1 Score=32.55 Aligned_cols=88 Identities=10% Similarity=0.073 Sum_probs=61.7
Q ss_pred CCccHHhhhhcCCCEEEecC---CCcccceecCcceeeecCCH--HHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCH
Q psy12587 296 FGIVPIEAMFCKRPVIAVNS---GGPKESVVDGRTGFLCESNE--EAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSF 370 (390)
Q Consensus 296 ~~~~~~Ea~a~G~pvi~~~~---~~~~e~i~~~~~g~~~~~~~--~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (390)
++..+.=-|+|+-.|+.... .-..+.+.....=+-+..|. +++.++|..+.++++ ..+++++++++.+.+..+.
T Consensus 157 ~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~-~a~~Ia~~~~~~~~~~L~~ 235 (256)
T smart00672 157 WSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEHDK-KAQEIGKRGSEFIQQNLSM 235 (256)
T ss_pred chhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHcCH
Confidence 33345556788877777653 22233333333322233343 449999999999999 9999999999999888999
Q ss_pred HHHHHHHHHHHHhh
Q psy12587 371 QAFSIQLNTIVNNM 384 (390)
Q Consensus 371 ~~~~~~~~~~~~~~ 384 (390)
+.+..-+..++.+-
T Consensus 236 ~~~~~Y~~~ll~ey 249 (256)
T smart00672 236 EDVYDYMFHLLQEY 249 (256)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888887654
No 206
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=83.22 E-value=15 Score=27.50 Aligned_cols=56 Identities=16% Similarity=0.054 Sum_probs=41.7
Q ss_pred cEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC-CCcccceec
Q psy12587 265 NVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS-GGPKESVVD 324 (390)
Q Consensus 265 ~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~-~~~~e~i~~ 324 (390)
...++|+-..+++.++...|.+++.-. .-.+++.++..++|.|.... .-+.|.+++
T Consensus 47 gl~v~~F~~~~kiQsli~darIVISHa----G~GSIL~~~rl~kplIv~pr~s~y~elvDd 103 (161)
T COG5017 47 GLRVYGFDKEEKIQSLIHDARIVISHA----GEGSILLLLRLDKPLIVVPRSSQYQELVDD 103 (161)
T ss_pred ccEEEeechHHHHHHHhhcceEEEecc----CcchHHHHhhcCCcEEEEECchhHHHhhhh
Confidence 367889999999999999999777421 22478889999999887554 445565544
No 207
>KOG3349|consensus
Probab=83.09 E-value=5.9 Score=30.11 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=58.3
Q ss_pred CeEEEEeecccccCCHHHHHHH------HHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEE
Q psy12587 194 DIVFLSINRYERKKNLELAIYS------LNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVL 267 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~a------~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~ 267 (390)
..+|+.+|.-. ++.++.+ ...+.+++-. --++-+|.|..... +......+. ..+.
T Consensus 4 ~~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~~-----kLiiQ~Grg~~~~~------d~~~~~~k~----~gl~ 64 (170)
T KOG3349|consen 4 MTVFVTVGTTS----FDDLISCVLSEEFLQELQKRGFT-----KLIIQIGRGQPFFG------DPIDLIRKN----GGLT 64 (170)
T ss_pred eEEEEEecccc----HHHHHHHHcCHHHHHHHHHcCcc-----EEEEEecCCccCCC------CHHHhhccc----CCeE
Confidence 34678888744 6666644 3456665542 22344677743221 222222222 3344
Q ss_pred EecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC
Q psy12587 268 FLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 268 ~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~ 315 (390)
+.++--...+.+.++.||+++.- +...+.+|-+..|+|.|+-.+
T Consensus 65 id~y~f~psl~e~I~~AdlVIsH----AGaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 65 IDGYDFSPSLTEDIRSADLVISH----AGAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred EEEEecCccHHHHHhhccEEEec----CCcchHHHHHHcCCCEEEEeC
Confidence 44443334456899999999942 234589999999999888543
No 208
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=82.40 E-value=4.4 Score=27.17 Aligned_cols=65 Identities=11% Similarity=-0.058 Sum_probs=46.4
Q ss_pred HHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccc
Q psy12587 131 WTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYER 205 (390)
Q Consensus 131 ~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~ 205 (390)
.+....|.|++......+.+++. | .+++..+|-+.++..+.+....... ...-.--|.|+|++..
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~~--G--~~~V~yLPLAa~~~~~~p~~~~~~~------~~~~~~dIsFVG~~y~ 78 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRNL--G--AENVFYLPLAANPERFRPIPVDPEE------RKKYECDISFVGSLYP 78 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHHc--C--CCCEEEccccCCHHHhCcccCCccc------ccccCCCEEEeCcCcc
Confidence 44678899999999999988885 3 4799999999999988876432100 0113345788888653
No 209
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=82.22 E-value=7.3 Score=35.60 Aligned_cols=85 Identities=9% Similarity=0.016 Sum_probs=62.2
Q ss_pred cHHhhhhcCCCEEEecC---CCcccceecCcceeeecC--CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHH
Q psy12587 299 VPIEAMFCKRPVIAVNS---GGPKESVVDGRTGFLCES--NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAF 373 (390)
Q Consensus 299 ~~~Ea~a~G~pvi~~~~---~~~~e~i~~~~~g~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (390)
.+-=-|+||-.|+..+. .-..+.+.....-+-+.. +.+++.++|..+.++++ ..+++++++++++.+..+.+.+
T Consensus 229 RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~-~A~~IA~~g~~f~~~~L~~~~~ 307 (395)
T PF05686_consen 229 RLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDDDLSDLEEKVEWLNAHDD-EAQRIAENGQRFAREYLTMEDV 307 (395)
T ss_pred hHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEeccccchhhHHHHhhhcccChH-HHHHHHHHHHHHHHHHhhhhHH
Confidence 44445788888887543 122333444444344544 78999999999999998 9999999999999899999988
Q ss_pred HHHHHHHHHhh
Q psy12587 374 SIQLNTIVNNM 384 (390)
Q Consensus 374 ~~~~~~~~~~~ 384 (390)
..-+..++.+.
T Consensus 308 ~~Y~~~LL~eY 318 (395)
T PF05686_consen 308 YCYWRRLLLEY 318 (395)
T ss_pred HHHHHHHHHHH
Confidence 88887777654
No 210
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=81.60 E-value=38 Score=30.13 Aligned_cols=136 Identities=9% Similarity=0.054 Sum_probs=72.2
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC----ChHHHH----HHHHhcceEEeCC--CCCCCCcc
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP----SDAAKI----SLFKFCHCIIYTP--SNEHFGIV 299 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~----~~~e~~----~~~~~adv~v~ps--~~e~~~~~ 299 (390)
+-++.++|.|.-. ...-+...+.|. .+|.+.... +..++. .+...+|+++..| ..-..|..
T Consensus 174 ~k~vLvIGaGem~--------~l~a~~L~~~g~-~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i 244 (338)
T PRK00676 174 KASLLFIGYSEIN--------RKVAYYLQRQGY-SRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHL 244 (338)
T ss_pred CCEEEEEcccHHH--------HHHHHHHHHcCC-CEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCcee
Confidence 4688888988542 444555555665 456555432 333332 6678999999853 33344555
Q ss_pred HHhhhhcCCCEEEecCCCcccce--ecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy12587 300 PIEAMFCKRPVIAVNSGGPKESV--VDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQL 377 (390)
Q Consensus 300 ~~Ea~a~G~pvi~~~~~~~~e~i--~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (390)
..|.+.--.+-+.-|..-.+++- ....+..++ |.+++.+.+.+-+. .|++....+...+ +..+.++
T Consensus 245 ~~~~~~~~~~r~~iDLAvPRdId~v~~~~~v~Ly--~iDdL~~i~~~n~~----~R~~~~~~ae~iI------~~~~~~~ 312 (338)
T PRK00676 245 SWESLADIPDRIVFDFNVPRTFPWSETPFPHRYL--DMDFISEWVQKHLQ----CRKEVNNKHKLSL------REAAYKQ 312 (338)
T ss_pred eHHHHhhccCcEEEEecCCCCCccccccCCcEEE--EhHHHHHHHHHHHH----HHHHHHHHHHHHH------HHHHHHH
Confidence 55554422223555554444432 112222233 67777666655322 4444444444444 4566677
Q ss_pred HHHHHhhhh
Q psy12587 378 NTIVNNMLD 386 (390)
Q Consensus 378 ~~~~~~~~~ 386 (390)
.+.|++-..
T Consensus 313 ~~~~~~~~~ 321 (338)
T PRK00676 313 WESYEKKLS 321 (338)
T ss_pred HHHHHHHHh
Confidence 777765443
No 211
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=79.96 E-value=0.74 Score=34.15 Aligned_cols=45 Identities=11% Similarity=-0.029 Sum_probs=28.4
Q ss_pred HHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcc
Q psy12587 275 AAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPK 319 (390)
Q Consensus 275 ~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~ 319 (390)
.++.+++..+|++|--|..+..--.+-.++.+|+|+|...+|...
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSD 103 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHH
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCH
Confidence 346788888999998775444433455678889999997766543
No 212
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=78.77 E-value=12 Score=29.26 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEE------EecCCChH-------HHHHHHHhcceEEeC---CCCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVL------FLTSPSDA-------AKISLFKFCHCIIYT---PSNE 294 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~------~~g~~~~~-------e~~~~~~~adv~v~p---s~~e 294 (390)
.++.++|. -..+....+.++++.++.+.|....-- .....+.+ .=...+.+||++|.- -..+
T Consensus 5 ~~IYLAGP--~F~~~~i~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr~~ 82 (172)
T COG3613 5 KKIYLAGP--VFRPDEIELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFRPD 82 (172)
T ss_pred ceEEEecC--cCCHHHHHHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCCCC
Confidence 56777776 444555667778888888877521111 11111100 014678889987763 2233
Q ss_pred CCCccHHh---hhhcCCCEEEecC
Q psy12587 295 HFGIVPIE---AMFCKRPVIAVNS 315 (390)
Q Consensus 295 ~~~~~~~E---a~a~G~pvi~~~~ 315 (390)
.=+.+..| |.|.|+||++...
T Consensus 83 ~DsGTa~E~GYa~AlgKPv~~~~~ 106 (172)
T COG3613 83 PDSGTAFELGYAIALGKPVYAYRK 106 (172)
T ss_pred CCCcchHHHHHHHHcCCceEEEee
Confidence 44556666 6788999999654
No 213
>PRK04531 acetylglutamate kinase; Provisional
Probab=77.95 E-value=13 Score=33.92 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=40.2
Q ss_pred CeEEEEeec-ccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 194 DIVFLSINR-YERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 194 ~~~i~~~g~-~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
++.++-+|. +-. ...+.+...++.+...+- --+++.|++ +++.+..++.|++....---.+
T Consensus 37 ~~~VIKiGG~~l~-~~~~~l~~dla~L~~~G~------~~VlVHGgg-----------pqI~~~l~~~gie~~~v~G~RV 98 (398)
T PRK04531 37 RFAVIKVGGAVLR-DDLEALASSLSFLQEVGL------TPIVVHGAG-----------PQLDAELDAAGIEKETVNGLRV 98 (398)
T ss_pred cEEEEEEChHHhh-cCHHHHHHHHHHHHHCCC------cEEEEECCC-----------HHHHHHHHHcCCCcEEECCEec
Confidence 444454444 333 346788888888876532 234455665 7888999999986544322245
Q ss_pred ChHHHHH
Q psy12587 273 SDAAKIS 279 (390)
Q Consensus 273 ~~~e~~~ 279 (390)
++++..+
T Consensus 99 Td~~tl~ 105 (398)
T PRK04531 99 TSPEALA 105 (398)
T ss_pred CCHHHHH
Confidence 5554433
No 214
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=76.68 E-value=48 Score=28.44 Aligned_cols=107 Identities=12% Similarity=0.119 Sum_probs=65.9
Q ss_pred EEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCc----c--hhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 197 FLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNI----E--NVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 197 i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~----~--~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
++.+|- ..-...+.+++.++.+++.+ +.++..|...+++. . ..+-...+++..++.|++=-..++
T Consensus 29 ~~iaGP-Csie~~~~~~~~A~~lk~~g-------~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~- 99 (266)
T PRK13398 29 IIIAGP-CAVESEEQMVKVAEKLKELG-------VHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVM- 99 (266)
T ss_pred EEEEeC-CcCCCHHHHHHHHHHHHHcC-------CCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeC-
Confidence 344444 33346788999999998853 56777774443332 1 345557888899999885333333
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHh-hhhcCCCEEEecC
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIE-AMFCKRPVIAVNS 315 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~E-a~a~G~pvi~~~~ 315 (390)
+..++..+...+|++-.+|.. .....+++ +...|+||+.++.
T Consensus 100 --d~~~~~~l~~~vd~~kIga~~-~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 100 --DTRDVEEVADYADMLQIGSRN-MQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred --ChhhHHHHHHhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCC
Confidence 333333333448888888752 22333444 4458999999774
No 215
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=76.32 E-value=46 Score=28.12 Aligned_cols=98 Identities=9% Similarity=0.130 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcc------hhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHH
Q psy12587 207 KNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIE------NVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISL 280 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~------~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~ 280 (390)
..-+.+++.++.+++. .+.++.-|...+++.. +.+-.+.+.+..++.|++ .+....+..++..+
T Consensus 26 Es~e~~~~~a~~~~~~-------g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~---~~Tev~d~~~v~~~ 95 (250)
T PRK13397 26 ESYDHIRLAASSAKKL-------GYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL---SVSEIMSERQLEEA 95 (250)
T ss_pred CCHHHHHHHHHHHHHc-------CCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC---EEEeeCCHHHHHHH
Confidence 3557788888887665 3677777766655431 345668899999999874 22333445555555
Q ss_pred HHhcceEEeCCCCCCCCccHHhhhh-cCCCEEEecC
Q psy12587 281 FKFCHCIIYTPSNEHFGIVPIEAMF-CKRPVIAVNS 315 (390)
Q Consensus 281 ~~~adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~ 315 (390)
...+|++-.||. +.....++++++ .|+||+.+..
T Consensus 96 ~e~vdilqIgs~-~~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 96 YDYLDVIQVGAR-NMQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HhcCCEEEECcc-cccCHHHHHHHHccCCeEEEeCC
Confidence 567999988885 233355676664 7999999774
No 216
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=76.27 E-value=6.8 Score=29.65 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcc-----eEEeCCCCCCCCccHHhhhh-cCCCEEE---ecCCCc
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCH-----CIIYTPSNEHFGIVPIEAMF-CKRPVIA---VNSGGP 318 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad-----v~v~ps~~e~~~~~~~Ea~a-~G~pvi~---~~~~~~ 318 (390)
+..+.+++.++++|+ .+.|...=...++.+.+.++. +++.|.-+...+..+.+|+. .++|+|= |+.-.-
T Consensus 30 ~i~~~~~~~a~~~g~--~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aR 107 (146)
T PRK05395 30 DIEALLEEEAAELGV--ELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAR 107 (146)
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCcccc
Confidence 444566666666665 366666556667777777663 56677767778888999986 6899986 333222
Q ss_pred c-----cceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 319 K-----ESVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 319 ~-----e~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
. .++.+-..|.+.-.-.....-++..++
T Consensus 108 E~fR~~S~is~~a~G~I~G~G~~gY~lAl~al~ 140 (146)
T PRK05395 108 EEFRHHSYISDVAVGVICGFGADGYLLALEALA 140 (146)
T ss_pred ccccccccccccceEEEeeCCHHhHHHHHHHHH
Confidence 1 223333345444335556666665554
No 217
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=75.43 E-value=3.6 Score=30.95 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=25.8
Q ss_pred CcchhhhHhh-HhhhhcCCceeec-CCccc-cccCCCcceEEecc
Q psy12587 3 GATARLTITA-TAWGATGPRTTAH-DHCFK-ETKDGTLPVKVIGD 44 (390)
Q Consensus 3 GG~~~~~~~l-~~L~~~G~~V~~~-~~~~~-~~~~~~~~i~~~~~ 44 (390)
+|--.-...+ ++|.++||+|++. ...+. .....++....+..
T Consensus 9 ~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~ 53 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPG 53 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSS
T ss_pred hhHHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecC
Confidence 3444556778 9999999999977 33333 33455666666543
No 218
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=74.72 E-value=69 Score=29.73 Aligned_cols=173 Identities=10% Similarity=0.127 Sum_probs=93.3
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccc--ccCCHH
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYE--RKKNLE 210 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~--~~K~~~ 210 (390)
+...|.|.-..+...+.+.+.....+++-+.|+..++.. ..-..-....++ +. ..+-+++.+....+. ...|.+
T Consensus 61 l~E~d~V~Gg~~kL~~~I~~~~~~~~p~~I~V~ttC~~~-~IGdDi~~v~~~-~~--~~~~~vi~v~t~gf~g~~~~G~~ 136 (427)
T cd01971 61 ATETEIVFGGEDRLRELIKSTLSIIDADLFVVLTGCIAE-IIGDDVGAVVSE-FQ--EGGAPIVYLETGGFKGNNYAGHE 136 (427)
T ss_pred CCccceEeCCHHHHHHHHHHHHHhCCCCEEEEEcCCcHH-HhhcCHHHHHHH-hh--hcCCCEEEEECCCcCcccccHHH
Confidence 445677777777777777776655544555555554322 111111111111 11 111334444333333 456888
Q ss_pred HHHHHHHH-HHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEe
Q psy12587 211 LAIYSLNS-LRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIY 289 (390)
Q Consensus 211 ~ll~a~~~-l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ 289 (390)
..++++-+ +..+... ..+-.+.|+|..+........-..+++++.++.|+..++.+.+..+-+|+ .-+.+|.+-+.
T Consensus 137 ~a~~al~~~~~~~~~~--~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei-~~~~~A~~niv 213 (427)
T cd01971 137 IVLKAIIDQYVGQSEE--KEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEEL-RSIPKAQFNLV 213 (427)
T ss_pred HHHHHHHHHhccCCCC--CCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHH-HhcccCcEEEE
Confidence 87777764 3221100 01246778885321111001112889999999999888887766666665 34667776555
Q ss_pred CCCCCCCCccHHhhh--hcCCCEEEec
Q psy12587 290 TPSNEHFGIVPIEAM--FCKRPVIAVN 314 (390)
Q Consensus 290 ps~~e~~~~~~~Ea~--a~G~pvi~~~ 314 (390)
.+.. .+..+.++| .+|+|.+..+
T Consensus 214 ~~~~--~g~~~a~~L~~~~giP~i~~~ 238 (427)
T cd01971 214 LSPW--VGLEFAQHLEEKYGQPYIHSP 238 (427)
T ss_pred EcHh--hHHHHHHHHHHHhCCceEecC
Confidence 4432 245666666 4799988764
No 219
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=74.38 E-value=57 Score=28.39 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=48.5
Q ss_pred cchhhhHhh-HhhhhcCCceeec--CCccccc---------------cCCCcceEEeccccccccchhhHHHHHHHHHHH
Q psy12587 4 ATARLTITA-TAWGATGPRTTAH--DHCFKET---------------KDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIV 65 (390)
Q Consensus 4 G~~~~~~~l-~~L~~~G~~V~~~--~~~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (390)
|-++.+..| +.|.++||.|-++ ++..... ...++-++. .+..+.+..+..-.+...
T Consensus 63 GKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs------~~srG~lGGlS~at~~~i 136 (323)
T COG1703 63 GKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRS------SPSRGTLGGLSRATREAI 136 (323)
T ss_pred chHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEee------cCCCccchhhhHHHHHHH
Confidence 446678888 9999999998877 2211110 111222222 222233334444444333
Q ss_pred HHHHHHHhh-cCCCEEEEcccccc---hhHHHhhcccEEEEeec
Q psy12587 66 IALYVAWYS-EKPDLVFCDLVSIC---IPILQAKQFKVLFYCHY 105 (390)
Q Consensus 66 ~~~~~~~~~-~~~Dvi~~~~~~~~---~~~~~~~~~~~v~~~h~ 105 (390)
. +++ ..||+|++.+...+ .-+......-+++...+
T Consensus 137 ~-----~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg 175 (323)
T COG1703 137 K-----LLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG 175 (323)
T ss_pred H-----HHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCC
Confidence 2 445 89999999885433 23444444555555554
No 220
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=72.57 E-value=12 Score=28.19 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc----c-eEEeCCCCCCCCccHHhhhh-cCCCEEE---ecCCCc
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC----H-CIIYTPSNEHFGIVPIEAMF-CKRPVIA---VNSGGP 318 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a----d-v~v~ps~~e~~~~~~~Ea~a-~G~pvi~---~~~~~~ 318 (390)
+..+.+++.++++|+ .+.|...=...++.+.+.++ | +++.|.-+...+..+.+|++ .++|+|= |+.-.-
T Consensus 28 di~~~~~~~a~~~g~--~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSNi~aR 105 (141)
T TIGR01088 28 EIVEIIETFAAQLNV--ELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSNVHAR 105 (141)
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCCcccc
Confidence 444566666666665 36666655667777777776 3 56777777778889999986 6899986 333211
Q ss_pred c-----cceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 319 K-----ESVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 319 ~-----e~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
. .++.+-..|.+.-.-.+...-++..++
T Consensus 106 E~fR~~S~is~~~~G~I~G~G~~gY~lAl~a~~ 138 (141)
T TIGR01088 106 EEFRHHSYTAPVAGGVIVGLGAQGYLLALRYLV 138 (141)
T ss_pred ccccccccccccceEEEeecCHHHHHHHHHHHH
Confidence 1 233333345443325556666665544
No 221
>KOG0832|consensus
Probab=71.80 E-value=29 Score=28.53 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=33.7
Q ss_pred CCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE-ecCCCcccce
Q psy12587 261 KLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA-VNSGGPKESV 322 (390)
Q Consensus 261 ~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~-~~~~~~~e~i 322 (390)
.+++...|...... |++|.....|. ..+++||.-+++|+|+ -|....++++
T Consensus 161 ~~pd~~~f~~t~~~----------D~vvvln~~e~-~sAilEA~K~~IPTIgIVDtN~~P~li 212 (251)
T KOG0832|consen 161 SLPDALCFLPTLTP----------DLVVVLNPEEN-HSAILEAAKMAIPTIGIVDTNCNPELI 212 (251)
T ss_pred CCCcceeecccCCc----------ceeEecCcccc-cHHHHHHHHhCCCeEEEecCCCCccce
Confidence 34566666554443 77776554443 4589999999999999 3444566665
No 222
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=71.01 E-value=99 Score=29.55 Aligned_cols=78 Identities=19% Similarity=0.099 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhh--hcCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAM--FCKR 308 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~--a~G~ 308 (390)
-.+.|+|..+... ....-..+++++.+.+|+.-++.+.+..+-+++. -+.+|++-|+++.. .|..+.++| -+|+
T Consensus 159 ~~VNIiG~~~l~~-~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~-~l~~A~~NIv~~~~--~g~~~A~~Le~~fGi 234 (511)
T TIGR01278 159 PSVNLLGPASLGF-HHRHDLIELRRLLKTLGIEVNVVAPWGASIADLA-RLPAAWLNICPYRE--IGLMAAEYLKEKFGQ 234 (511)
T ss_pred CcEEEEeCCCCCC-CCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHH-hcccCcEEEEechH--HHHHHHHHHHHHhCC
Confidence 4678888654211 1112237899999999998888887777777754 46888887776542 445566666 5799
Q ss_pred CEEE
Q psy12587 309 PVIA 312 (390)
Q Consensus 309 pvi~ 312 (390)
|.+.
T Consensus 235 P~i~ 238 (511)
T TIGR01278 235 PYIT 238 (511)
T ss_pred Cccc
Confidence 9874
No 223
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=70.40 E-value=1e+02 Score=29.50 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhh--cCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMF--CKR 308 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a--~G~ 308 (390)
-.+.|+|...... ....-..+++++.+.+|+.-++.+.+..+-+++ .-+..|++-|..+.. ++..+.|+|. +|+
T Consensus 159 ~~VNIiG~~~l~f-~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di-~~l~~A~~nivl~~~--~g~~~A~~Lee~fGi 234 (519)
T PRK02910 159 PSVNLLGPTALGF-HHRDDLTELRRLLATLGIDVNVVAPLGASPADL-KRLPAAWFNVVLYRE--IGESAARYLEREFGQ 234 (519)
T ss_pred CeEEEEecCccCC-CChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHH-HhcccCcEEEEeCHH--HHHHHHHHHHHHhCC
Confidence 4688888643211 111223789999999999888888777777775 446777776654432 4556667755 789
Q ss_pred CEEE
Q psy12587 309 PVIA 312 (390)
Q Consensus 309 pvi~ 312 (390)
|.+.
T Consensus 235 P~i~ 238 (519)
T PRK02910 235 PYVK 238 (519)
T ss_pred cccc
Confidence 9875
No 224
>PRK07742 phosphate butyryltransferase; Validated
Probab=70.26 E-value=75 Score=27.83 Aligned_cols=78 Identities=9% Similarity=0.073 Sum_probs=49.9
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCC--CCcEEEec
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKL--SDNVLFLT 270 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l--~~~v~~~g 270 (390)
++.+|++... .-+..++++....+++. ++++++|+. +.+++.++++++ .+++.+..
T Consensus 14 ~~~ri~~~~~-----~d~~vl~Aa~~a~~e~~------~~~iLvG~~-----------~~I~~~~~~~~l~~~~~~~Ii~ 71 (299)
T PRK07742 14 PKKTVAVAVA-----EDEEVIEAVAKAIELQL------ARFRLYGNQ-----------EKIMGMLQEHGLQTSEHIEIIH 71 (299)
T ss_pred CCCeEEEeCC-----CCHHHHHHHHHHHHcCC------ceEEEECCH-----------HHHHHHHHHCCCCCCCCcEEEC
Confidence 3345555543 12567788777777654 789999965 778888888876 45677765
Q ss_pred CCChHH----HHHHHH--hcceEEeCCC
Q psy12587 271 SPSDAA----KISLFK--FCHCIIYTPS 292 (390)
Q Consensus 271 ~~~~~e----~~~~~~--~adv~v~ps~ 292 (390)
.-+..+ -..+++ .+|.++....
T Consensus 72 ~~~~~~s~~~a~~lV~~G~aD~lvsG~~ 99 (299)
T PRK07742 72 AQSSAEAAELAVKAVRNGEADVLMKGNV 99 (299)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEECCc
Confidence 533332 134555 7888886443
No 225
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=70.10 E-value=90 Score=28.70 Aligned_cols=106 Identities=11% Similarity=0.080 Sum_probs=62.8
Q ss_pred HHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCC-
Q psy12587 215 SLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN- 293 (390)
Q Consensus 215 a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~- 293 (390)
+++.|...+. -.++|++... +.-++++++++ ...++-+++..++..+|+++..+..
T Consensus 193 va~~L~~~g~------~~i~IaNRT~----------erA~~La~~~~-------~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 193 VAKHLAEKGV------KKITIANRTL----------ERAEELAKKLG-------AEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred HHHHHHhCCC------CEEEEEcCCH----------HHHHHHHHHhC-------CeeecHHHHHHhhhhCCEEEEecCCC
Confidence 4455555543 5788888764 77788888886 2236678889999999999975432
Q ss_pred -CCCCccH-HhhhhcCCCEEEecCCCcccceecC--cceeeecCCHHHHHHHHHH
Q psy12587 294 -EHFGIVP-IEAMFCKRPVIAVNSGGPKESVVDG--RTGFLCESNEEAFAKAMKK 344 (390)
Q Consensus 294 -e~~~~~~-~Ea~a~G~pvi~~~~~~~~e~i~~~--~~g~~~~~~~~~l~~~i~~ 344 (390)
.-.+... -+++.-....+.-|.+-.+++-.+- -+|+.+- |.+++.....+
T Consensus 250 ~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~l~~v~l~-~iDDL~~iv~~ 303 (414)
T COG0373 250 HPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGELPNVFLY-TIDDLEEIVEE 303 (414)
T ss_pred ccccCHHHHHHHHhcccCeEEEEecCCCCCCccccCcCCeEEE-ehhhHHHHHHH
Confidence 1222233 3444544556777877666654321 1233333 45555555444
No 226
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=70.02 E-value=21 Score=32.24 Aligned_cols=40 Identities=8% Similarity=0.041 Sum_probs=24.8
Q ss_pred HHHHHHHh--cceEEeCCCCCCCCccHHhhhhcCCCEEEecC
Q psy12587 276 AKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 276 e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~ 315 (390)
.+.++.+. +|+++........-...++|+..|++|...+-
T Consensus 82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANK 123 (385)
T PRK05447 82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANK 123 (385)
T ss_pred HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCH
Confidence 34455553 57777654322111357899999999999663
No 227
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=69.98 E-value=91 Score=28.67 Aligned_cols=188 Identities=12% Similarity=0.063 Sum_probs=100.9
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCc---cchhhhcCCCCCCCCeEEEEeeccc---cc
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTP---EPIENVLNPLPGKEDIVFLSINRYE---RK 206 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~~~g~~~---~~ 206 (390)
+...|.|.-..+...+.+.+.....+++-+.|+..++ .+..-..-. ..+.+.. +-+++.+....+. ..
T Consensus 62 l~E~d~V~Gg~~~L~~~i~~~~~~~~P~~i~v~~tC~-~~~iGdDi~~v~~~~~~~~-----~~~vi~v~t~gf~g~~~~ 135 (406)
T cd01967 62 MQEKDIVFGGEKKLKKAIKEAYERFPPKAIFVYSTCP-TGLIGDDIEAVAKEASKEL-----GIPVIPVNCEGFRGVSQS 135 (406)
T ss_pred CCccceeeCcHHHHHHHHHHHHHhCCCCEEEEECCCc-hhhhccCHHHHHHHHHHhh-----CCCEEEEeCCCeeCCccc
Confidence 4455677666677777777665544344455555443 222221111 1111111 1233333333322 34
Q ss_pred CCHHHHHHHHHHHHhhcc-cccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcc
Q psy12587 207 KNLELAIYSLNSLRSRLS-DEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCH 285 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~-~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad 285 (390)
.|.+..++++........ .....+-.+.|+|..... .-..+++++.++.|+.-+..+.+..+-+|+.. +.+|.
T Consensus 136 ~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~-----~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~ 209 (406)
T cd01967 136 LGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIG-----GDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAK 209 (406)
T ss_pred HHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccc-----hhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCC
Confidence 567877777765432210 000113567888864321 12378999999999987777887788888655 77777
Q ss_pred eEEeCCCCCCCCccHHhhhh--cCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcC
Q psy12587 286 CIIYTPSNEHFGIVPIEAMF--CKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDN 348 (390)
Q Consensus 286 v~v~ps~~e~~~~~~~Ea~a--~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~ 348 (390)
+-+..+.. ++..+.+.|. +|+|.+....-| +. +.+++.+.|.+++..
T Consensus 210 ~niv~~~~--~~~~~a~~L~~r~GiP~~~~~p~G-------------~~-~t~~~l~~l~~~lg~ 258 (406)
T cd01967 210 LNLVHCSR--SMNYLAREMEERYGIPYMEVNFYG-------------FE-DTSESLRKIAKFFGD 258 (406)
T ss_pred EEEEEChH--HHHHHHHHHHHhhCCCEEEecCCc-------------HH-HHHHHHHHHHHHhCC
Confidence 66554321 2444455443 799997532111 12 556666666666654
No 228
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=68.90 E-value=99 Score=28.70 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=95.9
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCc---cchhhhcCCCCCCCCeEEEEeeccc---cc
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTP---EPIENVLNPLPGKEDIVFLSINRYE---RK 206 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~~~g~~~---~~ 206 (390)
+...|.|+-..+...+.+.+.+....++-+.|+..++ ....-..-. ..+++.. +-+++.+....+. ..
T Consensus 64 l~E~dvVfGg~~kL~~aI~~~~~~~~P~~I~V~ttC~-~~iIGdDi~~v~~~~~~~~-----~~pvi~v~t~gf~g~~~~ 137 (426)
T cd01972 64 LTEKDVVFGGEKKLEDTIKEAYSRYKPKAIFVATSCA-TGIIGDDVESVVEELEDEI-----GIPVVALHCEGFKGKHWR 137 (426)
T ss_pred CCccceecchHHHHHHHHHHHHHhCCCCEEEEECCCh-HHHhccCHHHHHHHHHHhh-----CCCEEEEeCCccCCccHh
Confidence 5556777777777777777766544344445444432 222211101 1111111 1334444443332 23
Q ss_pred CCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcce
Q psy12587 207 KNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHC 286 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv 286 (390)
.|.+..++++.+......+.....-.+.|+|...........-..+++++.+++|+.-+..+.|..+-+|+ .-+..|.+
T Consensus 138 ~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei-~~~~~A~l 216 (426)
T cd01972 138 SGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEEL-ERASEAAA 216 (426)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHH-HhcccCCE
Confidence 67888887776543221000001235778886643211111223789999999999888888777777775 44667776
Q ss_pred EEeCCCCCCCCccHHhhh--hcCCCEEEec
Q psy12587 287 IIYTPSNEHFGIVPIEAM--FCKRPVIAVN 314 (390)
Q Consensus 287 ~v~ps~~e~~~~~~~Ea~--a~G~pvi~~~ 314 (390)
-+..+.. ++..+.+.| -+|+|.+..+
T Consensus 217 niv~~~~--~g~~~a~~Lee~~GiP~~~~~ 244 (426)
T cd01972 217 NVTLCLD--LGYYLGAALEQRFGVPEIKAP 244 (426)
T ss_pred EEEEChh--HHHHHHHHHHHHhCCCeEecC
Confidence 6654422 456677777 4899988653
No 229
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=68.35 E-value=74 Score=27.01 Aligned_cols=101 Identities=14% Similarity=0.070 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-----CChHHHHHHHH
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-----PSDAAKISLFK 282 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~-----~~~~e~~~~~~ 282 (390)
+-..+.+.+-++.... +.++.++..... ....|.+.+.+..+++|.. .+..+.. .++++..+.+.
T Consensus 12 ~~~~i~~~~~~lag~~------~~rI~~iptAS~---~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~~a~~~~~~~~l~ 81 (250)
T TIGR02069 12 GDREILREFVSRAGGE------DAIIVIITSASE---EPREVGERYITIFSRLGVK-EVKILDVREREDASDENAIALLS 81 (250)
T ss_pred ChHHHHHHHHHHhCCC------CceEEEEeCCCC---ChHHHHHHHHHHHHHcCCc-eeEEEecCChHHccCHHHHHHHh
Confidence 4444666665554332 256666664432 1235667777777888873 3444332 23456678899
Q ss_pred hcceEEeCCC--------CCCCCc--cHHhhhhcCCCEEEecCCCc
Q psy12587 283 FCHCIIYTPS--------NEHFGI--VPIEAMFCKRPVIAVNSGGP 318 (390)
Q Consensus 283 ~adv~v~ps~--------~e~~~~--~~~Ea~a~G~pvi~~~~~~~ 318 (390)
.||++++..- +...++ .+-++...|+|++.+..|..
T Consensus 82 ~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 82 NATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred hCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 9998887521 233343 35678889998888776543
No 230
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=68.32 E-value=13 Score=28.10 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc----c-eEEeCCCCCCCCccHHhhhh-cCCCEEE---ecCC--
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC----H-CIIYTPSNEHFGIVPIEAMF-CKRPVIA---VNSG-- 316 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a----d-v~v~ps~~e~~~~~~~Ea~a-~G~pvi~---~~~~-- 316 (390)
+..+.+++.++++++ .+.|...=...++.+.+.++ | +++.|.-+...+..+.+|++ .++|+|= |+.-
T Consensus 30 ~i~~~~~~~a~~~g~--~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aR 107 (146)
T PRK13015 30 DVEALCRAAAEALGL--EVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHISNVHAR 107 (146)
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcCCcccc
Confidence 334556666666664 36666555556666666654 4 56667767778888999886 6899986 3331
Q ss_pred -Ccc--cceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 317 -GPK--ESVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 317 -~~~--e~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
.++ .++.+...|.+.-.-+....-++..++
T Consensus 108 E~fR~~S~is~~~~G~I~G~G~~gY~lAl~al~ 140 (146)
T PRK13015 108 EAFRHHSYVSAIADGVICGLGTEGYRLALRRLA 140 (146)
T ss_pred ccccccccccCceeEEEeeCCHHHHHHHHHHHH
Confidence 111 234344455554335666666666554
No 231
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=68.15 E-value=64 Score=26.50 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHc-CCCCcEEEecCCChHHHHHHHHhcce
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKL-KLSDNVLFLTSPSDAAKISLFKFCHC 286 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~-~l~~~v~~~g~~~~~e~~~~~~~adv 286 (390)
+.+.+.+.+..+.+. +.++.++...... ..+|...+.+..+++ |.. +..+...+.++..+.+..||+
T Consensus 16 ~~~~l~~~l~~~~~~-------~~~i~~IptAs~~---~~~~~~~~~~a~~~l~G~~--~~~~~~~~~~~~~~~l~~ad~ 83 (212)
T cd03146 16 ALPAIDDLLLSLTKA-------RPKVLFVPTASGD---RDEYTARFYAAFESLRGVE--VSHLHLFDTEDPLDALLEADV 83 (212)
T ss_pred chHHHHHHHHHhccC-------CCeEEEECCCCCC---HHHHHHHHHHHHhhccCcE--EEEEeccCcccHHHHHhcCCE
Confidence 455555555555322 3678888876552 346777888888888 763 333322334555789999999
Q ss_pred EEeCCC--------CCCCCc--cHHhhhhcCCCEEEecCC
Q psy12587 287 IIYTPS--------NEHFGI--VPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 287 ~v~ps~--------~e~~~~--~~~Ea~a~G~pvi~~~~~ 316 (390)
+++|.- +...++ .+-++...|+|++.+..|
T Consensus 84 I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAG 123 (212)
T cd03146 84 IYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAG 123 (212)
T ss_pred EEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHh
Confidence 999852 111222 344566679999887654
No 232
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=67.86 E-value=17 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=25.3
Q ss_pred HHHHHhcceEEeCCCC-CCCCccHHh---hhhcCCCEEEecC
Q psy12587 278 ISLFKFCHCIIYTPSN-EHFGIVPIE---AMFCKRPVIAVNS 315 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~-e~~~~~~~E---a~a~G~pvi~~~~ 315 (390)
.+.+..||++|..... ..-+.+.+| |.+.|+||++-..
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 5788999998875332 223345555 6788999999553
No 233
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=67.83 E-value=28 Score=31.24 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=52.9
Q ss_pred EEEecCC------ChHHHHHHHHhcceEEeCCC--CCCCCc-cHHhhhhcCCCEEEec--CCCcccceecCcceeeecC-
Q psy12587 266 VLFLTSP------SDAAKISLFKFCHCIIYTPS--NEHFGI-VPIEAMFCKRPVIAVN--SGGPKESVVDGRTGFLCES- 333 (390)
Q Consensus 266 v~~~g~~------~~~e~~~~~~~adv~v~ps~--~e~~~~-~~~Ea~a~G~pvi~~~--~~~~~e~i~~~~~g~~~~~- 333 (390)
|...|.. +.....++++.....+..-. .+++-. ++.+|+..|+-+|.-. .....+++.. ..-+-+++
T Consensus 204 vd~yG~c~~~~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~-~SfI~~~df 282 (349)
T PF00852_consen 204 VDSYGKCGNNNPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPP-NSFIHVDDF 282 (349)
T ss_dssp EEE-SSTT--SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-G-GGSEEGGGS
T ss_pred eEccCCCCCCCCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCC-CCccchhcC
Confidence 5555554 22335678888888777533 333332 6889999997666655 5566677655 23333444
Q ss_pred -CHHHHHHHHHHHhcCChhHHHH
Q psy12587 334 -NEEAFAKAMKKIVDNDGNIIQQ 355 (390)
Q Consensus 334 -~~~~l~~~i~~l~~~~~~~~~~ 355 (390)
++++|++-|..+.+|++ ++.+
T Consensus 283 ~s~~~La~yl~~l~~n~~-~Y~~ 304 (349)
T PF00852_consen 283 KSPKELADYLKYLDKNDE-LYNK 304 (349)
T ss_dssp SSHHHHHHHHHHHHT-HH-HHH-
T ss_pred CCHHHHHHHHHHHhcCHH-HHhh
Confidence 89999999999998888 5544
No 234
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=67.83 E-value=29 Score=26.96 Aligned_cols=82 Identities=9% Similarity=-0.001 Sum_probs=49.2
Q ss_pred CeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC
Q psy12587 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS 273 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~ 273 (390)
...+.++|. ....=...++.++..+ + ..+.+++......+.+.++.+..++.+.+.| ..+.+. +
T Consensus 2 gl~i~~vGD-~~~rv~~Sl~~~~~~~----g------~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~---~ 65 (158)
T PF00185_consen 2 GLKIAYVGD-GHNRVAHSLIELLAKF----G------MEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG--GKITIT---D 65 (158)
T ss_dssp TEEEEEESS-TTSHHHHHHHHHHHHT----T------SEEEEESSGGGGGSHHHHHHHHHHHHHHHHT--TEEEEE---S
T ss_pred CCEEEEECC-CCChHHHHHHHHHHHc----C------CEEEEECCCcccCCCCHHHHHHHHHHHHHhC--CCeEEE---e
Confidence 457889995 2233334455555544 2 5688888655333344456666677777665 456665 2
Q ss_pred hHHHHHHHHhcceEEeCCCC
Q psy12587 274 DAAKISLFKFCHCIIYTPSN 293 (390)
Q Consensus 274 ~~e~~~~~~~adv~v~ps~~ 293 (390)
++.+.++.||++......
T Consensus 66 --~~~e~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 66 --DIEEALKGADVVYTDRWQ 83 (158)
T ss_dssp --SHHHHHTT-SEEEEESSS
T ss_pred --CHHHhcCCCCEEEEcCcc
Confidence 235799999998876543
No 235
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=67.19 E-value=79 Score=26.94 Aligned_cols=119 Identities=13% Similarity=-0.002 Sum_probs=70.5
Q ss_pred eEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-C-cEEEecCC
Q psy12587 195 IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-D-NVLFLTSP 272 (390)
Q Consensus 195 ~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~-~v~~~g~~ 272 (390)
.+|+..|+ |.+..+... . .. . ++.+.+.-.. +.+. .+.++|++ + -|-+.|+.
T Consensus 131 ~i~lttG~----k~l~~f~~~---~-~~-~-----~~~~RvLP~~-----------~~l~-~~~~~G~~~~~iia~~gPf 184 (256)
T TIGR00715 131 RVFLTAGA----SWLSHFSLS---Q-DE-A-----VVFVRVLPYP-----------QALA-QALKLGFPSDRIIAMRGPF 184 (256)
T ss_pred cEEEecCc----chHHHHhhc---c-CC-c-----eEEEEECCCc-----------hhhH-HHHHcCCChhcEEEEeCCC
Confidence 46788887 667766442 1 11 1 2555555221 3333 56677763 2 34556877
Q ss_pred ChHHHHHHHHhcceEEeCCCCC----CCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 273 SDAAKISLFKFCHCIIYTPSNE----HFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 273 ~~~e~~~~~~~adv~v~ps~~e----~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
+.+.=..++++..+-++-+... |+.-++--|+.+|+|||.-+.+..+. ....+. +.+++.+.+.+++
T Consensus 185 s~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~------~~~~~~-~~~el~~~l~~~~ 255 (256)
T TIGR00715 185 SEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIP------GVAIFD-DISQLNQFVARLL 255 (256)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCC------CCccCC-CHHHHHHHHHHhc
Confidence 7766578888766544333322 23346777889999999987665421 112344 7888887777654
No 236
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=66.38 E-value=51 Score=29.72 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHH----------HcCCCCcEEEecCCChHHH
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVK----------KLKLSDNVLFLTSPSDAAK 277 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~----------~~~l~~~v~~~g~~~~~e~ 277 (390)
-+..++++++...+ .+.+.+.++-.. ..+..... ..| .-.+.+++++++++.
T Consensus 196 ~l~~ll~~~~~~~~--------pv~llvp~g~~~---------~~~~~~~~~~~~~~g~~~~~g-~l~l~~lPF~~Q~~y 257 (374)
T PF10093_consen 196 ALASLLDAWAASPK--------PVHLLVPEGRAL---------NSLAAWLGDALLQAGDSWQRG-NLTLHVLPFVPQDDY 257 (374)
T ss_pred HHHHHHHHHhcCCC--------CeEEEecCCccH---------HHHHHHhccccccCccccccC-CeEEEECCCCCHHHH
Confidence 37788888885433 377777665433 44433332 111 235778999999999
Q ss_pred HHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~ 315 (390)
..++-.||+-++-.. =+++=|+-+|+|.|=.-.
T Consensus 258 D~LLw~cD~NfVRGE-----DSfVRAqwAgkPFvWhIY 290 (374)
T PF10093_consen 258 DRLLWACDFNFVRGE-----DSFVRAQWAGKPFVWHIY 290 (374)
T ss_pred HHHHHhCccceEecc-----hHHHHHHHhCCCceEecC
Confidence 999999999776321 267889999999987544
No 237
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=65.55 E-value=85 Score=26.84 Aligned_cols=84 Identities=8% Similarity=0.069 Sum_probs=50.7
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc--CChhHH
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD--NDGNII 353 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~--~~~~~~ 353 (390)
..-+++||+++.-.. .|++=-.+++.. -+.+++....++..+ -.....-++.++ +...+++.|.+.+. +|+ ..
T Consensus 47 ~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~~-~~~~dPH~Wldp~n~~~~a~~I~~~L~~~dP~-~~ 123 (264)
T cd01020 47 AAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHDD-KEGDNPHLWYDPETMSKVANALADALVKADPD-NK 123 (264)
T ss_pred HHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeecccccC-CCCCCCceecCHhHHHHHHHHHHHHHHHhCcc-cH
Confidence 577889998887542 455444555554 345565544333211 011234567777 88888888888776 666 55
Q ss_pred HHHHHHHHHHH
Q psy12587 354 QQFSQFGFNRF 364 (390)
Q Consensus 354 ~~~~~~~~~~~ 364 (390)
....+|+.++.
T Consensus 124 ~~y~~N~~~~~ 134 (264)
T cd01020 124 KYYQANAKKFV 134 (264)
T ss_pred HHHHHHHHHHH
Confidence 56666666655
No 238
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=65.19 E-value=15 Score=27.69 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc----c-eEEeCCCCCCCCccHHhhhh-cCCCEEE---ecCCCc
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC----H-CIIYTPSNEHFGIVPIEAMF-CKRPVIA---VNSGGP 318 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a----d-v~v~ps~~e~~~~~~~Ea~a-~G~pvi~---~~~~~~ 318 (390)
+..+.+++.+.++|+ .+.|...=...++.+.++++ | +++.|.-+...+..+.+|+. .++|+|= |+.-.-
T Consensus 28 ~i~~~l~~~a~~~g~--~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiSNi~aR 105 (140)
T cd00466 28 DIEALLRELAAELGV--EVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHISNIHAR 105 (140)
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecCCcccc
Confidence 444566666666665 36666555566777777665 4 56667666677888999886 6899886 333211
Q ss_pred c-----cceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 319 K-----ESVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 319 ~-----e~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
. .++.+...|.+.-.-.....-++..++
T Consensus 106 E~fR~~S~is~~~~G~I~G~G~~gY~lAl~~~~ 138 (140)
T cd00466 106 EEFRHHSVISPVATGVIAGLGADGYRLALEALA 138 (140)
T ss_pred cccccccccccceeEEEEeCCHHHHHHHHHHHH
Confidence 1 223333345444335666666666554
No 239
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=65.00 E-value=11 Score=29.13 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=27.3
Q ss_pred HHHHHh-cceEEeCCC----CCCCCc--cHHhhhhcCCCEEEecCC
Q psy12587 278 ISLFKF-CHCIIYTPS----NEHFGI--VPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 278 ~~~~~~-adv~v~ps~----~e~~~~--~~~Ea~a~G~pvi~~~~~ 316 (390)
...+.. +|++|+.-. .+|-|+ .+.+|++.|+||++.-..
T Consensus 87 ~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 87 RRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred HHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 334443 999988643 345555 588999999999996543
No 240
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=63.85 E-value=79 Score=25.76 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=63.7
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-CChHHHHHHHH--hcceEEeCCCCCC----CCccHHh
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-PSDAAKISLFK--FCHCIIYTPSNEH----FGIVPIE 302 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~-~~~~e~~~~~~--~adv~v~ps~~e~----~~~~~~E 302 (390)
++++.++.+.+. ....++...+..+ .+...+. -+..+....+. ..|++++-....+ .|..+++
T Consensus 3 ~~~Ilivdd~~~-------~~~~l~~~L~~~~---~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~ 72 (216)
T PRK10840 3 NMNVIIADDHPI-------VLFGIRKSLEQIE---WVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIK 72 (216)
T ss_pred ceEEEEECCcHH-------HHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHH
Confidence 367777776532 2245555555432 2322332 23344445554 3688877543322 4555665
Q ss_pred hhh---cCCCEEE-ecCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 303 AMF---CKRPVIA-VNSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 303 a~a---~G~pvi~-~~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
.+. .++|+|. ++... ....++.|..|++..+ +++++..+|..+.+..
T Consensus 73 ~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~ 127 (216)
T PRK10840 73 YIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGK 127 (216)
T ss_pred HHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCC
Confidence 553 3567776 33322 2344567888999998 9999999999887643
No 241
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=62.98 E-value=58 Score=26.83 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcce
Q psy12587 207 KNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHC 286 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv 286 (390)
.+++..++.+.+..-. -+.++.= .... ..++.++++++|....+.+.+..|-+.+..++...|+
T Consensus 71 ~~p~~~i~~fa~agad-------~It~H~E-~~~~--------~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~ 134 (220)
T COG0036 71 ENPDRYIEAFAKAGAD-------IITFHAE-ATEH--------IHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDL 134 (220)
T ss_pred CCHHHHHHHHHHhCCC-------EEEEEec-cCcC--------HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCE
Confidence 4567777777765432 3555554 2222 2788899999999889999999999999999999999
Q ss_pred EEeCCCCCCCCc
Q psy12587 287 IIYTPSNEHFGI 298 (390)
Q Consensus 287 ~v~ps~~e~~~~ 298 (390)
+++-|..-|||.
T Consensus 135 VllMsVnPGfgG 146 (220)
T COG0036 135 VLLMSVNPGFGG 146 (220)
T ss_pred EEEEeECCCCcc
Confidence 998888777765
No 242
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=62.21 E-value=68 Score=28.31 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCC
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTP 291 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps 291 (390)
..+++.+.+.+++ +......+.++..+.+. +.|++++.+
T Consensus 46 ~~v~~~A~~~~Ip--v~~~~~~~~~~~~~~l~~~~~Dliv~~~ 86 (313)
T TIGR00460 46 PPVKVLAEEKGIP--VFQPEKQRQLEELPLVRELKPDVIVVVS 86 (313)
T ss_pred ChHHHHHHHcCCC--EEecCCCCcHHHHHHHHhhCCCEEEEcc
Confidence 3466667766653 22233333323333332 455555443
No 243
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=61.13 E-value=1e+02 Score=26.35 Aligned_cols=109 Identities=11% Similarity=0.094 Sum_probs=66.5
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHH
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELA 212 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~l 212 (390)
-++.|.--+-+++..+.+++ ....+.|+.++.+..... +..++--.|+| ..||..-+
T Consensus 5 SRRTDIPAfY~~Wf~nRl~~--------G~v~vrNPfn~~qvsrv~----------l~p~~Vd~iVF-----WTKnp~P~ 61 (266)
T PF08902_consen 5 SRRTDIPAFYSDWFMNRLRE--------GYVLVRNPFNPHQVSRVS----------LSPEDVDCIVF-----WTKNPAPF 61 (266)
T ss_pred CcCCCcccchHHHHHHHhhC--------CEEEeECCCCCCceEEEE----------cChhcceEEEE-----ecCCcHHH
Confidence 34667777777777776655 356678888766544322 11112223333 23899999
Q ss_pred HHHHHHHHhhcccccccceEEEEEcCCCCC---CcchhHHHHHHHHHHHHcCCCCcEEE
Q psy12587 213 IYSLNSLRSRLSDEMKTHVKLVVAGGYDPH---NIENVEYYKELGVLVKKLKLSDNVLF 268 (390)
Q Consensus 213 l~a~~~l~~~~~~~~~~~~~l~i~G~~~~~---~~~~~~y~~~~~~~~~~~~l~~~v~~ 268 (390)
++.+..+.+.+-. .-+++.|-|-+..- .+.-.+-.+.++++.+.+| +++|.|
T Consensus 62 l~~L~~l~~~gy~---~yfq~Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~iG-~~rViW 116 (266)
T PF08902_consen 62 LPYLDELDERGYP---YYFQFTITGYGKDLEPNVPPKDERIETFRELSERIG-PERVIW 116 (266)
T ss_pred HhhHHHHHhCCCc---eEEEEEeCCCCccccCCCCCHHHHHHHHHHHHHHHC-CCcEEE
Confidence 9999999874321 13566776644332 2233455577888888888 567766
No 244
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=59.96 E-value=1.3e+02 Score=27.11 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCc------chhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHH
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNI------ENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLF 281 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~------~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~ 281 (390)
.-+.+++.++.+++.+ +.+...|...+++. ...+-...+.+.+++.|++ .+....+..++..+.
T Consensus 130 ~~~~~~~~A~~lk~~g-------~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~---~~t~v~d~~~~~~l~ 199 (360)
T PRK12595 130 SYEQVEAVAKALKAKG-------LKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLA---VISEIVNPADVEVAL 199 (360)
T ss_pred CHHHHHHHHHHHHHcC-------CcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCC---EEEeeCCHHHHHHHH
Confidence 4567788888887653 55666664443322 1224457888889998874 222333444444444
Q ss_pred HhcceEEeCCCCCCCCccHHhhhh-cCCCEEEecC
Q psy12587 282 KFCHCIIYTPSNEHFGIVPIEAMF-CKRPVIAVNS 315 (390)
Q Consensus 282 ~~adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~ 315 (390)
..+|++-.+|.. .....++++++ .|+||+.+..
T Consensus 200 ~~vd~lkI~s~~-~~n~~LL~~~a~~gkPVilk~G 233 (360)
T PRK12595 200 DYVDVIQIGARN-MQNFELLKAAGRVNKPVLLKRG 233 (360)
T ss_pred HhCCeEEECccc-ccCHHHHHHHHccCCcEEEeCC
Confidence 559999888752 23345666555 7999999774
No 245
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=59.85 E-value=81 Score=25.81 Aligned_cols=82 Identities=11% Similarity=0.063 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec--CCChHHHHHHHHhcceEEeCCC--------CCCCC--c
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT--SPSDAAKISLFKFCHCIIYTPS--------NEHFG--I 298 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g--~~~~~e~~~~~~~adv~v~ps~--------~e~~~--~ 298 (390)
.++.++...... ...|.+.+.+..+++|... +.+.- ..+.+++.+.+..||+++++.- +...+ -
T Consensus 30 ~~i~~iptA~~~---~~~~~~~~~~~~~~lG~~~-~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~ 105 (210)
T cd03129 30 ARVLFIPTASGD---RDEYGEEYRAAFERLGVEV-VHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLD 105 (210)
T ss_pred CeEEEEeCCCCC---hHHHHHHHHHHHHHcCCce-EEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHH
Confidence 566666655432 2356677888888888643 32221 1355778899999999988631 12222 2
Q ss_pred cHHhhhhcCCCEEEecCC
Q psy12587 299 VPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 299 ~~~Ea~a~G~pvi~~~~~ 316 (390)
.+.+....|+|++.+..|
T Consensus 106 ~i~~~~~~G~v~~G~SAG 123 (210)
T cd03129 106 AILKRVARGVVIGGTSAG 123 (210)
T ss_pred HHHHHHHcCCeEEEcCHH
Confidence 467777789999887654
No 246
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=59.67 E-value=23 Score=31.14 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=50.8
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEE
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVI 311 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi 311 (390)
-=+++|.-... ......+.+++++++.|....+...|.++.+.+..+ ..|++|..+-.+ +++.+.-.+-+|||
T Consensus 215 vGIlvgTl~~q--~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf--~iD~fV~~aCPr---~sidd~~~f~kPvl 287 (308)
T TIGR03682 215 FGILVSTKKGQ--RRPELAEELKKLLEELGKEALLILLDNISPDQLRNL--DFDAYVNTACPR---IAIDDYARFKKPVL 287 (308)
T ss_pred EEEEEEccCcC--CCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcC--CcCEEEEccCCC---cccccHhhCCCccc
Confidence 34455643332 123445778888999998777788999999987665 599999865321 34556666677777
Q ss_pred Eec
Q psy12587 312 AVN 314 (390)
Q Consensus 312 ~~~ 314 (390)
++-
T Consensus 288 TP~ 290 (308)
T TIGR03682 288 TPQ 290 (308)
T ss_pred CHH
Confidence 654
No 247
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=59.05 E-value=1.5e+02 Score=27.41 Aligned_cols=94 Identities=10% Similarity=0.020 Sum_probs=52.6
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCE
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPV 310 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pv 310 (390)
-.+.++.... +..+.++++++- .. .++.+++.+.+..+|+++..+.... ++.-. .+.-+.|.
T Consensus 206 ~~I~V~nRt~----------~ra~~La~~~~~---~~---~~~~~~l~~~l~~aDiVI~aT~a~~-~vi~~-~~~~~~~~ 267 (414)
T PRK13940 206 KQIMLANRTI----------EKAQKITSAFRN---AS---AHYLSELPQLIKKADIIIAAVNVLE-YIVTC-KYVGDKPR 267 (414)
T ss_pred CEEEEECCCH----------HHHHHHHHHhcC---Ce---EecHHHHHHHhccCCEEEECcCCCC-eeECH-HHhCCCCe
Confidence 3677877653 445666666531 11 2344667889999999998654322 22222 33457898
Q ss_pred EEecCCCcccceec--CcceeeecCCHHHHHHHHH
Q psy12587 311 IAVNSGGPKESVVD--GRTGFLCESNEEAFAKAMK 343 (390)
Q Consensus 311 i~~~~~~~~e~i~~--~~~g~~~~~~~~~l~~~i~ 343 (390)
+.-|.+-.+++-.. .-.|+.+- |.+++.+.+.
T Consensus 268 ~~iDLavPRdidp~v~~l~~v~l~-~iDdl~~i~~ 301 (414)
T PRK13940 268 VFIDISIPQALDPKLGELEQNVYY-CVDDINAVIE 301 (414)
T ss_pred EEEEeCCCCCCCccccCcCCeEEE-eHHHHHHHHH
Confidence 88887655554321 11243333 5555555444
No 248
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=58.54 E-value=1e+02 Score=25.39 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=49.7
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC-----ChHHHHHHHHhcceEEeCCC--------CCCCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP-----SDAAKISLFKFCHCIIYTPS--------NEHFG 297 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~-----~~~e~~~~~~~adv~v~ps~--------~e~~~ 297 (390)
.++.++...... ...+.+++.+..+++|.. .+.++-.- ++.++.+.+..||++++..- +...+
T Consensus 30 ~~i~~iptA~~~---~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~ 105 (217)
T cd03145 30 ARIVVIPAASEE---PAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTP 105 (217)
T ss_pred CcEEEEeCCCcC---hhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCCh
Confidence 445555443321 235567777777888864 34443322 45677889999998887521 22223
Q ss_pred c--cHHhhhhcCCCEEEecCC
Q psy12587 298 I--VPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 298 ~--~~~Ea~a~G~pvi~~~~~ 316 (390)
+ .+-++...|+|++.+..|
T Consensus 106 l~~~l~~~~~~G~v~~G~SAG 126 (217)
T cd03145 106 LLDALRKVYRGGVVIGGTSAG 126 (217)
T ss_pred HHHHHHHHHHcCCEEEEccHH
Confidence 2 456677789998887654
No 249
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=58.16 E-value=1e+02 Score=25.07 Aligned_cols=106 Identities=15% Similarity=0.201 Sum_probs=52.6
Q ss_pred EEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChH
Q psy12587 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDA 275 (390)
Q Consensus 196 ~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~ 275 (390)
.|+-.|++ |...+++.+..-+.... ++.+.++|+|..-.++..+ ....+..++.. ++-|.+.+
T Consensus 6 g~ik~Gni----Gts~v~dlllDErAdRe-----di~vrVvgsgaKM~Pe~ve--aav~~~~e~~~-pDfvi~is----- 68 (277)
T COG1927 6 GFIKCGNI----GTSPVVDLLLDERADRE-----DIEVRVVGSGAKMDPECVE--AAVTEMLEEFN-PDFVIYIS----- 68 (277)
T ss_pred EEEEeccc----chHHHHHHHHHhhcccC-----CceEEEeccccccChHHHH--HHHHHHHHhcC-CCEEEEeC-----
Confidence 44555665 44555555554444444 4999999998765332100 11222222221 12232222
Q ss_pred HHHHHHHhcceEEeCCCCCCCCccHHhhhh-cCCCEEE-ecCCCc--ccceecCcceeeec
Q psy12587 276 AKISLFKFCHCIIYTPSNEHFGIVPIEAMF-CKRPVIA-VNSGGP--KESVVDGRTGFLCE 332 (390)
Q Consensus 276 e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~-~~~~~~--~e~i~~~~~g~~~~ 332 (390)
|.-.-+.|.+.-|.++ .|+|+|. +|.++. .+-+++...|+++-
T Consensus 69 --------------PNpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYIiv 115 (277)
T COG1927 69 --------------PNPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYIIV 115 (277)
T ss_pred --------------CCCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEEEe
Confidence 2223344556667666 5777655 454443 34445555666654
No 250
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=57.54 E-value=25 Score=24.82 Aligned_cols=75 Identities=9% Similarity=-0.012 Sum_probs=46.7
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCc-cHH-hhhhcCCCE
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGI-VPI-EAMFCKRPV 310 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~-~~~-Ea~a~G~pv 310 (390)
++++|+|-.. .-..+++++.+++.|++ +.+. ..+..++.+.+..+|+++..+... +-. .+- .+-..|+||
T Consensus 4 ll~C~~GaSS----s~la~km~~~a~~~gi~--~~i~-a~~~~e~~~~~~~~Dvill~PQv~-~~~~~i~~~~~~~~ipv 75 (99)
T cd05565 4 LVLCAGGGTS----GLLANALNKGAKERGVP--LEAA-AGAYGSHYDMIPDYDLVILAPQMA-SYYDELKKDTDRLGIKL 75 (99)
T ss_pred EEECCCCCCH----HHHHHHHHHHHHHCCCc--EEEE-EeeHHHHHHhccCCCEEEEcChHH-HHHHHHHHHhhhcCCCE
Confidence 4566666432 23447889999998885 4433 456677788999999888754311 111 122 234568899
Q ss_pred EEecC
Q psy12587 311 IAVNS 315 (390)
Q Consensus 311 i~~~~ 315 (390)
..-+.
T Consensus 76 ~~I~~ 80 (99)
T cd05565 76 VTTTG 80 (99)
T ss_pred EEeCH
Confidence 88764
No 251
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=57.05 E-value=77 Score=27.89 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeC
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYT 290 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~p 290 (390)
..+++.+++.+++ +.-...+.+.++.+.+. +.|++++.
T Consensus 46 ~~v~~~a~~~~Ip--~~~~~~~~~~~~~~~l~~~~~Dliv~~ 85 (309)
T PRK00005 46 SPVKQLALEHGIP--VLQPEKLRDPEFLAELAALNADVIVVV 85 (309)
T ss_pred CHHHHHHHHcCCC--EECcCCCCCHHHHHHHHhcCcCEEEEe
Confidence 3466666666653 22222333444434333 34555443
No 252
>PRK13761 hypothetical protein; Provisional
Probab=56.87 E-value=1.1e+02 Score=25.24 Aligned_cols=95 Identities=9% Similarity=0.106 Sum_probs=53.6
Q ss_pred HHhcceEEeCCCCCCCCccHHhhhh-cCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHH
Q psy12587 281 FKFCHCIIYTPSNEHFGIVPIEAMF-CKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQF 359 (390)
Q Consensus 281 ~~~adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 359 (390)
+-.||+++.|-.. | ==.||+. +|+-||+-|...++..-+.. +--++ +.+..++-.+...-. ..+.+.+.
T Consensus 148 Iy~ADVVLVPLED-G---DR~EaL~~mGK~VI~IDLNPLSRTar~A-~itIV----Dni~RA~p~m~~~~~-elk~~~~~ 217 (248)
T PRK13761 148 IYSADVVLVPLED-G---DRTEALVKMGKTVIAIDLNPLSRTARTA-TITIV----DNITRAVPNMTEYAR-ELKKKDRE 217 (248)
T ss_pred ceeccEEEecCCC-C---cHHHHHHHcCCeEEEEeCCCcccccccC-ceeee----hhHHHHHHHHHHHHH-HHhcCCHH
Confidence 4568998887542 1 1245554 89999999988776644322 22223 344555444443333 23333333
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHhhh
Q psy12587 360 GFNRFNEKFSFQAFSIQLNTIVNNML 385 (390)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
..+.+.+.|+-+.....-++.+.+-+
T Consensus 218 el~~iv~~~dN~~~L~~al~~I~~rl 243 (248)
T PRK13761 218 ELEEIVENYDNKKNLSEALKEIRERL 243 (248)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 44444578888777766666665443
No 253
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=56.59 E-value=1e+02 Score=25.74 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=23.0
Q ss_pred hcceEE-eCCCCCCCCccHHhhhhcCCCEEEecCC
Q psy12587 283 FCHCII-YTPSNEHFGIVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 283 ~adv~v-~ps~~e~~~~~~~Ea~a~G~pvi~~~~~ 316 (390)
..|.++ .|...+...-.+-++...|+|||..+..
T Consensus 55 ~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 55 GVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred cCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 356544 4444444555567788899999998876
No 254
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=56.06 E-value=1.3e+02 Score=25.59 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC 284 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a 284 (390)
.++.++++++..++.+-+ +.+.+...... ..+.++..++-+.+.++|. +.|.+ .|..++.++.++++..
T Consensus 113 ~~~~~~~~i~~a~~~G~~-----v~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~v~~li~~l 184 (265)
T cd03174 113 DLENAEEAIEAAKEAGLE-----VEGSLEDAFGC--KTDPEYVLEVAKALEEAGA-DEISLKDTVGLATPEEVAELVKAL 184 (265)
T ss_pred HHHHHHHHHHHHHHCCCe-----EEEEEEeecCC--CCCHHHHHHHHHHHHHcCC-CEEEechhcCCcCHHHHHHHHHHH
Confidence 467777888888777553 55555322210 1234666777777778874 56655 5777777776666552
Q ss_pred -------ceEEeCCCCCCCCc---cHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHH
Q psy12587 285 -------HCIIYTPSNEHFGI---VPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKI 345 (390)
Q Consensus 285 -------dv~v~ps~~e~~~~---~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l 345 (390)
.+.++. ....|+ ..++|+.+|.-.|-+..+|+.+-. |-. +.++++..+...
T Consensus 185 ~~~~~~~~~~~H~--Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~-----Gn~---~~e~~~~~l~~~ 245 (265)
T cd03174 185 REALPDVPLGLHT--HNTLGLAVANSLAALEAGADRVDGSVNGLGERA-----GNA---ATEDLVAALEGL 245 (265)
T ss_pred HHhCCCCeEEEEe--CCCCChHHHHHHHHHHcCCCEEEeccccccccc-----cCc---cHHHHHHHHHhc
Confidence 233332 344454 368999999999988888888532 211 678888877765
No 255
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=54.95 E-value=42 Score=25.38 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc----c-eEEeCCCCCCCCccHHhhhh-cCCCEEEe
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC----H-CIIYTPSNEHFGIVPIEAMF-CKRPVIAV 313 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a----d-v~v~ps~~e~~~~~~~Ea~a-~G~pvi~~ 313 (390)
+..+.+++.+.++|+ .+.|...=...++.+.+.++ | +++.|.-+...+..+.+|+. .++|+|=-
T Consensus 29 ~i~~~~~~~a~~~g~--~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vEV 98 (140)
T PF01220_consen 29 DIEQKCKETAAELGV--EVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVEV 98 (140)
T ss_dssp HHHHHHHHHHHHTTE--EEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEEE
T ss_pred HHHHHHHHHHHHCCC--eEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEEE
Confidence 344566667777664 36666555566777777665 4 56667767777889999886 68998873
No 256
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=54.88 E-value=29 Score=27.08 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=45.3
Q ss_pred HHHHHHHhcceEEeCCC--CC----CCCccHHhhhhcCCCEEEecCC----CcccceecCcceee-ecC-CHHHHHHHHH
Q psy12587 276 AKISLFKFCHCIIYTPS--NE----HFGIVPIEAMFCKRPVIAVNSG----GPKESVVDGRTGFL-CES-NEEAFAKAMK 343 (390)
Q Consensus 276 e~~~~~~~adv~v~ps~--~e----~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~~~~~g~~-~~~-~~~~l~~~i~ 343 (390)
.+...+..||+++.--. .| .|.-.+=|.|-+++|+|++--- ..-+-+.....-++ +++ |-+.+...|.
T Consensus 93 al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~Il 172 (179)
T COG1618 93 ALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEIL 172 (179)
T ss_pred HHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHHH
Confidence 45667778999987422 23 2334567889999999996431 12222333333344 566 7778888887
Q ss_pred HHhcC
Q psy12587 344 KIVDN 348 (390)
Q Consensus 344 ~l~~~ 348 (390)
.++..
T Consensus 173 ~~L~~ 177 (179)
T COG1618 173 SVLKG 177 (179)
T ss_pred HHhcc
Confidence 77654
No 257
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=54.84 E-value=1.1e+02 Score=24.40 Aligned_cols=39 Identities=8% Similarity=0.090 Sum_probs=19.6
Q ss_pred eEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCC
Q psy12587 195 IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGY 239 (390)
Q Consensus 195 ~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~ 239 (390)
.++.|+|+-...-. +.++..++++++.+-. +.++.+|..
T Consensus 109 riVaFvgSpi~ese-deLirlak~lkknnVA-----idii~fGE~ 147 (243)
T COG5148 109 RIVAFVGSPIQESE-DELIRLAKQLKKNNVA-----IDIIFFGEA 147 (243)
T ss_pred EEEEEecCcccccH-HHHHHHHHHHHhcCee-----EEEEehhhh
Confidence 34555665433222 6666666666655442 444555533
No 258
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=54.08 E-value=76 Score=25.91 Aligned_cols=145 Identities=10% Similarity=0.034 Sum_probs=77.0
Q ss_pred cCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcE--EEe-cCCChHHHHHHHH
Q psy12587 206 KKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNV--LFL-TSPSDAAKISLFK 282 (390)
Q Consensus 206 ~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v--~~~-g~~~~~e~~~~~~ 282 (390)
.|-...+..|+.-+....+ -.+.++|..+. ....+++.+...|-. .| .|+ |.+++..+.. +.
T Consensus 49 ~kT~~~L~~A~~~i~~~~~------~~ILfVgTk~~-------~~~~v~k~A~~~g~~-~v~~RWlgG~LTN~~~~~-~~ 113 (204)
T PRK04020 49 RKTDERIRIAAKFLSRYEP------EKILVVSSRQY-------GQKPVQKFAEVVGAK-AITGRFIPGTLTNPSLKG-YI 113 (204)
T ss_pred HHHHHHHHHHHHHHHHhcC------CeEEEEeCCHH-------HHHHHHHHHHHhCCe-eecCccCCCcCcCcchhc-cC
Confidence 3445556666665555433 46778887642 235667777666532 22 344 4456554322 33
Q ss_pred hcceEEeCCCCCCCCccHHhhhhcCCCEEE-ecCCCcccceecCcceeeecC--CHHHHHHHHHHHhcCChhHHHHHHHH
Q psy12587 283 FCHCIIYTPSNEHFGIVPIEAMFCKRPVIA-VNSGGPKESVVDGRTGFLCES--NEEAFAKAMKKIVDNDGNIIQQFSQF 359 (390)
Q Consensus 283 ~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~-~~~~~~~e~i~~~~~g~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~~ 359 (390)
.-|++++... ..-..++.||...|.|+|+ .|....++.+ .+.+|. |.-.-...+..++.+.- ..
T Consensus 114 ~Pdliiv~dp-~~~~~AI~EA~kl~IP~IaivDTn~dp~~V-----dypIP~Ndds~~SI~li~~ll~~aI-------l~ 180 (204)
T PRK04020 114 EPDVVVVTDP-RGDAQAVKEAIEVGIPVVALCDTDNLTSNV-----DLVIPTNNKGRKALALVYWLLAREI-------LR 180 (204)
T ss_pred CCCEEEEECC-cccHHHHHHHHHhCCCEEEEEeCCCCcccC-----ceeECCCCchHHHHHHHHHHHHHHH-------HH
Confidence 4555544322 1225689999999999999 4544445544 233443 44444445555544322 12
Q ss_pred HHHHHhhhcCHHHHHHHHH
Q psy12587 360 GFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~ 378 (390)
++..+.+.-.|+...+.+.
T Consensus 181 ~kg~~~~~~~~~v~~~~f~ 199 (204)
T PRK04020 181 ERGEIKPDEDLPVPVEDFE 199 (204)
T ss_pred hhCccCCCCCCCcCHHHHh
Confidence 2333445556666555544
No 259
>KOG2264|consensus
Probab=53.82 E-value=88 Score=29.64 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=67.8
Q ss_pred EEEecCCChHHHHHHHHhcceE-EeCCC-----CCCCCccHHhhhhcC-CCEEEecC--CCcccceecCcceeeecC-CH
Q psy12587 266 VLFLTSPSDAAKISLFKFCHCI-IYTPS-----NEHFGIVPIEAMFCK-RPVIAVNS--GGPKESVVDGRTGFLCES-NE 335 (390)
Q Consensus 266 v~~~g~~~~~e~~~~~~~adv~-v~ps~-----~e~~~~~~~Ea~a~G-~pvi~~~~--~~~~e~i~~~~~g~~~~~-~~ 335 (390)
..+.|.-+ .-.++++.+... ++|.. .+++-.-++||+..| +|||.++. -...++++-....+.++. ..
T Consensus 401 walcg~~~--~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~ 478 (907)
T KOG2264|consen 401 WALCGERE--RRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARL 478 (907)
T ss_pred hhhccchH--HHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCcccc
Confidence 33456443 337889888864 44432 234445689999999 67887764 456677766667777765 33
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcC-HHHHHHHHHHHHHh
Q psy12587 336 EAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFS-FQAFSIQLNTIVNN 383 (390)
Q Consensus 336 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 383 (390)
.+. .-+.+.+++.+ .-.|++.++-..+..++ ....++..+..++.
T Consensus 479 tE~-HFllrs~~dsD--ll~mRRqGRl~wEtYls~~~~~~~tvlA~lR~ 524 (907)
T KOG2264|consen 479 TEA-HFLLRSFEDSD--LLEMRRQGRLFWETYLSDRHLLARTVLAALRY 524 (907)
T ss_pred chH-HHHHHhcchhh--HHHHHhhhhhhHHHHhhHHHHHHHHHHHHHHH
Confidence 333 33445555554 56677777777654444 33455555555543
No 260
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=53.54 E-value=91 Score=23.16 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceec--Ccce
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD--GRTG 328 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~--~~~g 328 (390)
++..+.+++ +. .|.+....+.+++.+.++.+|+++..+.. .+.-.+++++ -++.+|++...|...+--+ ...|
T Consensus 9 ~~~~~~l~~-~~--~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a~~~g 83 (133)
T PF00389_consen 9 DEEIERLEE-GF--EVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGVDNIDLEAAKERG 83 (133)
T ss_dssp HHHHHHHHH-TS--EEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSCTTB-HHHHHHTT
T ss_pred HHHHHHHHC-Cc--eEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEcccccCcccHHHHhhCe
Confidence 445555555 43 58888888999999999999999974432 3556678777 8899999888777543211 2245
Q ss_pred eeec---C-CHHHHHHHH
Q psy12587 329 FLCE---S-NEEAFAKAM 342 (390)
Q Consensus 329 ~~~~---~-~~~~l~~~i 342 (390)
+.+. . +.++.|+..
T Consensus 84 I~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 84 IPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp SEEEE-TTTTHHHHHHHH
T ss_pred EEEEEeCCcCCcchhccc
Confidence 5543 3 556666655
No 261
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=53.36 E-value=1.4e+02 Score=25.44 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=69.2
Q ss_pred ccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-CChHHHHHHHHh
Q psy12587 205 RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-PSDAAKISLFKF 283 (390)
Q Consensus 205 ~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~-~~~~e~~~~~~~ 283 (390)
...|++.+++.+++. .+.=+|+-+-+.. ..+++.+.+++.|+ +.|.+..+ .+++.+..+.+.
T Consensus 100 ~~~G~e~F~~~~~~a----------GvdGlIipDLP~e------e~~~~~~~~~~~gl-~~I~lv~p~t~~~Ri~~i~~~ 162 (259)
T PF00290_consen 100 FQYGIERFFKEAKEA----------GVDGLIIPDLPPE------ESEELREAAKKHGL-DLIPLVAPTTPEERIKKIAKQ 162 (259)
T ss_dssp HHH-HHHHHHHHHHH----------TEEEEEETTSBGG------GHHHHHHHHHHTT--EEEEEEETTS-HHHHHHHHHH
T ss_pred hccchHHHHHHHHHc----------CCCEEEEcCCChH------HHHHHHHHHHHcCC-eEEEEECCCCCHHHHHHHHHh
Confidence 356888887777765 2556666666542 23788888999998 56777666 677777888888
Q ss_pred cceEEeC-CCCCCCC------ccHHhhh-----hcCCCEEEec-C---CCcccceecCcceeeecCCHHHHHHHHHH
Q psy12587 284 CHCIIYT-PSNEHFG------IVPIEAM-----FCKRPVIAVN-S---GGPKESVVDGRTGFLCESNEEAFAKAMKK 344 (390)
Q Consensus 284 adv~v~p-s~~e~~~------~~~~Ea~-----a~G~pvi~~~-~---~~~~e~i~~~~~g~~~~~~~~~l~~~i~~ 344 (390)
++-|+.. |.....| ..+-+.+ .+.+|+++-= . .....+. .+..|.++- ..+.+.+.+
T Consensus 163 a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVG---Sa~v~~i~~ 235 (259)
T PF00290_consen 163 ASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVG---SAFVKIIEE 235 (259)
T ss_dssp -SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEES---HHHHHHHHH
T ss_pred CCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEEC---HHHHHHHHH
Confidence 8866663 4422222 1122221 2378888732 1 1223333 666788886 466666665
No 262
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=52.06 E-value=1.4e+02 Score=24.86 Aligned_cols=134 Identities=10% Similarity=0.005 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEE
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCII 288 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v 288 (390)
=.....-+..|.+. ...++++...-. ++++.+++. +.+.+... +.+ ...+..+++++
T Consensus 34 G~VA~RK~~~Ll~~-------gA~VtVVap~i~---------~el~~l~~~----~~i~~~~r-~~~--~~dl~g~~LVi 90 (223)
T PRK05562 34 GKAAFIKGKTFLKK-------GCYVYILSKKFS---------KEFLDLKKY----GNLKLIKG-NYD--KEFIKDKHLIV 90 (223)
T ss_pred CHHHHHHHHHHHhC-------CCEEEEEcCCCC---------HHHHHHHhC----CCEEEEeC-CCC--hHHhCCCcEEE
Confidence 36777777777775 367878775543 677766553 45666543 222 24567888777
Q ss_pred eCCCCCCCCccH-HhhhhcCCCEEEecCCCcccce-----ecCcceeeec-----C-CHHHHHHHHHHHhcCChhHHHHH
Q psy12587 289 YTPSNEHFGIVP-IEAMFCKRPVIAVNSGGPKESV-----VDGRTGFLCE-----S-NEEAFAKAMKKIVDNDGNIIQQF 356 (390)
Q Consensus 289 ~ps~~e~~~~~~-~Ea~a~G~pvi~~~~~~~~e~i-----~~~~~g~~~~-----~-~~~~l~~~i~~l~~~~~~~~~~~ 356 (390)
..+..+...-.+ -+|-+.|.+|.+.+.+...+++ ..+.--+-+. | -...+.+.|++++.+.. ...+.
T Consensus 91 aATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~~~-~l~~~ 169 (223)
T PRK05562 91 IATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKKYD-DFIEY 169 (223)
T ss_pred ECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 765544444433 4556779999887765554443 3333222232 2 23456666666664333 33444
Q ss_pred HHHHHHHHhh
Q psy12587 357 SQFGFNRFNE 366 (390)
Q Consensus 357 ~~~~~~~~~~ 366 (390)
....|+.+.+
T Consensus 170 l~~~R~~vk~ 179 (223)
T PRK05562 170 VTKIRNKAKK 179 (223)
T ss_pred HHHHHHHHHh
Confidence 4445555433
No 263
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=51.83 E-value=31 Score=25.83 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=18.7
Q ss_pred EEEecCCChHHHHHHHHhcceEEeC
Q psy12587 266 VLFLTSPSDAAKISLFKFCHCIIYT 290 (390)
Q Consensus 266 v~~~g~~~~~e~~~~~~~adv~v~p 290 (390)
+=+.|........+++.+||+++.-
T Consensus 60 ~G~~g~~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 60 LGYLGLFGSPAANEALEQADLVLAI 84 (137)
T ss_dssp EEESCGGSCHHHHHHHHHSSEEEEE
T ss_pred cccCCccCCHHHHHHhcCCCEEEEE
Confidence 3345555677778999999998874
No 264
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=51.65 E-value=95 Score=26.15 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=42.6
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC----------CcEEEecCCChHHHHHHHH-----hcceEEeC-CCCCC
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLS----------DNVLFLTSPSDAAKISLFK-----FCHCIIYT-PSNEH 295 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~----------~~v~~~g~~~~~e~~~~~~-----~adv~v~p-s~~e~ 295 (390)
++-++..... +..+.+.+..++.|++ ++.. .+.++.+.+.+... .+|.++.+ ...-+
T Consensus 122 RIalvTPY~~------~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~-ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt 194 (239)
T TIGR02990 122 RISLLTPYTP------ETSRPMAQYFAVRGFEIVNFTCLGLTDDRE-MARISPDCIVEAALAAFDPDADALFLSCTALRA 194 (239)
T ss_pred EEEEECCCcH------HHHHHHHHHHHhCCcEEeeeeccCCCCCce-eeecCHHHHHHHHHHhcCCCCCEEEEeCCCchh
Confidence 5666665443 2235555556655542 2222 45577777777776 36655543 22222
Q ss_pred CCc-cHHhhhhcCCCEEEecCCCc
Q psy12587 296 FGI-VPIEAMFCKRPVIAVNSGGP 318 (390)
Q Consensus 296 ~~~-~~~Ea~a~G~pvi~~~~~~~ 318 (390)
... .-+|.. .|+|||+|+....
T Consensus 195 ~~vi~~lE~~-lGkPVlsSNqat~ 217 (239)
T TIGR02990 195 ATCAQRIEQA-IGKPVVTSNQATA 217 (239)
T ss_pred HHHHHHHHHH-HCCCEEEHHHHHH
Confidence 221 124444 7999999986443
No 265
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.61 E-value=1.7e+02 Score=25.64 Aligned_cols=62 Identities=19% Similarity=0.058 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh-cceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF-CHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~-adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+++-..-.+....+ +.|.-.+++..+.+++.+ +|.+..|+...-.+-- -+--..-||+|++-
T Consensus 58 kely~~G~~ti~se-vCfPaki~HGHi~~L~~K~~d~IFyP~l~~~~~E~-~a~n~~~CP~V~~~ 120 (351)
T COG3580 58 KELYEKGIETIPSE-VCFPAKISHGHIMDLIKKGIDYIFYPCLRYIKSEQ-SANNHYNCPIVQSY 120 (351)
T ss_pred HHHHHhhhhhCCcc-ceeceeechhHHHHHHHcCCCeEEecccccccccc-cccccccCccccCc
Confidence 55554444444344 878777888888999998 9999999864333322 22234568888854
No 266
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=51.25 E-value=1.4e+02 Score=24.55 Aligned_cols=92 Identities=12% Similarity=-0.041 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCCcEEEecCC--ChHHHHHHHHhcceEEeCCCCC---CC---CccHHhh-hhcCCCEEEecC------
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSP--SDAAKISLFKFCHCIIYTPSNE---HF---GIVPIEA-MFCKRPVIAVNS------ 315 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~--~~~e~~~~~~~adv~v~ps~~e---~~---~~~~~Ea-~a~G~pvi~~~~------ 315 (390)
+++.+..++++. +-+...|+. =..++.+.+..--+-++||..- |. |..+.++ +..|........
T Consensus 68 ~~~~~~l~~~~~-Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tvh~v~~~ 146 (207)
T PLN02331 68 DELVDALRGAGV-DFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDEH 146 (207)
T ss_pred HHHHHHHHhcCC-CEEEEeCcchhCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHHHHHcCCCeEEEEEEEECCC
Confidence 445555555543 445554542 2233344444444567777633 32 2455555 457777544222
Q ss_pred CCcccceecCcceeeec-C-CHHHHHHHHHHH
Q psy12587 316 GGPKESVVDGRTGFLCE-S-NEEAFAKAMKKI 345 (390)
Q Consensus 316 ~~~~e~i~~~~~g~~~~-~-~~~~l~~~i~~l 345 (390)
-...+++.... +-+. . +.+++.+.+..+
T Consensus 147 ~D~G~Ii~Q~~--~~I~~~dt~~~L~~r~~~~ 176 (207)
T PLN02331 147 YDTGRILAQRV--VPVLATDTPEELAARVLHE 176 (207)
T ss_pred CCCCCeEEEEE--EecCCCCCHHHHHHHHHHH
Confidence 12233442221 2232 2 667776666553
No 267
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=50.90 E-value=1.6e+02 Score=25.20 Aligned_cols=102 Identities=10% Similarity=0.038 Sum_probs=57.0
Q ss_pred ccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCc------chhHHHHHHHHHHHHcCCCCcEEEecCCChHH
Q psy12587 203 YERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNI------ENVEYYKELGVLVKKLKLSDNVLFLTSPSDAA 276 (390)
Q Consensus 203 ~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~------~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e 276 (390)
...-...+.+++.++.+++... ++...+-..+++. .+.+-.+.+++.++++|++= +....+..+
T Consensus 32 pc~ie~~~~~~~~A~~lk~~~~-------k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~---~t~~~d~~~ 101 (260)
T TIGR01361 32 PCSVESEEQIMETARFVKEAGA-------KILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPV---VTEVMDPRD 101 (260)
T ss_pred CCccCCHHHHHHHHHHHHHHHH-------HhccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCE---EEeeCChhh
Confidence 3444467778888888776532 2222110001100 12233467888899988742 222333344
Q ss_pred HHHHHHhcceEEeCCCCCCCCccHHhhhh-cCCCEEEecC
Q psy12587 277 KISLFKFCHCIIYTPSNEHFGIVPIEAMF-CKRPVIAVNS 315 (390)
Q Consensus 277 ~~~~~~~adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~ 315 (390)
+..+...+|++-.+|. +.....++++++ .|+||+.+..
T Consensus 102 ~~~l~~~~d~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 102 VEIVAEYADILQIGAR-NMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred HHHHHhhCCEEEECcc-cccCHHHHHHHhcCCCcEEEeCC
Confidence 4444455888888875 333344666555 7999999774
No 268
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=50.86 E-value=84 Score=27.13 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=14.3
Q ss_pred HHHHHH--hcceEEeCCC-CCCCCccHHhhhh
Q psy12587 277 KISLFK--FCHCIIYTPS-NEHFGIVPIEAMF 305 (390)
Q Consensus 277 ~~~~~~--~adv~v~ps~-~e~~~~~~~Ea~a 305 (390)
+.+.++ .+|++|-.|. ...|.--+++.|+
T Consensus 97 L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma 128 (279)
T cd05312 97 LLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMA 128 (279)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHH
Confidence 345555 5566665553 2233334455554
No 269
>PLN02929 NADH kinase
Probab=50.56 E-value=49 Score=28.88 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=43.2
Q ss_pred HHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCc---------ccceecCcceeeecCCHHHHHHHHHHHhcCC
Q psy12587 279 SLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGP---------KESVVDGRTGFLCESNEEAFAKAMKKIVDND 349 (390)
Q Consensus 279 ~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~---------~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~ 349 (390)
.....+|+++.-. .+|.=+...-.+..++||+.-+.|.. .++-..+..|+++..+++++.+.+.++++..
T Consensus 60 ~~~~~~Dlvi~lG-GDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 60 QPIRDVDLVVAVG-GDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGR 138 (301)
T ss_pred cccCCCCEEEEEC-CcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCC
Confidence 3456778777522 12211222222456799999887631 2222234578888878899999999998764
No 270
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=49.75 E-value=1.7e+02 Score=25.14 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=77.7
Q ss_pred ccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHH
Q psy12587 205 RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLF 281 (390)
Q Consensus 205 ~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~ 281 (390)
+.+.++.+.++++..++.+-. +.+.+.-... .+.++..++-+.+.+.|. +.+.+ .|...+.++.+++
T Consensus 104 ~~~~~~~~~~~i~~ak~~G~~-----v~~~~~~a~~----~~~~~~~~~~~~~~~~g~-~~i~l~DT~G~~~P~~v~~lv 173 (266)
T cd07944 104 HKHEFDEALPLIKAIKEKGYE-----VFFNLMAISG----YSDEELLELLELVNEIKP-DVFYIVDSFGSMYPEDIKRII 173 (266)
T ss_pred ccccHHHHHHHHHHHHHCCCe-----EEEEEEeecC----CCHHHHHHHHHHHHhCCC-CEEEEecCCCCCCHHHHHHHH
Confidence 335788888888888877543 4444333221 233555666666667774 56766 4667777776666
Q ss_pred Hhcc------eEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhc
Q psy12587 282 KFCH------CIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD 347 (390)
Q Consensus 282 ~~ad------v~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~ 347 (390)
+... +-+---....+|+. .++|+.+|.-.|-+...|+.+- .|-. ..|+++..+.....
T Consensus 174 ~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~-----aGN~---~~E~~v~~l~~~~~ 240 (266)
T cd07944 174 SLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRG-----AGNL---PTELLLDYLNNKFG 240 (266)
T ss_pred HHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCC-----cCcH---HHHHHHHHHHHhhc
Confidence 6542 21211124455554 5889999999999999888872 2211 66788877776643
No 271
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=49.72 E-value=1.3e+02 Score=26.81 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=20.2
Q ss_pred CCcchh--hhHhh-HhhhhcCCceeecC
Q psy12587 2 LGATAR--LTITA-TAWGATGPRTTAHD 26 (390)
Q Consensus 2 ~GG~~~--~~~~l-~~L~~~G~~V~~~~ 26 (390)
+||+.+ ++..| +.|.++|+.|.+++
T Consensus 45 vGGTGKTP~v~~L~~~L~~~G~~~~IlS 72 (326)
T PF02606_consen 45 VGGTGKTPLVIWLARLLQARGYRPAILS 72 (326)
T ss_pred cCCCCchHHHHHHHHHHHhcCCceEEEc
Confidence 466665 67788 99999999988883
No 272
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=49.51 E-value=2.3e+02 Score=26.64 Aligned_cols=188 Identities=10% Similarity=0.028 Sum_probs=102.6
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCc---cchhhhcCCCCCCCCeEEEEeecc--cccC
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTP---EPIENVLNPLPGKEDIVFLSINRY--ERKK 207 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~~~g~~--~~~K 207 (390)
+.-.|.|+-..+...+.+.+.....+++-+.|+..++. ...-..-. ..+.+.. +-+++.+....+ +...
T Consensus 96 l~E~dvVfGg~~kL~~~I~e~~~~~~P~~I~V~ttC~~-~lIGdDi~~v~~e~~~~~-----~~~vi~v~t~gf~g~~~~ 169 (456)
T TIGR01283 96 LTEKDVIFGGEKKLFHAIREIVERYHPPAVFVYSTCVP-GLIGDDLEAVCKAAAEKT-----GIPVIPVDSEGFYGSKNL 169 (456)
T ss_pred CCcCceEeCCHHHHHHHHHHHHHhCCCCEEEEECCChH-HHhcCCHHHHHHHHHHHh-----CCCEEEEECCCCccchhH
Confidence 55668888877888887777665554455555555432 22111101 1111111 123333333333 2345
Q ss_pred CHHHHHHHHHHHHhhcccc-----cccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH
Q psy12587 208 NLELAIYSLNSLRSRLSDE-----MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK 282 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~-----~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~ 282 (390)
|.+..++++-.......+. ...+-.+.|+|...... + ..+++++.+++|+.-+..+.+..+-+++ .-+.
T Consensus 170 G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~----d-~~el~~lL~~~Gl~v~~~~~~~~s~eei-~~~~ 243 (456)
T TIGR01283 170 GNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAG----E-FWHVKPLLEKLGIRVLATITGDSRYAEV-QTAH 243 (456)
T ss_pred HHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcc----c-HHHHHHHHHHcCCeEEEEeCCCCcHHHH-Hhcc
Confidence 7777776665433211100 00124688888644321 1 1689999999999877788887777775 4566
Q ss_pred hcceEEeCCCCCCCCccHHhhh--hcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcC
Q psy12587 283 FCHCIIYTPSNEHFGIVPIEAM--FCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDN 348 (390)
Q Consensus 283 ~adv~v~ps~~e~~~~~~~Ea~--a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~ 348 (390)
.|.+-+..... .+..+.+.| -+|+|.+.... + | +. +.+++.+.|.+++..
T Consensus 244 ~A~lniv~~~~--~~~~~a~~L~e~~GiP~~~~~~------~-----G--~~-~T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 244 RAKLNMVQCSK--SMINLARKMEEKYGIPYFEGSF------Y-----G--IE-DTSKALRDIADLFGD 295 (456)
T ss_pred cCcEEEEECHh--HHHHHHHHHHHHcCCCEEecCC------C-----c--HH-HHHHHHHHHHHHhCC
Confidence 67765543321 234567777 47999985321 1 1 22 456666666666654
No 273
>cd00789 KU_like Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.
Probab=49.45 E-value=40 Score=28.67 Aligned_cols=126 Identities=6% Similarity=0.016 Sum_probs=67.8
Q ss_pred CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCc-cHHhhhh-cCCCEEEecC---CCcccceecCcceeeecC--CH
Q psy12587 263 SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGI-VPIEAMF-CKRPVIAVNS---GGPKESVVDGRTGFLCES--NE 335 (390)
Q Consensus 263 ~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~-~~~Ea~a-~G~pvi~~~~---~~~~e~i~~~~~g~~~~~--~~ 335 (390)
...+.+.||++..++..+|-....++.|.....-+. .+.+||. .|+--|+.-+ ...--.+.....|+++.. -+
T Consensus 86 ~~~i~IlgFv~~~~I~~~y~~~syyl~P~~~~~kaf~~L~~Al~~~~kvaIar~V~r~~~~l~aL~P~~~gL~l~~Lpfa 165 (256)
T cd00789 86 TRTIEIVDFVPLDEIDPIYFDKPYYLAPDKGGEKAYALLREALRDTGKVAIAKVVLRTRERLAALRPRGKGLVLNTLRYP 165 (256)
T ss_pred CCeEEEEeEeCHHHCCHhHcCCCEEEecCCCcchHHHHHHHHHHHcCCEEEEEEEEcCCceEEEEEECCCEEEEEECCCh
Confidence 467999999999998655556667888876211111 3667876 4555555322 111112223335666543 44
Q ss_pred HHHHHHHHHHhc----CChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 336 EAFAKAMKKIVD----NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 336 ~~l~~~i~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
+++...=.--+. .+.+....+..+-.+.....|+++.+-+.|.+-+.++++.|
T Consensus 166 ddvR~~~~~~~~~~~~~~~~~el~~A~~LI~~m~~~fdp~~~~d~y~~~l~~li~~K 222 (256)
T cd00789 166 DEVRSPEELFLPIKAVKVDPKELEMAKQLIEQLTGDFDPEKYEDEYREALMELIEAK 222 (256)
T ss_pred hhccCccccCcccccCCCCHHHHHHHHHHHHHccCCCCccccCCHHHHHHHHHHHHH
Confidence 444321111011 11112233444444444457888887777777777776654
No 274
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=49.36 E-value=1.8e+02 Score=26.57 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC 284 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a 284 (390)
.++.+.++++..++.+.. +.+. .+...+.+.+|..++-+.+.+.|. +.|.+ .|...+.++.++++..
T Consensus 114 ~l~~~~~~v~~a~~~G~~-----v~~~----~ed~~r~~~~~l~~~~~~~~~~Ga-~~I~l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 114 VLERMVEAVEYAKDHGLY-----VSFS----AEDASRTDLDFLIEFAKAAEEAGA-DRVRFCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred HHHHHHHHHHHHHHCCCe-----EEEE----eccCCCCCHHHHHHHHHHHHhCCC-CEEEEeccCCCCCHHHHHHHHHHH
Confidence 345555566666665432 3332 223334456777777778888885 56666 4667777766655542
Q ss_pred ----c--eEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCccc
Q psy12587 285 ----H--CIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKE 320 (390)
Q Consensus 285 ----d--v~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e 320 (390)
+ +-++. ...+|+. .++|+.+|.-.|-+...|+.|
T Consensus 184 ~~~~~~~l~~H~--Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe 226 (378)
T PRK11858 184 VEAVDIPIEVHC--HNDFGMATANALAGIEAGAKQVHTTVNGLGE 226 (378)
T ss_pred HHhcCCeEEEEe--cCCcCHHHHHHHHHHHcCCCEEEEeeccccc
Confidence 3 33332 3445553 588999999999988888876
No 275
>PRK03094 hypothetical protein; Provisional
Probab=48.95 E-value=9.9 Score=25.42 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=17.8
Q ss_pred cchhhhHhh-HhhhhcCCceeec
Q psy12587 4 ATARLTITA-TAWGATGPRTTAH 25 (390)
Q Consensus 4 G~~~~~~~l-~~L~~~G~~V~~~ 25 (390)
|+|.-+.++ ++|+++||+|.-+
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l 27 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQL 27 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEec
Confidence 456677889 9999999998655
No 276
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=48.68 E-value=57 Score=23.08 Aligned_cols=42 Identities=10% Similarity=0.298 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEE
Q psy12587 213 IYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVL 267 (390)
Q Consensus 213 l~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~ 267 (390)
...+.++.+..|+ .+++++|+....++ +-..+.++++ +++|.
T Consensus 52 ~~~i~~i~~~fP~-----~kfiLIGDsgq~Dp------eiY~~ia~~~--P~~i~ 93 (100)
T PF09949_consen 52 RDNIERILRDFPE-----RKFILIGDSGQHDP------EIYAEIARRF--PGRIL 93 (100)
T ss_pred HHHHHHHHHHCCC-----CcEEEEeeCCCcCH------HHHHHHHHHC--CCCEE
Confidence 4556666677775 89999998766532 4445555555 45553
No 277
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=48.66 E-value=57 Score=22.77 Aligned_cols=79 Identities=9% Similarity=0.057 Sum_probs=47.6
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhh--hcCCC
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAM--FCKRP 309 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~--a~G~p 309 (390)
-++++|.|-.. .-....+++.+++.|++-.|. ..+-.++.+....+|++++.+... +-..-++.. ..|+|
T Consensus 6 ILl~C~~G~sS----S~l~~k~~~~~~~~gi~~~v~---a~~~~~~~~~~~~~Dvill~pqi~-~~~~~i~~~~~~~~ip 77 (95)
T TIGR00853 6 ILLLCAAGMST----SLLVNKMNKAAEEYGVPVKIA---AGSYGAAGEKLDDADVVLLAPQVA-YMLPDLKKETDKKGIP 77 (95)
T ss_pred EEEECCCchhH----HHHHHHHHHHHHHCCCcEEEE---EecHHHHHhhcCCCCEEEECchHH-HHHHHHHHHhhhcCCC
Confidence 35677777542 124477888888888753333 345556667788999888755421 112223333 45789
Q ss_pred EEEecCCCc
Q psy12587 310 VIAVNSGGP 318 (390)
Q Consensus 310 vi~~~~~~~ 318 (390)
|..-+...+
T Consensus 78 v~~I~~~~Y 86 (95)
T TIGR00853 78 VEVINGAQY 86 (95)
T ss_pred EEEeChhhc
Confidence 999775443
No 278
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=48.28 E-value=72 Score=23.98 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc-----ceEEeCCCCCCCCccHHhhhh-cCCCEEE
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC-----HCIIYTPSNEHFGIVPIEAMF-CKRPVIA 312 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a-----dv~v~ps~~e~~~~~~~Ea~a-~G~pvi~ 312 (390)
+.+++.+.++++ .+.+...-...++.+++..| ++++.|.-+...+..+-+|++ ..+|+|=
T Consensus 32 ~~~~~~a~~~g~--~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~vE 97 (146)
T COG0757 32 ADLEEEAAKLGV--EVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVVE 97 (146)
T ss_pred HHHHHHHHHcCc--eEEEEecCchHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEEE
Confidence 455555555554 24444433344555555443 278888888888889999886 5799986
No 279
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=47.89 E-value=88 Score=29.68 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCE
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPV 310 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pv 310 (390)
..=+++|.-... ......+.+++++++.|....+...|.++.+.+..+ ...|++|+.+-.+ +++.+.-.+-+||
T Consensus 283 ~~GIlVgTL~~q--~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKLaNF-~eID~fV~vaCPr---~sidd~~~F~KPV 356 (496)
T TIGR00272 283 CIGIVVGTLGVR--NTRETINELRKMIKTAGKKHYLFVVGKPNPAKLANF-EDIDIFVLLGCSQ---SGIIDSNEFYRPI 356 (496)
T ss_pred EEEEEEecCccC--CCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCCCEEEEccCCC---cccccHhhCCCce
Confidence 444666654332 223555788999999998888888999999887554 4799998865322 2344555555666
Q ss_pred EEe
Q psy12587 311 IAV 313 (390)
Q Consensus 311 i~~ 313 (390)
|++
T Consensus 357 lTP 359 (496)
T TIGR00272 357 VTP 359 (496)
T ss_pred ecH
Confidence 653
No 280
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=47.88 E-value=49 Score=30.14 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=42.9
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE--ecCCChHHHHHHHHhcceEEeCCCCCCCCccHH-hhhhcCC
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF--LTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPI-EAMFCKR 308 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~--~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~-Ea~a~G~ 308 (390)
+++++|... +.+++.++++. ..++.+ ...-+.+++.++++.+|++|...-.. ++..++ -|+..|+
T Consensus 25 ~v~va~r~~----------~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~ 92 (386)
T PF03435_consen 25 EVTVADRNP----------EKAERLAEKLL-GDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGV 92 (386)
T ss_dssp EEEEEESSH----------HHHHHHHT--T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-
T ss_pred cEEEEECCH----------HHHHHHHhhcc-ccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCC
Confidence 888888654 66677766532 234444 34445667899999999999754322 444444 4677899
Q ss_pred CEEEe
Q psy12587 309 PVIAV 313 (390)
Q Consensus 309 pvi~~ 313 (390)
+.|-+
T Consensus 93 ~yvD~ 97 (386)
T PF03435_consen 93 HYVDT 97 (386)
T ss_dssp EEEES
T ss_pred Ceecc
Confidence 99884
No 281
>PRK06988 putative formyltransferase; Provisional
Probab=47.49 E-value=2e+02 Score=25.39 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCC
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTP 291 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps 291 (390)
..+++.+.+++++ +.....+.++++.+.++ +.|++++.+
T Consensus 45 ~~v~~~A~~~gip--~~~~~~~~~~~~~~~l~~~~~Dliv~~~ 85 (312)
T PRK06988 45 GSVAAVAAEHGIP--VITPADPNDPELRAAVAAAAPDFIFSFY 85 (312)
T ss_pred CHHHHHHHHcCCc--EEccccCCCHHHHHHHHhcCCCEEEEeh
Confidence 4567777777664 32233444444444454 366665543
No 282
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=47.17 E-value=1.2e+02 Score=25.52 Aligned_cols=76 Identities=7% Similarity=-0.077 Sum_probs=43.3
Q ss_pred CCcEEEecC-CChH---HHHHHHHhcceEEeC-CCCCCCCcc-HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHH
Q psy12587 263 SDNVLFLTS-PSDA---AKISLFKFCHCIIYT-PSNEHFGIV-PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEE 336 (390)
Q Consensus 263 ~~~v~~~g~-~~~~---e~~~~~~~adv~v~p-s~~e~~~~~-~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~ 336 (390)
.++|.+.|. ++.. ...+.++.||++|+- +....+|.. +.+.+..|.|+|.-+.......- +....+.+..+.+
T Consensus 151 rP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~-~~~~d~~~~~~~~ 229 (235)
T cd01408 151 KPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLG-KRPFDVALLGDCD 229 (235)
T ss_pred cCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCC-CCCcCEEEeCCHH
Confidence 467888887 5552 334667789987664 333444443 55666789999987755433210 1223344443555
Q ss_pred HHH
Q psy12587 337 AFA 339 (390)
Q Consensus 337 ~l~ 339 (390)
++.
T Consensus 230 ~~l 232 (235)
T cd01408 230 DGV 232 (235)
T ss_pred HHH
Confidence 543
No 283
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=47.07 E-value=1.7e+02 Score=25.06 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=67.8
Q ss_pred ccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-CChHHHHHHHHh
Q psy12587 205 RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-PSDAAKISLFKF 283 (390)
Q Consensus 205 ~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~-~~~~e~~~~~~~ 283 (390)
...|++.+++.+++.- +.-+++-+-+.. -..++.+.++++|+. .|.+..+ .+.+.+..+.+.
T Consensus 104 ~~~G~e~F~~~~~~aG----------vdgviipDLP~e------e~~~~~~~~~~~gi~-~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 104 LHYGINKFIKKISQAG----------VKGLIIPDLPYE------ESDYLISVCNLYNIE-LILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred HHhCHHHHHHHHHHcC----------CeEEEecCCCHH------HHHHHHHHHHHcCCC-EEEEECCCCCHHHHHHHHHh
Confidence 3558998888776642 455566655542 126778888999984 5655555 556778888999
Q ss_pred cceEEeC-CCCCC------CCccHHhhh-----hcCCCEEEecCC-----CcccceecCcceeeecCCHHHHHHHH
Q psy12587 284 CHCIIYT-PSNEH------FGIVPIEAM-----FCKRPVIAVNSG-----GPKESVVDGRTGFLCESNEEAFAKAM 342 (390)
Q Consensus 284 adv~v~p-s~~e~------~~~~~~Ea~-----a~G~pvi~~~~~-----~~~e~i~~~~~g~~~~~~~~~l~~~i 342 (390)
++-||+. |.... .+..+-|.+ ..++|+++ +.| ...++...|..|+++- .++.+.+
T Consensus 167 a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v-GFGI~~~e~~~~~~~~GADGvVVG---Salv~~i 238 (263)
T CHL00200 167 APGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL-GFGISTSEQIKQIKGWNINGIVIG---SACVQIL 238 (263)
T ss_pred CCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE-ECCcCCHHHHHHHHhcCCCEEEEC---HHHHHHH
Confidence 9944442 43211 122233333 56788887 222 1223333445677765 3444444
No 284
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=46.57 E-value=1.6e+02 Score=25.87 Aligned_cols=104 Identities=13% Similarity=0.014 Sum_probs=59.1
Q ss_pred EEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChH
Q psy12587 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDA 275 (390)
Q Consensus 196 ~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~ 275 (390)
.++|+|. .+....+++.+.+...+ +.-++.=......+...--..-+++.+.+++++ |.=...+.+.
T Consensus 3 kivF~GT------p~fa~~~L~~L~~~~~e-----ivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ip--v~qP~~l~~~ 69 (307)
T COG0223 3 RIVFFGT------PEFAVPSLEALIEAGHE-----IVAVVTQPDKPAGRGKKLTPSPVKRLALELGIP--VFQPEKLNDP 69 (307)
T ss_pred EEEEEcC------chhhHHHHHHHHhCCCc-----eEEEEeCCCCccCCCCcCCCChHHHHHHHcCCc--eeccccCCcH
Confidence 4677776 34455566666554332 444443322222222222226678888888875 3223345655
Q ss_pred HHHHHHHh--cceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 276 AKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 276 e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
|..+.++. +|++|..++.--+|-.+++..-.|+-=|.
T Consensus 70 e~~~~l~~l~~D~ivvvayG~ilp~~iL~~~~~G~iNvH 108 (307)
T COG0223 70 EFLEELAALDPDLIVVVAYGQILPKEILDLPPYGCINLH 108 (307)
T ss_pred HHHHHHhccCCCEEEEEehhhhCCHHHHhcCcCCeEEec
Confidence 66677776 58888777655566667777776665544
No 285
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=46.17 E-value=1.4e+02 Score=25.04 Aligned_cols=93 Identities=11% Similarity=-0.031 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHH------HHHHhcce
Q psy12587 213 IYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKI------SLFKFCHC 286 (390)
Q Consensus 213 l~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~------~~~~~adv 286 (390)
+++..++-+.++. -.+++.|+.......+ -..+++.+.+.|+++.-.+....+..-.. +++..-++
T Consensus 70 l~~A~~LYk~gk~-----~~ilvSGg~~~~~~~E---a~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~ 141 (239)
T PRK10834 70 IQGAINAYNSGKV-----NYLLLSGDNALQSYNE---PMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDF 141 (239)
T ss_pred HHHHHHHHHhCCC-----CEEEEeCCCCCCCCCH---HHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCE
Confidence 4444455555553 5677777643221111 14577888889998776666554433322 33333345
Q ss_pred EEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 287 IIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 287 ~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+|.++ .-..+.+++-|-..|..+++..
T Consensus 142 iIVTq-~fHm~RA~~ia~~~Gi~~~~~~ 168 (239)
T PRK10834 142 IIITQ-RFHCERALFIALHMGIQAQCYA 168 (239)
T ss_pred EEECC-HHHHHHHHHHHHHcCCceEEEe
Confidence 55544 3344566777888898887764
No 286
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=46.11 E-value=41 Score=26.20 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe-cC-CC---hH----HHHH
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL-TS-PS---DA----AKIS 279 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~-g~-~~---~~----e~~~ 279 (390)
-..++.+..++.+.... .+..+++|+.+.. .+.+++....+|. +.|... +. .. .+ -+.+
T Consensus 17 ~~e~l~~A~~La~~~g~----~v~av~~G~~~~~-------~~~l~~~l~~~G~-d~v~~~~~~~~~~~~~~~~a~~l~~ 84 (164)
T PF01012_consen 17 SLEALEAARRLAEALGG----EVTAVVLGPAEEA-------AEALRKALAKYGA-DKVYHIDDPALAEYDPEAYADALAE 84 (164)
T ss_dssp HHHHHHHHHHHHHCTTS----EEEEEEEETCCCH-------HHHHHHHHHSTTE-SEEEEEE-GGGTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC----eEEEEEEecchhh-------HHHHhhhhhhcCC-cEEEEecCccccccCHHHHHHHHHH
Confidence 45678888888875432 4888889942321 1566677777886 445443 22 21 22 2345
Q ss_pred HHHh--cceEEeCCCCCCCCccHHhhhhcCCCEEEe
Q psy12587 280 LFKF--CHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 280 ~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~ 313 (390)
+++. .|++++|+...+-.+...=|..+|.|+++.
T Consensus 85 ~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 85 LIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp HHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred HHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccce
Confidence 5555 889999877555445555577788888773
No 287
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=46.08 E-value=1.4e+02 Score=26.87 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=41.7
Q ss_pred EEecCCChHHHHHHHHhcceEEeC---CCCCCCCccHHhhhhcC------CCEEEecCCCcccceecCc--ceeeecCCH
Q psy12587 267 LFLTSPSDAAKISLFKFCHCIIYT---PSNEHFGIVPIEAMFCK------RPVIAVNSGGPKESVVDGR--TGFLCESNE 335 (390)
Q Consensus 267 ~~~g~~~~~e~~~~~~~adv~v~p---s~~e~~~~~~~Ea~a~G------~pvi~~~~~~~~e~i~~~~--~g~~~~~~~ 335 (390)
.++-+++.+.+.+.+++++-++.. ...-|+|-.+.|.++-. .|+.--.. ....+.... ...+.+ +.
T Consensus 268 ~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~--~d~~~p~~~~le~~~~~-~~ 344 (355)
T PTZ00182 268 RSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCG--ADTPFPYAKNLEPAYLP-DK 344 (355)
T ss_pred eeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCC--CCccCCCChHHHHHhCC-CH
Confidence 344556777777888887765553 22456777777776543 35543221 112221111 112223 88
Q ss_pred HHHHHHHHHH
Q psy12587 336 EAFAKAMKKI 345 (390)
Q Consensus 336 ~~l~~~i~~l 345 (390)
+++.+++.++
T Consensus 345 ~~i~~~~~~~ 354 (355)
T PTZ00182 345 EKVVEAAKRV 354 (355)
T ss_pred HHHHHHHHHh
Confidence 8888888765
No 288
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=45.78 E-value=74 Score=26.98 Aligned_cols=86 Identities=10% Similarity=0.064 Sum_probs=48.7
Q ss_pred HHHHHhcceEEeCC-CCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc--CChhHH
Q psy12587 278 ISLFKFCHCIIYTP-SNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD--NDGNII 353 (390)
Q Consensus 278 ~~~~~~adv~v~ps-~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~--~~~~~~ 353 (390)
..-++.||+++.-. ..|+|--.+.++.......+..-..+....-.+...-++.++ +...+++.|.+.+. +|+ ..
T Consensus 42 ~~~l~~Adlvv~~G~~~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~npH~Wldp~~~~~~~~~Ia~~L~~~~P~-~~ 120 (256)
T PF01297_consen 42 IKKLQKADLVVYNGLGLEPWLEKLLESSQNPKVKVIDLSEGIDLDHHGHNPHVWLDPENAKKMAEAIADALSELDPA-NK 120 (256)
T ss_dssp HHHHHHSSEEEES-TTTSCCHHHHHHTTTTTTTEEEETTTTS-GSTTCBESTGGGSHHHHHHHHHHHHHHHHHHTGG-GH
T ss_pred HHHHHhCCEEEEeCCccchhhhhhhhcccccccceEEeecccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhCcc-ch
Confidence 57789999999865 367775566655555555555443444221111123355565 77777777766554 566 55
Q ss_pred HHHHHHHHHHH
Q psy12587 354 QQFSQFGFNRF 364 (390)
Q Consensus 354 ~~~~~~~~~~~ 364 (390)
....+|+.++.
T Consensus 121 ~~y~~N~~~~~ 131 (256)
T PF01297_consen 121 DYYEKNAEKYL 131 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55666665554
No 289
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=45.58 E-value=1.4e+02 Score=25.71 Aligned_cols=86 Identities=10% Similarity=0.048 Sum_probs=48.3
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhcCCCEEEecCC-Ccccceec-----CcceeeecC-CHHHHHHHHHHHhc--
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSG-GPKESVVD-----GRTGFLCES-NEEAFAKAMKKIVD-- 347 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~~~~~-~~~e~i~~-----~~~g~~~~~-~~~~l~~~i~~l~~-- 347 (390)
..-+++||+++.-.. .|+|--.++++...+.++|....+ .......+ .+.-++.++ +...+++.|.+.+.
T Consensus 45 ~~~l~~Adliv~~G~~~E~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~ 124 (276)
T cd01016 45 VEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIALEDTLDRSQLILDEEEGTYDPHIWFDVKLWKYAVKAVAEVLSEK 124 (276)
T ss_pred HHHHHhCCEEEEcCcChHHHHHHHHHHhccCCceEEeccCcCcccccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 577888888887543 466555666665434455543221 11111111 134566666 77888888877765
Q ss_pred CChhHHHHHHHHHHHHH
Q psy12587 348 NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 348 ~~~~~~~~~~~~~~~~~ 364 (390)
+|. ......+|+..+.
T Consensus 125 dP~-~~~~y~~N~~~~~ 140 (276)
T cd01016 125 LPE-HKDEFQANSEAYV 140 (276)
T ss_pred Ccc-cHHHHHHHHHHHH
Confidence 666 4555555555554
No 290
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=45.43 E-value=2.5e+02 Score=26.13 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=29.2
Q ss_pred EEEeeccc-ccCCHHHHHHHH-HHHHhhcccccccceEEEEEcCCCCCC
Q psy12587 197 FLSINRYE-RKKNLELAIYSL-NSLRSRLSDEMKTHVKLVVAGGYDPHN 243 (390)
Q Consensus 197 i~~~g~~~-~~K~~~~ll~a~-~~l~~~~~~~~~~~~~l~i~G~~~~~~ 243 (390)
|+..|... .+.|=+-++.++ ..|++..|+ +.+.+.-..|..+
T Consensus 3 i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~-----~~i~v~S~~P~~t 46 (426)
T PRK10017 3 LLILGNHTCGNRGDSAILRGLLDAINILNPH-----AEVDVMSRYPVSS 46 (426)
T ss_pred EEEEccccCCCccHHHHHHHHHHHHHhhCCC-----CeEEEEecCccch
Confidence 34455554 467877777665 467777775 9999998887653
No 291
>TIGR02772 Ku_bact Ku protein, prokaryotic. Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion.
Probab=45.27 E-value=32 Score=29.28 Aligned_cols=123 Identities=7% Similarity=0.020 Sum_probs=69.4
Q ss_pred CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCC--c-cHHhhhh-cCCCEEEecC---CCcccceecCcceeeecC--
Q psy12587 263 SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFG--I-VPIEAMF-CKRPVIAVNS---GGPKESVVDGRTGFLCES-- 333 (390)
Q Consensus 263 ~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~--~-~~~Ea~a-~G~pvi~~~~---~~~~e~i~~~~~g~~~~~-- 333 (390)
...+.++||++.+++..+|-....++.|. ++.. . .+.+||. .|+--|+.-+ ...--.+.....|+++..
T Consensus 87 ~~~i~I~gFv~~~~i~~~y~~~syyl~P~--~~~~~a~~~L~~Al~~~~kvaIar~v~r~r~~l~aL~P~~~gL~l~~Lp 164 (258)
T TIGR02772 87 TKTIEIEAFVDADEIDPIYFDTPYYLAPD--KGGEKAYALLREALEDTGKVGIAKVVLRGRERLAALRPVGKGLVLTTLR 164 (258)
T ss_pred CCeEEEEEEeCHHHCChheeCCCEEEccC--CCchHHHHHHHHHHHHcCCEEEEEEEEcCCcEEEEEEECCCeEEEEECC
Confidence 46789999999999876666667888886 2222 1 3678886 4555554322 111112223334666543
Q ss_pred CHHHHHHHHHHH---hc--CChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 334 NEEAFAKAMKKI---VD--NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 334 ~~~~l~~~i~~l---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
=++++... .++ .. .+.+..-.+.++-.+.....|+++.+-+.+.+-+.++++.|
T Consensus 165 fadEvR~~-~~~~~~~~~~~~~~~el~~A~~LI~~mt~~fdp~~y~d~y~~~l~~~i~~K 223 (258)
T TIGR02772 165 YPDEVRSP-DEFFGPIKDVEVDPEELELAGQLIDKMTGKFDPEDYHDEYREALLELVDAK 223 (258)
T ss_pred ChhhccCh-hhcccccccCCCCHHHHHHHHHHHHHhccCCChhhCCCHHHHHHHHHHHHH
Confidence 34443322 111 11 11112334444444444567999999888888888887665
No 292
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=45.19 E-value=2.1e+02 Score=24.89 Aligned_cols=94 Identities=16% Similarity=0.043 Sum_probs=55.9
Q ss_pred EEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChH
Q psy12587 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDA 275 (390)
Q Consensus 196 ~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~ 275 (390)
+++|.|. .+-|=+.+++++. .+..+ +.++++....+ ++.. +.+ +|.-....+..
T Consensus 3 l~GyyG~--~N~GDe~~l~~~l--~~l~~-----~~~~~v~s~~p----------~~~~---~~~----~v~~~~r~~~~ 56 (298)
T TIGR03609 3 LCGYYGF--GNLGDEALLAALL--RELPP-----GVEPTVLSNDP----------AETA---KLY----GVEAVNRRSLL 56 (298)
T ss_pred EEEecCC--CCcchHHHHHHHH--HhcCC-----CCeEEEecCCh----------HHHH---hhc----CceEEccCCHH
Confidence 3455553 4467777888873 33234 37788876554 2222 222 34445566777
Q ss_pred HHHHHHHhcceEEeCCC---CCCCCc-c-------HHhhhhcCCCEEEecC
Q psy12587 276 AKISLFKFCHCIIYTPS---NEHFGI-V-------PIEAMFCKRPVIAVNS 315 (390)
Q Consensus 276 e~~~~~~~adv~v~ps~---~e~~~~-~-------~~Ea~a~G~pvi~~~~ 315 (390)
++...+..+|++|...- .+..+. . ..-|..+|+|++....
T Consensus 57 ~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~ 107 (298)
T TIGR03609 57 AVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQ 107 (298)
T ss_pred HHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEec
Confidence 88899999999988632 232222 1 2345668999988654
No 293
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=44.65 E-value=89 Score=21.79 Aligned_cols=76 Identities=11% Similarity=0.105 Sum_probs=46.5
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHh--hhhcCCCE
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIE--AMFCKRPV 310 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~E--a~a~G~pv 310 (390)
++++|.|-... -..+.+++.+++.|++-.|.- .+-.++......+|++++.+... +-..-++ +.-.++||
T Consensus 3 l~~Cg~G~sTS----~~~~ki~~~~~~~~~~~~v~~---~~~~~~~~~~~~~Diil~~Pqv~-~~~~~i~~~~~~~~~pv 74 (96)
T cd05564 3 LLVCSAGMSTS----ILVKKMKKAAEKRGIDAEIEA---VPESELEEYIDDADVVLLGPQVR-YMLDEVKKKAAEYGIPV 74 (96)
T ss_pred EEEcCCCchHH----HHHHHHHHHHHHCCCceEEEE---ecHHHHHHhcCCCCEEEEChhHH-HHHHHHHHHhccCCCcE
Confidence 56777775431 234688889999888633433 34455566788999888755421 1122233 34578999
Q ss_pred EEecCC
Q psy12587 311 IAVNSG 316 (390)
Q Consensus 311 i~~~~~ 316 (390)
..-+..
T Consensus 75 ~~I~~~ 80 (96)
T cd05564 75 AVIDMM 80 (96)
T ss_pred EEcChH
Confidence 887643
No 294
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=44.40 E-value=1.9e+02 Score=24.36 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=37.4
Q ss_pred CCcEEEecC--CChHHHHHHHHhcceEEeC-CCCCCCCc--cHHhhhhcCCCEEEecCCC
Q psy12587 263 SDNVLFLTS--PSDAAKISLFKFCHCIIYT-PSNEHFGI--VPIEAMFCKRPVIAVNSGG 317 (390)
Q Consensus 263 ~~~v~~~g~--~~~~e~~~~~~~adv~v~p-s~~e~~~~--~~~Ea~a~G~pvi~~~~~~ 317 (390)
.++|.+.|. ++.+++.+.+..||++|+- +.....|. -+.+|...|.|+|.-+...
T Consensus 150 rP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 150 RPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred CCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 477888887 4556677789999987664 22233333 2456888999988877644
No 295
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=43.97 E-value=1.7e+02 Score=25.51 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-CChHHHHHHHHhcce
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-PSDAAKISLFKFCHC 286 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~-~~~~e~~~~~~~adv 286 (390)
+.+...+|+..+.++.++ ..++|+++.. +.+++..... .+.+.+.+. -+.+++ .+|+.||.
T Consensus 189 ~~~Yy~~Ai~~i~~~~~~-----~~f~ifSDD~----------~w~k~~l~~~--~~~~~~~~~~~~~~Dl-~lms~C~~ 250 (298)
T PF01531_consen 189 DKDYYKKAIEYIREKVKN-----PKFFIFSDDI----------EWCKENLKFS--NGDVYFSGNNSPYEDL-YLMSQCKH 250 (298)
T ss_pred CHHHHHHHHHHHHHhCCC-----CEEEEEcCCH----------HHHHHHHhhc--CCcEEEECCCCHHHHH-HHHHhCCc
Confidence 357788999999888764 8999999764 4444444433 244566665 455565 57999999
Q ss_pred EEeC
Q psy12587 287 IIYT 290 (390)
Q Consensus 287 ~v~p 290 (390)
.|.+
T Consensus 251 ~Iis 254 (298)
T PF01531_consen 251 FIIS 254 (298)
T ss_pred EEEC
Confidence 8876
No 296
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=43.82 E-value=2.2e+02 Score=24.74 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=80.3
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCC-CCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHH
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSV-YTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLEL 211 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ 211 (390)
-.+.|.|++........+.+.+. . .+-|+..|+ |+....-.. .+. .+. ..+. + +. ..-.+..
T Consensus 57 ~~~~DlIi~~gt~aa~~~~~~~~---~-~iPVVf~~V~dp~~~~l~~------~~~-~~~-~nvT-G-v~---~~~~~~~ 119 (294)
T PF04392_consen 57 AQKPDLIIAIGTPAAQALAKHLK---D-DIPVVFCGVSDPVGAGLVD------SLD-RPG-KNVT-G-VS---ERPPIEK 119 (294)
T ss_dssp CTS-SEEEEESHHHHHHHHHH-S---S--S-EEEECES-TTTTTS-S-------SS-S---SSEE-E-EE---E---HHH
T ss_pred cCCCCEEEEeCcHHHHHHHHhcC---C-CcEEEEEeccChhhhhccc------ccc-CCC-CCEE-E-EE---CCcCHHH
Confidence 45789999998777777777643 2 144555555 221111000 000 011 2222 2 22 3334566
Q ss_pred HHHHHHHHHhhcccccccceEE-EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHH----Hhcce
Q psy12587 212 AIYSLNSLRSRLSDEMKTHVKL-VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLF----KFCHC 286 (390)
Q Consensus 212 ll~a~~~l~~~~~~~~~~~~~l-~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~----~~adv 286 (390)
-++.++++.-.. -++ +++.+... ......+.+++.++++|+. +....--+..++...+ ...|+
T Consensus 120 ~l~l~~~l~P~~-------k~igvl~~~~~~---~~~~~~~~~~~~a~~~g~~--l~~~~v~~~~~~~~~~~~l~~~~da 187 (294)
T PF04392_consen 120 QLELIKKLFPDA-------KRIGVLYDPSEP---NSVAQIEQLRKAAKKLGIE--LVEIPVPSSEDLEQALEALAEKVDA 187 (294)
T ss_dssp HHHHHHHHSTT---------EEEEEEETT-H---HHHHHHHHHHHHHHHTT-E--EEEEEESSGGGHHHHHHHHCTT-SE
T ss_pred HHHHHHHhCCCC-------CEEEEEecCCCc---cHHHHHHHHHHHHHHcCCE--EEEEecCcHhHHHHHHHHhhccCCE
Confidence 666666654321 233 34433321 2235567888888888873 3222222333433333 45787
Q ss_pred EEeCCC---CCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHH----HHHHHHHHHhc
Q psy12587 287 IIYTPS---NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEE----AFAKAMKKIVD 347 (390)
Q Consensus 287 ~v~ps~---~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~----~l~~~i~~l~~ 347 (390)
++++.. ...+...+..+...++|++++.. ..+..|..+-+.. |.. ..++...++++
T Consensus 188 ~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~~----~~v~~Gal~~~~~-~~~~~G~~Aa~~a~~IL~ 250 (294)
T PF04392_consen 188 LYLLPDNLVDSNFEAILQLANEAKIPVFGSSD----FYVKAGALGGYSV-DYYEQGRQAAEMAVRILK 250 (294)
T ss_dssp EEE-S-HHHHHTHHHHHHHCCCTT--EEESSH----HHHCTT-SEEEE---HHHHHHHHHHHHHHHCT
T ss_pred EEEECCcchHhHHHHHHHHHHhcCCCEEECCH----HHhcCCcEEEEcc-CHHHHHHHHHHHHHHHHC
Confidence 777643 12233345567789999999752 3344444333333 333 33444555554
No 297
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=43.82 E-value=2.6e+02 Score=25.56 Aligned_cols=171 Identities=12% Similarity=0.094 Sum_probs=93.3
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccc--ccCCHH
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYE--RKKNLE 210 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~--~~K~~~ 210 (390)
+...|.|.--.+...+.+.+......++-+.++..++ .+..-..-. ..-+.+.. ..+-+++.+....+. ...|.+
T Consensus 55 l~e~d~v~Gg~e~l~~~i~~~~~~~~p~~i~v~~tc~-~~liGdDi~-~v~~~~~~-~~~~~vv~~~~~gf~~~~~~G~~ 131 (399)
T cd00316 55 MTEKDVVFGGGEKLLEAIINELKRYKPKVIFVYTTCT-TELIGDDIE-AVAKEASK-EIGIPVVPASTPGFRGSQSAGYD 131 (399)
T ss_pred CCcCceeeCCHHHHHHHHHHHHHHcCCCEEEEecCch-hhhhccCHH-HHHHHHHH-hhCCceEEeeCCCCcccHHHHHH
Confidence 3445666665677777776655544343444444433 222221111 11111100 112344444444443 345777
Q ss_pred HHHHHHHHHHhhc--ccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEE
Q psy12587 211 LAIYSLNSLRSRL--SDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCII 288 (390)
Q Consensus 211 ~ll~a~~~l~~~~--~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v 288 (390)
..++++.+..... +. ....-.+.++|...... .-..+++++.++.|+.-+..+.+..+-+++. -+..|.+.+
T Consensus 132 ~a~~~~~~~~~~~~~~~-~~~~~~vNlig~~~~~~----~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~-~~~~A~~nl 205 (399)
T cd00316 132 AAVKAIIDHLVGTAEPE-ETEPGSVNLIGGYNLGG----GDLRELKRLLEEMGIRVNALFDGGTTVEELR-ELGNAKLNL 205 (399)
T ss_pred HHHHHHHHHHhcccCcC-CCCCCcEEEECCCCCch----hhHHHHHHHHHHcCCcEEEEcCCCCCHHHHH-hhccCcEEE
Confidence 7777777554321 00 11235688888765431 1238899999999997666666656777754 466777666
Q ss_pred eCCCCCCCCccHHhhhh--cCCCEEEec
Q psy12587 289 YTPSNEHFGIVPIEAMF--CKRPVIAVN 314 (390)
Q Consensus 289 ~ps~~e~~~~~~~Ea~a--~G~pvi~~~ 314 (390)
..+.. ++..+.|+|. +|+|.+...
T Consensus 206 v~~~~--~g~~~a~~l~~~~g~p~~~~~ 231 (399)
T cd00316 206 VLCRE--SGLYLARYLEEKYGIPYILIN 231 (399)
T ss_pred EecHh--HHHHHHHHHHHHhCCCeEEeC
Confidence 54432 3555666664 899998865
No 298
>PRK12862 malic enzyme; Reviewed
Probab=43.33 E-value=1.7e+02 Score=29.66 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEec--------C---CCh-----
Q psy12587 212 AIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLT--------S---PSD----- 274 (390)
Q Consensus 212 ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g--------~---~~~----- 274 (390)
++.|++...+... +.++++.|.|... --+-+++...|+. +++.+.. . +++
T Consensus 180 l~~a~~~~~~~~~-----~~~iv~~GaGaag--------~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~ 246 (763)
T PRK12862 180 LLNGLKLVGKDIE-----DVKLVASGAGAAA--------LACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARY 246 (763)
T ss_pred HHHHHHHhCCChh-----hcEEEEEChhHHH--------HHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHH
Confidence 3455554444444 4899999988654 4455555556764 3555543 1 111
Q ss_pred ------HHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 275 ------AAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 275 ------~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
..+.+.++.+|+++-.|....|.--+++.|+ ..|+|-
T Consensus 247 a~~~~~~~l~e~~~~~~v~iG~s~~g~~~~~~v~~M~-~~piif 289 (763)
T PRK12862 247 AQKTDARTLAEVIEGADVFLGLSAAGVLKPEMVKKMA-PRPLIF 289 (763)
T ss_pred hhhcccCCHHHHHcCCCEEEEcCCCCCCCHHHHHHhc-cCCEEE
Confidence 1356778889999988764445556788887 677776
No 299
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=42.90 E-value=1.6e+02 Score=23.08 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=47.5
Q ss_pred HHHHHHHH--hcceEEeCCC-CCCCCccHHhhhhcCCCEEEecCCCc----ccceecCcceeeecC-CHHHHHHHHHHHh
Q psy12587 275 AAKISLFK--FCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGP----KESVVDGRTGFLCES-NEEAFAKAMKKIV 346 (390)
Q Consensus 275 ~e~~~~~~--~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~~~~~~~----~e~i~~~~~g~~~~~-~~~~l~~~i~~l~ 346 (390)
.+....+. ..|++++-.. .+.-|..+++.+....|+|....... .+.+..|..+++..+ +.+++.+++..++
T Consensus 37 ~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~ 116 (196)
T PRK10360 37 REALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVA 116 (196)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 43344443 3577777543 23445667777766788877433222 233456778899999 9999999999887
Q ss_pred cC
Q psy12587 347 DN 348 (390)
Q Consensus 347 ~~ 348 (390)
..
T Consensus 117 ~~ 118 (196)
T PRK10360 117 TG 118 (196)
T ss_pred cC
Confidence 64
No 300
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=42.64 E-value=2e+02 Score=24.25 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCcEEEecC-CCh---HHHHHHHHhcceEEeC-CCCCCCCcc--HHhhhhcCCCEEEecCCCcccceecCcceeeecCCH
Q psy12587 263 SDNVLFLTS-PSD---AAKISLFKFCHCIIYT-PSNEHFGIV--PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNE 335 (390)
Q Consensus 263 ~~~v~~~g~-~~~---~e~~~~~~~adv~v~p-s~~e~~~~~--~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~ 335 (390)
.++|.+.|. ++. .+..+.+..||++|+- +.....|.. +..|...|.|+|.-+.+..+- +....+.+..+.
T Consensus 154 rP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~---d~~~~~~i~~~~ 230 (244)
T PRK14138 154 RPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPL---DDIATLKYNMDV 230 (244)
T ss_pred CCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCC---CcceeEEEeCCH
Confidence 467888887 554 3456777889987764 323333433 335777899998877643321 122334444466
Q ss_pred HHHHHHHHHH
Q psy12587 336 EAFAKAMKKI 345 (390)
Q Consensus 336 ~~l~~~i~~l 345 (390)
.++...+.+.
T Consensus 231 ~~~l~~l~~~ 240 (244)
T PRK14138 231 VEFANRVMSE 240 (244)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 301
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=42.60 E-value=48 Score=23.00 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=24.5
Q ss_pred HHHHHhcceEEeCCCCCCCCccHHh---hhhcCCCEE
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIVPIE---AMFCKRPVI 311 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~~~E---a~a~G~pvi 311 (390)
...+..||.+++..-++.....-+| |...|++|+
T Consensus 54 l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 54 LAMLSDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHHhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 4677899988776666666555555 667888886
No 302
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=42.49 E-value=18 Score=27.08 Aligned_cols=94 Identities=12% Similarity=0.153 Sum_probs=48.2
Q ss_pred ceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCc-----ceeeecCCHHHHHHHHHHHhcCChhHHHHHHHH
Q psy12587 285 HCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGR-----TGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQF 359 (390)
Q Consensus 285 dv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~-----~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 359 (390)
..+++++-.+.--..++|.+..|=-||+.|.|=...++..+. .|..++ .+. |..+|.... ...++++.
T Consensus 30 ~~i~Vd~g~DaaD~~I~~~~~~gDiVITqDigLA~~~l~Kga~vl~~rG~~yt--~~n----I~~~L~~R~-~~~~lR~~ 102 (130)
T PF02639_consen 30 EMIVVDSGFDAADFYIVNHAKPGDIVITQDIGLASLLLAKGAYVLNPRGKEYT--KEN----IDELLAMRH-LMAKLRRA 102 (130)
T ss_pred EEEEECCCCChHHHHHHHcCCCCCEEEECCHHHHHHHHHCCCEEECCCCCCCC--HHH----HHHHHHHHH-HHHHHHHh
Confidence 344444444444556677777777777777665544443321 333333 333 444554454 55555555
Q ss_pred HHH-HHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 360 GFN-RFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 360 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
+.. .--+.|+.+.. ++|.+.+++++.
T Consensus 103 G~~~~gpk~~~~~d~-~~F~~~L~~~l~ 129 (130)
T PF02639_consen 103 GKRTKGPKKFTKKDR-QRFANALDRLLQ 129 (130)
T ss_pred CCCCCCCCCCCHHHH-HHHHHHHHHHHc
Confidence 432 11244555443 555666665554
No 303
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=42.46 E-value=2.1e+02 Score=24.07 Aligned_cols=110 Identities=17% Similarity=0.090 Sum_probs=63.2
Q ss_pred EEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChH
Q psy12587 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDA 275 (390)
Q Consensus 196 ~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~ 275 (390)
.++..+++...--++...+.++.+..+. -++.++...... .+...|.+.+++..+++|.. +..+... +
T Consensus 4 ll~s~~~~~~~~~l~~~~~~~~~~~~~~-------~~v~fIPtAs~~-~~~~~y~~~~~~af~~lG~~--v~~l~~~--~ 71 (233)
T PRK05282 4 LLLSNSTLPGTGYLEHALPLIAELLAGR-------RKAVFIPYAGVT-QSWDDYTAKVAEALAPLGIE--VTGIHRV--A 71 (233)
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHcCC-------CeEEEECCCCCC-CCHHHHHHHHHHHHHHCCCE--EEEeccc--h
Confidence 3444444443222244444455443332 356666654322 23457888899999998874 4333222 3
Q ss_pred HHHHHHHhcceEEeCCC--------CCCCCc--cHHhhhhcCCCEEEecCCC
Q psy12587 276 AKISLFKFCHCIIYTPS--------NEHFGI--VPIEAMFCKRPVIAVNSGG 317 (390)
Q Consensus 276 e~~~~~~~adv~v~ps~--------~e~~~~--~~~Ea~a~G~pvi~~~~~~ 317 (390)
+..+.+..||+++++.= +...++ .+-|+...|+|++.+..|.
T Consensus 72 d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 72 DPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred hhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 34688999998887631 122233 4568888999998877654
No 304
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=42.42 E-value=92 Score=24.68 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=26.3
Q ss_pred HHHHHHHhcceEEe--CCCCCCCC---ccHHhhhhcCCCEEEecCC
Q psy12587 276 AKISLFKFCHCIIY--TPSNEHFG---IVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 276 e~~~~~~~adv~v~--ps~~e~~~---~~~~Ea~a~G~pvi~~~~~ 316 (390)
++.++++.||++++ |...++.+ -..++.|--|.-+|-+..|
T Consensus 84 ~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 84 SLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp SHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSG
T ss_pred ehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccch
Confidence 44679999998766 44444444 4578888878766665544
No 305
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=42.24 E-value=1.9e+02 Score=25.10 Aligned_cols=85 Identities=9% Similarity=-0.019 Sum_probs=45.4
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhcCCCEEEecCC-Ccccce--------------------e--c--Ccceeee
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSG-GPKESV--------------------V--D--GRTGFLC 331 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~~~~~-~~~e~i--------------------~--~--~~~g~~~ 331 (390)
..-+++||++|.... .|+|--.+++... +.++|....+ +..... . + .+.-++.
T Consensus 47 ~~~l~~Adliv~~G~~le~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~dPHiWl 125 (286)
T cd01019 47 ARKLQEADLVVWIGPDLEAFLDKVLQGRK-KGKVLTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGGLDPHLWL 125 (286)
T ss_pred HHHHHhCCEEEEeCCCchHHHHHHHHhcC-cCceEecccCCcccccccccccccccccccccccccCCCCCCCCCCccCC
Confidence 577888888887643 4655556665542 2445443211 110000 0 0 1233556
Q ss_pred cC-CHHHHHHHHHHHhc--CChhHHHHHHHHHHHHH
Q psy12587 332 ES-NEEAFAKAMKKIVD--NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 332 ~~-~~~~l~~~i~~l~~--~~~~~~~~~~~~~~~~~ 364 (390)
++ +...++++|.+-+. +|+ ......+|+.++.
T Consensus 126 dp~n~~~~a~~I~~~L~~~dP~-~~~~y~~N~~~~~ 160 (286)
T cd01019 126 SPENAAEVAQAVAEKLSALDPD-NAATYAANLEAFN 160 (286)
T ss_pred CHHHHHHHHHHHHHHHHHHCch-hHHHHHHHHHHHH
Confidence 66 77777887777664 566 5555566655554
No 306
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=42.22 E-value=2.2e+02 Score=24.72 Aligned_cols=115 Identities=12% Similarity=0.095 Sum_probs=65.8
Q ss_pred CCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 191 GKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 191 ~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
+.+...|+..|-+ +...++|+..|++++.+ +.++=+..-.
T Consensus 191 dG~D~tiiA~G~m-----v~~al~AA~~L~~~GIs-----a~Vi~m~tIK------------------------------ 230 (312)
T COG3958 191 DGSDLTIIATGVM-----VAEALEAAEILKKEGIS-----AAVINMFTIK------------------------------ 230 (312)
T ss_pred cCCceEEEecCcc-----hHHHHHHHHHHHhcCCC-----EEEEecCccC------------------------------
Confidence 3466676766654 56788888888887653 4333222221
Q ss_pred CCChHHHHHHHHhcceEEeC---CCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC---CHHHHHHHHHH
Q psy12587 271 SPSDAAKISLFKFCHCIIYT---PSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES---NEEAFAKAMKK 344 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~p---s~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~---~~~~l~~~i~~ 344 (390)
+++.+.+..+-+....++-. |...|.|-.+.|.++-..|+..-..|-...+-+.+..-.+.+. +++++++.+.+
T Consensus 231 PiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v~~ 310 (312)
T COG3958 231 PIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENGPTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARVLE 310 (312)
T ss_pred CCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcCCcceEEecCCchhccccchHHHHHHhCCCHHHHHHHHHh
Confidence 23334333444444433332 4467889999999998888655554444333333333333332 77777777665
Q ss_pred H
Q psy12587 345 I 345 (390)
Q Consensus 345 l 345 (390)
+
T Consensus 311 ~ 311 (312)
T COG3958 311 L 311 (312)
T ss_pred h
Confidence 4
No 307
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=41.96 E-value=94 Score=25.31 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCC
Q psy12587 189 LPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYD 240 (390)
Q Consensus 189 l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~ 240 (390)
++.++...|.+.|........+.+++.+.++.++... ..++++|+.+
T Consensus 132 i~~~~ivaist~g~~~~~~~~~~f~~Gl~em~~rl~P-----~~ilvyG~~~ 178 (200)
T PF14386_consen 132 IPKGSIVAISTNGCINNKEDKKLFLDGLREMLKRLRP-----KHILVYGGMP 178 (200)
T ss_pred cccCCEEEEEEecccCCHHHHHHHHHHHHHHHhccCC-----CeEEEECCch
Confidence 4555556667777555555678888888888887753 8899999543
No 308
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=41.72 E-value=16 Score=24.51 Aligned_cols=22 Identities=14% Similarity=-0.023 Sum_probs=17.8
Q ss_pred cchhhhHhh-HhhhhcCCceeec
Q psy12587 4 ATARLTITA-TAWGATGPRTTAH 25 (390)
Q Consensus 4 G~~~~~~~l-~~L~~~G~~V~~~ 25 (390)
|.|.-+.++ ++|+++||+|.-+
T Consensus 5 AVE~~Ls~v~~~L~~~GyeVv~l 27 (80)
T PF03698_consen 5 AVEEGLSNVKEALREKGYEVVDL 27 (80)
T ss_pred EecCCchHHHHHHHHCCCEEEec
Confidence 455667788 9999999998776
No 309
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=41.65 E-value=14 Score=22.74 Aligned_cols=41 Identities=22% Similarity=0.133 Sum_probs=12.6
Q ss_pred hhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHH
Q psy12587 303 AMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMK 343 (390)
Q Consensus 303 a~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~ 343 (390)
|...|+|+++..-.-..+.|....+-+-.+. ++++|.++|.
T Consensus 11 A~~~~lp~~~gSDAH~~~~vG~~~t~~~~~~~s~~~l~~alr 52 (56)
T PF13263_consen 11 AEKYGLPFTGGSDAHFLEEVGRGYTEFEGPIRSPEELLEALR 52 (56)
T ss_dssp HHHTT--EEEE--BSSGGGTTTTHHHH---------------
T ss_pred HHHcCCCeEeEEcccChhhcCCEeeecccccccccccccccc
Confidence 5668999999554444555533322221222 5677776664
No 310
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=41.64 E-value=24 Score=27.25 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCCCcEEEecCCC--hHHHHHHHHhcceEEeCCC--------CCCCCc--cHHhhhhcCCCEEEecCC
Q psy12587 249 YYKELGVLVKKLKLSDNVLFLTSPS--DAAKISLFKFCHCIIYTPS--------NEHFGI--VPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 249 y~~~~~~~~~~~~l~~~v~~~g~~~--~~e~~~~~~~adv~v~ps~--------~e~~~~--~~~Ea~a~G~pvi~~~~~ 316 (390)
|.+++++..+++|+. +..+...+ .+++.+.+..||++++..= +...++ .+-|+...|.|++.+..|
T Consensus 1 y~~~~~~~f~~~g~~--v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAG 78 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFE--VDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAG 78 (154)
T ss_dssp HHHHHHHHHHHCT-E--EEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHH
T ss_pred CHHHHHHHHHHCCCE--EEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChH
Confidence 567788888888874 65555443 5678899999998877421 222232 466788899999887654
No 311
>KOG2619|consensus
Probab=41.52 E-value=53 Score=29.56 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=48.0
Q ss_pred HHHHHHHhcceEEeC--CCCCCC-CccHHhhhhcC-CCEEEecCCCcccceecCcceeeecC--CHHHHHHHHHHHhcCC
Q psy12587 276 AKISLFKFCHCIIYT--PSNEHF-GIVPIEAMFCK-RPVIAVNSGGPKESVVDGRTGFLCES--NEEAFAKAMKKIVDND 349 (390)
Q Consensus 276 e~~~~~~~adv~v~p--s~~e~~-~~~~~Ea~a~G-~pvi~~~~~~~~e~i~~~~~g~~~~~--~~~~l~~~i~~l~~~~ 349 (390)
++...++....+|.- |..+-+ .=++.-|+-.| +|||... +...+++. ...-+.+++ ++++|++-|+++-+|+
T Consensus 243 ~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~-~n~e~fvP-~~SfI~vdDF~s~~ela~ylk~L~~n~ 320 (372)
T KOG2619|consen 243 CLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGP-PNYENFVP-PDSFIHVDDFQSPQELAAYLKKLDKNP 320 (372)
T ss_pred cceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECC-ccccccCC-CcceEehhhcCCHHHHHHHHHHhhcCH
Confidence 334455555555542 222211 22455667777 6666665 66666665 345555666 9999999999999998
Q ss_pred hhHHHHH
Q psy12587 350 GNIIQQF 356 (390)
Q Consensus 350 ~~~~~~~ 356 (390)
. .+.+.
T Consensus 321 ~-~Y~~Y 326 (372)
T KOG2619|consen 321 A-AYLSY 326 (372)
T ss_pred H-HHHHH
Confidence 8 55544
No 312
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=41.41 E-value=2.7e+02 Score=25.11 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=65.5
Q ss_pred EEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCc------chhHHHHHHHHHHHHcCCCCcEEEe
Q psy12587 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNI------ENVEYYKELGVLVKKLKLSDNVLFL 269 (390)
Q Consensus 196 ~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~------~~~~y~~~~~~~~~~~~l~~~v~~~ 269 (390)
.++.+|- ..-.+-+.+++.++.+++.. .++.--|...+++. .+.+=.+.+.+..++.|++ .+.
T Consensus 102 l~vIAGP-CsIEs~eq~l~~A~~lk~~g-------~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~---~~t 170 (352)
T PRK13396 102 VVVVAGP-CSVENEEMIVETAKRVKAAG-------AKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLG---IIT 170 (352)
T ss_pred EEEEEeC-CcccCHHHHHHHHHHHHHcC-------CCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCc---EEE
Confidence 3455553 33346688888888888763 55655554444322 1234446677777888874 233
Q ss_pred cCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhh-hcCCCEEEecC
Q psy12587 270 TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAM-FCKRPVIAVNS 315 (390)
Q Consensus 270 g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~-a~G~pvi~~~~ 315 (390)
...+..++..+...+|++-.++.. .....+++++ ..|+||+.+..
T Consensus 171 ev~d~~~v~~~~~~~d~lqIga~~-~~n~~LL~~va~t~kPVllk~G 216 (352)
T PRK13396 171 EVMDAADLEKIAEVADVIQVGARN-MQNFSLLKKVGAQDKPVLLKRG 216 (352)
T ss_pred eeCCHHHHHHHHhhCCeEEECccc-ccCHHHHHHHHccCCeEEEeCC
Confidence 334455554555668999988863 2224456655 58999999763
No 313
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=41.38 E-value=3.2e+02 Score=26.03 Aligned_cols=123 Identities=13% Similarity=0.133 Sum_probs=72.8
Q ss_pred cccccCCHHHHHHHHHHHHhhcccccccceEEEE--EcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHH
Q psy12587 202 RYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVV--AGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAA 276 (390)
Q Consensus 202 ~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i--~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e 276 (390)
.++.-.++...++++++.... ++..| .++ + .+..+|+.++-+.+.+.|. +.|.+ .|-....+
T Consensus 119 ~lndv~nl~~ai~~vk~ag~~--------~~~~i~yt~s-p---~~t~e~~~~~a~~l~~~Ga-d~I~IkDtaGll~P~~ 185 (499)
T PRK12330 119 ALNDPRNLEHAMKAVKKVGKH--------AQGTICYTVS-P---IHTVEGFVEQAKRLLDMGA-DSICIKDMAALLKPQP 185 (499)
T ss_pred cCChHHHHHHHHHHHHHhCCe--------EEEEEEEecC-C---CCCHHHHHHHHHHHHHcCC-CEEEeCCCccCCCHHH
Confidence 344445666666666655442 32332 222 1 2345777777777778885 66666 46677766
Q ss_pred HHHHHHhc------ceEEeCCCCCCCCc---cHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHH
Q psy12587 277 KISLFKFC------HCIIYTPSNEHFGI---VPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKI 345 (390)
Q Consensus 277 ~~~~~~~a------dv~v~ps~~e~~~~---~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l 345 (390)
+.++++.. ++-+.--....+|+ ..+.|+.+|+-+|-+..+|+++-- |- +..++++.++...
T Consensus 186 ~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~~a-----Gn---~atE~vv~~L~~~ 255 (499)
T PRK12330 186 AYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGP-----GH---NPTESLVEMLEGT 255 (499)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccccccc-----cc---hhHHHHHHHHHhc
Confidence 65555542 33332223445555 368899999999999988885532 11 1567777776653
No 314
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=40.67 E-value=1.6e+02 Score=26.58 Aligned_cols=73 Identities=8% Similarity=0.024 Sum_probs=40.7
Q ss_pred cCCChHHHHHHHHhcceEEeC---CCCCCCCccHHhhhhcC------CCEEEe---cCC-CcccceecCcceeeecCCHH
Q psy12587 270 TSPSDAAKISLFKFCHCIIYT---PSNEHFGIVPIEAMFCK------RPVIAV---NSG-GPKESVVDGRTGFLCESNEE 336 (390)
Q Consensus 270 g~~~~~e~~~~~~~adv~v~p---s~~e~~~~~~~Ea~a~G------~pvi~~---~~~-~~~e~i~~~~~g~~~~~~~~ 336 (390)
-+++.+.+.+..+..+.++.- ...-|+|-.+.|.++-. .|+.-- |.. ...+.+++ ..++ +++
T Consensus 266 kPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le~----~~~p-~~~ 340 (356)
T PLN02683 266 RPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLER----LALP-QVE 340 (356)
T ss_pred CccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHHH----hhCC-CHH
Confidence 345666667777777655543 22346777777766543 355432 211 11112211 2334 889
Q ss_pred HHHHHHHHHhc
Q psy12587 337 AFAKAMKKIVD 347 (390)
Q Consensus 337 ~l~~~i~~l~~ 347 (390)
.+.+++.++++
T Consensus 341 ~i~~a~~~~~~ 351 (356)
T PLN02683 341 DIVRAAKRACY 351 (356)
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 315
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=40.54 E-value=1.4e+02 Score=26.48 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=38.6
Q ss_pred CCChHHHHHHHHhcceEEeC---CCCCCCCccHHhhhhcC------CCEEEecCCCccccee-cCcceeeecCCHHHHHH
Q psy12587 271 SPSDAAKISLFKFCHCIIYT---PSNEHFGIVPIEAMFCK------RPVIAVNSGGPKESVV-DGRTGFLCESNEEAFAK 340 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~p---s~~e~~~~~~~Ea~a~G------~pvi~~~~~~~~e~i~-~~~~g~~~~~~~~~l~~ 340 (390)
+++.+.+.+..+....++.- +..-|+|-.+.|.++-. .|+..-.... .++. .+..-.++-.|.+.+++
T Consensus 240 PlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d--~~~~~~~~~~~~~gl~~~~I~~ 317 (327)
T CHL00144 240 PLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQD--VPTPYNGPLEEATVIQPAQIIE 317 (327)
T ss_pred CCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCC--CcCCCCccHHHHhCCCHHHHHH
Confidence 45555555666666544432 22456666777666433 3554432211 1111 11111112228899999
Q ss_pred HHHHHhcCC
Q psy12587 341 AMKKIVDND 349 (390)
Q Consensus 341 ~i~~l~~~~ 349 (390)
++.+++++.
T Consensus 318 ~i~~~l~~~ 326 (327)
T CHL00144 318 AVEQIITNK 326 (327)
T ss_pred HHHHHHhcc
Confidence 999887653
No 316
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=40.49 E-value=54 Score=27.95 Aligned_cols=41 Identities=12% Similarity=-0.003 Sum_probs=28.7
Q ss_pred HHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC
Q psy12587 276 AKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 276 e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~ 316 (390)
++.+++..+|+++..+..+...-.+..|+..|+|+|....+
T Consensus 53 dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 53 DLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred CHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 34556678999886665444444567789999999987544
No 317
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=40.13 E-value=3.1e+02 Score=25.47 Aligned_cols=171 Identities=7% Similarity=-0.018 Sum_probs=89.4
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCC-CceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccc---ccCC
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDH-KCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYE---RKKN 208 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~---~~K~ 208 (390)
+...|.|+-..+...+.+.+.....++ +-+.|+...+ .+..-..-....++.-. ..+-+++.+....+. ...|
T Consensus 73 l~E~dvVfGg~~kL~~~I~~~~~~~~p~~~I~V~tTC~-~~iIGdDi~~v~~~~~~--~~~~pvi~v~t~gf~g~s~~~G 149 (421)
T cd01976 73 FQEKDIVFGGDKKLAKAIDEAYELFPLNKGISVQSECP-VGLIGDDIEAVARKASK--ELGIPVVPVRCEGFRGVSQSLG 149 (421)
T ss_pred CCccceecCCHHHHHHHHHHHHHhCCCccEEEEECCCh-HHHhccCHHHHHHHHHH--hhCCCEEEEeCCCccCCcccHH
Confidence 556677777777777777776655533 3345544433 22222111111111000 011233333333332 2235
Q ss_pred HHHHHHHHHH-HHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceE
Q psy12587 209 LELAIYSLNS-LRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCI 287 (390)
Q Consensus 209 ~~~ll~a~~~-l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~ 287 (390)
.+...+++.+ +....+.....+-.+.|+|..... .-..+++++.+++|+..+..+.|..+-+|+ .-+..|.+-
T Consensus 150 ~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~-----~d~~el~~lL~~~Gi~v~~~~~~~~t~eei-~~~~~A~ln 223 (421)
T cd01976 150 HHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIG-----GDAWASRILLEEMGLRVVAQWSGDGTLNEM-ENAHKAKLN 223 (421)
T ss_pred HHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCC-----ccHHHHHHHHHHcCCeEEEEeCCCCCHHHH-HhcccCCEE
Confidence 6665555553 221110000012467777854322 111679999999999877778888888875 457777776
Q ss_pred EeCCCCCCCCccHHhhhh--cCCCEEEec
Q psy12587 288 IYTPSNEHFGIVPIEAMF--CKRPVIAVN 314 (390)
Q Consensus 288 v~ps~~e~~~~~~~Ea~a--~G~pvi~~~ 314 (390)
+..+... +..+.|.|. +|+|-+..+
T Consensus 224 iv~~~~~--~~~~a~~Le~~fGiP~~~~~ 250 (421)
T cd01976 224 LIHCYRS--MNYIARMMEEKYGIPWMEYN 250 (421)
T ss_pred EEECcHH--HHHHHHHHHHHhCCcEEecc
Confidence 6544322 124556663 899998853
No 318
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=40.04 E-value=3.5e+02 Score=25.99 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhh--cCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMF--CKR 308 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a--~G~ 308 (390)
-.+.|+|....... +..-..+++++.+.+|+.-|..+.+..+-+++ .-+.+|++-|+.+.. +|..+.|+|. +|+
T Consensus 164 ~~VNIIG~~~l~f~-~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di-~~~~~A~~NIvl~~~--~g~~~A~~Le~~fgi 239 (513)
T CHL00076 164 PSVNIIGIFTLGFH-NQHDCRELKRLLQDLGIEINQIIPEGGSVEDL-KNLPKAWFNIVPYRE--VGLMTAKYLEKEFGM 239 (513)
T ss_pred CcEEEEecCCCCCC-CcchHHHHHHHHHHCCCeEEEEECCCCCHHHH-HhcccCcEEEEechh--hhHHHHHHHHHHhCC
Confidence 46788875432111 11123889999999999888888877777775 447788877766443 5667777775 799
Q ss_pred CEEEe
Q psy12587 309 PVIAV 313 (390)
Q Consensus 309 pvi~~ 313 (390)
|.+..
T Consensus 240 P~i~~ 244 (513)
T CHL00076 240 PYIST 244 (513)
T ss_pred CeEee
Confidence 98763
No 319
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=39.91 E-value=1.8e+02 Score=27.37 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc--ceEEeCCC-CCCCCccHHhhhh---cCCCEEE-ecCCCc---cc
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC--HCIIYTPS-NEHFGIVPIEAMF---CKRPVIA-VNSGGP---KE 320 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a--dv~v~ps~-~e~~~~~~~Ea~a---~G~pvi~-~~~~~~---~e 320 (390)
..+.......|. .|... -+-.+....+... |++++--. .+.-|+.+++.+. -++|||. |..+.. .+
T Consensus 18 ~~l~~~L~~~G~--~v~~a--~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~ 93 (464)
T COG2204 18 ELLEQALELAGY--EVVTA--ESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVE 93 (464)
T ss_pred HHHHHHHHHcCC--eEEEe--CCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHH
Confidence 455555555553 23332 3444445666655 55555433 3556677766554 4799988 444443 44
Q ss_pred ceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 321 SVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 321 ~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
-++.|...++..| +++.+...+.+.++...
T Consensus 94 A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 94 ALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred HHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 4566777888999 99999999999987654
No 320
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=39.72 E-value=2.2e+02 Score=24.94 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=52.0
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhcCC-CEEE-ecCCCccccee---c--CcceeeecC-CHHHHHHHHHHHhc-
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKR-PVIA-VNSGGPKESVV---D--GRTGFLCES-NEEAFAKAMKKIVD- 347 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~-pvi~-~~~~~~~e~i~---~--~~~g~~~~~-~~~~l~~~i~~l~~- 347 (390)
..-++.||+++.-.. .|+|-..+++.+.... ++|. ++.-.....-. + .....+.++ +...+++.|.+.+.
T Consensus 76 i~~i~~ADliv~nG~~le~w~~k~~~~~~~~~~~~i~~s~~i~~~~~~~~~~~g~~dpH~Wldp~na~~~v~~I~~~L~~ 155 (303)
T COG0803 76 IAKLRKADLIVYNGLGLEPWLEKLLESADKKKVLVIEVSDGIELLPLPGEEEEGVNDPHVWLDPKNAKIYAENIADALVE 155 (303)
T ss_pred HHHHHhCCEEEEcCCChHHHHHHHHHhcccCCceEEEccCCccccCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHH
Confidence 578899999887654 5666667776665543 3333 22211111111 1 235566777 77777777777665
Q ss_pred -CChhHHHHHHHHHHHHHh
Q psy12587 348 -NDGNIIQQFSQFGFNRFN 365 (390)
Q Consensus 348 -~~~~~~~~~~~~~~~~~~ 365 (390)
+|+ ......+|+.++..
T Consensus 156 ~dP~-~~~~y~~N~~~y~~ 173 (303)
T COG0803 156 LDPE-NKETYEKNAEAYLK 173 (303)
T ss_pred hCcc-cHHHHHHHHHHHHH
Confidence 677 66666677766653
No 321
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=39.60 E-value=1.8e+02 Score=22.56 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCccc-----ceecCcceeeecC--CHHHHHHHHHHHhc
Q psy12587 280 LFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKE-----SVVDGRTGFLCES--NEEAFAKAMKKIVD 347 (390)
Q Consensus 280 ~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e-----~i~~~~~g~~~~~--~~~~l~~~i~~l~~ 347 (390)
-+..+|+++..+..+.....+.+....+.||-..+.+...+ .+..+..-+-+.. ..-.+++.|.+-++
T Consensus 67 dl~~a~lViaaT~d~e~N~~i~~~a~~~~~vn~~d~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~ie 141 (157)
T PRK06719 67 DIKDAHLIYAATNQHAVNMMVKQAAHDFQWVNVVSDGTESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQELT 141 (157)
T ss_pred cCCCceEEEECCCCHHHHHHHHHHHHHCCcEEECCCCCcCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHHH
Confidence 46788988887665544555544443455665544443333 3333433333332 33445555554443
No 322
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=39.47 E-value=2.3e+02 Score=23.89 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=73.3
Q ss_pred EEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC--CC
Q psy12587 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS--PS 273 (390)
Q Consensus 196 ~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~--~~ 273 (390)
.++++|-+--.-|...+-+-+..++.++. +.|+|+.........+ ..++.-+...+.|. + +.-+|. -+
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~kyk------~dfvI~N~ENaa~G~G--it~k~y~~l~~~G~-d-viT~GNH~wd 71 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKYK------IDFVIVNGENAAGGFG--ITEKIYKELLEAGA-D-VITLGNHTWD 71 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhhc------CcEEEEcCccccCCcC--CCHHHHHHHHHhCC-C-EEeccccccc
Confidence 57888988877888999999999988864 7889987644321111 11444445556665 3 444555 35
Q ss_pred hHHHHHHHHhcceEEeCCCC----CCCCccHHhhhhcCCCEEEecCCC
Q psy12587 274 DAAKISLFKFCHCIIYTPSN----EHFGIVPIEAMFCKRPVIAVNSGG 317 (390)
Q Consensus 274 ~~e~~~~~~~adv~v~ps~~----e~~~~~~~Ea~a~G~pvi~~~~~~ 317 (390)
+.|+.+++...+.++=|..+ .|.|..+++ ..|.-+-+++.-|
T Consensus 72 ~~ei~~~i~~~~~ilRP~N~p~~~~G~G~~~f~--~ng~ki~V~Nl~G 117 (266)
T COG1692 72 QKEILDFIDNADRILRPANYPDGTPGKGSRIFK--INGKKLAVINLMG 117 (266)
T ss_pred chHHHHHhhcccceeccCCCCCCCCcceEEEEE--eCCcEEEEEEeec
Confidence 67888999999999988763 345555665 5566666666533
No 323
>KOG2741|consensus
Probab=39.42 E-value=1.8e+02 Score=25.93 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=56.7
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
..++++++|--. --..++.++..+++. +..++-+-+... +.-++.+++++++ +...+|
T Consensus 5 ~~ir~Gi~g~g~---ia~~f~~al~~~p~s-------~~~Ivava~~s~---------~~A~~fAq~~~~~-~~k~y~-- 62 (351)
T KOG2741|consen 5 ATIRWGIVGAGR---IARDFVRALHTLPES-------NHQIVAVADPSL---------ERAKEFAQRHNIP-NPKAYG-- 62 (351)
T ss_pred ceeEEEEeehhH---HHHHHHHHhccCccc-------CcEEEEEecccH---------HHHHHHHHhcCCC-CCcccc--
Confidence 345555555321 225566777666653 244444443322 7788899999986 566655
Q ss_pred ChHHHHHHHHhc--ceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 273 SDAAKISLFKFC--HCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 273 ~~~e~~~~~~~a--dv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
+++ ++.+.. |++..++..-.---.++-++..|++|++
T Consensus 63 syE---eLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~ 101 (351)
T KOG2741|consen 63 SYE---ELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLC 101 (351)
T ss_pred CHH---HHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEe
Confidence 455 456655 7777665432222356678999999887
No 324
>PLN02285 methionyl-tRNA formyltransferase
Probab=39.13 E-value=2e+02 Score=25.73 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCCCcEEEe-cCCChHHHHHHHH--hcceEEeCC
Q psy12587 252 ELGVLVKKLKLSDNVLFL-TSPSDAAKISLFK--FCHCIIYTP 291 (390)
Q Consensus 252 ~~~~~~~~~~l~~~v~~~-g~~~~~e~~~~~~--~adv~v~ps 291 (390)
.+++.+.+.|++..+.+. ....++++.+.+. +.|++|+.+
T Consensus 59 pv~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~ 101 (334)
T PLN02285 59 PVAQLALDRGFPPDLIFTPEKAGEEDFLSALRELQPDLCITAA 101 (334)
T ss_pred HHHHHHHHcCCCcceecCccccCCHHHHHHHHhhCCCEEEhhH
Confidence 367788888876443332 2333444444444 466666543
No 325
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=39.10 E-value=3.2e+02 Score=25.37 Aligned_cols=172 Identities=11% Similarity=0.084 Sum_probs=88.5
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCC--CCCeEEEEeeccc--ccCC
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPG--KEDIVFLSINRYE--RKKN 208 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~i~~~g~~~--~~K~ 208 (390)
+...|.|+-..+...+.+.+.....+++-+.|+..++. +..-..-....++...+.|. +-+++.+....+. ...|
T Consensus 56 l~E~d~V~Gg~~~L~~~i~~~~~~~~p~~I~v~~tC~~-~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G 134 (428)
T cd01965 56 MTEDAAVFGGEDNLIEALKNLLSRYKPDVIGVLTTCLT-ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETG 134 (428)
T ss_pred CCCCCeeECcHHHHHHHHHHHHHhcCCCEEEEECCcch-hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHH
Confidence 45567777666777777776655443444555554432 22221111111111000011 1222222222232 3467
Q ss_pred HHHHHHHHHH-HHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe------------------
Q psy12587 209 LELAIYSLNS-LRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL------------------ 269 (390)
Q Consensus 209 ~~~ll~a~~~-l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~------------------ 269 (390)
.+..++++-+ +..... ...+-.+.++|...... .-..+++++.++.|++.+..+.
T Consensus 135 ~~~a~~al~~~~~~~~~--~~~~~~VNlig~~~~~~----~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~ 208 (428)
T cd01965 135 YDNAVKAIIEQLAKPSE--VKKNGKVNLLPGFPLTP----GDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTK 208 (428)
T ss_pred HHHHHHHHHHHHhcccC--CCCCCeEEEECCCCCCc----cCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCC
Confidence 7777777654 322110 00134677777654321 1238999999999997666552
Q ss_pred cCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhh--cCCCEEEec
Q psy12587 270 TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMF--CKRPVIAVN 314 (390)
Q Consensus 270 g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a--~G~pvi~~~ 314 (390)
|..+-+++ .-+.+|.+.+..+. .++..+.++|. +|+|-+..+
T Consensus 209 gg~~~e~i-~~~~~A~lniv~~~--~~~~~~a~~L~e~~GiP~~~~~ 252 (428)
T cd01965 209 GGTTLEEI-RDAGNAKATIALGE--YSGRKAAKALEEKFGVPYILFP 252 (428)
T ss_pred CCCcHHHH-HHhccCcEEEEECh--hhhHHHHHHHHHHHCCCeeecC
Confidence 34555664 34666666554332 24566677665 899998765
No 326
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=39.07 E-value=3e+02 Score=24.96 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc-
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC- 284 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a- 284 (390)
++.+.++++..++.+.. +.+.+... .+.+.+|..++-+.+.+.|. +.|.+ .|...+.++.++++..
T Consensus 111 ~~~~~~~i~~ak~~G~~-----v~~~~eda----~r~~~~~l~~~~~~~~~~g~-~~i~l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 111 LEKAVEAVEYAKEHGLI-----VEFSAEDA----TRTDIDFLIKVFKRAEEAGA-DRINIADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred HHHHHHHHHHHHHcCCE-----EEEEEeec----CCCCHHHHHHHHHHHHhCCC-CEEEEeCCCCccCHHHHHHHHHHHh
Confidence 45566677766665432 44433221 22345666777777777775 56666 4666777776666653
Q ss_pred ---c--eEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCccc
Q psy12587 285 ---H--CIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKE 320 (390)
Q Consensus 285 ---d--v~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e 320 (390)
+ +-++. ...+|+. .++|+.+|.-.|-+...|+.+
T Consensus 181 ~~~~~~l~~H~--Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe 222 (363)
T TIGR02090 181 ENVKLPISVHC--HNDFGLATANSIAGVKAGAEQVHVTVNGIGE 222 (363)
T ss_pred cccCceEEEEe--cCCCChHHHHHHHHHHCCCCEEEEEeecccc
Confidence 2 22332 3445553 588999999999988888775
No 327
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=38.96 E-value=2.3e+02 Score=24.24 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=54.3
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS- 271 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~- 271 (390)
-+++++..-+...++|++.+++.+++.. +.=+++-+-+. +..+.+.+.++++|+ +.|.+...
T Consensus 95 ~Pivlm~Y~Npi~~~Gie~F~~~~~~~G----------vdGlivpDLP~------ee~~~~~~~~~~~gi-~~I~lvaPt 157 (265)
T COG0159 95 VPIVLMTYYNPIFNYGIEKFLRRAKEAG----------VDGLLVPDLPP------EESDELLKAAEKHGI-DPIFLVAPT 157 (265)
T ss_pred CCEEEEEeccHHHHhhHHHHHHHHHHcC----------CCEEEeCCCCh------HHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 3566666667677889999877776542 44556666655 333778899999998 45666544
Q ss_pred CChHHHHHHHHhcceEEe
Q psy12587 272 PSDAAKISLFKFCHCIIY 289 (390)
Q Consensus 272 ~~~~e~~~~~~~adv~v~ 289 (390)
.+++.+..+.+.++-|+.
T Consensus 158 t~~~rl~~i~~~a~GFiY 175 (265)
T COG0159 158 TPDERLKKIAEAASGFIY 175 (265)
T ss_pred CCHHHHHHHHHhCCCcEE
Confidence 566777777778865544
No 328
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=38.54 E-value=3.2e+02 Score=25.11 Aligned_cols=95 Identities=8% Similarity=0.030 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcc
Q psy12587 206 KKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCH 285 (390)
Q Consensus 206 ~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad 285 (390)
.+|.+.+++++-....+.+. .+-.+.++|..+.. ...+++++.+++|+.-+..+ ..-+.+++... ..+.
T Consensus 134 ~~G~~~~~~alv~~~~~~~~---~~~~VnliG~~~~~------d~~el~~lL~~~Gi~v~~~~-~d~~~~~~~~~-~~a~ 202 (396)
T cd01979 134 TQGEDTVLAALVPRCPEKPS---PERSLVLVGSLPDI------VEDQLRRELEQLGIPVVGFL-PPRRYTDLPVI-GPGT 202 (396)
T ss_pred HHHHHHHHHHHhhhcccccC---CCCceEEEEeCCcc------hHHHHHHHHHHcCCeEEEEe-CCCChHHhhcc-Ccce
Confidence 45677777777654322110 12456888975442 14789999999998653333 33334443222 2233
Q ss_pred eEEeCCCCCCCCccHHhhhh--cCCCEEEec
Q psy12587 286 CIIYTPSNEHFGIVPIEAMF--CKRPVIAVN 314 (390)
Q Consensus 286 v~v~ps~~e~~~~~~~Ea~a--~G~pvi~~~ 314 (390)
+.+..+. +.....++|. +|+|.+..+
T Consensus 203 ~~~~~~~---~~~~~A~~Le~r~giP~~~~~ 230 (396)
T cd01979 203 YVLGIQP---FLSRTATTLMRRRKCKLLSAP 230 (396)
T ss_pred EEEEeCh---hHHHHHHHHHHhcCCCcccCC
Confidence 3332111 2234566664 788887644
No 329
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=38.16 E-value=3.5e+02 Score=25.47 Aligned_cols=169 Identities=13% Similarity=0.086 Sum_probs=84.0
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchh---hhcC-CCCCCCCeEEEEee--cc--c
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIE---NVLN-PLPGKEDIVFLSIN--RY--E 204 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~-~l~~~~~~~i~~~g--~~--~ 204 (390)
+...|.|+--.+...+.+.+.....+..++.++..++-.+..-..-....+ +.++ +.+. ....++.+. .+ +
T Consensus 61 l~E~d~VfGG~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~-~~~~vi~v~tpgF~Gs 139 (454)
T cd01973 61 LHEDSAVFGGAKRVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPD-REVHLIPVHTPSFKGS 139 (454)
T ss_pred CCCCceEECcHHHHHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCC-CCCeEEEeeCCCcCCC
Confidence 445567777777777777776554421233333333322222211111111 1000 0122 122233332 22 2
Q ss_pred ccCCHHHHHHHHHH-HHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---------------
Q psy12587 205 RKKNLELAIYSLNS-LRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF--------------- 268 (390)
Q Consensus 205 ~~K~~~~ll~a~~~-l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~--------------- 268 (390)
...|.+..++++-+ +..... .+-.+.|+|.... ..-..+++++.+..|+.-++.+
T Consensus 140 ~~~G~~~a~~ali~~~~~~~~----~~~~VNii~~~~~-----~~D~~ei~~lL~~~Gl~v~~~~d~~~~d~~~~~~~~~ 210 (454)
T cd01973 140 MVTGYDEAVRSVVKTIAKKGA----PSGKLNVFTGWVN-----PGDVVELKHYLSEMDVEANILMDTEDFDSPMLPDKSA 210 (454)
T ss_pred HHHHHHHHHHHHHHHhcccCC----CCCcEEEECCCCC-----hHHHHHHHHHHHHcCCCEEEeeccccccCCCCCcccc
Confidence 34578888777754 322111 1235667764321 1223899999999999766553
Q ss_pred --ecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhh--cCCCEEEec
Q psy12587 269 --LTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMF--CKRPVIAVN 314 (390)
Q Consensus 269 --~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a--~G~pvi~~~ 314 (390)
.|..+-+++ .-+.+|.+-+..+.. .+..+.++|. +|+|.+..+
T Consensus 211 ~~~g~~~~~~i-~~~~~A~~niv~~~~--~~~~~A~~Le~~fGiPyi~~~ 257 (454)
T cd01973 211 VTHGNTTIEDI-ADSANAIATIALARY--EGGKAAEFLQKKFDVPAILGP 257 (454)
T ss_pred cCCCCCCHHHH-HHhhhCcEEEEEChh--hhHHHHHHHHHHHCCCeeccC
Confidence 234444554 445555555543332 3456666665 799988643
No 330
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=37.74 E-value=1.7e+02 Score=26.09 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhh-cCCCEEEecC
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMF-CKRPVIAVNS 315 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~ 315 (390)
..+.+.++++|+. .+.-..+... .+++.. .+++=.+| .+-....++++++ .|+|||.|..
T Consensus 79 ~~L~~~~~~~Gi~---~~stpfd~~s-vd~l~~~~v~~~KIaS-~~~~n~pLL~~~A~~gkPvilStG 141 (329)
T TIGR03569 79 RELKEYCESKGIE---FLSTPFDLES-ADFLEDLGVPRFKIPS-GEITNAPLLKKIARFGKPVILSTG 141 (329)
T ss_pred HHHHHHHHHhCCc---EEEEeCCHHH-HHHHHhcCCCEEEECc-ccccCHHHHHHHHhcCCcEEEECC
Confidence 7788888888762 2233333333 345544 45554455 3444456676665 6888888764
No 331
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=37.70 E-value=1.6e+02 Score=24.19 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=44.5
Q ss_pred HHHHHHHH--hcceEEeC-CCCCCCCccHHhhhh-----cCCCEEE--ecCCCcccceecCcceeeecC-CHHHHHHHHH
Q psy12587 275 AAKISLFK--FCHCIIYT-PSNEHFGIVPIEAMF-----CKRPVIA--VNSGGPKESVVDGRTGFLCES-NEEAFAKAMK 343 (390)
Q Consensus 275 ~e~~~~~~--~adv~v~p-s~~e~~~~~~~Ea~a-----~G~pvi~--~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~ 343 (390)
++...++. +.|++++- ...++-|+.++..+- +.+-+|+ ++..-..+.+..|.-.+++.| ..+-|.+++.
T Consensus 36 ~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~ 115 (224)
T COG4565 36 EEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALT 115 (224)
T ss_pred HHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHH
Confidence 33344444 45665554 335667777665554 3333444 233445666666777888988 8888888887
Q ss_pred HHhc
Q psy12587 344 KIVD 347 (390)
Q Consensus 344 ~l~~ 347 (390)
+...
T Consensus 116 ~y~~ 119 (224)
T COG4565 116 RYRQ 119 (224)
T ss_pred HHHH
Confidence 7643
No 332
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=37.67 E-value=23 Score=21.90 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=13.4
Q ss_pred cHHhhhhcCCCEEEe
Q psy12587 299 VPIEAMFCKRPVIAV 313 (390)
Q Consensus 299 ~~~Ea~a~G~pvi~~ 313 (390)
.+.|++..|.||++-
T Consensus 16 kI~esav~G~pVvAL 30 (58)
T PF11238_consen 16 KIAESAVMGTPVVAL 30 (58)
T ss_pred HHHHHHhcCceeEee
Confidence 589999999999984
No 333
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=37.61 E-value=2.1e+02 Score=24.75 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=45.1
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhc-CCCEEEecCCCcccc--e----------e----cCcceeeecC-CHHHH
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFC-KRPVIAVNSGGPKES--V----------V----DGRTGFLCES-NEEAF 338 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~-G~pvi~~~~~~~~e~--i----------~----~~~~g~~~~~-~~~~l 338 (390)
..-+++||+++.-.. .|+|-..++++... +.++|... .+..-+ . . ..+.-++.++ +...+
T Consensus 47 ~~~l~~Adliv~~G~~~e~w~~k~~~~~~~~~~~~v~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~ 125 (282)
T cd01017 47 IARIADADVFVYNGLGMETWAEKVLKSLQNKKLKVVEAS-KGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVLAIQQ 125 (282)
T ss_pred HHHHHhCCEEEEcCcchHHHHHHHHHhcccCCceEEECC-CCccccccccccccccccccccCCCCCCccccCHHHHHHH
Confidence 567888888876542 45555566665432 23333321 111100 0 0 0123456666 77777
Q ss_pred HHHHHHHhc--CChhHHHHHHHHHHHHH
Q psy12587 339 AKAMKKIVD--NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 339 ~~~i~~l~~--~~~~~~~~~~~~~~~~~ 364 (390)
++.|.+.+. +|+ ......+|+.++.
T Consensus 126 a~~Ia~~L~~~dP~-~~~~y~~N~~~~~ 152 (282)
T cd01017 126 VENIKDALIKLDPD-NKEYYEKNAAAYA 152 (282)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 888777665 565 5555556665554
No 334
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.53 E-value=1.8e+02 Score=21.85 Aligned_cols=96 Identities=13% Similarity=0.013 Sum_probs=44.9
Q ss_pred CceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCC
Q psy12587 160 KCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGY 239 (390)
Q Consensus 160 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~ 239 (390)
.-..|+..|.+.+.-. ...... . .+.-+++..+..... .+.+-+.++.++++..+ ++. +++|+.
T Consensus 29 ~GfeVi~lg~~~s~e~-----~v~aa~---e-~~adii~iSsl~~~~--~~~~~~~~~~L~~~g~~----~i~-vivGG~ 92 (132)
T TIGR00640 29 LGFDVDVGPLFQTPEE-----IARQAV---E-ADVHVVGVSSLAGGH--LTLVPALRKELDKLGRP----DIL-VVVGGV 92 (132)
T ss_pred CCcEEEECCCCCCHHH-----HHHHHH---H-cCCCEEEEcCchhhh--HHHHHHHHHHHHhcCCC----CCE-EEEeCC
Confidence 4678888887643111 111111 1 233344444443322 34445555556665442 244 555654
Q ss_pred CCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH
Q psy12587 240 DPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK 282 (390)
Q Consensus 240 ~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~ 282 (390)
.. ++-.+..+++|+ +.+...| .+-.++.+.+.
T Consensus 93 ~~---------~~~~~~l~~~Gv-d~~~~~g-t~~~~i~~~l~ 124 (132)
T TIGR00640 93 IP---------PQDFDELKEMGV-AEIFGPG-TPIPESAIFLL 124 (132)
T ss_pred CC---------hHhHHHHHHCCC-CEEECCC-CCHHHHHHHHH
Confidence 44 333344667887 4444444 35555444443
No 335
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=37.11 E-value=3.4e+02 Score=25.06 Aligned_cols=103 Identities=16% Similarity=0.088 Sum_probs=61.9
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
.+.+.+...++.+- ..++..++++++++|+ +.+++....+. -.+...+.++-.-.+.+++.=
T Consensus 49 ~p~vWiHaaSVGEv---~a~~pLv~~l~~~~P~-----~~ilvTt~T~T----------g~e~a~~~~~~~v~h~YlP~D 110 (419)
T COG1519 49 GPLVWIHAASVGEV---LAALPLVRALRERFPD-----LRILVTTMTPT----------GAERAAALFGDSVIHQYLPLD 110 (419)
T ss_pred CCeEEEEecchhHH---HHHHHHHHHHHHhCCC-----CCEEEEecCcc----------HHHHHHHHcCCCeEEEecCcC
Confidence 56677777777654 3445555666677775 77777664442 223333344322223333322
Q ss_pred ChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 273 SDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 273 ~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
...-+..++. +.|++|+ ...|-+|+.+.|+-..|+|.+.-+
T Consensus 111 ~~~~v~rFl~~~~P~l~Ii-~EtElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 111 LPIAVRRFLRKWRPKLLII-METELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred chHHHHHHHHhcCCCEEEE-EeccccHHHHHHHHHcCCCEEEEe
Confidence 2223344544 4566664 457889999999999999998855
No 336
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=37.02 E-value=2.3e+02 Score=24.70 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=19.3
Q ss_pred CCCcchhhhHhh-HhhhhcCCceeec
Q psy12587 1 MLGATARLTITA-TAWGATGPRTTAH 25 (390)
Q Consensus 1 ~~GG~~~~~~~l-~~L~~~G~~V~~~ 25 (390)
++||=.|.+ .+ +.|.+.|++|.++
T Consensus 6 v~ggd~r~~-~~~~~l~~~g~~v~~~ 30 (287)
T TIGR02853 6 VIGGDARQL-ELIRKLEELDAKISLI 30 (287)
T ss_pred EEcccHHHH-HHHHHHHHCCCEEEEE
Confidence 357766666 66 9999999999988
No 337
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.99 E-value=1.6e+02 Score=25.45 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=36.7
Q ss_pred cEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC
Q psy12587 265 NVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 265 ~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~ 315 (390)
+|..++++++++...++..||+-+.-. --+.+-|..+|+|.+=.-.
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~VRG-----EDSFVRAq~agkPflWHIY 284 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNLVRG-----EDSFVRAQLAGKPFLWHIY 284 (370)
T ss_pred EEEEecCCcHhHHHHHHHhcccceeec-----chHHHHHHHcCCCcEEEec
Confidence 466789999999999999999877532 1367889999999987543
No 338
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=36.82 E-value=1.6e+02 Score=23.45 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=27.0
Q ss_pred HHHHHhcceEEeCCCCCCCCcc--HHhhhh------cCCCEEEecCCCc
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIV--PIEAMF------CKRPVIAVNSGGP 318 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~--~~Ea~a------~G~pvi~~~~~~~ 318 (390)
..++..||++|.-+ -|+|+- ++|++. .++|++..+..+.
T Consensus 91 ~~m~~~sda~I~lP--GG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~ 137 (178)
T TIGR00730 91 AMMAELADAFIAMP--GGFGTLEELFEVLTWAQLGIHQKPIILFNVNGH 137 (178)
T ss_pred HHHHHhCCEEEEcC--CCcchHHHHHHHHHHHHcCCCCCCEEEECCcch
Confidence 56788899887633 355553 677775 5899999886443
No 339
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=36.63 E-value=2.4e+02 Score=24.88 Aligned_cols=37 Identities=8% Similarity=-0.188 Sum_probs=23.3
Q ss_pred ceeeecC-CHHHHHHHHHHHhc--CChhHHHHHHHHHHHHH
Q psy12587 327 TGFLCES-NEEAFAKAMKKIVD--NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 327 ~g~~~~~-~~~~l~~~i~~l~~--~~~~~~~~~~~~~~~~~ 364 (390)
.-++.++ +...+++.|.+.+. +|+ ......+|+..+.
T Consensus 145 PHiWldp~~~~~~a~~I~~~L~~~dP~-~~~~y~~N~~~~~ 184 (311)
T PRK09545 145 MHIWLSPEIARATAVAIHDKLVELMPQ-SKAKLDANLKDFE 184 (311)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHH
Confidence 3455666 77777777776664 666 5556666665554
No 340
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=36.46 E-value=1.4e+02 Score=26.39 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=22.6
Q ss_pred HHHHHHHhcceEEe--CCCCCCC---CccHHhhhhcCCCEEEecCC
Q psy12587 276 AKISLFKFCHCIIY--TPSNEHF---GIVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 276 e~~~~~~~adv~v~--ps~~e~~---~~~~~Ea~a~G~pvi~~~~~ 316 (390)
++.++++.||++++ |...++- +-..++.|--|.-+|-+..|
T Consensus 189 ~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG 234 (311)
T PRK08410 189 SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRG 234 (311)
T ss_pred cHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCc
Confidence 45678888887654 3333432 33455566555555554443
No 341
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=36.36 E-value=2.1e+02 Score=24.42 Aligned_cols=37 Identities=5% Similarity=-0.022 Sum_probs=24.7
Q ss_pred ceeeecC-CHHHHHHHHHHHhc--CChhHHHHHHHHHHHHH
Q psy12587 327 TGFLCES-NEEAFAKAMKKIVD--NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 327 ~g~~~~~-~~~~l~~~i~~l~~--~~~~~~~~~~~~~~~~~ 364 (390)
..++.++ +...+++.|.+.+. +|+ ......+|+..+.
T Consensus 112 PH~Wldp~~~~~~a~~I~~~L~~~dP~-~~~~y~~N~~~~~ 151 (266)
T cd01018 112 PHIWLSPANAKIMAENIYEALAELDPQ-NATYYQANLDALL 151 (266)
T ss_pred CccCcCHHHHHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 4456666 78888888877765 566 5556666665554
No 342
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=36.00 E-value=3.3e+02 Score=24.68 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=58.1
Q ss_pred ccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHH----------HcCCCCcEEEecCCCh
Q psy12587 205 RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVK----------KLKLSDNVLFLTSPSD 274 (390)
Q Consensus 205 ~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~----------~~~l~~~v~~~g~~~~ 274 (390)
+.-.+..++++++...+ .+.+.+-.+-.. ..+..... +.| .-.+.+++++++
T Consensus 191 e~~al~~ll~~~~~~~~--------pv~lLvp~Gr~~---------~~v~~~l~~~~~~~g~~~~~g-~L~~~~LPf~~Q 252 (371)
T TIGR03837 191 ENAALPALLDALAQSGS--------PVHLLVPEGRAL---------AAVAAWLGDALLAAGDVHRRG-ALTVAVLPFVPQ 252 (371)
T ss_pred CChhHHHHHHHHHhCCC--------CeEEEecCCccH---------HHHHHHhCccccCCccccccC-ceEEEEcCCCCh
Confidence 33457888888876433 266655443322 44444331 111 125778899999
Q ss_pred HHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC
Q psy12587 275 AAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 275 ~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~ 315 (390)
++...++-.||+-++-.. =+.+=|.-+|+|.|=.-.
T Consensus 253 ~~yD~LLW~cD~NfVRGE-----DSFVRAqWAgkPfvWhIY 288 (371)
T TIGR03837 253 DDYDRLLWACDLNFVRGE-----DSFVRAQWAGKPFVWHIY 288 (371)
T ss_pred hhHHHHHHhChhcEeech-----hHHHHHHHcCCCceeecc
Confidence 999999999999775321 367889999999987543
No 343
>PRK06932 glycerate dehydrogenase; Provisional
Probab=35.98 E-value=1.3e+02 Score=26.67 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=28.2
Q ss_pred HHHHHHHhcceEEe--CCCCCC---CCccHHhhhhcCCCEEEecCCCc
Q psy12587 276 AKISLFKFCHCIIY--TPSNEH---FGIVPIEAMFCKRPVIAVNSGGP 318 (390)
Q Consensus 276 e~~~~~~~adv~v~--ps~~e~---~~~~~~Ea~a~G~pvi~~~~~~~ 318 (390)
++.++++.||++++ |...++ ++-..++.|--|.-+|-+..|+.
T Consensus 190 ~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~ 237 (314)
T PRK06932 190 PFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPL 237 (314)
T ss_pred CHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccc
Confidence 45688999998765 444444 34457777777777776665544
No 344
>PLN02825 amino-acid N-acetyltransferase
Probab=35.97 E-value=2.1e+02 Score=27.43 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=46.8
Q ss_pred CCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC
Q psy12587 192 KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS 271 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~ 271 (390)
++.++|.+-|..-...++..++.-+..+...+ ++++++-++. +++.++.++.|++...+---.
T Consensus 17 gktfVIk~gG~~l~~~~~~~l~~DialL~~lG-------i~~VlVHGgg----------pqI~~~l~~~gi~~~f~~G~R 79 (515)
T PLN02825 17 GSTFVVVISGEVVAGPHLDNILQDISLLHGLG-------IKFVLVPGTH----------VQIDKLLAERGREPKYVGAYR 79 (515)
T ss_pred CCEEEEEECchhhcCchHHHHHHHHHHHHHCC-------CCEEEEcCCC----------HHHHHHHHHcCCCceeeCCcc
Confidence 35677777777754447888888888887653 5666655443 889999999998755443233
Q ss_pred CChHHH
Q psy12587 272 PSDAAK 277 (390)
Q Consensus 272 ~~~~e~ 277 (390)
+++++.
T Consensus 80 VTd~~~ 85 (515)
T PLN02825 80 ITDSAA 85 (515)
T ss_pred cCCHHH
Confidence 666554
No 345
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=35.92 E-value=3.2e+02 Score=24.43 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=39.0
Q ss_pred cccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEec
Q psy12587 202 RYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLT 270 (390)
Q Consensus 202 ~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g 270 (390)
-+.-..+++.+++++....++++. ++++++|+. +++++.+.++++. +++.+..
T Consensus 8 amGgD~~p~~vl~aa~~a~~~~~~-----~~~iLvG~~-----------~~I~~~l~~~~~~~~~~~Iv~ 61 (334)
T PRK05331 8 AMGGDFGPEVVVPGALQALKEHPD-----LEIILVGDE-----------EKIKPLLAKKPDLKERIEIVH 61 (334)
T ss_pred cCCCccCHHHHHHHHHHHHhcCCC-----eEEEEEeCH-----------HHHHHHHHhcCCCcCCcEEEe
Confidence 345567899999999988887654 899999975 7788887777642 3455554
No 346
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.64 E-value=3.6e+02 Score=24.89 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=91.6
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCc---cchhhhcCCCCCCCCeEEEEeeccc--ccC
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTP---EPIENVLNPLPGKEDIVFLSINRYE--RKK 207 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~~~g~~~--~~K 207 (390)
+...|.|+-..+...+.+.+.....+++-+.|+..++. +..-..-. ..+++.. +-+++.+....+. ...
T Consensus 61 l~E~d~VfGg~~~L~~~i~~~~~~~~P~~i~v~~tC~~-~~iGdDi~~v~~~~~~~~-----~~~vi~v~t~gf~g~~~~ 134 (410)
T cd01968 61 LSEKDVIFGGEKKLYKAILEIIERYHPKAVFVYSTCVV-ALIGDDIDAVCKTASEKF-----GIPVIPVHSPGFVGNKNL 134 (410)
T ss_pred CCccceeeccHHHHHHHHHHHHHhCCCCEEEEECCCch-hhhccCHHHHHHHHHHhh-----CCCEEEEECCCcccChhH
Confidence 55667888777888887777665554444555555432 22211111 1111111 1233333333332 245
Q ss_pred CHHHHHHHHHHHHhhcccc-cccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcce
Q psy12587 208 NLELAIYSLNSLRSRLSDE-MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHC 286 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~-~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv 286 (390)
|.+..++++-+......+. ...+-.+.|+|...... + ..+++++.++.|+..+..+.+..+-+|+.. +..|.+
T Consensus 135 G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~----d-~~el~~lL~~~Gl~v~~~~~~~~s~eei~~-~~~A~l 208 (410)
T cd01968 135 GNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAG----E-LWGVKPLLEKLGIRVLASITGDSRVDEIRR-AHRAKL 208 (410)
T ss_pred HHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcc----c-HHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-hhhCcE
Confidence 6776766665433211100 00125688888543321 1 278999999999987777888878787544 667776
Q ss_pred EEeCCCCCCCCccHHhhh--hcCCCEEE
Q psy12587 287 IIYTPSNEHFGIVPIEAM--FCKRPVIA 312 (390)
Q Consensus 287 ~v~ps~~e~~~~~~~Ea~--a~G~pvi~ 312 (390)
-+..+.. .+..+.+.| -+|+|.+.
T Consensus 209 niv~~~~--~~~~~a~~L~~~fGip~~~ 234 (410)
T cd01968 209 NVVQCSK--SMIYLARKMEEKYGIPYIE 234 (410)
T ss_pred EEEEchh--HHHHHHHHHHHHhCCCeEe
Confidence 6643321 234456666 47999885
No 347
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=35.43 E-value=1.3e+02 Score=26.69 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=21.3
Q ss_pred HHHHHHHHhcceEEe--CCCCCCCCc---cHHhhhhcCCCEE
Q psy12587 275 AAKISLFKFCHCIIY--TPSNEHFGI---VPIEAMFCKRPVI 311 (390)
Q Consensus 275 ~e~~~~~~~adv~v~--ps~~e~~~~---~~~Ea~a~G~pvi 311 (390)
.++.+++++||++.+ |...|+-++ ..+..|--|.-+|
T Consensus 189 ~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI 230 (324)
T COG0111 189 DSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILI 230 (324)
T ss_pred ccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE
Confidence 346778888887654 455565554 3455554455333
No 348
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=35.33 E-value=1.1e+02 Score=26.08 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=35.5
Q ss_pred CCcEEEecC-CChH---HHHHHHHhcceEEeCC-CCCCCC--ccHHhhhhcCCCEEEecCCC
Q psy12587 263 SDNVLFLTS-PSDA---AKISLFKFCHCIIYTP-SNEHFG--IVPIEAMFCKRPVIAVNSGG 317 (390)
Q Consensus 263 ~~~v~~~g~-~~~~---e~~~~~~~adv~v~ps-~~e~~~--~~~~Ea~a~G~pvi~~~~~~ 317 (390)
.++|.+.|. ++.. ...+.+..||++|+-. .....| .-+-+|...|.|+|.-+...
T Consensus 180 rP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~ 241 (260)
T cd01409 180 KPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGP 241 (260)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCC
Confidence 467888877 5543 3466778899877642 223333 23345778999999987653
No 349
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=35.31 E-value=1.1e+02 Score=25.11 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=35.2
Q ss_pred CCcEEEecC-CChH---HHHHHHHhcceEEeC-CCCCCCCcc--HHhhhhcCCCEEEecCC
Q psy12587 263 SDNVLFLTS-PSDA---AKISLFKFCHCIIYT-PSNEHFGIV--PIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 263 ~~~v~~~g~-~~~~---e~~~~~~~adv~v~p-s~~e~~~~~--~~Ea~a~G~pvi~~~~~ 316 (390)
.++|.+.|. ++.. +..+.+++||++|+- +.....|.. +-+|...|.|+|.-+..
T Consensus 131 rP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 131 KDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred CCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 477888887 5653 456677889987764 222333332 34577889999986654
No 350
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=35.17 E-value=1.7e+02 Score=20.96 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+..+...++++.+ . +-+. .++++ ..|+++..+....-.-.+.+++..|++|++-.
T Consensus 37 ~~~~~~~~~~~~~---~---~~~~---~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 37 ERAEAFAEKYGIP---V---YTDL---EELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp HHHHHHHHHTTSE---E---ESSH---HHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHhccc---c---hhHH---HHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEc
Confidence 5667777787763 2 2223 35666 67877765544333445788999999998855
No 351
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=34.96 E-value=2.4e+02 Score=24.01 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-----CcEEEecCC--------------
Q psy12587 212 AIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-----DNVLFLTSP-------------- 272 (390)
Q Consensus 212 ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-----~~v~~~g~~-------------- 272 (390)
++.|++...+...+ .+++++|.|... ...-+.+...+.+.|++ .++.+...-
T Consensus 12 ll~Al~~~g~~l~d-----~riv~~GAGsAg----~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~ 82 (255)
T PF03949_consen 12 LLNALRVTGKKLSD-----QRIVFFGAGSAG----IGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHK 82 (255)
T ss_dssp HHHHHHHHTS-GGG------EEEEEB-SHHH----HHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHH
T ss_pred HHHHHHHhCCCHHH-----cEEEEeCCChhH----HHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhh
Confidence 45555555555554 888888887532 11113333333333764 556554321
Q ss_pred --------Ch---HHHHHHHHhc--ceEEeCCC-CCCCCccHHhhhh--cCCCEEE
Q psy12587 273 --------SD---AAKISLFKFC--HCIIYTPS-NEHFGIVPIEAMF--CKRPVIA 312 (390)
Q Consensus 273 --------~~---~e~~~~~~~a--dv~v~ps~-~e~~~~~~~Ea~a--~G~pvi~ 312 (390)
+. ..+.+.++.+ |++|-.|. ...|.--++++|+ +..|||-
T Consensus 83 ~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF 138 (255)
T PF03949_consen 83 KPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIF 138 (255)
T ss_dssp HHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEE
T ss_pred hhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEE
Confidence 00 1466788888 89988773 4445556788887 4577776
No 352
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=34.82 E-value=20 Score=33.94 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=16.8
Q ss_pred CcchhhhHhh-HhhhhcCCceeec
Q psy12587 3 GATARLTITA-TAWGATGPRTTAH 25 (390)
Q Consensus 3 GG~~~~~~~l-~~L~~~G~~V~~~ 25 (390)
|..-.....+ ++|+++||+||++
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl 33 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVL 33 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEE
T ss_pred cCHHHHHHHHHHHHHhcCCceEEE
Confidence 3444566778 9999999999998
No 353
>PRK05380 pyrG CTP synthetase; Validated
Probab=34.32 E-value=3.6e+02 Score=25.91 Aligned_cols=87 Identities=15% Similarity=0.056 Sum_probs=48.3
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC--CChHHHHHHHHhcceEEeCCCC-----CCCCccHHh
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS--PSDAAKISLFKFCHCIIYTPSN-----EHFGIVPIE 302 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~--~~~~e~~~~~~~adv~v~ps~~-----e~~~~~~~E 302 (390)
.+++-++|.............+.++......+..-.+.|... ++.....+.+..+|.+++|.-+ ++.-..+-+
T Consensus 288 ~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~ 367 (533)
T PRK05380 288 EVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERGIEGKILAIRY 367 (533)
T ss_pred ceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccccccHHHHHHH
Confidence 499999998765422222333344444444443334445432 2221135789999999988632 111112445
Q ss_pred hhhcCCCEEEecCC
Q psy12587 303 AMFCKRPVIAVNSG 316 (390)
Q Consensus 303 a~a~G~pvi~~~~~ 316 (390)
|...|+|+++.-.|
T Consensus 368 a~e~~iPiLGIClG 381 (533)
T PRK05380 368 ARENNIPFLGICLG 381 (533)
T ss_pred HHHCCCcEEEEchH
Confidence 66789999886543
No 354
>COG1273 Ku-homolog [Replication, recombination, and repair]
Probab=34.29 E-value=73 Score=26.96 Aligned_cols=134 Identities=8% Similarity=0.037 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCc-cHHhhhhcC-CCEEEecCC---CcccceecC
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGI-VPIEAMFCK-RPVIAVNSG---GPKESVVDG 325 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~-~~~Ea~a~G-~pvi~~~~~---~~~e~i~~~ 325 (390)
+++.....+. ...|.+..|++.+++..+|-..-.++.|....+=.. .+-|||+.- +--|+--+- .-.-++...
T Consensus 79 eel~s~~~es--~kti~I~~Fvp~~eId~iyfD~pYYl~Pd~~g~~af~lLReam~~~~~~aIar~vl~~Rer~v~Lrp~ 156 (278)
T COG1273 79 EELESVPLES--TKTIEIEAFVPRDEIDPIYFDKPYYLAPDKVGEKAFALLREAMAETKKVAIARLVLRRRERLVLLRPR 156 (278)
T ss_pred HHHhhccccc--cceEeEEeecCHhhcCceeecCceeecCCCCcchHHHHHHHHHHHcCcchhhhhhhhccceeEEEEec
Confidence 6666665554 367889999999999999999999999884222222 356888743 322221111 111234455
Q ss_pred cceeeecC--------CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 326 RTGFLCES--------NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 326 ~~g~~~~~--------~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
++|+++.. ++++.-..|-..-.+++ .-.+...-...-...|+++.+-+.|.+.+.++++.|
T Consensus 157 ~~glv~~TL~~~dEVRs~d~~f~~i~~~~~d~e--ml~lA~~lI~~~~~~fdp~~y~D~y~~aL~elI~aK 225 (278)
T COG1273 157 GKGLVLTTLRYPDEVRSPDEYFPGIPDIKIDPE--MLELAKQLIDKKTGTFDPDEYEDRYQEALMELIEAK 225 (278)
T ss_pred CCcEEEEEecCchhccChhhhcCCCCcccCCHH--HHHHHHHHHHHhcCCCChHHccCHHHHHHHHHHHHH
Confidence 56666532 22332222222222332 334444444444578999988888888877776543
No 355
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=34.28 E-value=2.2e+02 Score=23.59 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcce
Q psy12587 207 KNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHC 286 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv 286 (390)
++++..++.+.+.. .+ -+.+++=-. ....++-+.+++.|....+.+-+..+-+.+..++...|.
T Consensus 68 ~~p~~~i~~~~~~g---ad----~i~~H~Ea~---------~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~ 131 (220)
T PRK08883 68 KPVDRIIPDFAKAG---AS----MITFHVEAS---------EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDL 131 (220)
T ss_pred CCHHHHHHHHHHhC---CC----EEEEcccCc---------ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCe
Confidence 35777777776642 22 234443211 112677788889998888888888899999999999998
Q ss_pred EEeCCCCCCCCc
Q psy12587 287 IIYTPSNEHFGI 298 (390)
Q Consensus 287 ~v~ps~~e~~~~ 298 (390)
+++-+..-|||.
T Consensus 132 vlvMtV~PGfgG 143 (220)
T PRK08883 132 ILLMSVNPGFGG 143 (220)
T ss_pred EEEEEecCCCCC
Confidence 887776666654
No 356
>KOG2648|consensus
Probab=34.25 E-value=1.8e+02 Score=26.86 Aligned_cols=58 Identities=19% Similarity=0.128 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTP 291 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps 291 (390)
.-=+|+|.-.-. .+.+..+.++++++..|....+..+|.+....+ ..+...|++|.-+
T Consensus 268 ~iGlivGTLG~q--g~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKL-AnF~eIDvfV~ia 325 (453)
T KOG2648|consen 268 TIGLIVGTLGRQ--GNREVLEHLRKLLKAAGKKSYVLALGEINPAKL-ANFPEIDVFVQIA 325 (453)
T ss_pred eEEEEEeccccc--CCHHHHHHHHHHHHHcCCceEEEEecCCCHHHh-cCCccccEEEEEe
Confidence 334566643221 234666889999999998888888999998885 5566799998753
No 357
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=34.14 E-value=2.4e+02 Score=24.08 Aligned_cols=37 Identities=22% Similarity=0.084 Sum_probs=19.7
Q ss_pred HHHHHHH--hcceEEeCCC-CCCCCccHHhhhh--cCCCEEE
Q psy12587 276 AKISLFK--FCHCIIYTPS-NEHFGIVPIEAMF--CKRPVIA 312 (390)
Q Consensus 276 e~~~~~~--~adv~v~ps~-~e~~~~~~~Ea~a--~G~pvi~ 312 (390)
.+.+.++ .+|+++-.|. ...|.--++++|+ +..|+|-
T Consensus 97 ~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 138 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIF 138 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEE
Confidence 3455566 6667666554 2334444566665 3455554
No 358
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=34.04 E-value=25 Score=33.41 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=15.5
Q ss_pred hhHhh-HhhhhcCCceeec
Q psy12587 8 LTITA-TAWGATGPRTTAH 25 (390)
Q Consensus 8 ~~~~l-~~L~~~G~~V~~~ 25 (390)
....+ ++|+++||+||++
T Consensus 37 ~~~~l~~~La~rGH~VTvi 55 (507)
T PHA03392 37 VFKVYVEALAERGHNVTVI 55 (507)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 45566 9999999999999
No 359
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=33.68 E-value=2.2e+02 Score=25.46 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=50.8
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEE
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVI 311 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi 311 (390)
-=+++|.-... ......+.+++++++.|....+...|.++.+.+.. +...|++|..+-. -+++.+.-.+-+|||
T Consensus 235 vGIlvgTl~~q--~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~n-f~eiD~fV~~aCP---r~sidd~~~f~kPvl 308 (332)
T TIGR00322 235 FGVVLSSKGGQ--GRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKLLM-FDQIDVFVQVACP---RIAIDDGYLFNKPLL 308 (332)
T ss_pred EEEEEecCccC--CCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhC-CCCcCEEEEecCC---CceecchhhcCCccc
Confidence 33555644332 22345577888889999877788899999987644 4578988876532 245556666677777
Q ss_pred Eec
Q psy12587 312 AVN 314 (390)
Q Consensus 312 ~~~ 314 (390)
++-
T Consensus 309 TP~ 311 (332)
T TIGR00322 309 TPY 311 (332)
T ss_pred cHH
Confidence 643
No 360
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=33.62 E-value=2.3e+02 Score=22.11 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC-hHHHHHHHHhcc
Q psy12587 207 KNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS-DAAKISLFKFCH 285 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~-~~e~~~~~~~ad 285 (390)
=.+...++++..+.....+ .-+++.|+++- ..+-..+++.|. .|...|.-+ -. ..+.+.||
T Consensus 89 ~Dv~laIDame~~~~~~iD-----~~vLvSgD~DF---------~~Lv~~lre~G~--~V~v~g~~~~ts--~~L~~acd 150 (160)
T TIGR00288 89 VDVRMAVEAMELIYNPNID-----AVALVTRDADF---------LPVINKAKENGK--ETIVIGAEPGFS--TALQNSAD 150 (160)
T ss_pred ccHHHHHHHHHHhccCCCC-----EEEEEeccHhH---------HHHHHHHHHCCC--EEEEEeCCCCCh--HHHHHhcC
Confidence 3678899999988555443 56666666543 566666677764 677777321 22 36888999
Q ss_pred eEEeC
Q psy12587 286 CIIYT 290 (390)
Q Consensus 286 v~v~p 290 (390)
-|+.-
T Consensus 151 ~FI~L 155 (160)
T TIGR00288 151 IAIIL 155 (160)
T ss_pred eEEeC
Confidence 88753
No 361
>PRK06487 glycerate dehydrogenase; Provisional
Probab=33.60 E-value=1.2e+02 Score=26.84 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=26.2
Q ss_pred HHHHHHHhcceEEe--CCCCCC---CCccHHhhhhcCCCEEEecCCCc
Q psy12587 276 AKISLFKFCHCIIY--TPSNEH---FGIVPIEAMFCKRPVIAVNSGGP 318 (390)
Q Consensus 276 e~~~~~~~adv~v~--ps~~e~---~~~~~~Ea~a~G~pvi~~~~~~~ 318 (390)
++.++++.||++++ |...++ ++-..+..|--|.-+|-+..|+.
T Consensus 190 ~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~v 237 (317)
T PRK06487 190 PLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL 237 (317)
T ss_pred CHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccc
Confidence 45678889997665 333333 33456777766666666555443
No 362
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.41 E-value=1.3e+02 Score=25.38 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCcc
Q psy12587 250 YKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIV 299 (390)
Q Consensus 250 ~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~ 299 (390)
..++.+.++++|+...+.+....+.+++..+.+.+|-+++-|...++|..
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~ 167 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVP 167 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCC
Confidence 36788899999997666666667778888899999976654554444443
No 363
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=33.34 E-value=3.9e+02 Score=24.69 Aligned_cols=191 Identities=9% Similarity=0.082 Sum_probs=97.6
Q ss_pred HhcCcceEEEccHhHHHHHHHHhccCCCCc-eeecCCCCCCCCCCCCCc---cchhhhcCCCCCCCCeEEEEeeccc---
Q psy12587 132 TTCKADKIVVNSEFTKSVVQATFRSLDHKC-LDILYPSVYTEGLEKTTP---EPIENVLNPLPGKEDIVFLSINRYE--- 204 (390)
Q Consensus 132 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~~~g~~~--- 204 (390)
.+...|.|+--.+...+.+.+.....+..+ +.|+...+ ....-..-. ..++.+. +. -+++.+....+.
T Consensus 61 ~l~E~d~VfGg~~~L~~aI~~~~~~~p~p~~i~V~~tc~-~~liGdDi~~v~~~~~~~~---~~-~~vi~v~tpgf~g~~ 135 (415)
T cd01977 61 DMKESHVVFGGEKKLKKNIIEAFKEFPDIKRMTVYTTCT-TALIGDDIKAVAKEVMEEL---PD-VDIFVCNAPGFAGPS 135 (415)
T ss_pred cCCccceeeccHHHHHHHHHHHHHhCCCCcEEEEECCCc-hhhhcCCHHHHHHHHHHhc---CC-CeEEEEeCCCcCCcc
Confidence 355667888877888887777655442223 44444432 222221111 1111111 11 223333222221
Q ss_pred ccCCHHHHHHHHH-HHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh
Q psy12587 205 RKKNLELAIYSLN-SLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF 283 (390)
Q Consensus 205 ~~K~~~~ll~a~~-~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ 283 (390)
...|.+...+++- .+....+.....+-.+.|+|..... . + ..+++++.+++|+..+..+.|..+-+|+. -+..
T Consensus 136 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~~--~--d-~~ei~~lL~~~Gl~v~~~~~~~~t~~ei~-~~~~ 209 (415)
T cd01977 136 QSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNIQ--G--D-TEVLQKYFERMGIQVLSTFTGNGTYDDLR-WMHR 209 (415)
T ss_pred hhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCCc--c--c-HHHHHHHHHHcCCeEEEEECCCCCHHHHH-hccc
Confidence 2345655554433 2322111000012457777854321 1 1 26799999999997766788878878754 4677
Q ss_pred cceEEeCCCCCCCCccHHhhhh--cCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCC
Q psy12587 284 CHCIIYTPSNEHFGIVPIEAMF--CKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDND 349 (390)
Q Consensus 284 adv~v~ps~~e~~~~~~~Ea~a--~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~ 349 (390)
|.+-+..... .+..+.+.|. +|+|.+..+. + | +. +.+++.+.|.+++.-+
T Consensus 210 A~lnlv~~~~--~~~~~A~~L~er~GiP~~~~~~------~--G-----~~-~t~~~l~~la~~~g~~ 261 (415)
T cd01977 210 AKLNVVNCAR--SAGYIANELKKRYGIPRLDVDG------F--G-----FE-YCAESLRKIGAFFGIE 261 (415)
T ss_pred CCEEEEEchh--HHHHHHHHHHHHhCCCeEEecc------C--C-----HH-HHHHHHHHHHHHhCcc
Confidence 7765543322 2345666665 7999887531 1 1 12 4556666666665433
No 364
>PRK10116 universal stress protein UspC; Provisional
Probab=33.30 E-value=2e+02 Score=21.30 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=22.7
Q ss_pred ChHHHHHHHH--hcceEEeCCCCC-CCCc--cHHhhh--hcCCCEEEecC
Q psy12587 273 SDAAKISLFK--FCHCIIYTPSNE-HFGI--VPIEAM--FCKRPVIAVNS 315 (390)
Q Consensus 273 ~~~e~~~~~~--~adv~v~ps~~e-~~~~--~~~Ea~--a~G~pvi~~~~ 315 (390)
+.+++.++.. .+|++++.+... ++.. +..|.+ .+++||+.-+.
T Consensus 90 ~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 90 LSEHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3455556555 677777765521 1111 223433 36788887654
No 365
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.20 E-value=2.7e+02 Score=22.80 Aligned_cols=93 Identities=9% Similarity=0.108 Sum_probs=49.9
Q ss_pred HHhcceEEeCCCCCCCCccHHhhhh-cCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHH
Q psy12587 281 FKFCHCIIYTPSNEHFGIVPIEAMF-CKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQF 359 (390)
Q Consensus 281 ~~~adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 359 (390)
+-.||++++|-.. | -=.||+. +|+-||+-|...++..-+.. +--+ .+.+..++-++..--. +.+..+..
T Consensus 151 Iy~ADVVLvpLED-G---DRteaLv~mGK~ViaIDLNPLSRTar~A-sItI----VDnivRA~p~li~~~~-em~~~~re 220 (256)
T COG1701 151 IYSADVVLVPLED-G---DRTEALVRMGKTVIAIDLNPLSRTARKA-SITI----VDNIVRAVPNLIEFVK-EMKNASRE 220 (256)
T ss_pred ceeccEEEEecCC-C---cHHHHHHHhCCeEEEEeCCccccccccC-ceee----eHHHHHHHHHHHHHHH-HHhccCHH
Confidence 4468999988542 1 1245554 89999999988777654332 1122 2445555555554322 22222222
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 360 GFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
-.+.+.++|+-..+..+.++.+.+
T Consensus 221 el~~iv~~ydN~~~l~eal~~I~~ 244 (256)
T COG1701 221 ELEEIVENYDNKEVLAEALKHIAE 244 (256)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Confidence 223334677766655555555543
No 366
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.93 E-value=1.1e+02 Score=28.16 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=44.8
Q ss_pred HHhcceEEeCCCCCC------CCccHHhhhhcCCCEEEecCCCccc------ceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 281 FKFCHCIIYTPSNEH------FGIVPIEAMFCKRPVIAVNSGGPKE------SVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 281 ~~~adv~v~ps~~e~------~~~~~~Ea~a~G~pvi~~~~~~~~e------~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
|.--|++++|...+- ....+.+.+.+..|+|.++..+..+ +-+.|.-|++-.. +++++.+.|.++-.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l~~eI~~vk~ 89 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVKT 89 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHHHHh
Confidence 444567888866432 3345678999999999977644322 2244666766555 89999888877654
No 367
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=32.80 E-value=2e+02 Score=26.24 Aligned_cols=39 Identities=8% Similarity=0.069 Sum_probs=23.1
Q ss_pred HHHHHHHH--hcceEEeCCCCCCCCc-cHHhhhhcCCCEEEec
Q psy12587 275 AAKISLFK--FCHCIIYTPSNEHFGI-VPIEAMFCKRPVIAVN 314 (390)
Q Consensus 275 ~e~~~~~~--~adv~v~ps~~e~~~~-~~~Ea~a~G~pvi~~~ 314 (390)
+.+.++.. .+|+++.... ..-|+ ..++|+..|+.+...+
T Consensus 83 ~~l~~l~~~~~~D~vv~Aiv-G~aGL~pt~~Ai~~gk~iaLAN 124 (389)
T TIGR00243 83 EGICEMAALEDVDQVMNAIV-GAAGLLPTLAAIRAGKTIALAN 124 (389)
T ss_pred HHHHHHHcCCCCCEEEEhhh-cHhhHHHHHHHHHCCCcEEEec
Confidence 34445554 3577776432 22233 4688999998876655
No 368
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=32.50 E-value=1e+02 Score=25.00 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEE
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVI 311 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi 311 (390)
..++..++. .|.|-|.-=..-+..+|.+..+.+.|.+ |++++|+|+...--+
T Consensus 112 ~~Ie~~ir~-----YVaFSG~NFPhilvPLMe~~~vMiNp~R----PLViYESMs~~l~~L 163 (218)
T PF12119_consen 112 ALIESFIRS-----YVAFSGQNFPHILVPLMEEHQVMINPAR----PLVIYESMSFELDRL 163 (218)
T ss_pred HHHHHHHHH-----HhcccCCCCcHHhhhhHhhcCeeecCCC----ceEEeEeeEEEeccc
Confidence 445566654 4888887444456789999999999986 899999998765443
No 369
>TIGR03586 PseI pseudaminic acid synthase.
Probab=32.48 E-value=2.4e+02 Score=25.08 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhh-cCCCEEEecC
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMF-CKRPVIAVNS 315 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~ 315 (390)
.++.+.++++|++ .+.-..+... .+++.. .+++=.+| .+-....++|+++ .|+|||.|..
T Consensus 80 ~~L~~~~~~~Gi~---~~stpfd~~s-vd~l~~~~v~~~KI~S-~~~~n~~LL~~va~~gkPvilstG 142 (327)
T TIGR03586 80 KELFERAKELGLT---IFSSPFDETA-VDFLESLDVPAYKIAS-FEITDLPLIRYVAKTGKPIIMSTG 142 (327)
T ss_pred HHHHHHHHHhCCc---EEEccCCHHH-HHHHHHcCCCEEEECC-ccccCHHHHHHHHhcCCcEEEECC
Confidence 6677777777753 1222233333 344544 44444444 3334455676665 6888887653
No 370
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=32.40 E-value=2.6e+02 Score=23.29 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCc
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGI 298 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~ 298 (390)
.+..+.++++|....+-+-+..+-+.+..++...|.+++-+..-||+.
T Consensus 100 ~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~G 147 (223)
T PRK08745 100 HRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGG 147 (223)
T ss_pred HHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCC
Confidence 677788899998888888888888999999999998877666555543
No 371
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.33 E-value=3.2e+02 Score=23.74 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=43.4
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhcCCCEEEecCCCcccc-e----e--cCcceeeecC-CHHHHHHHHHHHhc-
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKES-V----V--DGRTGFLCES-NEEAFAKAMKKIVD- 347 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~-i----~--~~~~g~~~~~-~~~~l~~~i~~l~~- 347 (390)
..-+++||+++.-.. .|+|=-.++....-+.++|.... +...+ + . ..+.-++.++ +...+++.|.+.+.
T Consensus 61 ~~~l~~Adlvv~~G~~~E~wl~~~~~~~~~~~~~v~~~~-~i~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~Ia~~L~~ 139 (287)
T cd01137 61 IKKLSKADLILYNGLNLEPWLERLVKNAGKDVPVVAVSE-GIDPIPLEEGHYKGKPDPHAWMSPKNAIIYVKNIAKALSE 139 (287)
T ss_pred HHHHHhCCEEEEcCCCcHHHHHHHHHhcCCCCcEEEecC-CccccccCccccCCCCCCCcCcCHHHHHHHHHHHHHHHHH
Confidence 467788888776432 44443334443322334443221 11100 0 0 1133455666 77888888877664
Q ss_pred -CChhHHHHHHHHHHHHH
Q psy12587 348 -NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 348 -~~~~~~~~~~~~~~~~~ 364 (390)
+|+ ......+|+..+.
T Consensus 140 ~dP~-~~~~y~~N~~~~~ 156 (287)
T cd01137 140 ADPA-NAETYQKNAAAYK 156 (287)
T ss_pred HCcc-cHHHHHHHHHHHH
Confidence 565 5555555555554
No 372
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=32.30 E-value=47 Score=23.53 Aligned_cols=12 Identities=33% Similarity=0.204 Sum_probs=4.8
Q ss_pred hhhcCCCEEEec
Q psy12587 303 AMFCKRPVIAVN 314 (390)
Q Consensus 303 a~a~G~pvi~~~ 314 (390)
|-..|+||+.++
T Consensus 81 a~~~~i~vi~t~ 92 (105)
T PF07085_consen 81 AKELGIPVISTP 92 (105)
T ss_dssp HHHHT-EEEE-S
T ss_pred HHHCCCEEEEEC
Confidence 344445555544
No 373
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=32.25 E-value=1.4e+02 Score=29.63 Aligned_cols=78 Identities=9% Similarity=-0.051 Sum_probs=47.5
Q ss_pred EecCCChHHHHHHHHhcceEEeCCC--CCCCCccHHhhhhcC------CCEEEecCCCcccceecCcceeeecC---CHH
Q psy12587 268 FLTSPSDAAKISLFKFCHCIIYTPS--NEHFGIVPIEAMFCK------RPVIAVNSGGPKESVVDGRTGFLCES---NEE 336 (390)
Q Consensus 268 ~~g~~~~~e~~~~~~~adv~v~ps~--~e~~~~~~~Ea~a~G------~pvi~~~~~~~~e~i~~~~~g~~~~~---~~~ 336 (390)
++-+++.+-+.+..+..+.+|.--. .-|+|-.+.|.++-. +|+. ..|-..+++.++....+... |++
T Consensus 603 ~ikPLD~e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~--~iGipd~F~~~G~~~~ll~~~GLdae 680 (701)
T PLN02225 603 FCKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWR--PIVLPDGYIEEASPREQLALAGLTGH 680 (701)
T ss_pred CCCCCCHHHHHHHHhhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEE--EEecCCcCcCCCCHHHHHHHhCcCHH
Confidence 3445666667777878877665311 367788888888644 3442 22333445555544444332 888
Q ss_pred HHHHHHHHHhc
Q psy12587 337 AFAKAMKKIVD 347 (390)
Q Consensus 337 ~l~~~i~~l~~ 347 (390)
.+++.+.+++.
T Consensus 681 ~I~~~i~~~l~ 691 (701)
T PLN02225 681 HIAATALSLLG 691 (701)
T ss_pred HHHHHHHHHHh
Confidence 88888887764
No 374
>PHA00451 protein kinase
Probab=32.16 E-value=1.4e+02 Score=25.49 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=28.6
Q ss_pred CCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhc
Q psy12587 295 HFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD 347 (390)
Q Consensus 295 ~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~ 347 (390)
..|+.++. -.|+|+|+-++.-..+ .+.+.| ++-||++|...++.+..
T Consensus 196 HSGNiMf~--~~g~p~ITDPVSFS~d--r~re~G--F~ldPd~LiaEvEaia~ 242 (362)
T PHA00451 196 HSGNIMFD--QDGVPYITDPVSFSHD--REREPG--FPLDPDELIAEVEAIAN 242 (362)
T ss_pred cCCceeeC--CCCCeEecCCccccCc--cccCCC--CCCCHHHHHHHHHHHHH
Confidence 34444432 3589999988765544 223456 33378888887776643
No 375
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=32.06 E-value=3e+02 Score=22.86 Aligned_cols=139 Identities=11% Similarity=0.059 Sum_probs=77.2
Q ss_pred CCeEEEEeeccc--ccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 193 EDIVFLSINRYE--RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 193 ~~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
.+-.++.+|... ...|...+...+-++.+.... +..+.+-|-+... +.+....+|
T Consensus 83 ~~Dliil~Gd~Q~~~~~gqyel~~~~Ld~a~e~g~----~~IyTLGGy~vGk-------------------l~eep~VlG 139 (258)
T COG2047 83 ERDLIILVGDTQATSSEGQYELTGKILDIAKEFGA----RMIYTLGGYGVGK-------------------LVEEPRVLG 139 (258)
T ss_pred CCcEEEEeccccccCcchhHHHHHHHHHHHHHcCC----cEEEEecCcccCc-------------------ccCCceeEE
Confidence 344556667653 455777776666666665542 2334443322221 124456789
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecC-cceeeecC-CHHHHHHHHHHHhcC
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDG-RTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~-~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
.+++.++.+.++...+.+- +---|-|++= |+|+-+=.+...|+.-..--| -.|+++++ .+.++.+.+.+++.-
T Consensus 140 A~ts~eLi~~lke~gV~fr-~~epgGgIVG----asGLllg~g~l~gm~gaCLMGeT~GY~vDpkaAkaVL~vl~k~lgi 214 (258)
T COG2047 140 AVTSKELIEELKEHGVEFR-SGEPGGGIVG----ASGLLLGFGELRGMDGACLMGETPGYLVDPKAAKAVLEVLCKMLGI 214 (258)
T ss_pred ecCCHHHHHHHHHcCeEec-cCCCCCceec----hhhhhhhhhhhcCCCceeeccCCCccccChHHHHHHHHHHHHHhCc
Confidence 9999999999999987763 3222223321 122222222222332222222 25889998 888999988888765
Q ss_pred ChhHHHHHHHHH
Q psy12587 349 DGNIIQQFSQFG 360 (390)
Q Consensus 349 ~~~~~~~~~~~~ 360 (390)
.- ....+-++|
T Consensus 215 Ei-d~~~Le~RA 225 (258)
T COG2047 215 EI-DMEALEERA 225 (258)
T ss_pred ee-cHHHHHHHH
Confidence 44 344444444
No 376
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=31.91 E-value=4.2e+02 Score=25.60 Aligned_cols=102 Identities=12% Similarity=0.002 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEe
Q psy12587 210 ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIY 289 (390)
Q Consensus 210 ~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ 289 (390)
..+++++...++.. -++-++|..... ..++.+..-+++ .+...-+.+.+|....+
T Consensus 94 ~Dil~al~~a~~~~-------~~iavv~~~~~~--------~~~~~~~~~l~~--~i~~~~~~~~~e~~~~v-------- 148 (538)
T PRK15424 94 FDVMQALARARKLT-------SSIGVVTYQETI--------PALVAFQKTFNL--RIEQRSYVTEEDARGQI-------- 148 (538)
T ss_pred hHHHHHHHHHHhcC-------CcEEEEecCccc--------HHHHHHHHHhCC--ceEEEEecCHHHHHHHH--------
Confidence 34677777765542 356777765543 666666666665 35555566666654433
Q ss_pred CCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcC
Q psy12587 290 TPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDN 348 (390)
Q Consensus 290 ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~ 348 (390)
.++-+.|+-+|..+.-....-.+.+.+|.+.. +.+++..++.++++.
T Consensus 149 -----------~~lk~~G~~~vvG~~~~~~~A~~~g~~g~~~~-s~e~i~~a~~~A~~~ 195 (538)
T PRK15424 149 -----------NELKANGIEAVVGAGLITDLAEEAGMTGIFIY-SAATVRQAFEDALDM 195 (538)
T ss_pred -----------HHHHHCCCCEEEcCchHHHHHHHhCCceEEec-CHHHHHHHHHHHHHH
Confidence 45556677777766444433344566777666 668888888887653
No 377
>KOG2884|consensus
Probab=31.88 E-value=2.9e+02 Score=22.76 Aligned_cols=118 Identities=11% Similarity=0.134 Sum_probs=54.8
Q ss_pred CeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC
Q psy12587 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS 273 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~ 273 (390)
..+++|+|+-..+-. ..+++.++++++..-. +.++.+|..... .+.+...+..++-+
T Consensus 108 ~riVvFvGSpi~e~e-keLv~~akrlkk~~Va-----idii~FGE~~~~-------~e~l~~fida~N~~---------- 164 (259)
T KOG2884|consen 108 QRIVVFVGSPIEESE-KELVKLAKRLKKNKVA-----IDIINFGEAENN-------TEKLFEFIDALNGK---------- 164 (259)
T ss_pred eEEEEEecCcchhhH-HHHHHHHHHHHhcCee-----EEEEEecccccc-------HHHHHHHHHHhcCC----------
Confidence 456677776432211 2666777777665442 555555544321 02333333322110
Q ss_pred hHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcc-cceec-CcceeeecC-CHHHHHHHHHHHhc
Q psy12587 274 DAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPK-ESVVD-GRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 274 ~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~-e~i~~-~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
=..|+++.+|+ ..+++-...-.|++..+.|+.. ....+ ...-+-+++ +--+||-+++=-++
T Consensus 165 -------~~gshlv~Vpp------g~~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSME 228 (259)
T KOG2884|consen 165 -------GDGSHLVSVPP------GPLLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSME 228 (259)
T ss_pred -------CCCceEEEeCC------CccHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhHH
Confidence 01234455444 1244445556788887643322 21111 112223445 55678888765444
No 378
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=31.76 E-value=77 Score=24.41 Aligned_cols=103 Identities=15% Similarity=0.217 Sum_probs=60.0
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh---cceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF---CHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~---adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
.+.++-+.. .|...+....+..|.. |.... +-+|.....+. +.+++-.-..+|.|+.++|++..-.
T Consensus 11 ~lllvdDD~-------~f~~~LaRa~e~RGf~--v~~a~--~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~ 79 (182)
T COG4567 11 SLLLVDDDT-------PFLRTLARAMERRGFA--VVTAE--SVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERR 79 (182)
T ss_pred eeEEecCCh-------HHHHHHHHHHhccCce--eEeec--cHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcC
Confidence 566665443 3445555555555542 22222 22332333332 1233333335689999999988765
Q ss_pred C----EEEecCCCc---ccceecCcceeeecC-CHHHHHHHHHHH
Q psy12587 309 P----VIAVNSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKI 345 (390)
Q Consensus 309 p----vi~~~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l 345 (390)
+ ||.|..+.+ -+-++-|.+-++..| |.+++..++.+-
T Consensus 80 ~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 80 ADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 4 555665544 344556777888999 999999988765
No 379
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=31.74 E-value=2.6e+02 Score=22.04 Aligned_cols=87 Identities=8% Similarity=0.112 Sum_probs=46.6
Q ss_pred HHhcceEEeCCCCCCCCccHHhhhh-cCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHH
Q psy12587 281 FKFCHCIIYTPSNEHFGIVPIEAMF-CKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQF 359 (390)
Q Consensus 281 ~~~adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 359 (390)
+-.||+++.|-.. | ==.||+. +|+-||+-|..+++..-+.. +--++ +.+..++-.+.+.-. ..+.+.+.
T Consensus 87 Iy~ADVVLVPLED-G---DR~EAL~~mGK~VIaIDLNPLSRTar~A-titIV----Dni~RA~p~~~~~~~-~lk~~~~~ 156 (178)
T PF02006_consen 87 IYSADVVLVPLED-G---DRTEALVKMGKTVIAIDLNPLSRTARTA-TITIV----DNITRAIPNMIEFAR-ELKKKDRE 156 (178)
T ss_pred ceeccEEEeccCC-C---cHHHHHHHcCCeEEEEeCCCcccccccC-ceeee----hhHHHHHHHHHHHHH-HHhcCCHH
Confidence 4458888887542 1 1245654 89999999988776644322 22223 344555444443222 22222333
Q ss_pred HHHHHhhhcCHHHHHHHH
Q psy12587 360 GFNRFNEKFSFQAFSIQL 377 (390)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~ 377 (390)
..+.+.+.|+-+.....-
T Consensus 157 el~~iv~~~dN~~~L~~a 174 (178)
T PF02006_consen 157 ELEEIVKNYDNKKNLSEA 174 (178)
T ss_pred HHHHHHHhcCcHHHHHHH
Confidence 334444777766655443
No 380
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=31.60 E-value=3.3e+02 Score=23.30 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc-
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC- 284 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a- 284 (390)
++.+.++++..++.+-. +.+.+...... +.++..++-+.+.+.|. +.+.+ .|...+.++.++++..
T Consensus 111 ~~~~~~~i~~a~~~G~~-----v~~~~eda~r~----~~~~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~v~~~~~~~~ 180 (262)
T cd07948 111 IESAVEVIEFVKSKGIE-----VRFSSEDSFRS----DLVDLLRVYRAVDKLGV-NRVGIADTVGIATPRQVYELVRTLR 180 (262)
T ss_pred HHHHHHHHHHHHHCCCe-----EEEEEEeeCCC----CHHHHHHHHHHHHHcCC-CEEEECCcCCCCCHHHHHHHHHHHH
Confidence 44455555666655432 45544322111 12334555556666664 56655 4667777776665542
Q ss_pred -----ceEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHH
Q psy12587 285 -----HCIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKK 344 (390)
Q Consensus 285 -----dv~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~ 344 (390)
.+.++. ...+|+. .++|+.+|.-.|-+..+|+.|-- |-. ..++++..+..
T Consensus 181 ~~~~~~i~~H~--Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGera-----Gn~---~~e~~~~~l~~ 238 (262)
T cd07948 181 GVVSCDIEFHG--HNDTGCAIANAYAALEAGATHIDTTVLGIGERN-----GIT---PLGGLIARMYT 238 (262)
T ss_pred HhcCCeEEEEE--CCCCChHHHHHHHHHHhCCCEEEEecccccccc-----CCc---cHHHHHHHHHh
Confidence 233332 3445553 58899999999999999988742 211 56777776643
No 381
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=31.54 E-value=2.4e+02 Score=26.51 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=31.1
Q ss_pred CCCcEEEecCCChHHHHHHHHhcce-EEeCCCCCCCCccHHhhhhcCCCEEEecCC
Q psy12587 262 LSDNVLFLTSPSDAAKISLFKFCHC-IIYTPSNEHFGIVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 262 l~~~v~~~g~~~~~e~~~~~~~adv-~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~ 316 (390)
.+.+|+.+..--+. .++++..|= +..+|. .-+||+.||+|+++...+
T Consensus 206 ~~~r~~ll~edfnp--isll~~~dkvy~~ts~------mgfeall~~~~~~~fg~p 253 (671)
T COG3563 206 QQHRVHLLAEDFNP--ISLLQNVDKVYCVTSQ------MGFEALLCGKPLTTFGLP 253 (671)
T ss_pred cCceEEEecccCCh--HHHHHhcceeEEeecc------ccHHHHhcCCceeeecch
Confidence 35677776542223 478888884 444442 238999999999998643
No 382
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=31.42 E-value=75 Score=24.74 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=27.4
Q ss_pred HHHHHhcceEEeCCCCCCCCc--cHHhhhhcCCCEEEecCCC
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGI--VPIEAMFCKRPVIAVNSGG 317 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~--~~~Ea~a~G~pvi~~~~~~ 317 (390)
.-+...||++|... .++|. -+.||+..++||+.-+..+
T Consensus 86 ~~m~~~sda~Ivlp--GG~GTL~E~~~a~~~~kpv~~l~~~g 125 (159)
T TIGR00725 86 FILVRSADVVVSVG--GGYGTAIEILGAYALGGPVVVLRGTG 125 (159)
T ss_pred HHHHHHCCEEEEcC--CchhHHHHHHHHHHcCCCEEEEECCC
Confidence 56777899877643 25554 4789999999998866543
No 383
>PRK00124 hypothetical protein; Validated
Probab=31.35 E-value=30 Score=26.57 Aligned_cols=125 Identities=10% Similarity=0.177 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCc---
Q psy12587 250 YKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGR--- 326 (390)
Q Consensus 250 ~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~--- 326 (390)
.+++.+.+++++++ +.+.-.+++.--...-......+.++-.+.--..++|...-|=-||+.|.+=....+..|.
T Consensus 13 k~~i~r~a~r~~i~--v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~gDiVIT~Di~LAa~~l~Kga~vl 90 (151)
T PRK00124 13 KDIIIRVAERHGIP--VTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKGDIVITQDYGLAALALEKGAIVL 90 (151)
T ss_pred HHHHHHHHHHHCCe--EEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCCCEEEeCCHHHHHHHHHCCCEEE
Confidence 47888888888774 4443322222000000112335555555555567889999998888888776555554432
Q ss_pred --ceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHH-HhhhcCHH---HHHHHHHHHHHh
Q psy12587 327 --TGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNR-FNEKFSFQ---AFSIQLNTIVNN 383 (390)
Q Consensus 327 --~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~ 383 (390)
.|..++ .+. |..+|.... ..+++++.+... --..|+.+ .+.+.+..++.+
T Consensus 91 ~prG~~yt--~~n----I~~~L~~R~-~~~~lR~~G~~t~Gp~~~~~~Dr~~F~~~L~~~l~~ 146 (151)
T PRK00124 91 NPRGYIYT--NDN----IDQLLAMRD-LMATLRRSGIRTGGPKPFTQEDRSRFEAELDKLIRR 146 (151)
T ss_pred CCCCcCCC--HHH----HHHHHHHHH-HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 233333 333 445555555 555665544321 12345544 344555554444
No 384
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=31.28 E-value=4e+02 Score=24.14 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc-
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC- 284 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a- 284 (390)
++.+.++++..++.+. .+.+ + .....+.+.+|..++-+.+.+.|. +.|.+ .|...+.++.++++..
T Consensus 112 l~~~~~~i~~ak~~g~-------~v~~-~-~ed~~r~~~~~l~~~~~~~~~~Ga-~~i~l~DT~G~~~P~~v~~lv~~l~ 181 (365)
T TIGR02660 112 LERLARLVSFARDRGL-------FVSV-G-GEDASRADPDFLVELAEVAAEAGA-DRFRFADTVGILDPFSTYELVRALR 181 (365)
T ss_pred HHHHHHHHHHHHhCCC-------EEEE-e-ecCCCCCCHHHHHHHHHHHHHcCc-CEEEEcccCCCCCHHHHHHHHHHHH
Confidence 4444566666665533 2222 2 223344556777777777888885 56666 4666777666555442
Q ss_pred ---c--eEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCcccc
Q psy12587 285 ---H--CIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKES 321 (390)
Q Consensus 285 ---d--v~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e~ 321 (390)
+ +-++. ...+|+. .++|+.+|.-.|-+...|+.|-
T Consensus 182 ~~~~v~l~~H~--HNd~GlA~ANalaA~~aGa~~vd~tl~GiGer 224 (365)
T TIGR02660 182 QAVDLPLEMHA--HNDLGMATANTLAAVRAGATHVNTTVNGLGER 224 (365)
T ss_pred HhcCCeEEEEe--cCCCChHHHHHHHHHHhCCCEEEEEeeccccc
Confidence 3 23332 3445553 5889999999999888888763
No 385
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=31.21 E-value=3.4e+02 Score=23.30 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=43.9
Q ss_pred CCeEEEEeecccccCC-HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec-
Q psy12587 193 EDIVFLSINRYERKKN-LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT- 270 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~-~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g- 270 (390)
+.++|-+-|+.-.... .+.+++.+..++..+-. . +++-|++ +++.++.+++++++.. ..|
T Consensus 3 k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~-----~-VvVHGgg-----------p~I~~~l~~~gie~~f-~~gl 64 (265)
T COG0548 3 KTIVIKLGGSAMEDENLLEAFASDIALLKSVGIR-----P-VVVHGGG-----------PQIDEMLAKLGIEPEF-VKGL 64 (265)
T ss_pred ceEEEEECceeecCchHHHHHHHHHHHHHHCCCc-----E-EEEeCCc-----------hHHHHHHHHcCCCCee-eCCE
Confidence 3455566666655544 78888888888777542 2 5566666 7888899999985432 223
Q ss_pred CCChHHHHHH
Q psy12587 271 SPSDAAKISL 280 (390)
Q Consensus 271 ~~~~~e~~~~ 280 (390)
++++.+..++
T Consensus 65 RvTd~~tlev 74 (265)
T COG0548 65 RVTDAETLEV 74 (265)
T ss_pred EcCCHHHHHH
Confidence 3555544333
No 386
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=31.01 E-value=2.9e+02 Score=22.45 Aligned_cols=122 Identities=12% Similarity=0.016 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCC-cEEEe-cCCChHHHHHHHHhc
Q psy12587 207 KNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSD-NVLFL-TSPSDAAKISLFKFC 284 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~-~v~~~-g~~~~~e~~~~~~~a 284 (390)
|-...+..|+.-+..-.+ -.+.++|..+. ....+++.++..|-.- +-.|+ |.+++... .-+..-
T Consensus 44 kT~~~L~~A~~~i~~i~~------~~ILfVgtk~~-------~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~-~~~~~P 109 (196)
T TIGR01012 44 KTDERLRVAAKFLVRIEP------EDILVVSARIY-------GQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ-KAFREP 109 (196)
T ss_pred HHHHHHHHHHHHHHHhhC------CeEEEEecCHH-------HHHHHHHHHHHhCCceECCeeCCCCCCCccc-cccCCC
Confidence 444555555554444333 46888887643 2245666666665311 11344 44555432 234556
Q ss_pred ceEEeCCCCCCCCccHHhhhhcCCCEEE-ecCCCcccceecCcceeeecC--CHHHHHHHHHHHhcC
Q psy12587 285 HCIIYTPSNEHFGIVPIEAMFCKRPVIA-VNSGGPKESVVDGRTGFLCES--NEEAFAKAMKKIVDN 348 (390)
Q Consensus 285 dv~v~ps~~e~~~~~~~Ea~a~G~pvi~-~~~~~~~e~i~~~~~g~~~~~--~~~~l~~~i~~l~~~ 348 (390)
|++++... ..-..++-||...|.|+|+ .|....++.+ -+.++. |.-.-...+..++.+
T Consensus 110 dlliv~dp-~~~~~Av~EA~~l~IP~Iai~DTn~dp~~v-----dypIP~Ndds~~Si~li~~lla~ 170 (196)
T TIGR01012 110 EVVVVTDP-RADHQALKEASEVGIPIVALCDTDNPLRYV-----DLVIPTNNKGRHSLALIYWLLAR 170 (196)
T ss_pred CEEEEECC-ccccHHHHHHHHcCCCEEEEeeCCCCCccC-----CEEECCCCchHHHHHHHHHHHHH
Confidence 66655322 2234679999999999999 4544445544 133433 444445555555443
No 387
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=30.97 E-value=3.2e+02 Score=23.17 Aligned_cols=100 Identities=18% Similarity=0.101 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHhh-cccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcE--EEe-cCCChHHHHHHHH
Q psy12587 207 KNLELAIYSLNSLRSR-LSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNV--LFL-TSPSDAAKISLFK 282 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~-~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v--~~~-g~~~~~e~~~~~~ 282 (390)
|-...+..|++-+..- .+ -.+.++|..+. ....+++.+...|-. .| .|+ |.+++.- ..-+.
T Consensus 53 kT~~~L~~Aa~~i~~i~~~------~~Il~Vstr~~-------~~~~V~k~A~~tg~~-~i~~Rw~pGtlTN~~-~~~f~ 117 (249)
T PTZ00254 53 KTWEKLKLAARVIAAIENP------ADVVVVSSRPY-------GQRAVLKFAQYTGAS-AIAGRFTPGTFTNQI-QKKFM 117 (249)
T ss_pred HHHHHHHHHHHHHHHHhCC------CcEEEEEcCHH-------HHHHHHHHHHHhCCe-EECCcccCCCCCCcc-ccccC
Confidence 4445555555444332 22 35667776542 225566666666521 11 233 4444432 23345
Q ss_pred hcceEEeCCCCCCCCccHHhhhhcCCCEEE-ecCCCcccce
Q psy12587 283 FCHCIIYTPSNEHFGIVPIEAMFCKRPVIA-VNSGGPKESV 322 (390)
Q Consensus 283 ~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~-~~~~~~~e~i 322 (390)
.-|++++.. ...-...+.||...|+|||+ .|+...++++
T Consensus 118 ~P~llIV~D-p~~d~qAI~EA~~lnIPvIal~DTds~p~~V 157 (249)
T PTZ00254 118 EPRLLIVTD-PRTDHQAIREASYVNIPVIALCDTDSPLEYV 157 (249)
T ss_pred CCCEEEEeC-CCcchHHHHHHHHhCCCEEEEecCCCCcccC
Confidence 556655532 12234679999999999999 4444444544
No 388
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=30.90 E-value=3.6e+02 Score=23.50 Aligned_cols=128 Identities=13% Similarity=0.025 Sum_probs=63.2
Q ss_pred HHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEE-eecccccCC
Q psy12587 130 EWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLS-INRYERKKN 208 (390)
Q Consensus 130 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~-~g~~~~~K~ 208 (390)
..+++.||.|++........+.+.++ . ..++.-+ + +. . .......+.+.+ ..+....++. .|.-.-.--
T Consensus 32 l~~L~~aDvI~~edtr~t~~ll~~~~-i-~~~~~~~-~--~~-~-~~~~~~~i~~~l---~~G~~ValvSdaGdP~I~dp 101 (287)
T PRK14994 32 LEVLQAVDLIAAEDTRHTGLLLQHFA-I-NARLFAL-H--DH-N-EQQKAETLLAKL---QEGQNIALVSDAGTPLINDP 101 (287)
T ss_pred HHHHHhCCEEEEeCCcchHHHHhhcC-C-CCEEEEc-c--CC-C-HHHHHHHHHHHH---HCCCeEEEEccCCCCceeCC
Confidence 34578899999876554444556554 2 1122111 1 11 0 000011122222 2334444444 454332222
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEecCCCh------HHHHHHH
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLTSPSD------AAKISLF 281 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g~~~~------~e~~~~~ 281 (390)
...+++.+.+ . ++.+.++.+. ..+...+...|++ +++.|.|++|. .++.++.
T Consensus 102 g~~Lv~~~~~---~-------gi~v~vIPGi-----------SA~~aA~a~sG~~~~~f~f~Gflp~~~~~r~~~L~~l~ 160 (287)
T PRK14994 102 GYHLVRTCRE---A-------GIRVVPLPGP-----------CAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKALE 160 (287)
T ss_pred HHHHHHHHHH---C-------CCCEEEeCCH-----------HHHHHHHHHcCCCCCcceEeEECCCCCchHHHHHHHHh
Confidence 3344444443 2 2666666544 5666666677774 66778888873 3566666
Q ss_pred HhcceEE
Q psy12587 282 KFCHCII 288 (390)
Q Consensus 282 ~~adv~v 288 (390)
...+-+|
T Consensus 161 ~~~~t~V 167 (287)
T PRK14994 161 AEPRTLI 167 (287)
T ss_pred cCCCeEE
Confidence 6666433
No 389
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=30.88 E-value=2.1e+02 Score=25.28 Aligned_cols=55 Identities=7% Similarity=0.093 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhhcCCCEEEe
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~ 313 (390)
+..+..+++++++ ..+-+. .++++. .|+++..+....-.-.+..|+..|++|++=
T Consensus 41 ~~a~~~a~~~~~~-----~~~~~~---~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~E 97 (342)
T COG0673 41 ERAEAFAEEFGIA-----KAYTDL---EELLADPDIDAVYIATPNALHAELALAALEAGKHVLCE 97 (342)
T ss_pred HHHHHHHHHcCCC-----cccCCH---HHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEc
Confidence 6788888888864 222233 356776 477766554332233458899999999984
No 390
>PRK08005 epimerase; Validated
Probab=30.73 E-value=3.1e+02 Score=22.61 Aligned_cols=48 Identities=6% Similarity=-0.087 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCc
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGI 298 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~ 298 (390)
.+.-+.+++.|..-.+-+-+..+-+.+..++...|.+++-|..-||+.
T Consensus 96 ~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~G 143 (210)
T PRK08005 96 SEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRG 143 (210)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCcc
Confidence 667788889998888888888888888899999998887776666553
No 391
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=30.04 E-value=3.1e+02 Score=22.46 Aligned_cols=30 Identities=10% Similarity=0.041 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHhhcccccccceEEEEEcCCCC
Q psy12587 207 KNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDP 241 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~ 241 (390)
..+..+++.+..+..... ..++.|+|.|..
T Consensus 66 y~v~~l~~~~~~~l~~~~-----~~rV~IIGaG~i 95 (213)
T PRK05472 66 YNVEELLEFIEKILGLDR-----TWNVALVGAGNL 95 (213)
T ss_pred eeHHHHHHHHHHHhCCCC-----CcEEEEECCCHH
Confidence 467788888888776554 378888888754
No 392
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=30.01 E-value=1.7e+02 Score=29.07 Aligned_cols=76 Identities=16% Similarity=0.020 Sum_probs=43.2
Q ss_pred cCCChHHHHHHHHhcceEEeCC--CCCCCCccHHhhhhcC------CCEEEecCCCcccceecCcceeeecC---CHHHH
Q psy12587 270 TSPSDAAKISLFKFCHCIIYTP--SNEHFGIVPIEAMFCK------RPVIAVNSGGPKESVVDGRTGFLCES---NEEAF 338 (390)
Q Consensus 270 g~~~~~e~~~~~~~adv~v~ps--~~e~~~~~~~Ea~a~G------~pvi~~~~~~~~e~i~~~~~g~~~~~---~~~~l 338 (390)
-+++.+-+.++.+...++|.-- ..-|+|-.+.|+++-. +|+. ..|...+++.++....+... |++.+
T Consensus 581 kPlD~~~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~l~~~~~~~~~~~v~--~~Gi~d~F~~~G~~~~L~~~~GL~~e~I 658 (677)
T PLN02582 581 KPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWR--PLVLPDRYIDHGAPADQLAEAGLTPSHI 658 (677)
T ss_pred CCCCHHHHHHHhhhCCEEEEECCCCCCcHHHHHHHHHHhcCCccCCceeE--EecCCCcccCcCCHHHHHHHhCcCHHHH
Confidence 3455555566666676655431 1256777788877643 3332 23333455555544434332 78888
Q ss_pred HHHHHHHhc
Q psy12587 339 AKAMKKIVD 347 (390)
Q Consensus 339 ~~~i~~l~~ 347 (390)
++.|.+++.
T Consensus 659 ~~~i~~~l~ 667 (677)
T PLN02582 659 AATVLNVLG 667 (677)
T ss_pred HHHHHHHHh
Confidence 888887764
No 393
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=29.99 E-value=3.3e+02 Score=22.86 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEE--EecC-----CChHHH-
Q psy12587 206 KKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVL--FLTS-----PSDAAK- 277 (390)
Q Consensus 206 ~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~--~~g~-----~~~~e~- 277 (390)
..|+..+++.+ +++ ++++.|+.++.. ..++...+.+++.+.+. +.+. -|+.+.
T Consensus 110 ~pgv~e~L~~L---~~~-------g~~l~I~Tn~~~---------~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~ 170 (248)
T PLN02770 110 LNGLYKLKKWI---EDR-------GLKRAAVTNAPR---------ENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPY 170 (248)
T ss_pred CccHHHHHHHH---HHc-------CCeEEEEeCCCH---------HHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHH
Confidence 34555555544 343 377888777654 66777777787754322 2221 244332
Q ss_pred HHHHHhcceEEeCCC---CCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeec
Q psy12587 278 ISLFKFCHCIIYTPS---NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCE 332 (390)
Q Consensus 278 ~~~~~~adv~v~ps~---~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~ 332 (390)
...+.... +-|.. .+-...=+.-|.++|.++|.-..+...+.+......++++
T Consensus 171 ~~a~~~~~--~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~ 226 (248)
T PLN02770 171 LKALEVLK--VSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIK 226 (248)
T ss_pred HHHHHHhC--CChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEec
Confidence 22222222 11111 1112233556778999999876654433333323445666
No 394
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=29.82 E-value=1.4e+02 Score=18.33 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=38.5
Q ss_pred eEEEEEcCC--CCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 231 VKLVVAGGY--DPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 231 ~~l~i~G~~--~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
..+.+.|.. ... ..+++++..+|- .+. ..++ ..+..+|.+..... ....+|...|+
T Consensus 2 ~~~~i~g~~~~~~~--------~~l~~~i~~~Gg--~v~--~~~~--------~~~thvI~~~~~~~--~~~~~~~~~~~ 59 (72)
T cd00027 2 LTFVITGDLPSEER--------DELKELIEKLGG--KVT--SSVS--------KKTTHVIVGSDAGP--KKLLKAIKLGI 59 (72)
T ss_pred CEEEEEecCCCcCH--------HHHHHHHHHcCC--EEe--cccc--------CCceEEEECCCCCc--hHHHHHHHcCC
Confidence 567788865 332 889999998873 222 2222 45566666543221 12678888999
Q ss_pred CEEEec
Q psy12587 309 PVIAVN 314 (390)
Q Consensus 309 pvi~~~ 314 (390)
|+|..+
T Consensus 60 ~iV~~~ 65 (72)
T cd00027 60 PIVTPE 65 (72)
T ss_pred eEecHH
Confidence 998764
No 395
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=29.66 E-value=2.6e+02 Score=24.10 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=52.1
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
+.-+|+..|.-. .+.+++....+.+. ++++++.-+.|.. ++ ..+-+...+.|++ |.+ +
T Consensus 107 ~~~~ILT~~~S~------~v~~~l~~a~~~~~-----~~~V~v~es~P~~--eG----~~~a~~L~~~gi~--v~~---i 164 (282)
T PF01008_consen 107 DGDTILTHGYSS------TVERFLLSAKKKGK-----KFRVIVLESRPYN--EG----RLMAKELAEAGIP--VTL---I 164 (282)
T ss_dssp TTEEEEEES--S------HHHHHHHHHHHTTE-----EEEEEEE--TTTT--HH----HTHHHHHHHTT-E--EEE---E
T ss_pred CCeEEEEeCCch------HHHHHHHHHHHcCC-----eEEEEEccCCcch--hh----hhHHHHhhhccee--EEE---E
Confidence 344566666432 24555555555544 3888888776643 11 2233333444542 443 5
Q ss_pred ChHHHHHHHHh-cceEEeCCC---CCC-----CCc--cHHhhhhcCCCEEEe
Q psy12587 273 SDAAKISLFKF-CHCIIYTPS---NEH-----FGI--VPIEAMFCKRPVIAV 313 (390)
Q Consensus 273 ~~~e~~~~~~~-adv~v~ps~---~e~-----~~~--~~~Ea~a~G~pvi~~ 313 (390)
++..+..+|+. +|.+++... .+| .|. ..+=|-.+++||++-
T Consensus 165 ~d~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~ 216 (282)
T PF01008_consen 165 PDSAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVL 216 (282)
T ss_dssp -GGGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE
T ss_pred echHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEE
Confidence 67778899999 999888654 233 122 123355689999884
No 396
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=29.63 E-value=3e+02 Score=27.89 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEecC-----------CC------
Q psy12587 212 AIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLTS-----------PS------ 273 (390)
Q Consensus 212 ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g~-----------~~------ 273 (390)
++.+++...++.. +.++++.|.|... --+-+++...|+. +++.+... ++
T Consensus 172 l~na~~~~~~~~~-----~~~iv~~GaGaag--------~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~ 238 (752)
T PRK07232 172 LLNALELVGKKIE-----DVKIVVSGAGAAA--------IACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAY 238 (752)
T ss_pred HHHHHHHhCCChh-----hcEEEEECccHHH--------HHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHH
Confidence 3455554444444 4899999988654 4455555556764 35544321 11
Q ss_pred -----hHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 274 -----DAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 274 -----~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
...+.+.++.+|+++-.|....|.--+++.|+ ..|+|-
T Consensus 239 a~~~~~~~l~~~i~~~~v~iG~s~~g~~~~~~v~~M~-~~piif 281 (752)
T PRK07232 239 AVDTDARTLAEAIEGADVFLGLSAAGVLTPEMVKSMA-DNPIIF 281 (752)
T ss_pred hccCCCCCHHHHHcCCCEEEEcCCCCCCCHHHHHHhc-cCCEEE
Confidence 12357788889999987764445555777776 467665
No 397
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=29.52 E-value=2.8e+02 Score=21.81 Aligned_cols=95 Identities=17% Similarity=0.101 Sum_probs=52.3
Q ss_pred ceEEEEEcCCCC-CCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 230 HVKLVVAGGYDP-HNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 230 ~~~l~i~G~~~~-~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
+-++.|+|.|.- . ..+.+...+.|. +|.+..+. .+++.+.+++||+++....... +.-.|.+.-|
T Consensus 44 gk~vlViG~G~~~G--------~~~a~~L~~~g~--~V~v~~r~-~~~l~~~l~~aDiVIsat~~~~--ii~~~~~~~~- 109 (168)
T cd01080 44 GKKVVVVGRSNIVG--------KPLAALLLNRNA--TVTVCHSK-TKNLKEHTKQADIVIVAVGKPG--LVKGDMVKPG- 109 (168)
T ss_pred CCEEEEECCcHHHH--------HHHHHHHhhCCC--EEEEEECC-chhHHHHHhhCCEEEEcCCCCc--eecHHHccCC-
Confidence 478999999852 2 335555555553 46666653 3567899999999998654322 2223333223
Q ss_pred CEEEecCCCcccceecCcceeeecC-CHHHHHHH
Q psy12587 309 PVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKA 341 (390)
Q Consensus 309 pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~ 341 (390)
.+.-|.+-.+++ + ..+|-++-. |.+...+.
T Consensus 110 -~viIDla~prdv-d-~~~~~~~G~~d~~~~~~~ 140 (168)
T cd01080 110 -AVVIDVGINRVP-D-KSGGKLVGDVDFESAKEK 140 (168)
T ss_pred -eEEEEccCCCcc-c-ccCCCeeCCcCHHHHHhh
Confidence 444454433322 1 223445544 65554444
No 398
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=29.29 E-value=4.9e+02 Score=24.52 Aligned_cols=169 Identities=9% Similarity=0.066 Sum_probs=86.1
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCcc---chhhhcCCCCCCCCeEEEEeecc---ccc
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPE---PIENVLNPLPGKEDIVFLSINRY---ERK 206 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~i~~~g~~---~~~ 206 (390)
+.-.|.|+--.+...+.+.+.....+..+...+...+-....-..-.. .+++.. +. -+++.+....+ ...
T Consensus 99 l~E~diVfGge~kL~~aI~e~~~~~p~p~~I~V~stC~~~lIGDDi~~v~~e~~~~~---~~-~pvv~v~t~gf~g~s~~ 174 (457)
T TIGR01284 99 LKESHVVFGGEKKLKRCILEAFREFPEIKRMYTYATCTTALIGDDIDAIAREVMEEI---PD-VDVFAINAPGFAGPSQS 174 (457)
T ss_pred CCCCceEecHHHHHHHHHHHHHHhCCCCceEEEECCChHHhhccCHHHHHHHHHHhc---CC-CeEEEeeCCCcCCcccc
Confidence 555677777777777777776544422233333333322222111111 111111 11 12222211222 224
Q ss_pred CCHHHHHHHHH-HHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcc
Q psy12587 207 KNLELAIYSLN-SLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCH 285 (390)
Q Consensus 207 K~~~~ll~a~~-~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad 285 (390)
.|.+...+++- ++....+.....+-.+.|+|..... .=..+++++.++.|+..+..+.|..+-+|+ .-+..|+
T Consensus 175 ~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~-----gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei-~~~~~A~ 248 (457)
T TIGR01284 175 KGHHVANITWINDKVGTAEPEITTEYDVNLIGEYNIQ-----GDLWVLKKYFERMGIQVLSTFTGNGCYDEL-RWMHRAK 248 (457)
T ss_pred hHHHHHHHHHHHHHhCccCcccCCCCeEEEEccCCch-----hhHHHHHHHHHHcCCeEEEEECCCCCHHHH-HhccccC
Confidence 56766666533 3332110000112467777854322 112678999999999777788888887875 4577777
Q ss_pred eEEeCCCCCCCCccHHhhhh--cCCCEEEe
Q psy12587 286 CIIYTPSNEHFGIVPIEAMF--CKRPVIAV 313 (390)
Q Consensus 286 v~v~ps~~e~~~~~~~Ea~a--~G~pvi~~ 313 (390)
+-+..... .+..+.++|. +|+|.+..
T Consensus 249 lniv~~~~--~~~~~A~~Le~~~GiP~~~~ 276 (457)
T TIGR01284 249 LNVVRCAR--SANYIANELEERYGIPRLDI 276 (457)
T ss_pred EEEEEChH--HHHHHHHHHHHHhCCCeEec
Confidence 75543321 2344555554 69998865
No 399
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.24 E-value=1.1e+02 Score=23.46 Aligned_cols=71 Identities=7% Similarity=-0.041 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceec
Q psy12587 250 YKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD 324 (390)
Q Consensus 250 ~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~ 324 (390)
.+++.+.+++++++ |.|.-..+..- .--.....++..+-.|.--.-++|-.--|=-||+.|.+-...++..
T Consensus 14 k~~i~r~A~r~~~~--v~~Van~~~~~--~~~~~i~~v~V~~g~DaaD~~Iv~~a~~gDlVVT~Di~LA~~ll~k 84 (150)
T COG1671 14 KDEIYRVAERMGLK--VTFVANFPHRV--PPSPEIRTVVVDAGFDAADDWIVNLAEKGDLVVTADIPLASLLLDK 84 (150)
T ss_pred HHHHHHHHHHhCCe--EEEEeCCCccC--CCCCceeEEEecCCcchHHHHHHHhCCCCCEEEECchHHHHHHHhc
Confidence 37888888888863 55543222210 0011222333333344444457777777888888888766666644
No 400
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=28.98 E-value=4.2e+02 Score=23.61 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=39.8
Q ss_pred EEecCCChHHHHHHHHhcceEEeCCC---CCCCCccHHhhhhcC------CCEEEecCCCcccceecCc--ceeeecCCH
Q psy12587 267 LFLTSPSDAAKISLFKFCHCIIYTPS---NEHFGIVPIEAMFCK------RPVIAVNSGGPKESVVDGR--TGFLCESNE 335 (390)
Q Consensus 267 ~~~g~~~~~e~~~~~~~adv~v~ps~---~e~~~~~~~Ea~a~G------~pvi~~~~~~~~e~i~~~~--~g~~~~~~~ 335 (390)
.++-+++.+.+.+.++.++.++..-. .-|+|-.+.|.++.. .|+.--+. .......+. .-+..+ +.
T Consensus 236 ~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~--~~~~~~~~~~le~~~l~-~~ 312 (327)
T PRK09212 236 RTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTG--KDVPLPYAANLEKLALP-SE 312 (327)
T ss_pred ecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcC--CCccCCchHHHHHhcCC-CH
Confidence 34445666777777888776554322 245566666666543 24443322 111111110 011122 77
Q ss_pred HHHHHHHHHHhc
Q psy12587 336 EAFAKAMKKIVD 347 (390)
Q Consensus 336 ~~l~~~i~~l~~ 347 (390)
+++++++.++++
T Consensus 313 ~~I~~~i~~~~~ 324 (327)
T PRK09212 313 EDIIEAVKKVCY 324 (327)
T ss_pred HHHHHHHHHHHh
Confidence 888888887763
No 401
>PRK12861 malic enzyme; Reviewed
Probab=28.96 E-value=2.6e+02 Score=28.35 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEec--------C---CCh-----
Q psy12587 212 AIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLT--------S---PSD----- 274 (390)
Q Consensus 212 ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g--------~---~~~----- 274 (390)
++.|++...++.. +.++++.|.|... --+-++....|+. +++.+.. . +++
T Consensus 176 llnal~~~gk~l~-----d~~iv~~GAGaAg--------~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~ 242 (764)
T PRK12861 176 FINGLKVVGKSIK-----EVKVVTSGAGAAA--------LACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERF 242 (764)
T ss_pred HHHHHHHhCCChh-----HcEEEEECHhHHH--------HHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHH
Confidence 3455554444444 3889999988653 3444555556664 2554433 1 111
Q ss_pred ------HHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 275 ------AAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 275 ------~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
..+.+.++.+|+++-.|....|.--++++|+- .|+|-
T Consensus 243 a~~~~~~~L~eai~~advliG~S~~g~ft~e~v~~Ma~-~PIIF 285 (764)
T PRK12861 243 AQETDARTLAEVIGGADVFLGLSAGGVLKAEMLKAMAA-RPLIL 285 (764)
T ss_pred HhhcCCCCHHHHHhcCCEEEEcCCCCCCCHHHHHHhcc-CCEEE
Confidence 23577888899998877543344456677765 56655
No 402
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=28.88 E-value=3.9e+02 Score=23.25 Aligned_cols=95 Identities=9% Similarity=0.068 Sum_probs=60.4
Q ss_pred chhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc-------ceEEeCCCCCCCCcc---HHhhhhcCCCEE
Q psy12587 245 ENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC-------HCIIYTPSNEHFGIV---PIEAMFCKRPVI 311 (390)
Q Consensus 245 ~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a-------dv~v~ps~~e~~~~~---~~Ea~a~G~pvi 311 (390)
.+.+++.++-+.+.+.|. +.|.+ .|...+.++.++++.. .+-++. ...+|+. .++|+.+|.-.|
T Consensus 152 ~~~~~~~~~~~~~~~~G~-d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~--Hn~~Gla~AN~laA~~aG~~~i 228 (287)
T PRK05692 152 VPPEAVADVAERLFALGC-YEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHF--HDTYGQALANIYASLEEGITVF 228 (287)
T ss_pred CCHHHHHHHHHHHHHcCC-cEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEe--cCCCCcHHHHHHHHHHhCCCEE
Confidence 345677777777778885 56766 4666777766665542 233332 3445553 688999999999
Q ss_pred EecCCCccc-ceecCcceeeecCCHHHHHHHHHHH
Q psy12587 312 AVNSGGPKE-SVVDGRTGFLCESNEEAFAKAMKKI 345 (390)
Q Consensus 312 ~~~~~~~~e-~i~~~~~g~~~~~~~~~l~~~i~~l 345 (390)
-+..+|+.+ -+..|..|-. ..|+++..+...
T Consensus 229 d~s~~GlGecpfa~g~aGN~---~~E~lv~~L~~~ 260 (287)
T PRK05692 229 DASVGGLGGCPYAPGASGNV---ATEDVLYMLHGL 260 (287)
T ss_pred EEEccccCCCCCCCCccccc---cHHHHHHHHHhc
Confidence 999888876 1222222211 678888877653
No 403
>KOG3339|consensus
Probab=28.85 E-value=1.2e+02 Score=24.23 Aligned_cols=17 Identities=41% Similarity=1.075 Sum_probs=13.7
Q ss_pred cCCCEEEEcccccchhH
Q psy12587 75 EKPDLVFCDLVSICIPI 91 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~ 91 (390)
.+||+|.++++.+..++
T Consensus 131 irPdlil~NGPGTCv~i 147 (211)
T KOG3339|consen 131 IRPDLILCNGPGTCVPI 147 (211)
T ss_pred cCCCEEEECCCCcEeHH
Confidence 78999999997765543
No 404
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=28.79 E-value=3.8e+02 Score=23.11 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=47.0
Q ss_pred CCcEEEecC-CChH---HHHHHHHhcceEEeC-CCCCCCCcc--HHhhhhcCCCEEEecCCCcccceecCcceeeecCCH
Q psy12587 263 SDNVLFLTS-PSDA---AKISLFKFCHCIIYT-PSNEHFGIV--PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNE 335 (390)
Q Consensus 263 ~~~v~~~g~-~~~~---e~~~~~~~adv~v~p-s~~e~~~~~--~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~ 335 (390)
.++|.+.|. ++.. ...+.+++||++|+- +.....|.. +..|...|.|+|.-+.+..+ +.+....+.+..+.
T Consensus 175 rP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~--~~~~~~d~~i~~~~ 252 (271)
T PTZ00409 175 KPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTY--ITNRISDYHVRAKF 252 (271)
T ss_pred cCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCC--CCCccccEEEECcH
Confidence 366777776 6653 335677889987764 333333432 23477889999987765432 11111234454466
Q ss_pred HHHHHHHHHHhcC
Q psy12587 336 EAFAKAMKKIVDN 348 (390)
Q Consensus 336 ~~l~~~i~~l~~~ 348 (390)
.++.. +.+++..
T Consensus 253 ~~~~~-~~~~~~~ 264 (271)
T PTZ00409 253 SELAQ-ISDILKG 264 (271)
T ss_pred HHHHH-HHHHhcc
Confidence 66664 3354443
No 405
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=28.66 E-value=2.9e+02 Score=26.88 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=52.3
Q ss_pred EEecCCChHHHHHHHHhcceEEeCC---CCCCCCccHHhhhhc-C--CCEEEecCCCcccceecCcceeeecC---CHHH
Q psy12587 267 LFLTSPSDAAKISLFKFCHCIIYTP---SNEHFGIVPIEAMFC-K--RPVIAVNSGGPKESVVDGRTGFLCES---NEEA 337 (390)
Q Consensus 267 ~~~g~~~~~e~~~~~~~adv~v~ps---~~e~~~~~~~Ea~a~-G--~pvi~~~~~~~~e~i~~~~~g~~~~~---~~~~ 337 (390)
.|.-+++.+-+.++....++++.-. ...|||..++|+++. | +||.. .+-..+++.++...-+... |.+.
T Consensus 536 rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~--lglpd~fi~hg~~~el~~~~gLd~~~ 613 (627)
T COG1154 536 RFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLN--LGLPDEFIDHGSPEELLAELGLDAEG 613 (627)
T ss_pred eecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCCCceEE--ecCChHhhccCCHHHHHHHcCCCHHH
Confidence 4566677777778888888877643 357899999998874 5 34443 3444556666554333322 7888
Q ss_pred HHHHHHHHhcC
Q psy12587 338 FAKAMKKIVDN 348 (390)
Q Consensus 338 l~~~i~~l~~~ 348 (390)
+++.|..++..
T Consensus 614 i~~~i~~~l~~ 624 (627)
T COG1154 614 IARRILEWLKA 624 (627)
T ss_pred HHHHHHHHHhh
Confidence 88888777643
No 406
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=28.03 E-value=4.5e+02 Score=26.15 Aligned_cols=38 Identities=11% Similarity=0.050 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeC
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYT 290 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~p 290 (390)
..+++++.+++++ +.-...++..+..+.++ +.|++++.
T Consensus 43 ~~v~~~a~~~~ip--~~~~~~~~~~~~~~~l~~~~~D~iv~~ 82 (660)
T PRK08125 43 GSVARLAAELGIP--VYAPEDVNHPLWVERIRELAPDVIFSF 82 (660)
T ss_pred CHHHHHHHHcCCc--EEeeCCCCcHHHHHHHHhcCCCEEEEc
Confidence 3566666666653 22233344433333333 34555543
No 407
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=27.86 E-value=3.3e+02 Score=25.50 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=23.0
Q ss_pred HHHHHHHHh--cceEEeCCCCCCC-Cc-cHHhhhhcCCCEEEecC
Q psy12587 275 AAKISLFKF--CHCIIYTPSNEHF-GI-VPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 275 ~e~~~~~~~--adv~v~ps~~e~~-~~-~~~Ea~a~G~pvi~~~~ 315 (390)
+.+.++... +|++|..-. |+ |+ ..++|+.+|+.|...+-
T Consensus 139 egl~~la~~~evDiVV~AIv--G~aGL~pTl~AIkaGK~VALANK 181 (454)
T PLN02696 139 EGIVEVARHPEAVTVVTGIV--GCAGLKPTVAAIEAGKDIALANK 181 (454)
T ss_pred HHHHHHHcCCCCCEEEEeCc--cccchHHHHHHHHCCCcEEEecH
Confidence 334445553 466665322 22 33 35899999999877663
No 408
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=27.67 E-value=4.3e+02 Score=23.36 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=10.4
Q ss_pred eEEEccHhHHHHHHH
Q psy12587 138 KIVVNSEFTKSVVQA 152 (390)
Q Consensus 138 ~ii~~s~~~~~~~~~ 152 (390)
.|+.+|+..++.+..
T Consensus 30 ~VIlvsDn~aD~~lA 44 (337)
T COG2247 30 VVILVSDNEADLLLA 44 (337)
T ss_pred EEEEecchHHHHHHh
Confidence 677777777776554
No 409
>KOG1185|consensus
Probab=27.58 E-value=5.4e+02 Score=24.42 Aligned_cols=72 Identities=15% Similarity=0.023 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE--ecCCCh-------HHHH
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF--LTSPSD-------AAKI 278 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~--~g~~~~-------~e~~ 278 (390)
....+.+++..+++.- -.|+++|.|....+. .+++++.++..|++=--.= .|-+++ ..-.
T Consensus 203 ~~s~i~~av~llk~AK-------rPLlvvGkgAa~~~a----e~~l~~~Ve~~glPflptpMgKGll~d~hPl~v~~aRS 271 (571)
T KOG1185|consen 203 PPSQIQKAVQLLKSAK-------RPLLVVGKGAAYAPA----EDQLRKFVETTGLPFLPTPMGKGLLPDNHPLNVSSARS 271 (571)
T ss_pred CHHHHHHHHHHHHhcC-------CcEEEEecccccCcc----HHHHHHHHHhcCCCcccCcccccCCCCCCchhhhHHHH
Confidence 4566777777766542 349999988654331 1789999999887510000 111222 2235
Q ss_pred HHHHhcceEEeC
Q psy12587 279 SLFKFCHCIIYT 290 (390)
Q Consensus 279 ~~~~~adv~v~p 290 (390)
..++.||++++.
T Consensus 272 ~ALk~ADvvll~ 283 (571)
T KOG1185|consen 272 LALKKADVVLLA 283 (571)
T ss_pred HHHhhCCEEEEe
Confidence 789999998874
No 410
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=27.55 E-value=1.6e+02 Score=24.64 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=8.4
Q ss_pred eEEEEEcCCCCC
Q psy12587 231 VKLVVAGGYDPH 242 (390)
Q Consensus 231 ~~l~i~G~~~~~ 242 (390)
.++.|+|.|+..
T Consensus 3 ~~VyFIGAGPGd 14 (254)
T COG2875 3 MKVYFIGAGPGD 14 (254)
T ss_pred ceEEEEccCCCC
Confidence 467778877765
No 411
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=27.44 E-value=3.9e+02 Score=22.83 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC 284 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a 284 (390)
.++.+.++++..++.+.. +.+.. +...+...+|+.++-+.+.+.|. +.|.+ .|...+.++.++++..
T Consensus 112 ~~~~~~~~i~~a~~~G~~-----v~~~~----~~~~~~~~~~~~~~~~~~~~~G~-~~i~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 112 VLERAVEAVEYAKSHGLD-----VEFSA----EDATRTDLDFLIEVVEAAIEAGA-TTINIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred HHHHHHHHHHHHHHcCCe-----EEEee----ecCCCCCHHHHHHHHHHHHHcCC-CEEEECCCCCCCCHHHHHHHHHHH
Confidence 456667777777776542 44322 12222345666777777777775 56666 4666777766655543
Q ss_pred c-------eEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHH
Q psy12587 285 H-------CIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKI 345 (390)
Q Consensus 285 d-------v~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l 345 (390)
. +-+.--....+|+. .++|+.+|.-.|-+..+|+.+- .|-. ..|+++..+...
T Consensus 182 ~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~~-----aGN~---~tE~lv~~L~~~ 244 (268)
T cd07940 182 KENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGER-----AGNA---ALEEVVMALKTR 244 (268)
T ss_pred HHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccccc-----cccc---cHHHHHHHHHhc
Confidence 1 22222224455553 6899999999999988888752 2211 567888777665
No 412
>PRK04148 hypothetical protein; Provisional
Probab=27.39 E-value=91 Score=23.49 Aligned_cols=15 Identities=7% Similarity=-0.011 Sum_probs=12.6
Q ss_pred hh-HhhhhcCCceeec
Q psy12587 11 TA-TAWGATGPRTTAH 25 (390)
Q Consensus 11 ~l-~~L~~~G~~V~~~ 25 (390)
.+ ..|++.||+|+.+
T Consensus 30 ~vA~~L~~~G~~ViaI 45 (134)
T PRK04148 30 KVAKKLKESGFDVIVI 45 (134)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 46 7788899999988
No 413
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=27.07 E-value=1e+02 Score=20.35 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=20.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHH
Q psy12587 341 AMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSI 375 (390)
Q Consensus 341 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (390)
-|+.++++|+ ..-.+.+.+.++..-+|+.....+
T Consensus 4 ~I~h~l~np~-DiP~ipra~aeyLqvrfN~~yl~~ 37 (77)
T PF10911_consen 4 PIQHLLDNPD-DIPDIPRAAAEYLQVRFNAAYLMA 37 (77)
T ss_pred hHHHHhcCCc-ccCCccHHHHHHHHHHhcHHHHHH
Confidence 3556666666 666666666666666666655433
No 414
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=27.03 E-value=1.4e+02 Score=26.25 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=39.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCE
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPV 310 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pv 310 (390)
.--+|+|.-... ......+.+++++++.|....+...|.++.+.+..+ ...|++|..+-.+ +++.+.-.+-+||
T Consensus 211 ~~GIiv~tl~~q--~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf-~eid~fV~~aCPr---~~idd~~~f~kPv 284 (307)
T PF01866_consen 211 TFGIIVGTLGGQ--GYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANF-PEIDAFVQIACPR---LSIDDSKDFYKPV 284 (307)
T ss_dssp EEEEEEE-STTT----HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS----SEEEE-S-TH---HHHT--S--SS-E
T ss_pred EEEEEEecCCCC--CCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcC-cccCEEEEecCCC---cccCchhhcCCcc
Confidence 344556643332 122444678888888887667777899888876554 5789999866321 3456677778888
Q ss_pred EEec
Q psy12587 311 IAVN 314 (390)
Q Consensus 311 i~~~ 314 (390)
|++-
T Consensus 285 ltP~ 288 (307)
T PF01866_consen 285 LTPY 288 (307)
T ss_dssp E-HH
T ss_pred cCHH
Confidence 7754
No 415
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=26.88 E-value=1.8e+02 Score=21.81 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHH
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLF 281 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~ 281 (390)
+.+.+++++++ +..|.+...-...++...+
T Consensus 37 ~~L~~q~~~f~-p~~v~i~~~~~~~~l~~~~ 66 (129)
T PF02670_consen 37 EKLAEQAREFK-PKYVVIADEEAYEELKKAL 66 (129)
T ss_dssp HHHHHHHHHHT--SEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCEEEEcCHHHHHHHHHHh
Confidence 77777777775 3455444333333344444
No 416
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=26.84 E-value=4.1e+02 Score=23.61 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcc--eEEeCCCCCCCCccHHhhhh-cCCCEEEec
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCH--CIIYTPSNEHFGIVPIEAMF-CKRPVIAVN 314 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad--v~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~ 314 (390)
++..++.+.+++.|+ +.+..+.+... .+++..-+ ++=.+| .|.--..++|+.| .|+|+|.|.
T Consensus 90 e~~~~Lke~a~~~Gi---~~~SSPfd~~s-vd~l~~~~~~ayKIaS-~E~~~~plik~iA~~~kPiIlST 154 (347)
T COG2089 90 EWHAQLKEYARKRGI---IFFSSPFDLTA-VDLLESLNPPAYKIAS-GEINDLPLIKYIAKKGKPIILST 154 (347)
T ss_pred HHHHHHHHHHHHcCe---EEEecCCCHHH-HHHHHhcCCCeEEecC-ccccChHHHHHHHhcCCCEEEEc
Confidence 344666777776653 44444444443 34454433 333333 4444556777665 578888765
No 417
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=26.82 E-value=4e+02 Score=22.70 Aligned_cols=116 Identities=12% Similarity=0.030 Sum_probs=59.1
Q ss_pred HHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCH
Q psy12587 130 EWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNL 209 (390)
Q Consensus 130 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~ 209 (390)
+.+++.||.|+.-+-.+.-..+..++.. ..---+|+|.- . .+-+.. .. ....|.+.|. -.
T Consensus 59 ~~~i~~A~li~pDG~gvV~~ar~~~g~~----~~~rv~G~Dl~--~-----~Ll~~a---~~-~~~~vfllGg-----kp 118 (253)
T COG1922 59 REILNQADLILPDGIGVVRAARRLLGQP----LPERVAGTDLV--E-----ALLKRA---AE-EGKRVFLLGG-----KP 118 (253)
T ss_pred HHHHhhcCEEccCchhHHHHHHHHhCcc----CcccCChHHHH--H-----HHHHHh---Cc-cCceEEEecC-----CH
Confidence 4557788888888877777665655421 11112333321 0 111111 11 2234455554 24
Q ss_pred HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-CChHH
Q psy12587 210 ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-PSDAA 276 (390)
Q Consensus 210 ~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~-~~~~e 276 (390)
+.+-+|...+..+.|. +.|+|..+......++ +.+.+.+...+ ..+.+.|- +|.+|
T Consensus 119 ~V~~~a~~~l~~~~p~-------l~ivg~h~GYf~~~e~--~~i~~~I~~s~--pdil~VgmG~P~QE 175 (253)
T COG1922 119 GVAEQAAAKLRAKYPG-------LKIVGSHDGYFDPEEE--EAIVERIAASG--PDILLVGMGVPRQE 175 (253)
T ss_pred HHHHHHHHHHHHHCCC-------ceEEEecCCCCChhhH--HHHHHHHHhcC--CCEEEEeCCCchhH
Confidence 6677778888888763 4455544322222222 34555555554 45667665 55554
No 418
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=26.53 E-value=1.6e+02 Score=24.93 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcce--EEeCCCCCCCCccHHhhhh-cCCCEEEecC
Q psy12587 250 YKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHC--IIYTPSNEHFGIVPIEAMF-CKRPVIAVNS 315 (390)
Q Consensus 250 ~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv--~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~ 315 (390)
+.++.+.+++.|+ .|.-..-+.+-.+++.+.++ +=.+| .|-....+++++| .|+|||.|-.
T Consensus 58 ~~~L~~~~~~~gi----~f~stpfd~~s~d~l~~~~~~~~KIaS-~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 58 HKELFEYCKELGI----DFFSTPFDEESVDFLEELGVPAYKIAS-GDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp HHHHHHHHHHTT-----EEEEEE-SHHHHHHHHHHT-SEEEE-G-GGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred HHHHHHHHHHcCC----EEEECCCCHHHHHHHHHcCCCEEEecc-ccccCHHHHHHHHHhCCcEEEECC
Confidence 3677777777664 23222222222455555443 32233 3334456777666 6899888764
No 419
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=26.37 E-value=86 Score=26.88 Aligned_cols=35 Identities=11% Similarity=-0.126 Sum_probs=26.1
Q ss_pred HhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC
Q psy12587 282 KFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 282 ~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~ 316 (390)
..+|+++-.|..+...-.+..|+..|+|+|+...+
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 46899888775555455678899999999985544
No 420
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=26.19 E-value=1.6e+02 Score=24.36 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=33.3
Q ss_pred hcceEEeCCCCCCCC--ccHHhhhhcCCCEEEecC-------CCcccceecCcceeeecCCHHHHHH
Q psy12587 283 FCHCIIYTPSNEHFG--IVPIEAMFCKRPVIAVNS-------GGPKESVVDGRTGFLCESNEEAFAK 340 (390)
Q Consensus 283 ~adv~v~ps~~e~~~--~~~~Ea~a~G~pvi~~~~-------~~~~e~i~~~~~g~~~~~~~~~l~~ 340 (390)
.|+.+++....+..| .++-.|+..|+||.+.+. .|...++++|. ..+. +.+++.+
T Consensus 155 ls~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA--~~i~-~~~d~~~ 218 (220)
T TIGR00732 155 LSRAVLVVEAPLKSGALITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGA--ALIT-SAKDILE 218 (220)
T ss_pred hcCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCC--EEEC-CHHHHHH
Confidence 456555544333333 356788999999999653 34556776652 3444 6666654
No 421
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=26.02 E-value=3.1e+02 Score=22.02 Aligned_cols=81 Identities=12% Similarity=-0.001 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHH-hcceEEe-CCCCCC-C----CccHHhhhh--cCCCEEEecC---CCc
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFK-FCHCIIY-TPSNEH-F----GIVPIEAMF--CKRPVIAVNS---GGP 318 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~-~adv~v~-ps~~e~-~----~~~~~Ea~a--~G~pvi~~~~---~~~ 318 (390)
.++.+.+++.|+.--+...+.-+..+....+. .+|.+.+ |....+ + +...+..+. ..+|+++... ...
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i 172 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITPDTL 172 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcCHHHH
Confidence 56677777777644333467777777766666 7887655 543211 1 122233333 5788877642 233
Q ss_pred ccceecCcceeee
Q psy12587 319 KESVVDGRTGFLC 331 (390)
Q Consensus 319 ~e~i~~~~~g~~~ 331 (390)
.++++.|..++.+
T Consensus 173 ~~~~~~Gad~vvv 185 (202)
T cd04726 173 PEFKKAGADIVIV 185 (202)
T ss_pred HHHHhcCCCEEEE
Confidence 4445455555554
No 422
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.89 E-value=3.8e+02 Score=22.11 Aligned_cols=35 Identities=3% Similarity=-0.219 Sum_probs=16.5
Q ss_pred HHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 276 AKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 276 e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
++.+.-.+.++.++|.... +.-+.+|+.+|..+|-
T Consensus 99 ~vi~~a~~~~i~~iPG~~T--ptEi~~a~~~Ga~~vK 133 (212)
T PRK05718 99 PLLKAAQEGPIPLIPGVST--PSELMLGMELGLRTFK 133 (212)
T ss_pred HHHHHHHHcCCCEeCCCCC--HHHHHHHHHCCCCEEE
Confidence 4455555555555544211 1124555556655554
No 423
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=25.70 E-value=4.4e+02 Score=22.79 Aligned_cols=34 Identities=18% Similarity=-0.045 Sum_probs=19.9
Q ss_pred hcceEEe-CCCCCCCCccHHhhhhcCCCEEEecCC
Q psy12587 283 FCHCIIY-TPSNEHFGIVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 283 ~adv~v~-ps~~e~~~~~~~Ea~a~G~pvi~~~~~ 316 (390)
.+|.+++ |...+...-.+-++...|+|||+.+..
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 57 GVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNRE 91 (303)
T ss_pred CCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCCC
Confidence 4665444 433222233455667889999998753
No 424
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=25.66 E-value=2e+02 Score=24.14 Aligned_cols=37 Identities=14% Similarity=-0.061 Sum_probs=19.9
Q ss_pred HHHHhcceEEeCCCC-----CCCCccHHhhhhcCCCEEEecC
Q psy12587 279 SLFKFCHCIIYTPSN-----EHFGIVPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 279 ~~~~~adv~v~ps~~-----e~~~~~~~Ea~a~G~pvi~~~~ 315 (390)
+.+...|.+++|.-. ++.-..+-+++..|+|+++.-.
T Consensus 51 ~~l~~~dgivl~GG~~~~~~~~~~~~i~~~~~~~~PvlGICl 92 (235)
T cd01746 51 EALKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICL 92 (235)
T ss_pred hhhccCCEEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEh
Confidence 456666766664311 1111234556667888887554
No 425
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.65 E-value=1.7e+02 Score=25.58 Aligned_cols=55 Identities=22% Similarity=0.445 Sum_probs=35.2
Q ss_pred HhcceEEeCCCCCCCCccHHhhh----hcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCC
Q psy12587 282 KFCHCIIYTPSNEHFGIVPIEAM----FCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDND 349 (390)
Q Consensus 282 ~~adv~v~ps~~e~~~~~~~Ea~----a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~ 349 (390)
..+|+++.-. .+ .+++++. ..++||+.-+.| ..|++...+++++.+++.++++..
T Consensus 61 ~~~d~vi~~G-GD---Gt~l~~~~~~~~~~~Pvlgin~G---------~lGFl~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 61 EVCDLVIVVG-GD---GSLLGAARALARHNVPVLGINRG---------RLGFLTDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred cCCCEEEEEe-Cc---HHHHHHHHHhcCCCCCEEEEeCC---------cccccccCCHHHHHHHHHHHHcCC
Confidence 3577766422 11 2333332 357899987753 456665558899999999998754
No 426
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=25.50 E-value=4e+02 Score=22.19 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=7.4
Q ss_pred HhhhhcCCCEEEec
Q psy12587 301 IEAMFCKRPVIAVN 314 (390)
Q Consensus 301 ~Ea~a~G~pvi~~~ 314 (390)
.++...|.|+|+.+
T Consensus 73 ~~~~~~~ipvv~~~ 86 (264)
T cd01574 73 LAAAPADVPVVFVD 86 (264)
T ss_pred HHHHhcCCCEEEEe
Confidence 34445556666654
No 427
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.40 E-value=5.6e+02 Score=23.90 Aligned_cols=170 Identities=11% Similarity=0.107 Sum_probs=83.6
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCc---cchhhhcCCCCCCCCeEEEEee--cc--cc
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTP---EPIENVLNPLPGKEDIVFLSIN--RY--ER 205 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~~~g--~~--~~ 205 (390)
+...|.|+-..+...+.+.+.....+++-+.|+..++. +..-..-. ..+++... ++. .+.++.+. .+ +.
T Consensus 60 l~E~d~V~Gg~~~L~~ai~~~~~~~~p~~I~v~ttC~~-~iiGdDi~~v~~~~~~~~~-~~~--~~~vi~v~tpgf~gs~ 135 (435)
T cd01974 60 MTEDAAVFGGQNNLIDGLKNAYAVYKPDMIAVSTTCMA-EVIGDDLNAFIKNAKNKGS-IPA--DFPVPFANTPSFVGSH 135 (435)
T ss_pred CCCCceEECcHHHHHHHHHHHHHhcCCCEEEEeCCchH-hhhhccHHHHHHHHHHhcc-CCC--CCeEEEecCCCCccCH
Confidence 45567777777777777777655443444555554432 21111101 11111110 011 12223332 12 23
Q ss_pred cCCHHHHHHHHHH-HHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEE-----------------
Q psy12587 206 KKNLELAIYSLNS-LRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVL----------------- 267 (390)
Q Consensus 206 ~K~~~~ll~a~~~-l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~----------------- 267 (390)
..|.+..++++-. +..... ....+-.+.|+|..... . +...+++++.+++|+..++.
T Consensus 136 ~~G~~~a~~al~~~l~~~~~-~~~~~~~VNli~~~~~~--~--d~~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~ 210 (435)
T cd01974 136 ITGYDNMVKGILTHLTEGSG-GAGKNGKLNIIPGFDTY--A--GNMREIKRLLELMGVDYTILPDTSDVLDTPADGEYRM 210 (435)
T ss_pred HHHHHHHHHHHHHHHhcccC-CCCCCCeEEEECCCCCC--c--chHHHHHHHHHHcCCCEEEecccccccCCCCCCCccc
Confidence 4677887777753 322110 00012356667643321 1 12389999999999965431
Q ss_pred EecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhh--cCCCEEEec
Q psy12587 268 FLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMF--CKRPVIAVN 314 (390)
Q Consensus 268 ~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a--~G~pvi~~~ 314 (390)
+.|..+-+++ .-+..|.+.+..+.. .+..+.++|. +|+|.+..+
T Consensus 211 ~~gg~~~~~i-~~~~~A~~niv~~~~--~~~~~a~~Le~~~giP~~~~~ 256 (435)
T cd01974 211 YPGGTTLEEL-KDAGNAKATLALQEY--ATEKTAKFLEKKCKVPVETLN 256 (435)
T ss_pred cCCCCCHHHH-HhhccCcEEEEECcc--ccHHHHHHHHHHhCCCeeecC
Confidence 2234455554 335556655543322 2445666654 799988764
No 428
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=25.33 E-value=43 Score=27.11 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=19.1
Q ss_pred CCcchhhh--Hhh-HhhhhcCCceeec
Q psy12587 2 LGATARLT--ITA-TAWGATGPRTTAH 25 (390)
Q Consensus 2 ~GG~~~~~--~~l-~~L~~~G~~V~~~ 25 (390)
.||...+- .++ +.|.+.|++|.++
T Consensus 13 TGsiaa~k~a~~lir~L~k~G~~V~vv 39 (196)
T PRK08305 13 TGSHCTYDEVMPEIEKLVDEGAEVTPI 39 (196)
T ss_pred cCHHHHHHHHHHHHHHHHhCcCEEEEE
Confidence 56666654 788 9999999999877
No 429
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=25.28 E-value=5.9e+02 Score=24.14 Aligned_cols=169 Identities=10% Similarity=0.017 Sum_probs=91.2
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccc--ccCCHH
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYE--RKKNLE 210 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~--~~K~~~ 210 (390)
+.-.|.|+-..+...+.+.+.....+++-+.|+..++. ...-..-....++.-. ..+-+++.+....+. ...|.+
T Consensus 94 l~E~dvVfGg~~kL~~~I~ei~~~~~P~~I~V~tTC~~-~lIGdDi~~v~~~~~~--~~~~pvi~v~t~Gf~g~~~~G~~ 170 (475)
T PRK14478 94 LSETDVVFGGEKKLFKAIDEIIEKYAPPAVFVYQTCVV-ALIGDDIDAVCKRAAE--KFGIPVIPVNSPGFVGNKNLGNK 170 (475)
T ss_pred CCcCceeeCCHHHHHHHHHHHHHhcCCCEEEEeCCChH-HHhccCHHHHHHHHHH--hhCCCEEEEECCCcccchhhhHH
Confidence 56678888877888887777665543444555555432 2111111111111000 011233333333332 446778
Q ss_pred HHHHHHHH-HHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEe
Q psy12587 211 LAIYSLNS-LRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIY 289 (390)
Q Consensus 211 ~ll~a~~~-l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ 289 (390)
...+++-. +....+.....+-.+.|+|...... + ..+++++.+++|+.-+..+.+..+-+++.. +..|.+-|.
T Consensus 171 ~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~g----d-~~elk~lL~~~Gl~v~~~~~~~~s~eei~~-~~~A~lniv 244 (475)
T PRK14478 171 LAGEALLDHVIGTVEPEDTTPYDINILGEYNLAG----E-LWQVKPLLDRLGIRVVACITGDARYDDVAS-AHRARANMM 244 (475)
T ss_pred HHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCC----C-HHHHHHHHHHcCCeEEEEcCCCCCHHHHHh-cccCcEEEE
Confidence 77766654 3321110001124688888543321 1 168999999999977767877777788654 777776554
Q ss_pred CCCCCCCCccHHhhhh--cCCCEEE
Q psy12587 290 TPSNEHFGIVPIEAMF--CKRPVIA 312 (390)
Q Consensus 290 ps~~e~~~~~~~Ea~a--~G~pvi~ 312 (390)
... ..+..+.|+|. +|+|.+.
T Consensus 245 ~~~--~~~~~~A~~L~erfGiP~~~ 267 (475)
T PRK14478 245 VCS--GAMINLARKMEERYGIPFFE 267 (475)
T ss_pred EcH--HHHHHHHHHHHHHhCCCEEe
Confidence 321 12344566664 6999874
No 430
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=24.98 E-value=4.1e+02 Score=22.16 Aligned_cols=61 Identities=7% Similarity=0.010 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcc-hhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIE-NVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~-~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
.++-+...++..++++-+ ++.++.+.+|.+-.+. ...|.+++++.+++.+.-.-..+.|+.
T Consensus 44 h~~Hl~al~~~a~~~gv~----~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~g~IAsv~GRy 105 (223)
T PF06415_consen 44 HIDHLFALIKLAKKQGVK----KVYVHAFTDGRDTPPKSALKYLEELEEKLAEIGIGRIASVSGRY 105 (223)
T ss_dssp -HHHHHHHHHHHHHTT-S----EEEEEEEE-SSSS-TTTHHHHHHHHHHHHHHHTCTEEEEEEECC
T ss_pred cHHHHHHHHHHHHHcCCC----EEEEEEecCCCCCCcchHHHHHHHHHHHHHhhCCceEEEEecee
Confidence 355555556666665532 4889999988665544 478999999999998764445667763
No 431
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=24.66 E-value=2.6e+02 Score=25.56 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC--------CChHHHHHHHHhcceEE--eCCCCC----CC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS--------PSDAAKISLFKFCHCII--YTPSNE----HF 296 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~--------~~~~e~~~~~~~adv~v--~ps~~e----~~ 296 (390)
-++-|+|-|.-. ..+.+.++.+|. +|..... .....+.+++++||+++ +|...+ +.
T Consensus 117 ktvGIIG~G~IG--------~~vA~~l~a~G~--~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~ 186 (378)
T PRK15438 117 RTVGIVGVGNVG--------RRLQARLEALGI--KTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTL 186 (378)
T ss_pred CEEEEECcCHHH--------HHHHHHHHHCCC--EEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence 567777777554 666677776664 2332221 11224567888899877 453332 32
Q ss_pred C---ccHHhhhhcCCCEEEecCC
Q psy12587 297 G---IVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 297 ~---~~~~Ea~a~G~pvi~~~~~ 316 (390)
+ -..+++|.-|.-+|-+..|
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG 209 (378)
T PRK15438 187 HLADEKLIRSLKPGAILINACRG 209 (378)
T ss_pred cccCHHHHhcCCCCcEEEECCCc
Confidence 2 2355556555555554443
No 432
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=24.38 E-value=4.5e+02 Score=22.42 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc-
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC- 284 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a- 284 (390)
.+.+.++++..++.+.. +.+.+...+. ...++..++-+.+.+.|. +.+.+ .|...+.++.++++..
T Consensus 111 ~~~~~~~i~~ak~~G~~-----v~~~~~~~~~----~~~~~~~~~~~~~~~~G~-d~i~l~DT~G~~~P~~v~~lv~~l~ 180 (263)
T cd07943 111 ADVSEQHIGAARKLGMD-----VVGFLMMSHM----ASPEELAEQAKLMESYGA-DCVYVTDSAGAMLPDDVRERVRALR 180 (263)
T ss_pred HHHHHHHHHHHHHCCCe-----EEEEEEeccC----CCHHHHHHHHHHHHHcCC-CEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 45677777777776653 5555532221 123555666666677774 56666 4667777776666542
Q ss_pred ---c---eEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHH
Q psy12587 285 ---H---CIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKI 345 (390)
Q Consensus 285 ---d---v~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l 345 (390)
+ +.++. ...+|+. .++|+.+|.-.|-+...|+.+- .|- .+.|+++..+...
T Consensus 181 ~~~~~~~l~~H~--Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~~-----aGN---~~~E~lv~~L~~~ 240 (263)
T cd07943 181 EALDPTPVGFHG--HNNLGLAVANSLAAVEAGATRIDGSLAGLGAG-----AGN---TPLEVLVAVLERM 240 (263)
T ss_pred HhCCCceEEEEe--cCCcchHHHHHHHHHHhCCCEEEeecccccCC-----cCC---ccHHHHHHHHHhc
Confidence 2 22322 3445553 5889999999999998888773 221 1677777777543
No 433
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=24.33 E-value=2.1e+02 Score=23.89 Aligned_cols=48 Identities=6% Similarity=-0.020 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCc
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGI 298 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~ 298 (390)
..+-+.++++|....+-+-+..+-+.+..++...|.+++-|..-||+.
T Consensus 98 ~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~G 145 (229)
T PRK09722 98 FRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAG 145 (229)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcc
Confidence 567788889998888888888888999999999998887776666653
No 434
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=24.33 E-value=3.8e+02 Score=21.58 Aligned_cols=54 Identities=7% Similarity=0.074 Sum_probs=32.4
Q ss_pred eEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcC
Q psy12587 195 IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLK 261 (390)
Q Consensus 195 ~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~ 261 (390)
.+++++|..... ....+.++++++++. ++++.++|-|.... + .+.++.+.+..+
T Consensus 109 rivi~v~S~~~~-d~~~i~~~~~~lkk~-------~I~v~vI~~G~~~~--~---~~~l~~~~~~~~ 162 (187)
T cd01452 109 RIVAFVGSPIEE-DEKDLVKLAKRLKKN-------NVSVDIINFGEIDD--N---TEKLTAFIDAVN 162 (187)
T ss_pred eEEEEEecCCcC-CHHHHHHHHHHHHHc-------CCeEEEEEeCCCCC--C---HHHHHHHHHHhc
Confidence 456777776432 334466888888776 46677766664431 1 156666666653
No 435
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=24.29 E-value=4.5e+02 Score=22.42 Aligned_cols=86 Identities=10% Similarity=0.091 Sum_probs=56.9
Q ss_pred EEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC--CCh
Q psy12587 197 FLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS--PSD 274 (390)
Q Consensus 197 i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~--~~~ 274 (390)
|+|+|-+--.-|...+.+.+++++++++ ..|+|+......... ...+..-+....+|. +-+.. |. .+.
T Consensus 2 ilfigdi~g~~G~~~~~~~l~~lk~~~~------~D~vi~NgEn~~gg~--gl~~~~~~~L~~~G~-D~iTl-GNH~fD~ 71 (255)
T cd07382 2 ILFIGDIVGKPGRKAVKEHLPKLKKEYK------IDFVIANGENAAGGK--GITPKIAKELLSAGV-DVITM-GNHTWDK 71 (255)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHCC------CCEEEECCccccCCC--CCCHHHHHHHHhcCC-CEEEe-cccccCc
Confidence 6889999888899999999999998865 446665332211100 112666677777776 44443 65 345
Q ss_pred HHHHHHHHhcceEEeCCC
Q psy12587 275 AAKISLFKFCHCIIYTPS 292 (390)
Q Consensus 275 ~e~~~~~~~adv~v~ps~ 292 (390)
.++..++...+-.+.|..
T Consensus 72 gel~~~l~~~~~~l~~aN 89 (255)
T cd07382 72 KEILDFIDEEPRLLRPAN 89 (255)
T ss_pred chHHHHHhcCcCceEeee
Confidence 577888888876666654
No 436
>KOG2848|consensus
Probab=24.23 E-value=3.9e+02 Score=22.78 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=31.6
Q ss_pred EEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCC
Q psy12587 197 FLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYD 240 (390)
Q Consensus 197 i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~ 240 (390)
++|+-|.+.++-++.+-+++++++++ +.++.+.-.|.
T Consensus 137 vvfIdR~r~~~Ai~~l~~~~~~mkk~-------~~kvWvFPEGT 173 (276)
T KOG2848|consen 137 VVFIDRSRREKAIDTLDKCAERMKKE-------NRKVWVFPEGT 173 (276)
T ss_pred ceEEecCCHHHHHHHHHHHHHHHHhC-------CeeEEEccCCc
Confidence 47888999999999999999999886 58899988775
No 437
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=24.16 E-value=5.2e+02 Score=23.14 Aligned_cols=106 Identities=9% Similarity=0.038 Sum_probs=59.1
Q ss_pred EEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCc------chhHHHHHHHHHHHHcCCCCcEEEecC
Q psy12587 198 LSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNI------ENVEYYKELGVLVKKLKLSDNVLFLTS 271 (390)
Q Consensus 198 ~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~------~~~~y~~~~~~~~~~~~l~~~v~~~g~ 271 (390)
+.+| -..-..-+.+++.++.+++.+- ++...|...+++. .+.+-.+.+.+.+++.|++= +.-.
T Consensus 96 ~IAG-PCsiEs~e~~~~~A~~lk~~ga-------~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v---~tev 164 (335)
T PRK08673 96 VIAG-PCSVESEEQILEIARAVKEAGA-------QILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPI---VTEV 164 (335)
T ss_pred EEEe-cCccCCHHHHHHHHHHHHHhch-------hhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcE---EEee
Confidence 3444 2333466788888888877543 2322221111111 01233367788888888742 2333
Q ss_pred CChHHHHHHHHhcceEEeCCCCCCCCccHHh-hhhcCCCEEEecC
Q psy12587 272 PSDAAKISLFKFCHCIIYTPSNEHFGIVPIE-AMFCKRPVIAVNS 315 (390)
Q Consensus 272 ~~~~e~~~~~~~adv~v~ps~~e~~~~~~~E-a~a~G~pvi~~~~ 315 (390)
.+..++..+...+|++-.++.. .....+++ +...|+||+.+..
T Consensus 165 ~d~~~~~~l~~~vd~lqIgAr~-~~N~~LL~~va~~~kPViLk~G 208 (335)
T PRK08673 165 MDPRDVELVAEYVDILQIGARN-MQNFDLLKEVGKTNKPVLLKRG 208 (335)
T ss_pred CCHHHHHHHHHhCCeEEECccc-ccCHHHHHHHHcCCCcEEEeCC
Confidence 4444544455668988888753 22334444 5558999999774
No 438
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=24.05 E-value=2.3e+02 Score=25.48 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
....++.+...+.|.+-.....+.++.+++ .-+...|+++..+-.. +++=+.-.+++|++++.
T Consensus 254 ~~~~~l~k~~~~~g~~~~li~~~~i~p~~L-~~f~~iD~~v~taCPR---i~iDd~~~f~kPlLTP~ 316 (347)
T COG1736 254 EVARELVKLLKEAGKEVYLIVVDEISPDKL-ANFDDIDAFVNTACPR---IPIDDGDRFKKPLLTPY 316 (347)
T ss_pred HHHHHHHHHHHHcCCceEEEEecCCCHHHH-hcccceeEEEEecCCC---cccchHhhhCCcccChH
Confidence 344778888888887666667888888875 4455788888765321 45667778888888865
No 439
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=24.02 E-value=43 Score=26.78 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=17.5
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH 25 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~ 25 (390)
+|-..+.=..+ ++..++||+||.+
T Consensus 6 IgAsG~~Gs~i~~EA~~RGHeVTAi 30 (211)
T COG2910 6 IGASGKAGSRILKEALKRGHEVTAI 30 (211)
T ss_pred EecCchhHHHHHHHHHhCCCeeEEE
Confidence 44555556677 8888899998877
No 440
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=23.95 E-value=1.8e+02 Score=23.69 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=44.0
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCC---------CCCCc--c
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN---------EHFGI--V 299 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~---------e~~~~--~ 299 (390)
+.++=+|.|+. ..+.+..++.|. .+.+ +.+ ++.+..||.+++|... ...++ .
T Consensus 4 i~IIDyg~GNL---------~Sv~~Aler~G~--~~~v----s~d--~~~i~~AD~liLPGVGaf~~am~~L~~~gl~~~ 66 (204)
T COG0118 4 VAIIDYGSGNL---------RSVKKALERLGA--EVVV----SRD--PEEILKADKLILPGVGAFGAAMANLRERGLIEA 66 (204)
T ss_pred EEEEEcCcchH---------HHHHHHHHHcCC--eeEE----ecC--HHHHhhCCEEEecCCCCHHHHHHHHHhcchHHH
Confidence 44555666665 667777777763 2333 333 4679999999999641 11232 5
Q ss_pred HHhhhhcCCCEEEecC
Q psy12587 300 PIEAMFCKRPVIAVNS 315 (390)
Q Consensus 300 ~~Ea~a~G~pvi~~~~ 315 (390)
+.|+..+|+|++.--.
T Consensus 67 i~~~~~~~kP~LGICl 82 (204)
T COG0118 67 IKEAVESGKPFLGICL 82 (204)
T ss_pred HHHHHhcCCCEEEEeH
Confidence 6788889999988443
No 441
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=23.91 E-value=69 Score=20.70 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=40.6
Q ss_pred ccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcC
Q psy12587 228 KTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCK 307 (390)
Q Consensus 228 ~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G 307 (390)
++++.+.+ +..+.. -.++++++++.+|- .+ .. ..-...+.+|.... ........+|.+.|
T Consensus 6 F~g~~f~i-~~~~~~------~~~~l~~~i~~~GG--~v--~~--------~~~~~~thvI~~~~-~~~~~k~~~~~~~~ 65 (78)
T PF00533_consen 6 FEGCTFCI-SGFDSD------EREELEQLIKKHGG--TV--SN--------SFSKKTTHVIVGNP-NKRTKKYKAAIANG 65 (78)
T ss_dssp TTTEEEEE-SSTSSS------HHHHHHHHHHHTTE--EE--ES--------SSSTTSSEEEESSS-HCCCHHHHHHHHTT
T ss_pred CCCEEEEE-ccCCCC------CHHHHHHHHHHcCC--EE--Ee--------ecccCcEEEEeCCC-CCccHHHHHHHHCC
Confidence 34688888 333332 12788999998873 22 11 22344556665433 22345688899999
Q ss_pred CCEEEec
Q psy12587 308 RPVIAVN 314 (390)
Q Consensus 308 ~pvi~~~ 314 (390)
+|+|..+
T Consensus 66 i~iV~~~ 72 (78)
T PF00533_consen 66 IPIVSPD 72 (78)
T ss_dssp SEEEETH
T ss_pred CeEecHH
Confidence 9999764
No 442
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=23.86 E-value=5.9e+02 Score=23.62 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEecCC--------C--hHHHHH-
Q psy12587 212 AIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLTSP--------S--DAAKIS- 279 (390)
Q Consensus 212 ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g~~--------~--~~e~~~- 279 (390)
++.+++...++..+ .++++.|.|... -.+-+++...+.. ++|.....- + ..+...
T Consensus 186 llnalk~~gk~l~d-----~kiv~~GAGAAg--------iaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~ 252 (432)
T COG0281 186 LLNALKLTGKKLKD-----QKIVINGAGAAG--------IAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYA 252 (432)
T ss_pred HHHHHHHhCCCccc-----eEEEEeCCcHHH--------HHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHH
Confidence 45556555555554 889999988654 4556666666653 344433211 1 111111
Q ss_pred -------------HHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 280 -------------LFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 280 -------------~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
.+..+|+++-.|....|.--+++.|+-. |+|-
T Consensus 253 ~a~~~~~~~~~~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~-PiIf 297 (432)
T COG0281 253 KAIEDTGERTLDLALAGADVLIGVSGVGAFTEEMVKEMAKH-PIIF 297 (432)
T ss_pred HHHhhhccccccccccCCCEEEEcCCCCCcCHHHHHHhccC-CEEe
Confidence 3456888888776644444567777666 5554
No 443
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=23.86 E-value=63 Score=22.82 Aligned_cols=44 Identities=7% Similarity=-0.074 Sum_probs=26.9
Q ss_pred HHHHhcceEEeCCCCCCCCccH-HhhhhcCCCEEEecCCCcccce
Q psy12587 279 SLFKFCHCIIYTPSNEHFGIVP-IEAMFCKRPVIAVNSGGPKESV 322 (390)
Q Consensus 279 ~~~~~adv~v~ps~~e~~~~~~-~Ea~a~G~pvi~~~~~~~~e~i 322 (390)
..+..+++++..+..+...-.+ -+|-+.|+||-+.|.+...+++
T Consensus 56 ~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~~~dF~ 100 (103)
T PF13241_consen 56 EDLDGADLVFAATDDPELNEAIYADARARGILVNVVDDPELCDFI 100 (103)
T ss_dssp GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CCCCSEE
T ss_pred HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcCCCeEE
Confidence 3477788777655443333333 4555689999999887766654
No 444
>PLN02928 oxidoreductase family protein
Probab=23.85 E-value=2.1e+02 Score=25.68 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=26.2
Q ss_pred HHHHHHHHhcceEEe--CCCCCCC---CccHHhhhhcCCCEEEecCCC
Q psy12587 275 AAKISLFKFCHCIIY--TPSNEHF---GIVPIEAMFCKRPVIAVNSGG 317 (390)
Q Consensus 275 ~e~~~~~~~adv~v~--ps~~e~~---~~~~~Ea~a~G~pvi~~~~~~ 317 (390)
.++.++++.||++++ |...++- +-..+..|--|.-+|-+..|+
T Consensus 218 ~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~ 265 (347)
T PLN02928 218 EDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGG 265 (347)
T ss_pred cCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCcc
Confidence 356789999998776 3333333 334666776666565554443
No 445
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.79 E-value=2.2e+02 Score=22.53 Aligned_cols=103 Identities=18% Similarity=0.081 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEE
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCII 288 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v 288 (390)
...+++++.+.+...+ ++-++|..+.. ..+....+-+++ .+....+-+.+|+...+.+
T Consensus 63 ~~Dil~al~~a~~~~~-------~Iavv~~~~~~--------~~~~~~~~ll~~--~i~~~~~~~~~e~~~~i~~----- 120 (176)
T PF06506_consen 63 GFDILRALAKAKKYGP-------KIAVVGYPNII--------PGLESIEELLGV--DIKIYPYDSEEEIEAAIKQ----- 120 (176)
T ss_dssp HHHHHHHHHHCCCCTS-------EEEEEEESS-S--------CCHHHHHHHHT---EEEEEEESSHHHHHHHHHH-----
T ss_pred HhHHHHHHHHHHhcCC-------cEEEEeccccc--------HHHHHHHHHhCC--ceEEEEECCHHHHHHHHHH-----
Confidence 4567888888876543 45555544332 223444444443 4666666666666555544
Q ss_pred eCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhc
Q psy12587 289 YTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD 347 (390)
Q Consensus 289 ~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~ 347 (390)
+..-|+-+|..+.....-.-+.|-.++++..+.+++..++.+++.
T Consensus 121 --------------~~~~G~~viVGg~~~~~~A~~~gl~~v~i~sg~esi~~Al~eA~~ 165 (176)
T PF06506_consen 121 --------------AKAEGVDVIVGGGVVCRLARKLGLPGVLIESGEESIRRALEEALR 165 (176)
T ss_dssp --------------HHHTT--EEEESHHHHHHHHHTTSEEEESS--HHHHHHHHHHHHH
T ss_pred --------------HHHcCCcEEECCHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHH
Confidence 333344444333211111112233444555467888888877654
No 446
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=23.78 E-value=2e+02 Score=20.19 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceE
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCI 287 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~ 287 (390)
++++..++..+. +-|.|...++..+...+-+...+-
T Consensus 47 eei~~~~~~~~~-d~vvfd~~Lsp~Q~rNLe~~~~~~ 82 (95)
T PF13167_consen 47 EEIKELIEELDA-DLVVFDNELSPSQQRNLEKALGVK 82 (95)
T ss_pred HHHHHHHhhcCC-CEEEECCCCCHHHHHHHHHHHCCe
Confidence 677777777764 567777777777666555544443
No 447
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=23.71 E-value=3.9e+02 Score=21.52 Aligned_cols=62 Identities=11% Similarity=-0.099 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCCcEEEecC--CChHHHHHHHHhcceEEeCCCCCCC--CccHHhhhhcCCCEEEe
Q psy12587 251 KELGVLVKKLKLSDNVLFLTS--PSDAAKISLFKFCHCIIYTPSNEHF--GIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~--~~~~e~~~~~~~adv~v~ps~~e~~--~~~~~Ea~a~G~pvi~~ 313 (390)
+++.+..++++. +-+...|+ +=..++.+.+..--+-++||..-.+ ...+..|+..|....+.
T Consensus 69 ~~~~~~l~~~~~-D~iv~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~tGv 134 (190)
T TIGR00639 69 QAIIEELRAHEV-DLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGC 134 (190)
T ss_pred HHHHHHHHhcCC-CEEEEeCcchhCCHHHHhhccCCEEEEeCCcccCCCCccHHHHHHHcCCCeEEE
Confidence 455555555553 44444444 2223333444444456677653222 23566788888776553
No 448
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=23.64 E-value=6.6e+02 Score=24.15 Aligned_cols=194 Identities=8% Similarity=0.075 Sum_probs=94.0
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCc---cchhhhcCCCCCCCCeEEEEeecc--cccC
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTP---EPIENVLNPLPGKEDIVFLSINRY--ERKK 207 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~~~g~~--~~~K 207 (390)
+...+.|+-..+.+.+.+.+.+...+++-+.|+..++ .+..-..-. ...++... .|.+-+++.+....+ +...
T Consensus 117 m~E~~aVfGG~~~L~e~I~~~~~~y~P~~I~V~tTC~-~evIGDDi~a~i~~~~~~~~-~p~~~pVi~v~TpgF~Gs~~~ 194 (515)
T TIGR01286 117 MTEDAAVFGGLKNMVDGLQNCYALYKPKMIAVSTTCM-AEVIGDDLNAFIGNAKKEGF-IPDDFPVPFAHTPSFVGSHIT 194 (515)
T ss_pred CCCCceeeCcHHHHHHHHHHHHHhcCCCEEEEeCCcH-HHHhhccHHHHHHHHHHhcC-CCCCCceEEeeCCCCcccHHH
Confidence 4455666666677777777766544344444444432 221111100 01111110 122122332221111 3446
Q ss_pred CHHHHHHHHHHHHhhccc---ccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcE-----------------E
Q psy12587 208 NLELAIYSLNSLRSRLSD---EMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNV-----------------L 267 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~---~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v-----------------~ 267 (390)
|.+..++++-+....... ....+-++.|+|+.... . .-..+++++.+.+|++-++ .
T Consensus 195 Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~-~---gd~~eikrlL~~~Gi~~~~l~d~s~~~d~p~~g~~~~ 270 (515)
T TIGR01286 195 GYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETY-I---GNFREIKRILSLMGVGYTLLSDPEEVLDTPADGEFRM 270 (515)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCC-c---hhHHHHHHHHHHcCCCeEEccCccccccCCCCCCccc
Confidence 788887777643221100 00013457777643211 0 1128899999999986554 2
Q ss_pred EecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhh--cCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHH
Q psy12587 268 FLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMF--CKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKI 345 (390)
Q Consensus 268 ~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a--~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l 345 (390)
+.|..+-+++.+ ..+|.+.+.-..+ .+....|++. +|.|.+....+ .| +. ..+++...|.++
T Consensus 271 ~~ggttleei~~-a~~A~~~ivl~~~--~~~~~a~~l~~~~g~p~~~~~~P----------iG--i~-~Td~fL~~la~~ 334 (515)
T TIGR01286 271 YAGGTTLEEMKD-APNAEATVLLQPY--TLRKTKEYIEKTWKQETPKLNIP----------LG--VK-GTDEFLMKVSEI 334 (515)
T ss_pred cCCCCCHHHHHH-hhhCcEEEEEchh--hhHHHHHHHHHHhCCCcccCCCC----------cc--HH-HHHHHHHHHHHH
Confidence 334556666544 4444444332211 2345566665 79998665422 11 22 567777777777
Q ss_pred hcC
Q psy12587 346 VDN 348 (390)
Q Consensus 346 ~~~ 348 (390)
...
T Consensus 335 ~g~ 337 (515)
T TIGR01286 335 SGQ 337 (515)
T ss_pred HCC
Confidence 654
No 449
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=23.55 E-value=4.4e+02 Score=22.05 Aligned_cols=48 Identities=8% Similarity=-0.115 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCC--CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCc
Q psy12587 251 KELGVLVKKLKL--SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGI 298 (390)
Q Consensus 251 ~~~~~~~~~~~l--~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~ 298 (390)
.+.-+.+++.|. ...+.+-+..+-+.+..++...|.+++-|..-|||.
T Consensus 106 ~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgG 155 (228)
T PRK08091 106 ALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGT 155 (228)
T ss_pred HHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCC
Confidence 567778888887 777888888888999999999998877666556654
No 450
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=23.51 E-value=2.3e+02 Score=19.76 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE
Q psy12587 207 KNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF 268 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~ 268 (390)
-|+..+++..+.++++ +..+.++|-. +.+.+..+..|+.+-+.+
T Consensus 59 sgl~~L~~~~~~~~~~-------~~~~~l~~~~-----------~~~~~~l~~~~l~~~~~i 102 (108)
T TIGR00377 59 SGLGVLLGRYKQVRRV-------GGQLVLVSVS-----------PRVARLLDITGLLRIIPI 102 (108)
T ss_pred ccHHHHHHHHHHHHhc-------CCEEEEEeCC-----------HHHHHHHHHhChhheecc
Confidence 4777888888777664 3678888854 667777777776554443
No 451
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=23.50 E-value=4.2e+02 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=18.1
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH 25 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~ 25 (390)
+||=.|.+ .+ +.|.+.|++|.++
T Consensus 8 ~ggd~r~~-~~~~~l~~~G~~v~~~ 31 (296)
T PRK08306 8 IGGDARQL-ELIRKLVELGAKVSLV 31 (296)
T ss_pred EcCcHHHH-HHHHHHHHCCCEEEEE
Confidence 56666665 56 9999999999886
No 452
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=23.30 E-value=3.8e+02 Score=24.52 Aligned_cols=16 Identities=19% Similarity=0.490 Sum_probs=11.1
Q ss_pred cHHhhhhcCCCEEEec
Q psy12587 299 VPIEAMFCKRPVIAVN 314 (390)
Q Consensus 299 ~~~Ea~a~G~pvi~~~ 314 (390)
+++.++.+|+|.|..+
T Consensus 359 ~~~~yl~ag~p~vvg~ 374 (383)
T PF03568_consen 359 TPLSYLLAGCPLVVGN 374 (383)
T ss_pred cHHHHHhcCChheEee
Confidence 4566888888877654
No 453
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=23.28 E-value=3.1e+02 Score=21.95 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=46.5
Q ss_pred CeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC
Q psy12587 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS 273 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~ 273 (390)
+.+.+.+.+..+ +..+...++.+++++|+ ..+++....+.. .+..++.... ...+.+.+ ++
T Consensus 22 ~~iWiHa~SvGE---~~a~~~Li~~l~~~~p~-----~~illT~~T~tg-------~~~~~~~~~~---~v~~~~~P-~D 82 (186)
T PF04413_consen 22 PLIWIHAASVGE---VNAARPLIKRLRKQRPD-----LRILLTTTTPTG-------REMARKLLPD---RVDVQYLP-LD 82 (186)
T ss_dssp T-EEEE-SSHHH---HHHHHHHHHHHTT---T-----S-EEEEES-CCH-------HHHHHGG-GG---G-SEEE----S
T ss_pred CcEEEEECCHHH---HHHHHHHHHHHHHhCCC-----CeEEEEecCCch-------HHHHHHhCCC---CeEEEEeC-cc
Confidence 566777666553 45566677777777775 888887765432 1223333222 12344433 33
Q ss_pred h-HHHHHHHHhc--ceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 274 D-AAKISLFKFC--HCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 274 ~-~e~~~~~~~a--dv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
. ..+..+++.- |+++. ...|-+|+-+.+|-..|+|++.-+
T Consensus 83 ~~~~~~rfl~~~~P~~~i~-~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 FPWAVRRFLDHWRPDLLIW-VETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp SHHHHHHHHHHH--SEEEE-ES----HHHHHH-----S-EEEEE
T ss_pred CHHHHHHHHHHhCCCEEEE-EccccCHHHHHHHhhcCCCEEEEe
Confidence 2 3345566654 56654 346789999999999999999866
No 454
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=23.17 E-value=45 Score=13.89 Aligned_cols=10 Identities=20% Similarity=0.132 Sum_probs=6.4
Q ss_pred cHHhhhhcCC
Q psy12587 299 VPIEAMFCKR 308 (390)
Q Consensus 299 ~~~Ea~a~G~ 308 (390)
+++||+..|.
T Consensus 5 sllealqtg~ 14 (15)
T PF06345_consen 5 SLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHccC
Confidence 4677776664
No 455
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=23.08 E-value=2.2e+02 Score=24.39 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=27.0
Q ss_pred ccHHhhhhcCCCEEE-ecCCCcccceecCcceeeecCCHHHHHHHHHHHhc
Q psy12587 298 IVPIEAMFCKRPVIA-VNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD 347 (390)
Q Consensus 298 ~~~~Ea~a~G~pvi~-~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~ 347 (390)
.++.||..+|.|+|+ .|....++.+. ..+-.++|.-.....+..++.
T Consensus 171 ~ai~Ea~kl~IPiIaivDTn~dp~~Id---ypIP~Ndds~~si~li~~~l~ 218 (258)
T PRK05299 171 IAVKEARKLGIPVVAIVDTNCDPDGVD---YPIPGNDDAIRSIKLYTSKIA 218 (258)
T ss_pred HHHHHHHHhCCCEEEEeeCCCCCcccc---eeeecCCchHHHHHHHHHHHH
Confidence 679999999999999 44444444441 112222244444445555444
No 456
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=23.02 E-value=5.4e+02 Score=22.84 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=83.8
Q ss_pred HhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCC-CCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHH
Q psy12587 132 TTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVY-TEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLE 210 (390)
Q Consensus 132 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~ 210 (390)
..+.-|.++..+.-.+..+..... .+-++..++. ..-..-.+ .+. ..+.. +.-+. ..-.++
T Consensus 85 ~~~~~dviv~i~tp~Aq~~~s~~~-----~iPVV~aavtd~v~a~Lv~------~~~--~pg~N--vTGvs---D~~~v~ 146 (322)
T COG2984 85 VGDKPDVIVAIATPAAQALVSATK-----TIPVVFAAVTDPVGAKLVK------SLE--QPGGN--VTGVS---DLLPVA 146 (322)
T ss_pred hcCCCcEEEecCCHHHHHHHHhcC-----CCCEEEEccCchhhccCCc------ccc--CCCCc--eeecC---CcchHH
Confidence 345668888888777777777522 2344444432 11111100 000 11111 22222 222345
Q ss_pred HHHHHHHHHHhhcccccccceEE-EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe-cCCCh--HHHHHHHHhcce
Q psy12587 211 LAIYSLNSLRSRLSDEMKTHVKL-VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL-TSPSD--AAKISLFKFCHC 286 (390)
Q Consensus 211 ~ll~a~~~l~~~~~~~~~~~~~l-~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~-g~~~~--~e~~~~~~~adv 286 (390)
.-+++++.+.-.- -++ +++..+... .....++++..++..|+. -+... ....+ .-+..+..+.|+
T Consensus 147 q~i~lik~~~Pna-------k~Igv~Y~p~E~n---s~~l~eelk~~A~~~Gl~-vve~~v~~~ndi~~a~~~l~g~~d~ 215 (322)
T COG2984 147 QQIELIKALLPNA-------KSIGVLYNPGEAN---SVSLVEELKKEARKAGLE-VVEAAVTSVNDIPRAVQALLGKVDV 215 (322)
T ss_pred HHHHHHHHhCCCC-------eeEEEEeCCCCcc---cHHHHHHHHHHHHHCCCE-EEEEecCcccccHHHHHHhcCCCcE
Confidence 5555555543321 123 566665532 335568899999999883 23322 12222 122445577899
Q ss_pred EEeCCCC---CCCCccHHhhhhcCCCEEEecCCCc
Q psy12587 287 IIYTPSN---EHFGIVPIEAMFCKRPVIAVNSGGP 318 (390)
Q Consensus 287 ~v~ps~~---e~~~~~~~Ea~a~G~pvi~~~~~~~ 318 (390)
+..|... -++...+.+|...++|+++++.+..
T Consensus 216 i~~p~dn~i~s~~~~l~~~a~~~kiPli~sd~~~V 250 (322)
T COG2984 216 IYIPTDNLIVSAIESLLQVANKAKIPLIASDTSSV 250 (322)
T ss_pred EEEecchHHHHHHHHHHHHHHHhCCCeecCCHHHH
Confidence 8888542 3444567899999999999986443
No 457
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=22.89 E-value=6.5e+02 Score=23.79 Aligned_cols=192 Identities=8% Similarity=-0.026 Sum_probs=100.0
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecc---cccCCH
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRY---ERKKNL 209 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~---~~~K~~ 209 (390)
+.-.|.|+-..+...+.+.+.+...++.+...|...+-.+..-..-....++.-. ..+-+++.+....+ +...|.
T Consensus 106 l~E~diVfGGe~kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~av~~~~~~--~~~~pVi~v~t~gf~G~s~~~G~ 183 (466)
T TIGR01282 106 FQEKDIVFGGDKKLKKAIDEIEELFPLNKGISIQSECPVGLIGDDIEAVAKKASK--ELGKPVVPVRCEGFRGVSQSLGH 183 (466)
T ss_pred CCccceecCcHHHHHHHHHHHHHhCCcccEEEEeCCChHHHhccCHHHHHHHHhh--hcCCcEEEEeCCCcCCchhhHHH
Confidence 5566777777777777777766555331444444443332222111111111100 11123333333333 222366
Q ss_pred HHHHHHHHHH-Hhhcccc--cccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcce
Q psy12587 210 ELAIYSLNSL-RSRLSDE--MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHC 286 (390)
Q Consensus 210 ~~ll~a~~~l-~~~~~~~--~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv 286 (390)
+...+++.+. ....... ...+-.+.|+|...... + ..+++++.+++|+.-+..+.|..+-+++ .-+..|.+
T Consensus 184 ~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~~g----d-~~eik~lL~~~Gi~v~~~~sg~~t~~~i-~~~~~A~l 257 (466)
T TIGR01282 184 HIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNIGG----D-AWESRILLEEIGLRVVAQWSGDGTLNEM-ENAPKAKL 257 (466)
T ss_pred HHHHHHHHHHhhccccccccCCCCCeEEEEecCCCcc----c-HHHHHHHHHHcCCeEEEEECCCCCHHHH-HhcccCCE
Confidence 6666665542 2211100 00135677888544321 1 1679999999999877778887777775 45777776
Q ss_pred EEeCCCCCCCCccHHhhhh--cCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcC
Q psy12587 287 IIYTPSNEHFGIVPIEAMF--CKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDN 348 (390)
Q Consensus 287 ~v~ps~~e~~~~~~~Ea~a--~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~ 348 (390)
-+..+... +..+.|.|. +|+|.+..+.-| +. +.+++.+.|.+++..
T Consensus 258 niv~~~~~--~~~~A~~Le~~fGiP~~~~~~~G-------------i~-~T~~~Lr~ia~~~g~ 305 (466)
T TIGR01282 258 NLIHCYRS--MNYISRHMEEKYGIPWMEYNFFG-------------PT-KIAESLRKIAEFFDD 305 (466)
T ss_pred EEEEChHH--HHHHHHHHHHHhCCceEeCCCCC-------------HH-HHHHHHHHHHHHHCc
Confidence 66544322 124556664 799988743111 12 556666666666643
No 458
>PLN02327 CTP synthase
Probab=22.67 E-value=6.3e+02 Score=24.50 Aligned_cols=86 Identities=16% Similarity=0.059 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC--CChH----------HHHHHHHhcceEEeCCCC----
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS--PSDA----------AKISLFKFCHCIIYTPSN---- 293 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~--~~~~----------e~~~~~~~adv~v~ps~~---- 293 (390)
.+++-++|.............+.|+.....++..-.+.|... +++. ...+.+..+|.+++|.-.
T Consensus 297 ~v~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~ 376 (557)
T PLN02327 297 PVRIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRG 376 (557)
T ss_pred ceEEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcc
Confidence 389999998755432223333445555556666556666543 2211 133678999999998632
Q ss_pred -CCCCccHHhhhhcCCCEEEecC
Q psy12587 294 -EHFGIVPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 294 -e~~~~~~~Ea~a~G~pvi~~~~ 315 (390)
++.-..+-.|...|+|+++.-.
T Consensus 377 ~~G~i~ai~~are~~iP~LGICl 399 (557)
T PLN02327 377 VEGKILAAKYARENKVPYLGICL 399 (557)
T ss_pred cccHHHHHHHHHHcCCCEEEEcH
Confidence 1111123344557899987543
No 459
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=22.58 E-value=3.1e+02 Score=24.63 Aligned_cols=92 Identities=7% Similarity=-0.020 Sum_probs=51.7
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
+++.++.+|. .- | ...++++..+.+ +++++-+.+... +..++.++++|++ .+-
T Consensus 2 ~~~rVgViG~-~~--G-~~h~~al~~~~~--------~~eLvaV~d~~~---------erA~~~A~~~gi~------~y~ 54 (343)
T TIGR01761 2 DVQSVVVCGT-RF--G-QFYLAAFAAAPE--------RFELAGILAQGS---------ERSRALAHRLGVP------LYC 54 (343)
T ss_pred CCcEEEEEeH-HH--H-HHHHHHHHhCCC--------CcEEEEEEcCCH---------HHHHHHHHHhCCC------ccC
Confidence 3456677775 21 2 345666665432 256654444332 6778888888753 133
Q ss_pred ChHHHHHHHHhcce--EEeCCC-CCCCCc-cHHhhhhcCCCEEEec
Q psy12587 273 SDAAKISLFKFCHC--IIYTPS-NEHFGI-VPIEAMFCKRPVIAVN 314 (390)
Q Consensus 273 ~~~e~~~~~~~adv--~v~ps~-~e~~~~-~~~Ea~a~G~pvi~~~ 314 (390)
+.+ +++...|+ +..|+. ..+... ...+|+..|+.|++=.
T Consensus 55 ~~e---ell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EK 97 (343)
T TIGR01761 55 EVE---ELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEH 97 (343)
T ss_pred CHH---HHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcC
Confidence 444 45565554 444432 122222 4677999999999943
No 460
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=22.55 E-value=2.6e+02 Score=23.76 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=60.2
Q ss_pred EEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC--CChH
Q psy12587 198 LSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS--PSDA 275 (390)
Q Consensus 198 ~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~--~~~~ 275 (390)
+|+|-+--.-|...+.+.+..|++++. +.|+|+...+..... -...+.-+...++|+ + |.=.|. -+..
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~------~DfVIaNgENaa~G~--Git~~~~~~L~~~Gv-D-viT~GNH~wdkk 70 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYG------IDFVIANGENAAGGF--GITPKIAEELFKAGV-D-VITMGNHIWDKK 70 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-------SEEEEE-TTTTTTS--S--HHHHHHHHHHT--S-EEE--TTTTSST
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcC------CCEEEECCcccCCCC--CCCHHHHHHHHhcCC-C-EEecCcccccCc
Confidence 466777666788999999999998864 778887654332111 111444445556676 3 444555 3557
Q ss_pred HHHHHHHhcceEEeCCCC----CCCCccHHhhhhcCCCEEEecC
Q psy12587 276 AKISLFKFCHCIIYTPSN----EHFGIVPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 276 e~~~~~~~adv~v~ps~~----e~~~~~~~Ea~a~G~pvi~~~~ 315 (390)
|+.+++...+-++=|..+ -|.|..++|. -|..+-+.+.
T Consensus 71 ei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~--~g~kv~ViNl 112 (253)
T PF13277_consen 71 EIFDFIDKEPRILRPANYPPGTPGRGYRIFEK--NGKKVAVINL 112 (253)
T ss_dssp THHHHHHH-SSEE--TTS-TT-SSBSEEEEEE--TTEEEEEEEE
T ss_pred HHHHHHhcCCCcEECCCCCCCCCcCcEEEEEE--CCEEEEEEEC
Confidence 889999998888888663 3556667766 5555555443
No 461
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=22.19 E-value=2.7e+02 Score=23.08 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=33.2
Q ss_pred CCcEEEecC-CChH---HHHHHHHhcceEEeC-CCCCCCCcc--HHhhhhcCCCEEEecCCC
Q psy12587 263 SDNVLFLTS-PSDA---AKISLFKFCHCIIYT-PSNEHFGIV--PIEAMFCKRPVIAVNSGG 317 (390)
Q Consensus 263 ~~~v~~~g~-~~~~---e~~~~~~~adv~v~p-s~~e~~~~~--~~Ea~a~G~pvi~~~~~~ 317 (390)
.++|.+.|. +++. +..+.+..||++|.- +.....|.. +-.|...|.|+|.-+.+.
T Consensus 147 rP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~ 208 (222)
T cd01413 147 RPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADE 208 (222)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCC
Confidence 366777776 5543 345667789987764 222223332 334567899998877643
No 462
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=22.14 E-value=55 Score=28.07 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.4
Q ss_pred CCCcchhhhHhh-HhhhhcCCceeec
Q psy12587 1 MLGATARLTITA-TAWGATGPRTTAH 25 (390)
Q Consensus 1 ~~GG~~~~~~~l-~~L~~~G~~V~~~ 25 (390)
+.||..-.=..| ..|.+.||+|+++
T Consensus 3 iTGgTGlIG~~L~~~L~~~gh~v~il 28 (297)
T COG1090 3 ITGGTGLIGRALTARLRKGGHQVTIL 28 (297)
T ss_pred EeccccchhHHHHHHHHhCCCeEEEE
Confidence 468888888999 9999999999988
No 463
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=21.98 E-value=2.7e+02 Score=23.19 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCC
Q psy12587 212 AIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTP 291 (390)
Q Consensus 212 ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps 291 (390)
..+.++.+.+.+. ..+++|+...-+.+ -..++.+.+++..+ +.|.|.|..+ .+-..+|.+++||
T Consensus 16 ~~~~~~~~~~~gt-------dai~vGGS~~vt~~---~~~~~v~~ik~~~l-Pvilfp~~~~-----~i~~~aDa~l~~s 79 (223)
T TIGR01768 16 ADEIAKAAAESGT-------DAILIGGSQGVTYE---KTDTLIEALRRYGL-PIILFPSNPT-----NVSRDADALFFPS 79 (223)
T ss_pred cHHHHHHHHhcCC-------CEEEEcCCCcccHH---HHHHHHHHHhccCC-CEEEeCCCcc-----ccCcCCCEEEEEE
Confidence 3455556666543 36677765533221 12444555566665 4455555332 4567799999987
Q ss_pred C
Q psy12587 292 S 292 (390)
Q Consensus 292 ~ 292 (390)
.
T Consensus 80 v 80 (223)
T TIGR01768 80 V 80 (223)
T ss_pred e
Confidence 6
No 464
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=21.92 E-value=4.4e+02 Score=21.53 Aligned_cols=80 Identities=9% Similarity=0.072 Sum_probs=45.4
Q ss_pred CCChHHHHHHHHh--cceEEe----CCCCCCCCccHHhhhh---cCCCEEEe-cCCCcc---c-ceecCcceeeecC-CH
Q psy12587 271 SPSDAAKISLFKF--CHCIIY----TPSNEHFGIVPIEAMF---CKRPVIAV-NSGGPK---E-SVVDGRTGFLCES-NE 335 (390)
Q Consensus 271 ~~~~~e~~~~~~~--adv~v~----ps~~e~~~~~~~Ea~a---~G~pvi~~-~~~~~~---e-~i~~~~~g~~~~~-~~ 335 (390)
+-+.+++.+.+.. .|++++ +...+.-|+.+++.+. -++|||.- ...... . +.+.|..|++..+ +.
T Consensus 23 ~~~~~~~l~~~~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~ 102 (207)
T PRK11475 23 FSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTL 102 (207)
T ss_pred eCCHHHHHHHhccCCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCH
Confidence 3344444455443 356652 2223334566666553 25666653 222111 1 2246778999988 99
Q ss_pred HHHHHHHHHHhcCCh
Q psy12587 336 EAFAKAMKKIVDNDG 350 (390)
Q Consensus 336 ~~l~~~i~~l~~~~~ 350 (390)
+++.++|..+++...
T Consensus 103 ~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 103 EILQQELFLSLNGVR 117 (207)
T ss_pred HHHHHHHHHHHCCCc
Confidence 999999999887543
No 465
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=21.89 E-value=51 Score=25.97 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.9
Q ss_pred CCCcchhhhHhh-HhhhhcCCceeec
Q psy12587 1 MLGATARLTITA-TAWGATGPRTTAH 25 (390)
Q Consensus 1 ~~GG~~~~~~~l-~~L~~~G~~V~~~ 25 (390)
+.||....-..+ +.|.++||+|+.+
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~ 28 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTAL 28 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEE
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEE
Confidence 358888888889 9999999999988
No 466
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=21.87 E-value=4.8e+02 Score=21.89 Aligned_cols=15 Identities=7% Similarity=-0.073 Sum_probs=8.5
Q ss_pred HhhhhcCCCEEEecC
Q psy12587 301 IEAMFCKRPVIAVNS 315 (390)
Q Consensus 301 ~Ea~a~G~pvi~~~~ 315 (390)
-++...|.|||+-+.
T Consensus 81 ~~~~~~~ipvV~~~~ 95 (275)
T cd06295 81 ERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHhCCCCEEEECC
Confidence 344456777766543
No 467
>COG4378 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.82 E-value=1.5e+02 Score=20.46 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=49.7
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCc-cH--HhhhhcCCC
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGI-VP--IEAMFCKRP 309 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~-~~--~Ea~a~G~p 309 (390)
+.++|.... .-+.+...++|...--++.|.-+...-..+=+.-|++++...+-+-.+ .. -||--.+.|
T Consensus 3 vlviGaD~l---------g~I~~kL~e~GfskIeHvtgRk~~~~kk~Ips~~dlilvLtdf~nHNl~~~iK~eakk~~ip 73 (103)
T COG4378 3 VLVIGADEL---------GPIRAKLHELGFSKIEHVTGRKNRVNKKPIPSDTDLILVLTDFLNHNLMKKIKNEAKKRKIP 73 (103)
T ss_pred EEEEccccc---------ccHHHHHHhcChhheEEeeccccccccccCCCCccEEEEEhhhhcchHHHHHHHHHhhcCCC
Confidence 566776554 567788888998877788888555444456667776665444333232 22 489999999
Q ss_pred EEEecC
Q psy12587 310 VIAVNS 315 (390)
Q Consensus 310 vi~~~~ 315 (390)
++.+..
T Consensus 74 ~~~akR 79 (103)
T COG4378 74 LVCAKR 79 (103)
T ss_pred eEEeec
Confidence 999764
No 468
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=21.82 E-value=6.3e+02 Score=23.22 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=58.8
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
.+.+.+...+..+ ...+...++.+.+.+|+ +++.+.-..+.. .++.+. ..+-...+.+.+.-
T Consensus 50 ~~~iW~Ha~s~Ge---~~~~~~l~~~l~~~~~~-----~~i~~t~~t~~~--------~~~~~~--~~~~~~~~~~~P~d 111 (425)
T PRK05749 50 GPLIWFHAVSVGE---TRAAIPLIRALRKRYPD-----LPILVTTMTPTG--------SERAQA--LFGDDVEHRYLPYD 111 (425)
T ss_pred CCeEEEEeCCHHH---HHHHHHHHHHHHHhCCC-----CcEEEeCCCccH--------HHHHHH--hcCCCceEEEecCC
Confidence 5567788887774 45556666666677665 666555433321 222211 11111224455544
Q ss_pred ChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 273 SDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 273 ~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
....+..+++. -|+++... .|-++..+..+-..|+|++..+
T Consensus 112 ~~~~~~~~l~~~~Pd~v~~~~-~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 112 LPGAVRRFLRFWRPKLVIIME-TELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred cHHHHHHHHHhhCCCEEEEEe-cchhHHHHHHHHHCCCCEEEEe
Confidence 44555666654 57776532 3566777777788899998864
No 469
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=21.80 E-value=1.7e+02 Score=24.68 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=19.0
Q ss_pred ccHHhhhhcCCCEEE-ecCCCcccce
Q psy12587 298 IVPIEAMFCKRPVIA-VNSGGPKESV 322 (390)
Q Consensus 298 ~~~~Ea~a~G~pvi~-~~~~~~~e~i 322 (390)
.++.||--+|.|||+ .|+..-++.+
T Consensus 170 iAv~EA~klgIPVvAlvDTn~dpd~V 195 (252)
T COG0052 170 IAVKEANKLGIPVVALVDTNCDPDGV 195 (252)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCccC
Confidence 678999999999999 4444455544
No 470
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=21.64 E-value=4.7e+02 Score=23.17 Aligned_cols=52 Identities=10% Similarity=-0.002 Sum_probs=35.3
Q ss_pred cccccCCHHHHHHHHHHHHhhc---ccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe
Q psy12587 202 RYERKKNLELAIYSLNSLRSRL---SDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL 269 (390)
Q Consensus 202 ~~~~~K~~~~ll~a~~~l~~~~---~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~ 269 (390)
-+.-..++..+++++....+++ ++ ++++++|+. +.+++...+++..+++.+.
T Consensus 9 aMGGD~~P~~~v~ga~~al~~~~~~~~-----~~i~LvG~~-----------~~i~~~l~~~~~~~ri~iv 63 (316)
T PRK13846 9 LMGGDHSPLVVWEVLGDVLLSSSSEQP-----VEFTVFASS-----------EVHHQILSNSPLSRSPRII 63 (316)
T ss_pred ccCCCcChHHHHHHHHHHHHhcCCCCC-----eEEEEEeCH-----------HHHHHHHHhCCCcCceEEE
Confidence 3445678888888888777776 54 899999965 6676666654333355554
No 471
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=21.59 E-value=3.1e+02 Score=19.54 Aligned_cols=78 Identities=6% Similarity=0.020 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceE
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCI 287 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~ 287 (390)
|.+..+++++.- .+.++|+...-.. +..+++...++.++++ +..+.+.+|+...+....+.
T Consensus 21 G~~~v~~aik~g----------k~~lVI~A~D~s~-----~~kkki~~~~~~~~vp----~~~~~t~~eLg~a~Gk~~~~ 81 (104)
T PRK05583 21 GYNKCEEAIKKK----------KVYLIIISNDISE-----NSKNKFKNYCNKYNIP----YIEGYSKEELGNAIGRDEIK 81 (104)
T ss_pred cHHHHHHHHHcC----------CceEEEEeCCCCH-----hHHHHHHHHHHHcCCC----EEEecCHHHHHHHhCCCCeE
Confidence 456666666541 2666666544332 3447777777776653 33335778888888776555
Q ss_pred EeCCCCCCCCccHHhhh
Q psy12587 288 IYTPSNEHFGIVPIEAM 304 (390)
Q Consensus 288 v~ps~~e~~~~~~~Ea~ 304 (390)
++.-..+++.-.+++.+
T Consensus 82 ~iai~d~g~a~~l~~~~ 98 (104)
T PRK05583 82 ILGVKDKNMAKKLLKLW 98 (104)
T ss_pred EEEEeChHHHHHHHHHH
Confidence 54434455555555543
No 472
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=21.52 E-value=2.6e+02 Score=18.73 Aligned_cols=46 Identities=9% Similarity=0.168 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 334 NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 334 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+...+.+.+..++ ++. ++..+...-.++. +.-+.+..+..+..+++
T Consensus 4 ~~r~f~~q~~~LL-~~~-Er~~~~~~L~~Y~-~~~~Vd~LV~~L~~vLd 49 (78)
T cd07347 4 QAREFSQQVDHLL-TDA-EREQVTRALERYH-QERNVDDLVRDLYLVLD 49 (78)
T ss_pred HHHHHHHHHHHHC-CHH-HHHHHHHHHHHHH-hcCCHHHHHHHHHHHcC
Confidence 3456777888888 444 5777776666665 34477777777766654
No 473
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=21.49 E-value=5.3e+02 Score=22.19 Aligned_cols=119 Identities=15% Similarity=0.034 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC 284 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a 284 (390)
.++.+.++++..++.+.. +.+....- ....+.+.+|..++-+.+.+.|. +.|.+ .|...+.++..+++..
T Consensus 117 ~~~~~~~~i~~ak~~G~~-----v~~~~~~~-~d~~~~~~~~~~~~~~~~~~~g~-~~i~l~DT~G~~~P~~v~~lv~~l 189 (273)
T cd07941 117 NLAMIRDSVAYLKSHGRE-----VIFDAEHF-FDGYKANPEYALATLKAAAEAGA-DWLVLCDTNGGTLPHEIAEIVKEV 189 (273)
T ss_pred HHHHHHHHHHHHHHcCCe-----EEEeEEec-cccCCCCHHHHHHHHHHHHhCCC-CEEEEecCCCCCCHHHHHHHHHHH
Confidence 455666677777666542 44422211 01112344666666666667775 56665 4666777666555543
Q ss_pred c-------eEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHH
Q psy12587 285 H-------CIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMK 343 (390)
Q Consensus 285 d-------v~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~ 343 (390)
. +-++. ...+|+. .++|+..|.-.|-+..+|+.|-. |-. +.+.++..+.
T Consensus 190 ~~~~~~~~l~~H~--Hnd~Gla~An~laA~~aGa~~id~s~~GlGera-----Gn~---~~e~~~~~L~ 248 (273)
T cd07941 190 RERLPGVPLGIHA--HNDSGLAVANSLAAVEAGATQVQGTINGYGERC-----GNA---NLCSIIPNLQ 248 (273)
T ss_pred HHhCCCCeeEEEe--cCCCCcHHHHHHHHHHcCCCEEEEecccccccc-----ccc---cHHHHHHHHH
Confidence 2 33332 3445553 58899999999999999888743 211 6677777775
No 474
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=21.45 E-value=6.7e+02 Score=23.36 Aligned_cols=171 Identities=10% Similarity=0.053 Sum_probs=84.9
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCC-CCCCCeEEEEeecc--cccCCH
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPL-PGKEDIVFLSINRY--ERKKNL 209 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~i~~~g~~--~~~K~~ 209 (390)
+...|.|+-..+...+.+.+.....+++-+.|+..++.. ..-..-+...++...+. ..+-+.+.+....+ +...|.
T Consensus 59 l~E~dvVfGg~~kL~~aI~~~~~~~~P~~I~V~ttc~~~-iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~~~G~ 137 (429)
T cd03466 59 LNEETTVYGGEKNLKKGLKNVIEQYNPEVIGIATTCLSE-TIGEDVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGY 137 (429)
T ss_pred CCCCceEECcHHHHHHHHHHHHHhcCCCEEEEeCCchHH-HhhcCHHHHHHHHhhcccCCCCcEEEEECCCCcccHHHHH
Confidence 455677777777777777776554434445555544321 11111011111100000 01122232223223 233577
Q ss_pred HHHHHHHHHH-HhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcE------------------EEec
Q psy12587 210 ELAIYSLNSL-RSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNV------------------LFLT 270 (390)
Q Consensus 210 ~~ll~a~~~l-~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v------------------~~~g 270 (390)
+..++++-+. ..... .+-.+.|+|..... .-..+++++.++.|+..++ .+.|
T Consensus 138 ~~a~~al~~~~~~~~~----~~~~VNlig~~~~~-----~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~ 208 (429)
T cd03466 138 DTAVRSIVKNIAVDPD----KIEKINVIAGMMSP-----ADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSG 208 (429)
T ss_pred HHHHHHHHHHhccCCC----CCCcEEEECCCCCh-----hHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCC
Confidence 7777777542 22111 13467788753221 1138899999999985422 0113
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhh--cCCCEEEec
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMF--CKRPVIAVN 314 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a--~G~pvi~~~ 314 (390)
..+-+++ .-+.+|++-+.-+.....+..+.|+|. +|+|.+..+
T Consensus 209 g~~~~~i-~~~~~A~lniv~~~~~~~g~~~A~~L~e~~giP~~~~~ 253 (429)
T cd03466 209 GTPISEI-KGMGGAKATIELGMFVDHGLSAGSYLEEEFGIPNYRLP 253 (429)
T ss_pred CCCHHHH-HhhccCcEEEEEccCccchHHHHHHHHHHHCCCeeecC
Confidence 3344554 335666665544433344667777775 799977653
No 475
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=21.42 E-value=2.9e+02 Score=19.14 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCC
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTP 291 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps 291 (390)
-++++|.|-.. ..-....+++..++.|++ +.+.. .+-.++......+|+++.++
T Consensus 5 ILvvCgsG~~T---S~m~~~ki~~~l~~~gi~--~~v~~-~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 5 IIVACGGAVAT---STMAAEEIKELCQSHNIP--VELIQ-CRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred EEEECCCchhH---HHHHHHHHHHHHHHCCCe--EEEEE-ecHHHHhhhcCCCCEEEECC
Confidence 36778877542 111126777888888875 44443 45556666778889888754
No 476
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=21.38 E-value=3.9e+02 Score=20.65 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=38.7
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-CChHHHHHHHHh-----cceEEeCCCCCCCCccHHhhhhc
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-PSDAAKISLFKF-----CHCIIYTPSNEHFGIVPIEAMFC 306 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~-~~~~e~~~~~~~-----adv~v~ps~~e~~~~~~~Ea~a~ 306 (390)
.++.|+..+ ..+.++.....+++|++-.+...+- ...+++.++++. ++++|.-.-.+ -.+.-+=|-..
T Consensus 4 ~Ii~gs~SD-----~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~-a~Lpgvva~~t 77 (150)
T PF00731_consen 4 AIIMGSTSD-----LPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMS-AALPGVVASLT 77 (150)
T ss_dssp EEEESSGGG-----HHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS---HHHHHHHHS
T ss_pred EEEeCCHHH-----HHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCc-ccchhhheecc
Confidence 345555433 3666777777777776655555543 344555566544 46666543211 12222224455
Q ss_pred CCCEEEecC
Q psy12587 307 KRPVIAVNS 315 (390)
Q Consensus 307 G~pvi~~~~ 315 (390)
-+|||+-+.
T Consensus 78 ~~PVIgvP~ 86 (150)
T PF00731_consen 78 TLPVIGVPV 86 (150)
T ss_dssp SS-EEEEEE
T ss_pred CCCEEEeec
Confidence 788888553
No 477
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=21.35 E-value=4.8e+02 Score=21.63 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHcCCCCcEEE-ecCCChHHHHHHHHhcceEEeCCC--------CCCCCc--cHHhhhhcCCCEEEec
Q psy12587 246 NVEYYKELGVLVKKLKLSDNVLF-LTSPSDAAKISLFKFCHCIIYTPS--------NEHFGI--VPIEAMFCKRPVIAVN 314 (390)
Q Consensus 246 ~~~y~~~~~~~~~~~~l~~~v~~-~g~~~~~e~~~~~~~adv~v~ps~--------~e~~~~--~~~Ea~a~G~pvi~~~ 314 (390)
...|.++.++..+++|+. -..+ +..-+.+++.+.+..+|++.+..- +-..|+ .+.|+...|+|.|...
T Consensus 47 ~~~Yv~k~~~~l~~lg~~-v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~S 125 (224)
T COG3340 47 DDFYVEKVRNALAKLGLE-VSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWS 125 (224)
T ss_pred hHHHHHHHHHHHHHcCCe-eeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEec
Confidence 456889999999999873 2333 344566778888899998876421 011222 4679999999999866
Q ss_pred CCC
Q psy12587 315 SGG 317 (390)
Q Consensus 315 ~~~ 317 (390)
.|+
T Consensus 126 AGA 128 (224)
T COG3340 126 AGA 128 (224)
T ss_pred cCc
Confidence 543
No 478
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.32 E-value=1.9e+02 Score=23.37 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCC-----------CCCccHHhhhhcCCCEEEecCC
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNE-----------HFGIVPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e-----------~~~~~~~Ea~a~G~pvi~~~~~ 316 (390)
..+.+..+.+|.+ +.+... .+ -+..+|.+++|...+ +....+.++...|+|+++.-.|
T Consensus 13 ~~~~~~l~~~g~~--v~~~~~--~~----~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 13 RSVANALKRLGVE--AVVSSD--PE----EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLG 81 (199)
T ss_pred HHHHHHHHHCCCc--EEEEcC--hH----HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHh
Confidence 6777777887753 555422 22 346789999886322 2223466777889999986543
No 479
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=21.26 E-value=5.9e+02 Score=22.65 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEecC
Q psy12587 210 ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLTS 271 (390)
Q Consensus 210 ~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g~ 271 (390)
+..++|+..+.++.. ++.+++|+. +.+++.+++++++ +.+.+...
T Consensus 26 ~~vl~Aa~~a~~eg~------~~piLvG~~-----------~~I~~~~~~~g~~~~~~eII~~ 71 (324)
T PRK09653 26 ERVLKAAKRLQKEGL------VEPILLGNP-----------EEIRAKAKELGLDLDGVEIIDP 71 (324)
T ss_pred HHHHHHHHHHHHCCC------ceEEEECCH-----------HHHHHHHHHcCCCcCCCEEECC
Confidence 556777777777632 788888865 7788888877652 34555543
No 480
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=21.24 E-value=7.1e+02 Score=24.32 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=45.9
Q ss_pred CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC------CcccceecCcceeeecC-CHH
Q psy12587 264 DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG------GPKESVVDGRTGFLCES-NEE 336 (390)
Q Consensus 264 ~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~------~~~e~i~~~~~g~~~~~-~~~ 336 (390)
+.|.+...+...++..+-..-=..+........+.+.+=|-+.|+|.|+.-.+ .-..++-++..|.++.. +.+
T Consensus 154 ~~IlVa~~l~Ps~~~~l~~~~i~Givt~~Gg~tSH~aIlAR~lgIP~vvg~~~~~~~~~~G~~v~vDg~~G~v~~~P~~~ 233 (565)
T TIGR01417 154 EVILVAEDLTPSETAQLNLKYVKGFLTDAGGKTSHTAIMARSLEIPAIVGTKSVTSQVKNGDTVIIDGVKGIVIFNPSSE 233 (565)
T ss_pred CeEEEecCCCHHHHHHhhhhheeEEEEccCCCcchHHHHHHHcCCCEEEcchhHHhhCCCCCEEEEECCCCEEEeCCCHH
Confidence 45677777888876665443333344333333445566699999999985422 22334557888988764 655
Q ss_pred HH
Q psy12587 337 AF 338 (390)
Q Consensus 337 ~l 338 (390)
.+
T Consensus 234 ~~ 235 (565)
T TIGR01417 234 TI 235 (565)
T ss_pred HH
Confidence 44
No 481
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=21.20 E-value=3e+02 Score=24.06 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=36.6
Q ss_pred HhcceEEeCCCCCCCCccHHhhh----hcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCC
Q psy12587 282 KFCHCIIYTPSNEHFGIVPIEAM----FCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDND 349 (390)
Q Consensus 282 ~~adv~v~ps~~e~~~~~~~Ea~----a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~ 349 (390)
..+|+++.-. .-.++++|. ..++|++.-+.| ..|++.+.+++++.+.+.++++..
T Consensus 62 ~~~d~vi~~G----GDGt~l~~~~~~~~~~~pilGIn~G---------~lGFL~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 62 ARADLAVVLG----GDGTMLGIGRQLAPYGVPLIGINHG---------RLGFITDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred cCCCEEEEEC----CcHHHHHHHHHhcCCCCCEEEEcCC---------CccccccCCHHHHHHHHHHHHcCC
Confidence 3578877532 122444443 358899987754 347777558899999999988754
No 482
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=21.13 E-value=83 Score=26.99 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHcCCCCc-------------EEEecCCChHHHHHHHHhcceEEeCCC-CCCCCccHHhhhhcCCCEEE
Q psy12587 247 VEYYKELGVLVKKLKLSDN-------------VLFLTSPSDAAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 247 ~~y~~~~~~~~~~~~l~~~-------------v~~~g~~~~~e~~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~ 312 (390)
.-|.++++.+...+|+++. |.++|.++.+. .++++.||.++.--. ..++-..+-+|.+.=+||=+
T Consensus 168 ~LfKDEVR~lg~~LGlp~~iv~RhPFPGPGLaiRilGevt~Ek-l~ilR~Ad~I~~eEl~~agly~~~wQaFavll~vks 246 (315)
T COG0519 168 ELFKDEVRELGRELGLPEEIVYRHPFPGPGLAVRILGEVTREK-LEILREADAIVEEELRKAGLYDKIWQAFAVLLPVKS 246 (315)
T ss_pred HHhHHHHHHHHHHhCCCHHHhccCCCCCCCeEEEeecccCHHH-HHHHHHHhHHHHHHHHhcCcchhhhHHHhhccccce
Confidence 3566889999999998754 77888888776 699999998775422 34556678889998888766
Q ss_pred ecC
Q psy12587 313 VNS 315 (390)
Q Consensus 313 ~~~ 315 (390)
...
T Consensus 247 vGV 249 (315)
T COG0519 247 VGV 249 (315)
T ss_pred eee
Confidence 543
No 483
>CHL00067 rps2 ribosomal protein S2
Probab=21.12 E-value=2.6e+02 Score=23.45 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=19.6
Q ss_pred ccHHhhhhcCCCEEE-ecCCCcccce
Q psy12587 298 IVPIEAMFCKRPVIA-VNSGGPKESV 322 (390)
Q Consensus 298 ~~~~Ea~a~G~pvi~-~~~~~~~e~i 322 (390)
..+-||.-+|.|+|+ .|....++.+
T Consensus 175 ~ai~Ea~~l~IPvIaivDTn~~p~~i 200 (230)
T CHL00067 175 TALRECRKLGIPTISILDTNCDPDLA 200 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 689999999999999 5555555554
No 484
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=21.07 E-value=3e+02 Score=19.18 Aligned_cols=45 Identities=9% Similarity=0.080 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE
Q psy12587 206 KKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF 268 (390)
Q Consensus 206 ~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~ 268 (390)
.-|+..++..++++.++ +.++.++|-. +.+.+..+..|+.+.+.+
T Consensus 54 ssgi~~L~~~~~~~~~~-------g~~l~l~~~~-----------~~v~~~l~~~gl~~~~~i 98 (106)
T TIGR02886 54 SSGLGVILGRYKKIKNE-------GGEVIVCNVS-----------PAVKRLFELSGLFKIIRI 98 (106)
T ss_pred chHHHHHHHHHHHHHHc-------CCEEEEEeCC-----------HHHHHHHHHhCCceEEEE
Confidence 34788888888888775 4678888854 677777777777554443
No 485
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.07 E-value=5.7e+02 Score=22.43 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhh---cccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcE-EEecCCChHHHHHHHHhc
Q psy12587 210 ELAIYSLNSLRSR---LSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNV-LFLTSPSDAAKISLFKFC 284 (390)
Q Consensus 210 ~~ll~a~~~l~~~---~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v-~~~g~~~~~e~~~~~~~a 284 (390)
+.+-+.++.++.+ .| .+..+.+|+.+. ...|...-.+.+++.|+.-.+ .+...++.+|+.+.+...
T Consensus 16 ~~i~~~v~~l~~~~g~~p-----~La~i~vg~~~~----s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~l 85 (296)
T PRK14188 16 ATVAAEVARLKAAHGVTP-----GLAVVLVGEDPA----SQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARL 85 (296)
T ss_pred HHHHHHHHHHHHccCCCC-----eEEEEEeCCChh----HHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444445555433 24 377788887654 457878888999999986333 444568888888888854
No 486
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=21.06 E-value=4.9e+02 Score=21.64 Aligned_cols=28 Identities=14% Similarity=-0.060 Sum_probs=14.8
Q ss_pred HHHHHhcceEEeCCCCCCCCccHHhhhh
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIVPIEAMF 305 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~~~Ea~a 305 (390)
.+.+..+|++|..+...-++-..++.|+
T Consensus 92 ~~~l~~~dvlIgaT~~G~~~~~~l~~m~ 119 (226)
T cd05311 92 KEALKGADVFIGVSRPGVVKKEMIKKMA 119 (226)
T ss_pred HHHHhcCCEEEeCCCCCCCCHHHHHhhC
Confidence 3556678888776642223323445444
No 487
>KOG4202|consensus
Probab=21.04 E-value=3.9e+02 Score=21.25 Aligned_cols=38 Identities=16% Similarity=0.011 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeC
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYT 290 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~p 290 (390)
+.+...+.+.++ +-|.++|.-+.+++.. +-.--+-++|
T Consensus 105 e~il~~~~~~~l-diVQLHG~es~~~~~~-L~rpvikvfp 142 (227)
T KOG4202|consen 105 ETILRAADSSDL-DIVQLHGNESRAAFSR-LVRPVIKVFP 142 (227)
T ss_pred HHHHHHHhhcCC-ceEEecCcccHHHHHH-hCCceEEEEe
Confidence 566667777776 5677777766665433 3333344554
No 488
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=21.00 E-value=2.3e+02 Score=19.93 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCC
Q psy12587 207 KNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSD 264 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~ 264 (390)
-|+..+.+..+.++.. +.++.++|-. +.+.+..+..|+..
T Consensus 57 sg~~~l~~~~~~~~~~-------g~~l~l~g~~-----------~~v~~~l~~~gl~~ 96 (109)
T cd07041 57 AVARHLLRLARALRLL-------GARTILTGIR-----------PEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHHHHHHc-------CCeEEEEeCC-----------HHHHHHHHHhCCCh
Confidence 3677777777777765 3678888855 66777777777644
No 489
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=20.95 E-value=5.7e+02 Score=22.35 Aligned_cols=65 Identities=14% Similarity=0.276 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEecCCChHH-H---HHHHH--
Q psy12587 210 ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLTSPSDAA-K---ISLFK-- 282 (390)
Q Consensus 210 ~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g~~~~~e-~---~~~~~-- 282 (390)
+..++|+..+.+.. .++++++|+. +.+++.++++++. +++.+...-+..+ + ..+++
T Consensus 24 ~~vl~A~~~~~~~~------~~~~iLvG~~-----------~~I~~~~~~~~l~~~~ieIi~~~~~~~s~~~a~~lv~~G 86 (294)
T TIGR02706 24 EPVLEAVKEAKEHG------IARAILVGDE-----------EKINEIAKKIGMNLDDVEIVNAPSPKKAALLAVRLVSTG 86 (294)
T ss_pred HHHHHHHHHHHHCC------CceEEEECCH-----------HHHHHHHHHcCCCccCcEEECCCCcHHHHHHHHHHHHCC
Confidence 55678877776653 3789999975 7788888887652 4566655432221 1 34455
Q ss_pred hcceEEeCC
Q psy12587 283 FCHCIIYTP 291 (390)
Q Consensus 283 ~adv~v~ps 291 (390)
.+|.++...
T Consensus 87 ~aD~~vsg~ 95 (294)
T TIGR02706 87 KADMLMKGL 95 (294)
T ss_pred CCCEEEeCC
Confidence 688888644
No 490
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=20.92 E-value=5.8e+02 Score=22.43 Aligned_cols=95 Identities=11% Similarity=0.142 Sum_probs=54.1
Q ss_pred EEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChH
Q psy12587 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDA 275 (390)
Q Consensus 196 ~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~ 275 (390)
+|+..|+- ..++..+....+++. ++++++.-+-|... . ..+-....+.|++ +.+ +++.
T Consensus 118 ~ILT~~~S------~tv~~~l~~a~~~~~-----~f~V~v~EsrP~~~----G--~~~a~~L~~~gI~--vtl---I~Ds 175 (301)
T TIGR00511 118 VVMTHCNS------EAALSVIKTAFEQGK-----DIEVIATETRPRKQ----G--HITAKELRDYGIP--VTL---IVDS 175 (301)
T ss_pred EEEEECCc------HHHHHHHHHHHHcCC-----cEEEEEecCCCcch----H--HHHHHHHHHCCCC--EEE---Eehh
Confidence 45555543 344455555544443 38887776655430 1 2333444455653 333 4667
Q ss_pred HHHHHHHhcceEEeCCC--C-CC-----CCc--cHHhhhhcCCCEEE
Q psy12587 276 AKISLFKFCHCIIYTPS--N-EH-----FGI--VPIEAMFCKRPVIA 312 (390)
Q Consensus 276 e~~~~~~~adv~v~ps~--~-e~-----~~~--~~~Ea~a~G~pvi~ 312 (390)
.+..+|+.+|.+++... . .| .|. ..+=|-.+++|+++
T Consensus 176 a~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V 222 (301)
T TIGR00511 176 AVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMV 222 (301)
T ss_pred HHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEE
Confidence 77889999999888644 1 22 111 23446778999987
No 491
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=20.77 E-value=8.7e+02 Score=24.41 Aligned_cols=119 Identities=10% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC--CcEEEecCCCh--HHHHH------
Q psy12587 210 ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS--DNVLFLTSPSD--AAKIS------ 279 (390)
Q Consensus 210 ~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~--~~v~~~g~~~~--~e~~~------ 279 (390)
+..++|+..+.+++- +.++++|+. +.+++.++++|++ +.+.+... +. ++..+
T Consensus 388 ~~~l~Aa~~~~~~g~------~~~iLvG~~-----------~~I~~~~~~~~~~l~~~~~Ii~~-~~~~~~~~~~~~~lr 449 (684)
T PRK05632 388 PRTLKAAAICLERGI------ADCVLLGNP-----------EEIRRVAAAQGVDLPAGIEIIDP-SEVRERYVAPLVELR 449 (684)
T ss_pred HHHHHHHHHHHHcCC------ceEEEECCH-----------HHHHHHHHHcCCCccCCcEEECC-chhHHHHHHHHHHHH
Q ss_pred -----------------------HHH--hcceEEeCCCCCCCCccHHhhhhc-----CCCEEE--ecCCCcccceecCcc
Q psy12587 280 -----------------------LFK--FCHCIIYTPSNEHFGIVPIEAMFC-----KRPVIA--VNSGGPKESVVDGRT 327 (390)
Q Consensus 280 -----------------------~~~--~adv~v~ps~~e~~~~~~~Ea~a~-----G~pvi~--~~~~~~~e~i~~~~~ 327 (390)
+++ .+|.++ .....+.+..+-.++.. |.-.++ .-..-....+-=.++
T Consensus 450 ~~kg~s~~~a~~~~~~~~~~a~~mv~~G~aD~lv-sG~~~Tt~~~l~~~l~~i~~~~g~~~~s~~~~~~~p~~~~~~~D~ 528 (684)
T PRK05632 450 KHKGMTEEVAREQLEDNVYFGTMMLALGEVDGLV-SGAVHTTANTIRPALQLIKTAPGSSLVSSVFFMLLPDQVLVYGDC 528 (684)
T ss_pred hcCCCCHHHHHHHhhcchHHHHHHHHCCCCCEEe-cCCCCChHHHHHHHHHHhccCCCCceEEEEEEEEcCCceEEEecC
Q ss_pred eeeecCCHHHHHHHHHHHhc
Q psy12587 328 GFLCESNEEAFAKAMKKIVD 347 (390)
Q Consensus 328 g~~~~~~~~~l~~~i~~l~~ 347 (390)
|...+++++++++.......
T Consensus 529 gvn~~P~~e~l~~ia~~aa~ 548 (684)
T PRK05632 529 AVNPDPTAEQLAEIAIQSAD 548 (684)
T ss_pred eeeCCCCHHHHHHHHHHHHH
No 492
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=20.59 E-value=3.3e+02 Score=20.18 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=31.2
Q ss_pred CeEEEEeeccc--ccCCHHHHHHHHHHHHhhcccccccceEEEEEc
Q psy12587 194 DIVFLSINRYE--RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAG 237 (390)
Q Consensus 194 ~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G 237 (390)
.+...|.|... ..+|.+.+=+|+.++........+..+.+.+.-
T Consensus 3 ~f~~~yLG~~~V~~p~Gmdvln~AI~~l~~~~~~~~w~~V~vsvap 48 (124)
T cd01271 3 VFRVQYLGMLPVDKPTGMEILNSAIDNLMSSSNKEDWLSVNVNVAP 48 (124)
T ss_pred EEEEEEeccEeecCCccHHHHHHHHHHHHhcCCcccCceEEEEeCC
Confidence 46678888874 678999999999999876654334445555543
No 493
>PRK06849 hypothetical protein; Provisional
Probab=20.53 E-value=1.5e+02 Score=27.06 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.3
Q ss_pred CCCcchhhhHhh-HhhhhcCCceeec
Q psy12587 1 MLGATARLTITA-TAWGATGPRTTAH 25 (390)
Q Consensus 1 ~~GG~~~~~~~l-~~L~~~G~~V~~~ 25 (390)
++||.....+.+ ++|.+.||+|++.
T Consensus 9 I~G~~~~~~l~iar~l~~~G~~Vi~~ 34 (389)
T PRK06849 9 ITGARAPAALELARLFHNAGHTVILA 34 (389)
T ss_pred EeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 357777788999 9999999999887
No 494
>PRK11890 phosphate acetyltransferase; Provisional
Probab=20.47 E-value=4.7e+02 Score=23.13 Aligned_cols=117 Identities=9% Similarity=0.050 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEecCCChHHHHH----H--HH
Q psy12587 210 ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLTSPSDAAKIS----L--FK 282 (390)
Q Consensus 210 ~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g~~~~~e~~~----~--~~ 282 (390)
...++|+.+..+++- +..+++|+. +.+++.++++|+. +.+.+...-+..+..+ + ..
T Consensus 33 ~~vl~Aa~~a~~~gl------~~piLvG~~-----------~~I~~~a~~~g~dl~~~eII~~~~~~~~a~~av~mV~~G 95 (312)
T PRK11890 33 ESSLRGAVEAAQLGL------ITPILVGPR-----------ARIEAVAAECGLDLSGYEIVDAPHSHAAAAKAVELVREG 95 (312)
T ss_pred HHHHHHHHHHHHcCC------EEEEEECCH-----------HHHHHHHHHcCCCcCCCEEECCCChHHHHHHHHHHHHcC
Confidence 567888888888765 778889865 7899999998864 3456666544433211 1 22
Q ss_pred hcceEEeCCCCCCCCccHHh-hhh--cCC---CEEEe----cCCCcccceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 283 FCHCIIYTPSNEHFGIVPIE-AMF--CKR---PVIAV----NSGGPKESVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 283 ~adv~v~ps~~e~~~~~~~E-a~a--~G~---pvi~~----~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
.+|+++--..... .++- ++. .|+ .++++ ..++...++-=.++|+...||.+++++.+....
T Consensus 96 ~AD~lmkG~i~Tt---~~lra~l~~~~gl~~~~~lS~v~i~~~p~~~~~l~~tD~~vn~~P~~eq~a~I~~~a~ 166 (312)
T PRK11890 96 EAEALMKGSLHTD---ELMSAVVARDTGLRTERRISHVFVMDVPGYPKPLIITDAAVNIAPTLEDKADIVQNAI 166 (312)
T ss_pred CCCEEecCCcccH---HHHHHHHhHhcCCCCCCeEEEEEEEEecCCCcEEEEecCeecCCcCHHHHHHHHHHHH
Confidence 3665554322111 1221 111 232 23332 111222233223456666568888888766543
No 495
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.11 E-value=5.5e+02 Score=21.82 Aligned_cols=117 Identities=14% Similarity=0.149 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc-
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC- 284 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a- 284 (390)
++.+.++++..++.+.. +.+.+. ...+.+.++..++-+.+.+.|. +.|.+ .|...+.++..++...
T Consensus 109 ~~~~~~~i~~a~~~G~~-----v~~~~~----~~~~~~~~~~~~~~~~~~~~G~-~~i~l~DT~G~~~P~~v~~lv~~l~ 178 (259)
T cd07939 109 LDQLRRLVGRAKDRGLF-----VSVGAE----DASRADPDFLIEFAEVAQEAGA-DRLRFADTVGILDPFTTYELIRRLR 178 (259)
T ss_pred HHHHHHHHHHHHHCCCe-----EEEeec----cCCCCCHHHHHHHHHHHHHCCC-CEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 44555666666665432 443322 2222344666666666677775 56666 4667777776666543
Q ss_pred -----ceEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHH
Q psy12587 285 -----HCIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKI 345 (390)
Q Consensus 285 -----dv~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l 345 (390)
.+-++. ...+|+. .++|+..|+-.|-+..+|+.+- .|-. ..|+++..+...
T Consensus 179 ~~~~~~l~~H~--Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~~-----aGN~---~tE~lv~~l~~~ 237 (259)
T cd07939 179 AATDLPLEFHA--HNDLGLATANTLAAVRAGATHVSVTVNGLGER-----AGNA---ALEEVVMALKHL 237 (259)
T ss_pred HhcCCeEEEEe--cCCCChHHHHHHHHHHhCCCEEEEeccccccc-----ccCc---CHHHHHHHHHHh
Confidence 233333 3444543 6889999999999988888852 2211 678888888776
Done!