Query psy12587
Match_columns 390
No_of_seqs 367 out of 2065
Neff 11.1
Searched_HMMs 29240
Date Fri Aug 16 23:08:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c48_A Predicted glycosyltrans 100.0 4.3E-47 1.5E-51 350.0 33.4 369 2-388 41-429 (438)
2 3fro_A GLGA glycogen synthase; 100.0 6.2E-47 2.1E-51 349.0 34.1 367 2-388 17-434 (439)
3 2jjm_A Glycosyl transferase, g 100.0 3.1E-46 1.1E-50 339.4 32.5 352 2-388 26-389 (394)
4 2r60_A Glycosyl transferase, g 100.0 5.7E-47 1.9E-51 354.6 26.9 379 2-388 32-463 (499)
5 3okp_A GDP-mannose-dependent a 100.0 2.3E-45 7.9E-50 333.8 29.5 344 2-389 18-384 (394)
6 3s28_A Sucrose synthase 1; gly 100.0 4.5E-45 1.5E-49 350.3 28.5 377 2-384 301-769 (816)
7 1rzu_A Glycogen synthase 1; gl 100.0 1.3E-43 4.5E-48 330.8 29.0 293 75-388 129-479 (485)
8 2qzs_A Glycogen synthase; glyc 100.0 9.7E-43 3.3E-47 324.9 30.3 293 75-388 128-480 (485)
9 2iw1_A Lipopolysaccharide core 100.0 9.6E-44 3.3E-48 320.9 22.7 347 2-386 13-373 (374)
10 2gek_A Phosphatidylinositol ma 100.0 4E-43 1.4E-47 320.3 25.6 340 2-388 34-387 (406)
11 2x6q_A Trehalose-synthase TRET 100.0 6.4E-43 2.2E-47 319.9 25.0 349 2-385 52-415 (416)
12 3vue_A GBSS-I, granule-bound s 100.0 1.1E-41 3.9E-46 317.3 32.6 290 76-385 153-512 (536)
13 3oy2_A Glycosyltransferase B73 100.0 2.2E-42 7.6E-47 316.0 27.4 343 2-388 13-394 (413)
14 2iuy_A Avigt4, glycosyltransfe 100.0 2.6E-42 9E-47 307.5 23.9 298 2-389 29-340 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 1E-37 3.5E-42 282.6 14.6 268 75-387 131-412 (413)
16 2hy7_A Glucuronosyltransferase 100.0 1.8E-34 6.2E-39 261.7 17.3 245 75-385 123-380 (406)
17 1f0k_A MURG, UDP-N-acetylgluco 100.0 1.2E-33 4E-38 253.9 21.9 322 2-387 16-360 (364)
18 3nb0_A Glycogen [starch] synth 100.0 1.3E-32 4.5E-37 252.5 24.2 310 75-388 180-637 (725)
19 1uqt_A Alpha, alpha-trehalose- 100.0 2E-31 6.9E-36 244.1 29.4 292 75-384 122-454 (482)
20 2vsy_A XCC0866; transferase, g 100.0 3.6E-32 1.2E-36 258.4 22.3 314 2-388 217-563 (568)
21 1vgv_A UDP-N-acetylglucosamine 100.0 5.9E-32 2E-36 244.6 17.5 283 72-387 81-379 (384)
22 3beo_A UDP-N-acetylglucosamine 100.0 6.4E-32 2.2E-36 243.5 17.5 273 72-382 90-374 (375)
23 3t5t_A Putative glycosyltransf 100.0 1.7E-29 6E-34 228.2 30.6 295 76-386 149-475 (496)
24 2bfw_A GLGA glycogen synthase; 100.0 4.5E-31 1.5E-35 216.4 17.8 185 165-369 2-200 (200)
25 3qhp_A Type 1 capsular polysac 100.0 7.3E-30 2.5E-34 202.6 16.8 162 194-376 2-166 (166)
26 2xci_A KDO-transferase, 3-deox 100.0 1.1E-27 3.7E-32 214.5 23.3 296 2-370 49-366 (374)
27 2f9f_A First mannosyl transfer 100.0 7E-28 2.4E-32 192.9 13.8 150 193-361 22-175 (177)
28 1v4v_A UDP-N-acetylglucosamine 99.9 8.2E-27 2.8E-31 210.2 18.3 273 72-386 86-366 (376)
29 3rhz_A GTF3, nucleotide sugar 99.9 4.5E-25 1.5E-29 192.9 19.8 242 75-377 73-329 (339)
30 3dzc_A UDP-N-acetylglucosamine 99.9 2.4E-23 8E-28 187.6 16.7 272 72-381 106-394 (396)
31 3s2u_A UDP-N-acetylglucosamine 99.9 8.6E-22 2.9E-26 175.7 24.1 320 4-382 14-356 (365)
32 3otg_A CALG1; calicheamicin, T 99.9 1.4E-22 4.8E-27 184.7 18.3 334 3-383 31-409 (412)
33 3ot5_A UDP-N-acetylglucosamine 99.9 9.7E-23 3.3E-27 183.7 16.2 271 72-380 109-391 (403)
34 2iyf_A OLED, oleandomycin glyc 99.9 4.7E-21 1.6E-25 175.6 20.0 340 3-385 18-402 (430)
35 3tsa_A SPNG, NDP-rhamnosyltran 99.8 1.8E-20 6E-25 169.6 11.6 162 192-382 217-388 (391)
36 4fzr_A SSFS6; structural genom 99.8 3.9E-20 1.3E-24 167.7 13.3 154 192-378 226-396 (398)
37 3ia7_A CALG4; glycosysltransfe 99.8 9.7E-19 3.3E-23 158.8 17.9 336 4-383 16-399 (402)
38 3oti_A CALG3; calicheamicin, T 99.8 2.4E-18 8.2E-23 155.9 18.5 325 3-381 31-396 (398)
39 4hwg_A UDP-N-acetylglucosamine 99.8 1.1E-18 3.9E-23 155.7 15.6 269 72-381 89-374 (385)
40 3rsc_A CALG2; TDP, enediyne, s 99.8 2.6E-17 8.8E-22 150.0 20.3 161 192-383 246-414 (415)
41 2p6p_A Glycosyl transferase; X 99.8 6.7E-17 2.3E-21 145.7 20.1 327 3-382 11-379 (384)
42 2yjn_A ERYCIII, glycosyltransf 99.7 3.5E-15 1.2E-19 136.8 20.2 157 193-382 267-435 (441)
43 2iya_A OLEI, oleandomycin glyc 99.6 4.8E-14 1.7E-18 128.7 21.8 160 192-382 254-421 (424)
44 3q3e_A HMW1C-like glycosyltran 99.6 1.1E-14 3.8E-19 133.9 17.0 265 72-385 344-624 (631)
45 4amg_A Snogd; transferase, pol 99.6 9.1E-14 3.1E-18 125.9 18.3 158 192-380 236-398 (400)
46 3h4t_A Glycosyltransferase GTF 99.6 6.1E-14 2.1E-18 127.0 16.3 155 192-382 220-382 (404)
47 1iir_A Glycosyltransferase GTF 99.5 2.9E-12 1E-16 116.4 19.9 154 193-386 238-400 (415)
48 2c4m_A Glycogen phosphorylase; 99.4 1E-11 3.4E-16 116.8 19.5 252 127-386 394-721 (796)
49 2gj4_A Glycogen phosphorylase, 99.4 1.5E-10 5.2E-15 109.4 26.2 209 128-338 430-707 (824)
50 1rrv_A Glycosyltransferase GTF 99.4 1.3E-11 4.3E-16 112.3 17.7 135 193-362 237-382 (416)
51 1l5w_A Maltodextrin phosphoryl 99.4 1.1E-11 3.7E-16 116.6 17.0 252 128-386 406-732 (796)
52 2o6l_A UDP-glucuronosyltransfe 99.3 2.7E-12 9.1E-17 101.4 7.9 131 193-356 21-161 (170)
53 4gyw_A UDP-N-acetylglucosamine 99.1 9.6E-09 3.3E-13 99.1 22.8 186 183-387 514-708 (723)
54 2c1x_A UDP-glucose flavonoid 3 98.6 2.9E-06 1E-10 77.5 19.9 145 192-363 270-425 (456)
55 2pq6_A UDP-glucuronosyl/UDP-gl 98.6 4.3E-06 1.5E-10 77.1 20.5 149 193-364 295-453 (482)
56 2acv_A Triterpene UDP-glucosyl 98.6 7.9E-05 2.7E-09 68.2 28.7 139 193-355 276-432 (463)
57 3hbf_A Flavonoid 3-O-glucosylt 98.5 2.4E-05 8.3E-10 70.9 22.3 204 132-363 212-427 (454)
58 2vch_A Hydroquinone glucosyltr 98.3 0.00057 1.9E-08 62.8 26.4 78 266-348 341-429 (480)
59 3hbm_A UDP-sugar hydrolase; PS 98.3 1.5E-05 5.2E-10 67.3 13.9 96 193-315 157-252 (282)
60 1psw_A ADP-heptose LPS heptosy 98.2 0.00016 5.4E-09 63.6 18.2 102 192-313 179-286 (348)
61 3tov_A Glycosyl transferase fa 97.9 0.00023 8E-09 62.5 13.8 102 192-314 184-287 (349)
62 3l7i_A Teichoic acid biosynthe 97.8 0.00049 1.7E-08 66.9 15.8 187 133-350 476-685 (729)
63 1ygp_A Yeast glycogen phosphor 97.4 0.003 1E-07 60.2 13.9 148 193-340 599-768 (879)
64 1xv5_A AGT, DNA alpha-glucosyl 96.8 0.11 3.9E-06 40.4 25.6 318 4-375 16-393 (401)
65 2gt1_A Lipopolysaccharide hept 96.7 0.0077 2.6E-07 52.2 9.2 133 193-349 178-323 (326)
66 2jzc_A UDP-N-acetylglucosamine 96.6 0.0019 6.6E-08 52.1 4.6 73 265-345 115-196 (224)
67 4g65_A TRK system potassium up 92.9 2 6.9E-05 38.9 13.4 131 207-347 219-366 (461)
68 4fyk_A Deoxyribonucleoside 5'- 89.1 4.8 0.00016 29.9 9.8 69 278-348 63-142 (152)
69 3ehd_A Uncharacterized conserv 82.8 1.9 6.5E-05 32.5 4.9 68 278-346 64-161 (162)
70 3h5i_A Response regulator/sens 81.5 12 0.00042 26.7 11.0 106 231-347 6-123 (140)
71 3h1g_A Chemotaxis protein CHEY 78.3 12 0.00041 26.3 8.0 108 231-348 6-127 (129)
72 3heb_A Response regulator rece 77.1 8.1 0.00028 28.2 7.0 107 231-346 5-133 (152)
73 1k68_A Phytochrome response re 77.1 9.4 0.00032 27.1 7.2 108 231-347 3-130 (140)
74 2f62_A Nucleoside 2-deoxyribos 74.1 25 0.00087 26.3 11.3 37 278-314 62-105 (161)
75 3hzh_A Chemotaxis response reg 73.8 15 0.0005 27.0 7.7 107 231-347 37-156 (157)
76 3kcn_A Adenylate cyclase homol 73.7 11 0.00038 27.4 6.9 108 231-350 5-125 (151)
77 1rcu_A Conserved hypothetical 73.3 1.7 5.8E-05 34.0 2.2 66 278-345 113-192 (195)
78 2qsj_A DNA-binding response re 73.1 21 0.00071 25.9 8.4 110 231-350 4-126 (154)
79 4e7p_A Response regulator; DNA 72.6 21 0.0007 25.8 8.2 77 274-350 55-142 (150)
80 3ilh_A Two component response 71.2 25 0.00084 25.0 8.3 111 231-350 10-141 (146)
81 3q0i_A Methionyl-tRNA formyltr 68.5 24 0.00082 30.0 8.4 86 194-292 7-94 (318)
82 3tqq_A Methionyl-tRNA formyltr 68.1 17 0.0006 30.8 7.5 85 195-292 3-89 (314)
83 2lpm_A Two-component response 67.8 29 0.001 24.5 7.8 106 230-346 8-120 (123)
84 3gl9_A Response regulator; bet 67.7 25 0.00084 24.3 7.4 105 232-347 4-121 (122)
85 1i3c_A Response regulator RCP1 67.5 32 0.0011 24.8 8.4 107 231-346 9-135 (149)
86 3nhm_A Response regulator; pro 67.1 29 0.00099 24.2 10.0 106 231-348 5-122 (133)
87 2j48_A Two-component sensor ki 66.8 26 0.00089 23.5 8.1 105 232-347 3-117 (119)
88 3en0_A Cyanophycinase; serine 66.7 52 0.0018 27.5 10.0 109 198-316 30-154 (291)
89 1h05_A 3-dehydroquinate dehydr 66.0 14 0.00049 26.9 5.5 97 248-346 31-141 (146)
90 1fy2_A Aspartyl dipeptidase; s 65.9 49 0.0017 26.4 9.7 96 208-316 16-122 (229)
91 3to5_A CHEY homolog; alpha(5)b 65.8 34 0.0012 24.5 8.9 108 230-347 12-132 (134)
92 3u80_A 3-dehydroquinate dehydr 65.7 26 0.00088 25.8 6.8 95 250-346 35-146 (151)
93 1qkk_A DCTD, C4-dicarboxylate 64.9 27 0.00093 25.3 7.5 108 231-349 4-122 (155)
94 2uyg_A 3-dehydroquinate dehydr 64.8 33 0.0011 25.1 7.2 98 248-347 28-140 (149)
95 2nzw_A Alpha1,3-fucosyltransfe 64.6 57 0.0019 28.3 10.0 79 277-357 225-308 (371)
96 3jte_A Response regulator rece 64.2 35 0.0012 24.1 9.5 107 231-348 4-123 (143)
97 1k66_A Phytochrome response re 63.8 21 0.00071 25.5 6.6 108 231-347 7-137 (149)
98 2qr3_A Two-component system re 63.6 32 0.0011 24.2 7.5 109 231-350 4-128 (140)
99 3f6c_A Positive transcription 62.9 36 0.0012 23.7 9.0 109 231-350 2-122 (134)
100 3cg4_A Response regulator rece 62.7 37 0.0013 23.9 10.2 107 230-347 7-126 (142)
101 3kht_A Response regulator; PSI 62.6 20 0.00067 25.7 6.2 109 230-347 5-127 (144)
102 3lua_A Response regulator rece 62.6 9.5 0.00033 27.3 4.4 109 231-350 5-129 (140)
103 3kip_A 3-dehydroquinase, type 62.6 18 0.00063 27.0 5.6 83 266-348 61-158 (167)
104 1fmt_A Methionyl-tRNA FMet for 61.9 40 0.0014 28.5 8.6 39 252-292 50-90 (314)
105 3n8k_A 3-dehydroquinate dehydr 61.7 27 0.00091 26.2 6.3 96 250-347 59-168 (172)
106 2qvg_A Two component response 61.5 29 0.00098 24.6 6.9 108 231-347 8-134 (143)
107 2zay_A Response regulator rece 61.4 41 0.0014 23.9 9.7 108 230-348 8-128 (147)
108 1gqo_A Dehydroquinase; dehydra 61.3 29 0.001 25.2 6.4 97 248-346 29-139 (143)
109 1e2b_A Enzyme IIB-cellobiose; 61.3 23 0.0008 24.3 5.9 54 232-292 6-59 (106)
110 1jg7_A BGT, DNA beta-glucosylt 61.0 59 0.002 25.6 18.3 148 192-364 179-331 (351)
111 3cz5_A Two-component response 60.4 45 0.0015 24.0 7.9 110 231-350 6-127 (153)
112 2rdm_A Response regulator rece 59.0 42 0.0014 23.2 10.1 109 231-350 6-125 (132)
113 3glr_A NAD-dependent deacetyla 58.6 22 0.00074 29.7 6.2 100 264-364 175-280 (285)
114 3n53_A Response regulator rece 57.8 46 0.0016 23.4 10.6 106 231-348 4-122 (140)
115 4f3y_A DHPR, dihydrodipicolina 57.5 4.6 0.00016 33.5 2.0 43 276-318 66-108 (272)
116 1mb3_A Cell division response 57.4 43 0.0015 22.8 8.0 106 232-348 3-121 (124)
117 3lwz_A 3-dehydroquinate dehydr 57.3 29 0.00099 25.6 5.8 95 250-346 38-146 (153)
118 2qzj_A Two-component response 56.1 16 0.00056 25.9 4.7 106 231-347 5-120 (136)
119 1jbe_A Chemotaxis protein CHEY 55.9 44 0.0015 23.0 7.0 106 231-346 5-123 (128)
120 4dad_A Putative pilus assembly 55.8 18 0.00063 25.9 5.0 67 283-349 67-142 (146)
121 1uqr_A 3-dehydroquinate dehydr 55.7 27 0.00092 25.7 5.4 97 248-346 30-140 (154)
122 1xvl_A Mn transporter, MNTC pr 55.2 46 0.0016 28.2 7.9 84 278-364 89-183 (321)
123 1ydw_A AX110P-like protein; st 54.9 57 0.0019 28.1 8.7 59 251-314 42-102 (362)
124 3grc_A Sensor protein, kinase; 54.5 53 0.0018 23.0 9.9 107 231-348 7-127 (140)
125 3rfo_A Methionyl-tRNA formyltr 54.3 36 0.0012 28.8 7.0 95 195-302 5-101 (317)
126 3e9m_A Oxidoreductase, GFO/IDH 53.6 66 0.0023 27.2 8.8 67 231-314 30-98 (330)
127 3gi1_A LBP, laminin-binding pr 52.4 60 0.002 27.0 8.0 84 278-364 55-160 (286)
128 1gtz_A 3-dehydroquinate dehydr 51.2 30 0.001 25.6 5.1 97 248-346 35-146 (156)
129 2khz_A C-MYC-responsive protei 49.9 14 0.00047 27.9 3.4 36 278-314 72-110 (165)
130 3cfy_A Putative LUXO repressor 49.4 65 0.0022 22.6 7.3 105 232-347 6-121 (137)
131 3ijp_A DHPR, dihydrodipicolina 49.4 5.5 0.00019 33.3 1.2 43 276-318 81-123 (288)
132 3b2n_A Uncharacterized protein 48.4 66 0.0022 22.3 7.4 109 231-349 4-124 (133)
133 3hdg_A Uncharacterized protein 48.0 61 0.0021 22.6 6.7 107 231-348 8-125 (137)
134 3m6m_D Sensory/regulatory prot 47.7 72 0.0025 22.6 8.4 107 231-348 15-136 (143)
135 2q5c_A NTRC family transcripti 47.6 60 0.0021 25.1 6.9 103 209-347 80-182 (196)
136 3r0j_A Possible two component 47.0 81 0.0028 25.2 8.0 106 231-347 24-140 (250)
137 1toa_A Tromp-1, protein (perip 46.9 98 0.0033 26.1 8.6 84 278-364 82-176 (313)
138 4fb5_A Probable oxidoreductase 46.6 18 0.00063 31.5 4.3 99 193-313 24-124 (393)
139 2rjn_A Response regulator rece 46.0 49 0.0017 23.8 6.1 108 230-348 7-126 (154)
140 2gwr_A DNA-binding response re 45.4 1.1E+02 0.0038 24.1 8.8 107 231-348 6-122 (238)
141 1dbw_A Transcriptional regulat 45.0 71 0.0024 21.8 9.9 109 231-350 4-123 (126)
142 3sbx_A Putative uncharacterize 44.5 1.1E+02 0.0036 23.6 9.1 39 278-318 103-149 (189)
143 3cnb_A DNA-binding response re 44.4 78 0.0027 22.1 9.4 110 231-350 9-132 (143)
144 3crn_A Response regulator rece 44.2 77 0.0026 21.9 7.1 106 231-347 4-120 (132)
145 3cx3_A Lipoprotein; zinc-bindi 44.0 1.2E+02 0.0039 25.2 8.5 85 278-364 53-158 (284)
146 3dfz_A SIRC, precorrin-2 dehyd 43.8 1.2E+02 0.0041 24.1 11.8 89 210-322 41-130 (223)
147 3cg0_A Response regulator rece 43.6 80 0.0027 22.0 10.0 107 231-347 10-127 (140)
148 2qxy_A Response regulator; reg 43.4 36 0.0012 24.0 4.9 109 231-350 5-123 (142)
149 3t6k_A Response regulator rece 42.8 83 0.0029 21.9 8.9 109 231-350 5-126 (136)
150 2iz6_A Molybdenum cofactor car 42.6 4.5 0.00015 31.0 -0.4 68 279-348 103-174 (176)
151 3hdv_A Response regulator; PSI 42.6 82 0.0028 21.8 9.7 109 231-350 8-129 (136)
152 1l7b_A DNA ligase; BRCT, autos 41.9 65 0.0022 21.4 5.4 63 230-314 10-72 (92)
153 3hv2_A Response regulator/HD d 41.8 93 0.0032 22.2 7.8 108 230-348 14-133 (153)
154 3gt7_A Sensor protein; structu 41.6 95 0.0032 22.2 8.8 109 230-349 7-128 (154)
155 3i42_A Response regulator rece 41.3 82 0.0028 21.4 9.5 108 231-349 4-123 (127)
156 3l4e_A Uncharacterized peptida 41.2 31 0.001 27.1 4.3 65 248-315 44-121 (206)
157 2cok_A Poly [ADP-ribose] polym 40.8 19 0.00064 25.2 2.6 66 230-314 13-78 (113)
158 4h3v_A Oxidoreductase domain p 40.6 19 0.00066 31.3 3.4 99 194-314 6-106 (390)
159 3lzd_A DPH2; diphthamide biosy 40.6 47 0.0016 28.9 5.6 77 231-314 266-342 (378)
160 2pju_A Propionate catabolism o 40.5 1.1E+02 0.0038 24.3 7.5 102 209-347 92-193 (225)
161 3eul_A Possible nitrate/nitrit 40.3 98 0.0033 22.0 10.3 112 230-350 15-137 (152)
162 3hgm_A Universal stress protei 40.1 97 0.0033 21.9 8.0 62 251-312 73-146 (147)
163 3rqi_A Response regulator prot 40.0 41 0.0014 25.4 4.9 106 231-347 8-124 (184)
164 1dcf_A ETR1 protein; beta-alph 39.9 92 0.0031 21.6 8.7 109 231-350 8-131 (136)
165 2gkg_A Response regulator homo 39.2 87 0.003 21.1 9.0 107 231-349 6-126 (127)
166 1vl6_A Malate oxidoreductase; 38.8 1.2E+02 0.0041 26.5 7.8 30 276-305 256-285 (388)
167 2k6g_A Replication factor C su 38.7 94 0.0032 21.4 6.3 61 231-312 36-97 (109)
168 1s8n_A Putative antiterminator 38.0 1.3E+02 0.0045 22.8 8.9 109 231-349 14-132 (205)
169 3c97_A Signal transduction his 38.0 1E+02 0.0035 21.5 11.4 107 231-348 11-130 (140)
170 2jba_A Phosphate regulon trans 37.6 49 0.0017 22.6 4.7 106 232-348 4-122 (127)
171 3nvt_A 3-deoxy-D-arabino-heptu 37.5 2.1E+02 0.0071 25.0 10.9 107 197-315 144-257 (385)
172 3ujp_A Mn transporter subunit; 37.5 99 0.0034 26.0 7.1 84 278-364 75-169 (307)
173 4gqa_A NAD binding oxidoreduct 37.3 50 0.0017 29.1 5.6 101 193-314 25-127 (412)
174 2o1e_A YCDH; alpha-beta protei 37.1 1.5E+02 0.0053 24.8 8.3 85 278-364 65-171 (312)
175 3mm4_A Histidine kinase homolo 36.9 1.4E+02 0.0048 22.9 9.0 108 231-350 62-198 (206)
176 1vs1_A 3-deoxy-7-phosphoheptul 36.5 1.8E+02 0.0061 24.0 10.1 100 205-315 47-153 (276)
177 3kb6_A D-lactate dehydrogenase 36.5 1.1E+02 0.0037 26.1 7.3 42 277-318 188-234 (334)
178 1p2f_A Response regulator; DRR 36.3 56 0.0019 25.4 5.3 105 231-347 3-116 (220)
179 1vr6_A Phospho-2-dehydro-3-deo 36.3 2.1E+02 0.0071 24.6 11.5 101 204-315 114-221 (350)
180 3av3_A Phosphoribosylglycinami 36.2 1.6E+02 0.0053 23.1 8.8 92 251-345 72-175 (212)
181 4b4o_A Epimerase family protei 36.2 13 0.00043 31.1 1.4 25 1-25 5-30 (298)
182 1q1a_A HST2 protein; ternary c 35.8 85 0.0029 26.1 6.4 70 281-350 209-281 (289)
183 1yio_A Response regulatory pro 35.8 1.4E+02 0.0049 22.6 8.0 107 231-348 5-122 (208)
184 2c4w_A 3-dehydroquinate dehydr 35.7 93 0.0032 23.5 5.7 97 248-346 38-151 (176)
185 2qv0_A Protein MRKE; structura 35.1 1.1E+02 0.0039 21.3 10.2 107 231-347 10-126 (143)
186 3g8r_A Probable spore coat pol 35.1 1.6E+02 0.0054 25.3 7.9 61 250-315 80-143 (350)
187 1eiw_A Hypothetical protein MT 35.0 82 0.0028 21.8 5.2 67 279-347 34-109 (111)
188 3uuw_A Putative oxidoreductase 34.7 62 0.0021 27.0 5.5 55 251-314 43-97 (308)
189 3c3m_A Response regulator rece 34.6 1.1E+02 0.0039 21.2 8.6 109 231-350 4-125 (138)
190 1q14_A HST2 protein; histone d 34.6 1.2E+02 0.004 26.3 7.2 81 280-361 216-299 (361)
191 1zh8_A Oxidoreductase; TM0312, 34.6 92 0.0031 26.5 6.7 95 192-314 16-113 (340)
192 3lqk_A Dipicolinate synthase s 34.5 23 0.00078 27.7 2.5 25 1-25 14-41 (201)
193 2prs_A High-affinity zinc upta 34.5 67 0.0023 26.6 5.6 86 278-364 43-155 (284)
194 3cu5_A Two component transcrip 33.3 1.2E+02 0.0042 21.1 9.7 75 273-347 37-122 (141)
195 1t35_A Hypothetical protein YV 33.1 30 0.001 26.8 3.0 66 278-345 92-179 (191)
196 3v5n_A Oxidoreductase; structu 33.0 1.3E+02 0.0044 26.5 7.5 58 251-314 77-141 (417)
197 2bw0_A 10-FTHFDH, 10-formyltet 32.9 2.3E+02 0.0078 24.1 9.8 17 367-383 232-248 (329)
198 1yc5_A NAD-dependent deacetyla 32.7 1.3E+02 0.0044 24.2 6.9 79 264-345 157-242 (246)
199 1ys7_A Transcriptional regulat 32.4 1.7E+02 0.006 22.6 11.6 106 231-347 8-124 (233)
200 1dz3_A Stage 0 sporulation pro 32.2 1.2E+02 0.0041 20.7 6.1 110 231-350 3-125 (130)
201 2bln_A Protein YFBG; transfera 32.1 2.2E+02 0.0077 23.8 9.8 18 367-384 207-224 (305)
202 4had_A Probable oxidoreductase 31.9 50 0.0017 28.2 4.6 93 193-313 22-116 (350)
203 3mcu_A Dipicolinate synthase, 31.7 21 0.00071 28.1 1.9 25 1-25 12-39 (207)
204 3nv9_A Malic enzyme; rossmann 31.5 1.7E+02 0.0057 26.4 7.6 87 212-312 206-324 (487)
205 3dty_A Oxidoreductase, GFO/IDH 31.5 1.4E+02 0.005 25.9 7.6 56 251-312 52-114 (398)
206 1vli_A Spore coat polysacchari 30.7 1.3E+02 0.0045 26.2 6.8 63 248-315 101-166 (385)
207 3hh8_A Metal ABC transporter s 30.7 1.5E+02 0.0053 24.6 7.2 85 278-364 61-162 (294)
208 2wqp_A Polysialic acid capsule 30.5 1.4E+02 0.0048 25.6 6.9 63 248-315 91-156 (349)
209 2dt5_A AT-rich DNA-binding pro 30.3 77 0.0026 24.9 5.0 40 275-314 131-171 (211)
210 2vxb_A DNA repair protein RHP9 30.3 23 0.0008 28.6 2.0 20 296-315 79-98 (241)
211 1s2d_A Purine trans deoxyribos 30.2 1.7E+02 0.0059 21.9 7.4 37 278-314 76-116 (167)
212 1mvo_A PHOP response regulator 30.0 1.3E+02 0.0046 20.6 10.1 109 231-350 4-123 (136)
213 1f8y_A Nucleoside 2-deoxyribos 29.9 32 0.0011 25.7 2.5 37 278-314 73-113 (157)
214 1a04_A Nitrate/nitrite respons 29.8 1.9E+02 0.0064 22.1 8.4 108 231-348 6-125 (215)
215 3luf_A Two-component system re 29.8 2.2E+02 0.0074 22.9 11.3 107 230-347 124-244 (259)
216 1tlt_A Putative oxidoreductase 29.5 86 0.0029 26.3 5.6 55 251-314 42-96 (319)
217 2x5n_A SPRPN10, 26S proteasome 29.4 1.4E+02 0.0048 22.9 6.3 52 195-261 109-160 (192)
218 3pki_A NAD-dependent deacetyla 29.4 1.6E+02 0.0053 25.4 6.9 81 264-347 183-270 (355)
219 3qua_A Putative uncharacterize 29.3 2E+02 0.0068 22.3 8.7 39 278-318 112-158 (199)
220 1zh2_A KDP operon transcriptio 29.2 1.3E+02 0.0044 20.0 5.8 105 232-347 3-117 (121)
221 2ebu_A Replication factor C su 29.1 1.4E+02 0.0049 20.6 6.1 64 230-313 25-88 (112)
222 3kto_A Response regulator rece 29.0 1.1E+02 0.0037 21.2 5.4 107 231-348 7-126 (136)
223 3evn_A Oxidoreductase, GFO/IDH 28.9 44 0.0015 28.3 3.7 37 278-314 60-98 (329)
224 1qo0_D AMIR; binding protein, 28.8 1.1E+02 0.0037 23.1 5.7 105 231-349 13-126 (196)
225 4iao_A NAD-dependent histone d 28.7 1.1E+02 0.0038 27.6 6.1 81 263-347 369-455 (492)
226 3q9s_A DNA-binding response re 28.5 97 0.0033 24.8 5.6 107 231-348 38-154 (249)
227 1ma3_A SIR2-AF2, transcription 28.2 1.5E+02 0.0052 24.0 6.6 77 264-343 160-243 (253)
228 3ewb_X 2-isopropylmalate synth 28.1 1.8E+02 0.0063 24.1 7.2 89 245-344 147-251 (293)
229 2l2q_A PTS system, cellobiose- 27.9 1.4E+02 0.0049 20.2 6.9 95 233-347 8-104 (109)
230 1tvm_A PTS system, galactitol- 27.7 1.2E+02 0.004 20.9 5.1 55 232-292 24-78 (113)
231 3geb_A EYES absent homolog 2; 27.6 1.6E+02 0.0056 23.9 6.2 53 213-284 217-269 (274)
232 1ydn_A Hydroxymethylglutaryl-C 27.3 2.6E+02 0.009 23.0 10.1 126 208-345 118-260 (295)
233 4b4t_W RPN10, 26S proteasome r 27.1 1.6E+02 0.0056 24.1 6.5 54 194-260 108-161 (268)
234 2ywr_A Phosphoribosylglycinami 26.8 2.3E+02 0.0079 22.2 8.7 14 299-312 121-134 (216)
235 3p2y_A Alanine dehydrogenase/p 26.8 2.2E+02 0.0076 24.8 7.6 46 275-320 257-310 (381)
236 3mz0_A Inositol 2-dehydrogenas 26.7 78 0.0027 26.9 4.9 68 231-314 28-97 (344)
237 2dum_A Hypothetical protein PH 26.6 1.9E+02 0.0064 21.1 7.9 48 273-320 105-161 (170)
238 3auf_A Glycinamide ribonucleot 26.4 2.4E+02 0.0083 22.4 8.5 45 299-345 142-194 (229)
239 3dxe_A Amyloid beta A4 protein 26.1 1.2E+02 0.0042 21.9 5.0 47 193-239 8-56 (140)
240 1m2k_A Silent information regu 26.0 2.1E+02 0.0073 23.0 7.1 78 264-344 154-238 (249)
241 3k35_A NAD-dependent deacetyla 25.9 2.2E+02 0.0075 24.0 7.2 81 264-347 183-270 (318)
242 1h6d_A Precursor form of gluco 25.8 78 0.0027 28.1 4.8 59 251-314 120-181 (433)
243 3ecs_A Translation initiation 25.5 3E+02 0.01 23.1 8.6 98 194-313 122-229 (315)
244 1zym_A Enzyme I; phosphotransf 25.5 1.7E+02 0.0056 23.9 6.3 76 264-340 155-238 (258)
245 3db2_A Putative NADPH-dependen 25.2 1.3E+02 0.0044 25.7 6.0 55 251-314 41-97 (354)
246 2i2x_B MTAC, methyltransferase 24.5 2.8E+02 0.0096 22.4 9.8 49 306-356 203-251 (258)
247 3eod_A Protein HNR; response r 24.4 1.7E+02 0.0058 19.8 8.9 108 231-349 8-127 (130)
248 2ayx_A Sensor kinase protein R 24.2 2.7E+02 0.0093 22.1 8.3 42 306-347 200-246 (254)
249 3oqb_A Oxidoreductase; structu 24.0 1.3E+02 0.0045 26.0 5.9 55 251-313 57-113 (383)
250 3ffs_A Inosine-5-monophosphate 24.0 85 0.0029 27.6 4.5 64 284-347 13-89 (400)
251 1j8f_A SIRT2, sirtuin 2, isofo 24.0 2.2E+02 0.0077 24.0 7.0 100 263-363 196-318 (323)
252 2oqr_A Sensory transduction pr 23.9 1.3E+02 0.0043 23.4 5.4 107 231-348 5-121 (230)
253 1i1q_B Anthranilate synthase c 23.8 1.9E+02 0.0065 21.9 6.2 61 251-313 14-82 (192)
254 3bq9_A Predicted rossmann fold 23.8 47 0.0016 29.6 2.8 70 278-349 240-333 (460)
255 1gq2_A Malic enzyme; oxidoredu 23.4 3E+02 0.01 25.3 7.9 93 211-312 268-392 (555)
256 3u3x_A Oxidoreductase; structu 23.3 1.3E+02 0.0046 25.7 5.7 92 194-314 26-119 (361)
257 4hkt_A Inositol 2-dehydrogenas 23.3 1.6E+02 0.0055 24.7 6.2 54 251-314 39-94 (331)
258 2pln_A HP1043, response regula 23.2 1.9E+02 0.0064 19.9 8.9 42 307-348 86-133 (137)
259 3ble_A Citramalate synthase fr 23.2 2.3E+02 0.0079 24.1 7.1 121 208-345 135-268 (337)
260 2r25_B Osmosensing histidine p 23.0 1.9E+02 0.0064 19.9 9.1 108 231-348 3-127 (133)
261 3a10_A Response regulator; pho 22.9 1.7E+02 0.0057 19.3 9.7 93 250-346 14-115 (116)
262 1zco_A 2-dehydro-3-deoxyphosph 22.8 3.1E+02 0.011 22.3 11.0 106 198-315 26-138 (262)
263 3lkv_A Uncharacterized conserv 22.8 3.2E+02 0.011 22.4 17.1 186 129-347 63-259 (302)
264 2etx_A Mediator of DNA damage 22.5 1.5E+02 0.005 23.1 5.4 61 230-315 12-72 (209)
265 3ezy_A Dehydrogenase; structur 22.5 1.4E+02 0.0047 25.3 5.7 56 251-314 38-95 (344)
266 3lte_A Response regulator; str 22.5 1.9E+02 0.0064 19.6 10.0 108 231-349 7-126 (132)
267 3u7r_A NADPH-dependent FMN red 22.5 1.4E+02 0.0046 23.0 5.0 28 195-222 4-31 (190)
268 3ohs_X Trans-1,2-dihydrobenzen 22.2 83 0.0028 26.6 4.1 56 251-314 40-97 (334)
269 3eh7_A 4-hydroxybutyrate COA-t 22.1 1.2E+02 0.0043 26.9 5.3 73 286-363 357-432 (434)
270 4gmf_A Yersiniabactin biosynth 22.0 1.6E+02 0.0054 25.5 5.9 92 193-314 6-101 (372)
271 1zgz_A Torcad operon transcrip 21.9 1.8E+02 0.0062 19.3 8.9 105 232-347 4-118 (122)
272 3klo_A Transcriptional regulat 21.9 63 0.0021 25.3 3.1 67 283-349 54-130 (225)
273 1weh_A Conserved hypothetical 21.5 79 0.0027 23.8 3.4 63 278-344 92-170 (171)
274 2b4a_A BH3024; flavodoxin-like 21.5 2E+02 0.007 19.7 10.5 108 230-349 15-132 (138)
275 3f6p_A Transcriptional regulat 21.4 1.9E+02 0.0065 19.3 9.1 105 232-347 4-118 (120)
276 3kcq_A Phosphoribosylglycinami 21.4 3E+02 0.01 21.6 7.1 59 285-345 107-175 (215)
277 1o0s_A NAD-ME, NAD-dependent m 21.3 2.9E+02 0.0098 25.7 7.4 93 211-312 306-430 (605)
278 3snk_A Response regulator CHEY 21.3 48 0.0016 23.1 2.1 65 284-348 60-133 (135)
279 1srr_A SPO0F, sporulation resp 21.3 1.9E+02 0.0066 19.3 8.2 107 231-348 4-121 (124)
280 3q2i_A Dehydrogenase; rossmann 21.1 3.8E+02 0.013 22.7 8.8 93 193-314 12-106 (354)
281 3u7q_A Nitrogenase molybdenum- 20.9 2E+02 0.0068 26.1 6.5 101 206-314 192-298 (492)
282 2a9f_A Putative malic enzyme ( 20.9 1.5E+02 0.0051 26.0 5.3 67 230-305 188-280 (398)
283 4e4r_A Phosphate acetyltransfe 20.8 1.7E+02 0.006 24.8 5.7 55 194-270 19-74 (331)
284 3ec7_A Putative dehydrogenase; 20.8 1.1E+02 0.0037 26.2 4.6 68 231-314 49-118 (357)
285 1ydh_A AT5G11950; structural g 20.8 68 0.0023 25.4 3.0 66 278-345 100-187 (216)
286 2ka5_A Putative anti-sigma fac 20.7 1.6E+02 0.0054 20.4 4.8 58 195-270 54-113 (125)
287 2ftp_A Hydroxymethylglutaryl-C 20.6 3.7E+02 0.013 22.3 10.0 128 207-345 121-264 (302)
288 1kgs_A DRRD, DNA binding respo 20.5 2.9E+02 0.0099 21.1 8.2 106 231-347 3-119 (225)
289 2lnd_A De novo designed protei 20.2 1.2E+02 0.0041 19.2 3.4 42 306-347 50-100 (112)
290 2nx2_A Hypothetical protein YP 20.1 2.9E+02 0.0099 20.9 8.1 117 196-324 46-178 (181)
No 1
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=4.3e-47 Score=349.96 Aligned_cols=369 Identities=17% Similarity=0.196 Sum_probs=273.7
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCc--ccc--ccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHC--FKE--TKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~--~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
.||+++++.++ ++|.++||+|+++ ... ... ....++.+..++...... ... ..+..++..+.......+++
T Consensus 41 ~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 118 (438)
T 3c48_A 41 SGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEG-LSK-EELPTQLAAFTGGMLSFTRR 118 (438)
T ss_dssp --CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEEETTEEEEEECCSCSSS-CCG-GGGGGGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccCCeEEEEecCCCccc-cch-hHHHHHHHHHHHHHHHHHHh
Confidence 49999999999 9999999999988 211 111 122455665553211110 000 01111111111111111133
Q ss_pred --cCCCEEEEcccccchh---HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 75 --EKPDLVFCDLVSICIP---ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 75 --~~~Dvi~~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
.+||+||+|.+..... +.+..++|+|+++|+......................+++.+++.+|.++++|+..++.
T Consensus 119 ~~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 198 (438)
T 3c48_A 119 EKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVDNADVLAVNTQEEMQD 198 (438)
T ss_dssp HTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCHHHHSCC----CCHHHHHHHHHHHHHHHHCSEEEESSHHHHHH
T ss_pred ccCCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCCcccccccccccCCcchHHHHHHHHHHHhcCCEEEEcCHHHHHH
Confidence 3599999998543332 23334599999999864321110000000001122356678899999999999999999
Q ss_pred HHHHhccCCCCceeecCCCCCCCCCCCCCccc---hhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccc
Q psy12587 150 VQATFRSLDHKCLDILYPSVYTEGLEKTTPEP---IENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDE 226 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~ 226 (390)
+.+.++ .+..++.++|||+|.+.+.+..... .++.++ ...+.++|+++|++.+.||++.+++|+..+.++.|+
T Consensus 199 ~~~~~g-~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~--~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~- 274 (438)
T 3c48_A 199 LMHHYD-ADPDRISVVSPGADVELYSPGNDRATERSRRELG--IPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPD- 274 (438)
T ss_dssp HHHHHC-CCGGGEEECCCCCCTTTSCCC----CHHHHHHTT--CCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHhC-CChhheEEecCCccccccCCcccchhhhhHHhcC--CCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCC-
Confidence 988665 3367899999999998877654332 555554 234778999999999999999999999999988651
Q ss_pred cccceEEEEEcC----CCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHh
Q psy12587 227 MKTHVKLVVAGG----YDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIE 302 (390)
Q Consensus 227 ~~~~~~l~i~G~----~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~E 302 (390)
.+++|+|+|+ ++.. +.++++++++++.++|.|+|+++++++.++|+.||++++||..|++|++++|
T Consensus 275 --~~~~l~i~G~~~~~g~~~--------~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~E 344 (438)
T 3c48_A 275 --RNLRVIICGGPSGPNATP--------DTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAME 344 (438)
T ss_dssp --CSEEEEEECCBC--------------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHH
T ss_pred --cceEEEEEeCCCCCCcHH--------HHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHH
Confidence 1399999998 4433 8899999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy12587 303 AMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 303 a~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
||+||+|||+++.++..|++.++.+|+++++ |+++++++|.+++++++ .++++++++++.+.+ |+|+.+++++.++|
T Consensus 345 ama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~-~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~ 422 (438)
T 3c48_A 345 AQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDE-TRIRMGEDAVEHART-FSWAATAAQLSSLY 422 (438)
T ss_dssp HHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHh-CCHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 99999999999999998 999999999999966 99999999999999
Q ss_pred Hhhhhhc
Q psy12587 382 NNMLDKK 388 (390)
Q Consensus 382 ~~~~~~~ 388 (390)
+++++++
T Consensus 423 ~~~~~~~ 429 (438)
T 3c48_A 423 NDAIANE 429 (438)
T ss_dssp HHHHHTC
T ss_pred HHHhhhc
Confidence 9998764
No 2
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=6.2e-47 Score=349.03 Aligned_cols=367 Identities=17% Similarity=0.211 Sum_probs=278.7
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecC---Cccccc-------------------cCCCcceEEecccc-cc-ccch-h--
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHD---HCFKET-------------------KDGTLPVKVIGDWL-PR-NIFG-K-- 53 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~---~~~~~~-------------------~~~~~~i~~~~~~~-~~-~~~~-~-- 53 (390)
.||+++++.+| ++|.++||+|+++. ...... ...++.+..++... .. ..+. .
T Consensus 17 ~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~ 96 (439)
T 3fro_A 17 VGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWD 96 (439)
T ss_dssp SSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEEESGGGGCSSTTCSHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEecchhccccccccCCcc
Confidence 59999999999 99999999999981 111100 33556666654311 01 1111 1
Q ss_pred --hHHHHHHHHHHHHHHHHHHhh-cCCCEEEEcccccchhHH---HhhcccEEEEeecCCccccchhhhhhhhc----cc
Q psy12587 54 --FYALCMYLRMIVIALYVAWYS-EKPDLVFCDLVSICIPIL---QAKQFKVLFYCHYPDQLLSKQGSFLKSIY----RF 123 (390)
Q Consensus 54 --~~~~~~~~~~~~~~~~~~~~~-~~~Dvi~~~~~~~~~~~~---~~~~~~~v~~~h~~~~~~~~~~~~~~~~~----~~ 123 (390)
...+..+...........+.+ .+||+||+|++...+... +..++|+|+++|+................ ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ 176 (439)
T 3fro_A 97 GLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPY 176 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCS
T ss_pred hhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhccCCCEEEEecccccccCchHHhCcccccccccc
Confidence 111111212211111111112 699999999876544333 33459999999987643222221111111 22
Q ss_pred chhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCC--------CccchhhhcCCCCCCCCe
Q psy12587 124 PLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKT--------TPEPIENVLNPLPGKEDI 195 (390)
Q Consensus 124 ~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~ 195 (390)
....+++.+++.+|.++++|+..++.....++. +..++.++|||+|.+.+.+. ....+++.++ + .++ +
T Consensus 177 ~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~-~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~ 252 (439)
T 3fro_A 177 PDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRN-FEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFG-M-DEG-V 252 (439)
T ss_dssp SEECHHHHHHHHCSEEEESCHHHHHHTHHHHGG-GTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHT-C-CSC-E
T ss_pred ceeeHhhhhhhhccEEEecCHHHHHHHhhhhhh-cCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcC-C-CCC-c
Confidence 223677888999999999999999886554432 37899999999999888764 1233444554 2 334 9
Q ss_pred EEEEeeccc-ccCCHHHHHHHHHHHHhhc--ccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 196 VFLSINRYE-RKKNLELAIYSLNSLRSRL--SDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 196 ~i~~~g~~~-~~K~~~~ll~a~~~l~~~~--~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
+|+++|++. +.||++.+++|++.+.++. ++ ++|+|+|+++. .|.+.+++++++++ +.+.+.|++
T Consensus 253 ~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~-----~~l~i~G~g~~------~~~~~l~~~~~~~~--~~~~~~g~~ 319 (439)
T 3fro_A 253 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQE-----MRFIIIGKGDP------ELEGWARSLEEKHG--NVKVITEML 319 (439)
T ss_dssp EEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGG-----EEEEEECCCCH------HHHHHHHHHHHHCT--TEEEECSCC
T ss_pred EEEEEcccccccccHHHHHHHHHHHHhcccCCC-----eEEEEEcCCCh------hHHHHHHHHHhhcC--CEEEEcCCC
Confidence 999999999 9999999999999999876 64 99999998864 56688999999987 778899999
Q ss_pred ChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc-CCh
Q psy12587 273 SDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD-NDG 350 (390)
Q Consensus 273 ~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~-~~~ 350 (390)
+++++..+|+.||++++||..|++|++++|||+||+|||+|+.++..|++.++ +|+++++ |+++++++|.++++ +++
T Consensus 320 ~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~~~~~ 398 (439)
T 3fro_A 320 SREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALELSRS 398 (439)
T ss_dssp CHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999999999999999999999887 9999999 99999999999999 888
Q ss_pred hHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 351 NIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
.++++++++++.+ ++|+|+.+++++.++|++++++.
T Consensus 399 -~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 399 -DLSKFRENCKKRA-MSFSWEKSAERYVKAYTGSIDRA 434 (439)
T ss_dssp -TTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHTCSCCB
T ss_pred -HHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999 78999999999999999998765
No 3
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=3.1e-46 Score=339.35 Aligned_cols=352 Identities=16% Similarity=0.221 Sum_probs=267.3
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCcc--c-cccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCF--K-ETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EK 76 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~--~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (390)
.||+++++.+| ++|.++||+|+++.... . .....++.+..+.... ...+........... ....+++ .+
T Consensus 26 ~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~-----~l~~~l~~~~ 99 (394)
T 2jjm_A 26 VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLNKVYPNIYFHEVTVNQ-YSVFQYPPYDLALAS-----KMAEVAQREN 99 (394)
T ss_dssp -CHHHHHHHHHHHHHHHTTCEEEEECSSCC----CCCTTEEEECCCCC-----CCSCCHHHHHHH-----HHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcccccCCceEEEeccccc-ccccccccccHHHHH-----HHHHHHHHcC
Confidence 59999999999 99999999999882211 1 1122333333332110 000110000001111 1112445 89
Q ss_pred CCEEEEcccccch----hHHHhh--cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 77 PDLVFCDLVSICI----PILQAK--QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 77 ~Dvi~~~~~~~~~----~~~~~~--~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
||+||+|+..... ...+.. ++|+|+++|+.+..... .......+++.+++.+|.++++|+..++.+
T Consensus 100 ~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~--------~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 171 (394)
T 2jjm_A 100 LDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLG--------SDPSLNNLIRFGIEQSDVVTAVSHSLINET 171 (394)
T ss_dssp CSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTT--------TCTTTHHHHHHHHHHSSEEEESCHHHHHHH
T ss_pred CCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccC--------CCHHHHHHHHHHHhhCCEEEECCHHHHHHH
Confidence 9999999753221 122232 38999999974321110 112234567788899999999999999999
Q ss_pred HHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccc
Q psy12587 151 QATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTH 230 (390)
Q Consensus 151 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~ 230 (390)
.+.++. ..++.++|||+|.+.+.+......++.++ ...+.++++++|++.+.||++.+++|++.+.++ + +
T Consensus 172 ~~~~~~--~~~~~vi~ngv~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~-----~ 241 (394)
T 2jjm_A 172 HELVKP--NKDIQTVYNFIDERVYFKRDMTQLKKEYG--ISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-V-----D 241 (394)
T ss_dssp HHHTCC--SSCEEECCCCCCTTTCCCCCCHHHHHHTT--CC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-S-----C
T ss_pred HHhhCC--cccEEEecCCccHHhcCCcchHHHHHHcC--CCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-C-----C
Confidence 987652 47999999999998887665555555554 223678899999999999999999999999876 3 3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCE
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPV 310 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pv 310 (390)
++|+|+|+++.. ++++++++++++.++|.++|+. +++.++|+.||++++||..|++|++++|||+||+||
T Consensus 242 ~~l~i~G~g~~~--------~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pv 311 (394)
T 2jjm_A 242 AKLLLVGDGPEF--------CTILQLVKNLHIEDRVLFLGKQ--DNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPC 311 (394)
T ss_dssp CEEEEECCCTTH--------HHHHHHHHTTTCGGGBCCCBSC--SCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCE
T ss_pred CEEEEECCchHH--------HHHHHHHHHcCCCCeEEEeCch--hhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCE
Confidence 899999988764 8899999999999999999974 556899999999999999999999999999999999
Q ss_pred EEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 311 IAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 311 i~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
|+++.++..|++.++.+|+++++ |+++++++|.+++++++ .++++++++++.+.++|+|+.+++++.++|+++++++
T Consensus 312 I~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 389 (394)
T 2jjm_A 312 IGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEE-LHRNMGERARESVYEQFRSEKIVSQYETIYYDVLRDD 389 (394)
T ss_dssp EEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC---
T ss_pred EEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999998 99999999999999998 9999999999999899999999999999999998764
No 4
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=5.7e-47 Score=354.58 Aligned_cols=379 Identities=17% Similarity=0.203 Sum_probs=278.9
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCcc---cc------cc--CCCcceEEeccccccccchhhHHHHHHHHHHHHH
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHCF---KE------TK--DGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIA 67 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~~---~~------~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (390)
.||+++++.++ ++|.++||+|+++ .... .. .. ..++.+..++..... .... ..+..++..+...
T Consensus 32 ~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~-~~~~-~~~~~~~~~~~~~ 109 (499)
T 2r60_A 32 FGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDK-FLPK-EELWPYLHEYVNK 109 (499)
T ss_dssp BSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEECCSCSS-CCCG-GGCGGGHHHHHHH
T ss_pred CCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEecCCCcC-CcCH-HHHHHHHHHHHHH
Confidence 59999999999 9999999999988 2111 11 11 345666665422111 0000 0011111111111
Q ss_pred HHHHHhh--cCCCEEEEcccccchh---HHHhhcccEEEEeecCCccccchh-------hhhhhhccc-chhhHHHHHhc
Q psy12587 68 LYVAWYS--EKPDLVFCDLVSICIP---ILQAKQFKVLFYCHYPDQLLSKQG-------SFLKSIYRF-PLNKLEEWTTC 134 (390)
Q Consensus 68 ~~~~~~~--~~~Dvi~~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~ 134 (390)
+...+.+ .+||+||+|.+...+. +.+..++|+|+++|+......... ......++. ....+++.+++
T Consensus 110 l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (499)
T 2r60_A 110 IINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMS 189 (499)
T ss_dssp HHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCCCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEcCCcchHHHHHHHHhcCCcEEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHh
Confidence 1111222 3899999998644333 233445999999998643211100 001111111 12345678899
Q ss_pred CcceEEEccHhHHHHHHHH--hccC----CCCceeecCCCCCCCCCCCCCc----cchhhhcCC----CCCCCCeEEEEe
Q psy12587 135 KADKIVVNSEFTKSVVQAT--FRSL----DHKCLDILYPSVYTEGLEKTTP----EPIENVLNP----LPGKEDIVFLSI 200 (390)
Q Consensus 135 ~ad~ii~~s~~~~~~~~~~--~~~~----~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~----l~~~~~~~i~~~ 200 (390)
.+|.++++|+..++.+.+. ++.. +..++.++|||+|.+.+.+... ..+++.++. ++ .+.++|+++
T Consensus 190 ~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~i~~v 268 (499)
T 2r60_A 190 YADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSER-MELPAIIAS 268 (499)
T ss_dssp HCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGG-TTSCEEEEC
T ss_pred cCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChhhcCccchhhhHHHHHHHhcccccccC-CCCcEEEEe
Confidence 9999999999999988876 5522 3679999999999988876543 223332210 02 256789999
Q ss_pred ecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCC------C-cchhHHHHHHHHHHHHcCCCCcEEEecCCC
Q psy12587 201 NRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPH------N-IENVEYYKELGVLVKKLKLSDNVLFLTSPS 273 (390)
Q Consensus 201 g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~------~-~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~ 273 (390)
|++.+.||++.+++|+..+.++.++ .+.++|+|+.+.. . ..+..|.++++++++++++.++|.|+|+++
T Consensus 269 Grl~~~Kg~~~li~a~~~l~~~~~~----~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~ 344 (499)
T 2r60_A 269 SRLDQKKNHYGLVEAYVQNKELQDK----ANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNS 344 (499)
T ss_dssp SCCCGGGCHHHHHHHHHTCHHHHHH----CEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCS
T ss_pred ecCccccCHHHHHHHHHHHHHhCCC----ceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCC
Confidence 9999999999999999999877554 4689999983221 0 113345799999999999999999999999
Q ss_pred hHHHHHHHHhc----ceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 274 DAAKISLFKFC----HCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 274 ~~e~~~~~~~a----dv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
++++..+|+.| |++|+||..|+||++++|||+||+|||+|+.++..|++.++.+|+++++ |+++++++|.+++++
T Consensus 345 ~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~ 424 (499)
T 2r60_A 345 QQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFES 424 (499)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhC
Confidence 99999999999 9999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 349 DGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
++ .++++++++++.+.++|+|+.+++++.++|+++++++
T Consensus 425 ~~-~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~ 463 (499)
T 2r60_A 425 EE-TWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRK 463 (499)
T ss_dssp HH-HHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC-
T ss_pred HH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Confidence 98 9999999999999878999999999999999998764
No 5
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=2.3e-45 Score=333.77 Aligned_cols=344 Identities=17% Similarity=0.150 Sum_probs=269.5
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCccc----cccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHCFK----ETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
.||+++++.++ ++| +||+|+++ ..... .....++.+..++....... ... ... ...+++
T Consensus 18 ~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~-----l~~~~~ 83 (394)
T 3okp_A 18 IGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSVMLPT---PTT----AHA-----MAEIIR 83 (394)
T ss_dssp CSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEESSSSCCSC---HHH----HHH-----HHHHHH
T ss_pred cchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEccccccccc---hhh----HHH-----HHHHHH
Confidence 59999999999 999 69999988 22211 11234456665543221111 111 111 112444
Q ss_pred -cCCCEEEEcccccchhH---HHhhcc-cEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHH
Q psy12587 75 -EKPDLVFCDLVSICIPI---LQAKQF-KVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSV 149 (390)
Q Consensus 75 -~~~Dvi~~~~~~~~~~~---~~~~~~-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 149 (390)
.+||+||++.......+ ++..++ ++|+++|+.+... ........+.+.+++.+|.++++|+..++.
T Consensus 84 ~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---------~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 154 (394)
T 3okp_A 84 EREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGW---------SMLPGSRQSLRKIGTEVDVLTYISQYTLRR 154 (394)
T ss_dssp HTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHH---------TTSHHHHHHHHHHHHHCSEEEESCHHHHHH
T ss_pred hcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhh---------hhcchhhHHHHHHHHhCCEEEEcCHHHHHH
Confidence 89999999885433222 233345 4888999753311 112233456677889999999999999999
Q ss_pred HHHHhccCCCCceeecCCCCCCCCCCCCCc---cchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccc
Q psy12587 150 VQATFRSLDHKCLDILYPSVYTEGLEKTTP---EPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDE 226 (390)
Q Consensus 150 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~ 226 (390)
+.+.++ . ..++.++|||+|.+.+.+... ...++.++ ..++.++|+++|++.+.||++.++++++.+.++.++
T Consensus 155 ~~~~~~-~-~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~- 229 (394)
T 3okp_A 155 FKSAFG-S-HPTFEHLPSGVDVKRFTPATPEDKSATRKKLG--FTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPD- 229 (394)
T ss_dssp HHHHHC-S-SSEEEECCCCBCTTTSCCCCHHHHHHHHHHTT--CCTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTT-
T ss_pred HHHhcC-C-CCCeEEecCCcCHHHcCCCCchhhHHHHHhcC--CCcCceEEEEEeccccccCHHHHHHHHHHHHhhCCC-
Confidence 999865 2 579999999999988876332 33445554 234668899999999999999999999999988875
Q ss_pred cccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCC-------CCCCcc
Q psy12587 227 MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN-------EHFGIV 299 (390)
Q Consensus 227 ~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~-------e~~~~~ 299 (390)
++|+|+|+++.. +.+++++ .++.++|.++|+++++++.++|+.||++++||.. |++|++
T Consensus 230 ----~~l~i~G~g~~~--------~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~ 295 (394)
T 3okp_A 230 ----AQLLIVGSGRYE--------STLRRLA--TDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIV 295 (394)
T ss_dssp ----CEEEEECCCTTH--------HHHHHHT--GGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHH
T ss_pred ----eEEEEEcCchHH--------HHHHHHH--hcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcH
Confidence 999999998764 7777777 5556899999999999999999999999999999 999999
Q ss_pred HHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 300 PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 300 ~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
++|||++|+|||+++.++..|++.++ +|+++++ |+++++++|.+++++++ .++++++++++.+.++|+|+.+++++.
T Consensus 296 ~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~ 373 (394)
T 3okp_A 296 YLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDPI-RRAAMGAAGRAHVEAEWSWEIMGERLT 373 (394)
T ss_dssp HHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999998 9999999 99999999999999998 999999999999988899999999999
Q ss_pred HHHHhhhhhcC
Q psy12587 379 TIVNNMLDKKT 389 (390)
Q Consensus 379 ~~~~~~~~~~~ 389 (390)
++|+++..+++
T Consensus 374 ~~~~~~~r~~~ 384 (394)
T 3okp_A 374 NILQSEPRKLA 384 (394)
T ss_dssp HHHHSCCC---
T ss_pred HHHHHhccCcc
Confidence 99999876543
No 6
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=4.5e-45 Score=350.29 Aligned_cols=377 Identities=18% Similarity=0.214 Sum_probs=270.2
Q ss_pred CCcchhhhHh--------h-HhhhhcCCcee----ec----CCc----c---ccccC--CCcceEEecccccc---ccch
Q psy12587 2 LGATARLTIT--------A-TAWGATGPRTT----AH----DHC----F---KETKD--GTLPVKVIGDWLPR---NIFG 52 (390)
Q Consensus 2 ~GG~~~~~~~--------l-~~L~~~G~~V~----~~----~~~----~---~~~~~--~~~~i~~~~~~~~~---~~~~ 52 (390)
+||...++.+ | ++|+++||+|+ ++ ... + .+... .++.|.+++..... ..+.
T Consensus 301 tGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l 380 (816)
T 3s28_A 301 TGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWI 380 (816)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCC
T ss_pred CCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcceeecCcCCeEEEEecCCCccccccccc
Confidence 6999999985 6 67778999986 55 111 0 11111 35666666422110 0001
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh---cCCCEEEEcccccchhHH---HhhcccEEEEeecCCccccchhhh----hhhhcc
Q psy12587 53 KFYALCMYLRMIVIALYVAWYS---EKPDLVFCDLVSICIPIL---QAKQFKVLFYCHYPDQLLSKQGSF----LKSIYR 122 (390)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~---~~~Dvi~~~~~~~~~~~~---~~~~~~~v~~~h~~~~~~~~~~~~----~~~~~~ 122 (390)
....++.++..+.......+.+ .+|||||+|.+..++.+. +..++|+|++.|+........... ....+.
T Consensus 381 ~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~ 460 (816)
T 3s28_A 381 SRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYH 460 (816)
T ss_dssp CTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHH
Confidence 1112223333332121222222 589999999865554433 344599999999754322111110 111111
Q ss_pred cch-hhHHHHHhcCcceEEEccHhHHHHHHHH---hcc-----------------CCCCceeecCCCCCCCCCCCCCccc
Q psy12587 123 FPL-NKLEEWTTCKADKIVVNSEFTKSVVQAT---FRS-----------------LDHKCLDILYPSVYTEGLEKTTPEP 181 (390)
Q Consensus 123 ~~~-~~~~~~~~~~ad~ii~~s~~~~~~~~~~---~~~-----------------~~~~~~~vi~~~~~~~~~~~~~~~~ 181 (390)
... ...++.+++.||.|+++|+..++.+.+. |.. ....++.+||||+|.+.|.+.....
T Consensus 461 ~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~ 540 (816)
T 3s28_A 461 FSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEK 540 (816)
T ss_dssp HHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTT
T ss_pred HHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhh
Confidence 111 1236678999999999999988753221 111 0012899999999999887654221
Q ss_pred -------------------hhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCC-
Q psy12587 182 -------------------IENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDP- 241 (390)
Q Consensus 182 -------------------~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~- 241 (390)
.++.++.+...+.++|+++||+.+.||++.+++|+..+.+..++ ++|+|+|+++.
T Consensus 541 ~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~-----v~LvIvG~g~~~ 615 (816)
T 3s28_A 541 RRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLREL-----ANLVVVGGDRRK 615 (816)
T ss_dssp TCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHH-----CEEEEECCCTTS
T ss_pred hhhhhccccccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCC-----eEEEEEeCCCcc
Confidence 12223211245778999999999999999999999999887775 99999999873
Q ss_pred --CCcchhHHHHHHHHHHHHcCCCCcEEEecCCC----hHHHHHHHH-hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 242 --HNIENVEYYKELGVLVKKLKLSDNVLFLTSPS----DAAKISLFK-FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 242 --~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~----~~e~~~~~~-~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
...++..+.++++++++++++.++|.|+|+++ .+++..+|+ .+|++++||..|+||++++|||+||+|||+|+
T Consensus 616 ~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd 695 (816)
T 3s28_A 616 ESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATC 695 (816)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEES
T ss_pred cccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeC
Confidence 12233457789999999999999999999655 488899998 57999999999999999999999999999999
Q ss_pred CCCcccceecCcceeeecC-CHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhh
Q psy12587 315 SGGPKESVVDGRTGFLCES-NEEAFAKAMKKIV----DNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNM 384 (390)
Q Consensus 315 ~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
.||..|++.++.+|+++++ |+++++++|.+++ +|++ .++++++++++.+.++|||+.+++++.++|+..
T Consensus 696 ~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~-~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 696 KGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPS-HWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp SBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999997776 8999 999999999999989999999999999999865
No 7
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1.3e-43 Score=330.78 Aligned_cols=293 Identities=14% Similarity=0.169 Sum_probs=230.2
Q ss_pred cCCCEEEEcccccchhH---HHh--hcccEEEEeecCCccccchhhh------hhhhc-----cc-chhhHHHHHhcCcc
Q psy12587 75 EKPDLVFCDLVSICIPI---LQA--KQFKVLFYCHYPDQLLSKQGSF------LKSIY-----RF-PLNKLEEWTTCKAD 137 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~---~~~--~~~~~v~~~h~~~~~~~~~~~~------~~~~~-----~~-~~~~~~~~~~~~ad 137 (390)
.+||+||+|++...+.. .+. .++|+|+++|+........... ....+ .. ....+++.+++.+|
T Consensus 129 ~~~DiIh~~~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 208 (485)
T 1rzu_A 129 WRPDMVHAHDWQAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTAT 208 (485)
T ss_dssp CCCSEEEEEHHHHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCS
T ss_pred CCCCEEEecccchhHHHHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcC
Confidence 79999999985443322 222 4599999999864321110000 00000 00 01256788899999
Q ss_pred eEEEccHhHHHHHHHH-hc-------cCCCCceeecCCCCCCCCCCCCCc-------------------cchhhhcCCCC
Q psy12587 138 KIVVNSEFTKSVVQAT-FR-------SLDHKCLDILYPSVYTEGLEKTTP-------------------EPIENVLNPLP 190 (390)
Q Consensus 138 ~ii~~s~~~~~~~~~~-~~-------~~~~~~~~vi~~~~~~~~~~~~~~-------------------~~~~~~~~~l~ 190 (390)
.++++|+..++.+.+. ++ ..+..++.+||||+|.+.+.+... ..+++.++ ++
T Consensus 209 ~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~ 287 (485)
T 1rzu_A 209 ALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFR-ID 287 (485)
T ss_dssp EEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHT-CC
T ss_pred EEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcC-CC
Confidence 9999999999988764 32 023579999999999988776432 23444444 34
Q ss_pred CCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEE-Ee
Q psy12587 191 GKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVL-FL 269 (390)
Q Consensus 191 ~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~-~~ 269 (390)
.++.++|+++||+.+.||++.+++|+..+.+. +++|+|+|+++. .+.+.+++++++++ ++|. +.
T Consensus 288 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~-------~~~l~ivG~g~~------~~~~~l~~~~~~~~--~~v~~~~ 352 (485)
T 1rzu_A 288 DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSL-------GGRLVVLGAGDV------ALEGALLAAASRHH--GRVGVAI 352 (485)
T ss_dssp CSSSCEEEEESCBSTTTTHHHHHTTHHHHHHT-------TCEEEEEECBCH------HHHHHHHHHHHHTT--TTEEEEE
T ss_pred CCCCeEEEEEccCccccCHHHHHHHHHHHHhc-------CceEEEEeCCch------HHHHHHHHHHHhCC--CcEEEec
Confidence 43366899999999999999999999999764 399999999853 34588899998885 6787 78
Q ss_pred cCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecC---------cceeeecC-CHHHHH
Q psy12587 270 TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDG---------RTGFLCES-NEEAFA 339 (390)
Q Consensus 270 g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~---------~~g~~~~~-~~~~l~ 339 (390)
|+ +++++..+|+.||++++||..|+||++++|||+||+|||+|+.+|.+|++.++ .+|+++++ |+++++
T Consensus 353 g~-~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la 431 (485)
T 1rzu_A 353 GY-NEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLK 431 (485)
T ss_dssp SC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHH
T ss_pred CC-CHHHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHH
Confidence 87 78888899999999999999999999999999999999999999999999998 89999999 999999
Q ss_pred HHHHHHh---cCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 340 KAMKKIV---DNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 340 ~~i~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
++|.+++ ++++ .++++++++++ ++|||+.+++++.++|++++.++
T Consensus 432 ~~i~~ll~~~~~~~-~~~~~~~~~~~---~~fs~~~~~~~~~~~y~~~~~~~ 479 (485)
T 1rzu_A 432 QAIRRTVRYYHDPK-LWTQMQKLGMK---SDVSWEKSAGLYAALYSQLISKG 479 (485)
T ss_dssp HHHHHHHHHHTCHH-HHHHHHHHHHT---CCCBHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCCHH-HHHHHHHHHHH---HhCChHHHHHHHHHHHHHhhCCC
Confidence 9999999 7887 89999988864 79999999999999999998754
No 8
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=9.7e-43 Score=324.92 Aligned_cols=293 Identities=15% Similarity=0.135 Sum_probs=228.5
Q ss_pred cCCCEEEEcccccchhHHH----hhcccEEEEeecCCccccchhhh------hhhhc------ccchhhHHHHHhcCcce
Q psy12587 75 EKPDLVFCDLVSICIPILQ----AKQFKVLFYCHYPDQLLSKQGSF------LKSIY------RFPLNKLEEWTTCKADK 138 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~----~~~~~~v~~~h~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~ad~ 138 (390)
.+||+||+|++...+.... ..++|+|+++|+........... ....+ ......+++.+++.+|.
T Consensus 128 ~~~Divh~~~~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 207 (485)
T 2qzs_A 128 WRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADH 207 (485)
T ss_dssp CCCSEEEEETGGGTTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSE
T ss_pred CCCCEEEeeccchhHHHHHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCe
Confidence 5899999998654443322 23499999999864321110000 00000 00123567788899999
Q ss_pred EEEccHhHHHHHHHH-hccC-------CC--CceeecCCCCCCCCCCCCCc-------------------cchhhhcCCC
Q psy12587 139 IVVNSEFTKSVVQAT-FRSL-------DH--KCLDILYPSVYTEGLEKTTP-------------------EPIENVLNPL 189 (390)
Q Consensus 139 ii~~s~~~~~~~~~~-~~~~-------~~--~~~~vi~~~~~~~~~~~~~~-------------------~~~~~~~~~l 189 (390)
++++|+..++.+.+. ++.. +. .++.+||||+|.+.+.+... ..+++.++ +
T Consensus 208 vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~ 286 (485)
T 2qzs_A 208 ITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMG-L 286 (485)
T ss_dssp EEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHT-C
T ss_pred EEecCHHHHHHHhccccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcC-C
Confidence 999999999988764 3310 12 68999999999988776432 23444444 2
Q ss_pred CC-CCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEE-
Q psy12587 190 PG-KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVL- 267 (390)
Q Consensus 190 ~~-~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~- 267 (390)
+. .+.++|+++||+.+.||++.+++|++.+.+. +++|+|+|+++. .+.+.+++++++++ ++|.
T Consensus 287 ~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~-------~~~l~ivG~g~~------~~~~~l~~~~~~~~--~~v~~ 351 (485)
T 2qzs_A 287 KVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQ-------GGQLALLGAGDP------VLQEGFLAAAAEYP--GQVGV 351 (485)
T ss_dssp CCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHHT-------TCEEEEEEEECH------HHHHHHHHHHHHST--TTEEE
T ss_pred CCCCCCeEEEEeccCccccCHHHHHHHHHHHhhC-------CcEEEEEeCCch------HHHHHHHHHHHhCC--CcEEE
Confidence 32 2568899999999999999999999999763 399999998753 34588899998885 6786
Q ss_pred EecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecC---------cceeeecC-CHHH
Q psy12587 268 FLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDG---------RTGFLCES-NEEA 337 (390)
Q Consensus 268 ~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~---------~~g~~~~~-~~~~ 337 (390)
+.|+ +++++..+|+.||++|+||..|+||++++|||+||+|||+|+.+|.+|++.++ .+|+++++ |+++
T Consensus 352 ~~g~-~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~ 430 (485)
T 2qzs_A 352 QIGY-HEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWS 430 (485)
T ss_dssp EESC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHH
T ss_pred eCCC-CHHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHH
Confidence 7887 78888999999999999999999999999999999999999999999999998 89999999 9999
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 338 FAKAMKKIV---DNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 338 l~~~i~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
++++|.+++ ++++ .++++++++++ ++|||+.+++++.++|++++...
T Consensus 431 la~~i~~ll~~~~~~~-~~~~~~~~~~~---~~fs~~~~~~~~~~ly~~~~~~~ 480 (485)
T 2qzs_A 431 LLRAIRRAFVLWSRPS-LWRFVQRQAMA---MDFSWQVAAKSYRELYYRLKLEH 480 (485)
T ss_dssp HHHHHHHHHHHHTSHH-HHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHHh---hcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999 6887 89999988864 79999999999999999987643
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=9.6e-44 Score=320.85 Aligned_cols=347 Identities=15% Similarity=0.141 Sum_probs=259.3
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCCE
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPDL 79 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv 79 (390)
.||+++++.++ ++|.++||+|+++..........++.+..++... .........+... ...+++ .+||+
T Consensus 13 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~-----l~~~i~~~~~Dv 83 (374)
T 2iw1_A 13 FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKS----HTNHGRNAEYYAW-----VQNHLKEHPADR 83 (374)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCCTTCEEEECCCCC----SSHHHHHHHHHHH-----HHHHHHHSCCSE
T ss_pred CcchhhHHHHHHHHHHhCCCeEEEEecCCCCCCCCCcEEEEEccCc----ccchhhHHHHHHH-----HHHHHhccCCCE
Confidence 49999999999 9999999999998222111222356666553211 1111111111111 113445 89999
Q ss_pred EEEcccccchhHHHhh---cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhc--CcceEEEccHhHHHHHHHHh
Q psy12587 80 VFCDLVSICIPILQAK---QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTC--KADKIVVNSEFTKSVVQATF 154 (390)
Q Consensus 80 i~~~~~~~~~~~~~~~---~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ad~ii~~s~~~~~~~~~~~ 154 (390)
||++.......+.... ..+.+.+.|+... .... .......+++..+. .+|.++++|+..++.+.+.+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~ 155 (374)
T 2iw1_A 84 VVGFNKMPGLDVYFAADVCYAEKVAQEKGFLY------RLTS--RYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHY 155 (374)
T ss_dssp EEESSCCTTCSEEECCSCCHHHHHHHHCCHHH------HTSH--HHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHH
T ss_pred EEEecCCCCceeeeccccccceeeeecccchh------hhcH--HHHHHHHHHHHHhhccCCcEEEEcCHHHHHHHHHHh
Confidence 9999854332221111 1333333343111 0000 01122345555554 79999999999999999876
Q ss_pred ccCCCCceeecCCCCCCCCCCCCCc----cchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhh-ccccccc
Q psy12587 155 RSLDHKCLDILYPSVYTEGLEKTTP----EPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSR-LSDEMKT 229 (390)
Q Consensus 155 ~~~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~-~~~~~~~ 229 (390)
+ .+..++.++|||+|.+.+.+... ..+++.++ ..++.++++++|++.+.||++.++++++.+.++ .+
T Consensus 156 ~-~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~----- 227 (374)
T 2iw1_A 156 Q-TEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNG--IKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRH----- 227 (374)
T ss_dssp C-CCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTT--CCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHH-----
T ss_pred C-CChhheEEecCCcCHHhcCcccchhHHHHHHHHhC--CCCCCeEEEEeccchhhcCHHHHHHHHHHhHhccCC-----
Confidence 5 33678999999999887765432 23445554 234678999999999999999999999998776 45
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
+++|+++|+++. ++++++++++++.++|.++|+. +++.++|+.||++++||..|++|++++|||+||+|
T Consensus 228 ~~~l~i~G~g~~---------~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~P 296 (374)
T 2iw1_A 228 NTLLFVVGQDKP---------RKFEALAEKLGVRSNVHFFSGR--NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLP 296 (374)
T ss_dssp TEEEEEESSSCC---------HHHHHHHHHHTCGGGEEEESCC--SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCC
T ss_pred ceEEEEEcCCCH---------HHHHHHHHHcCCCCcEEECCCc--ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCC
Confidence 499999999864 7899999999998999999974 45789999999999999999999999999999999
Q ss_pred EEEecCCCcccceecCcceeeec-C-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 310 VIAVNSGGPKESVVDGRTGFLCE-S-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 310 vi~~~~~~~~e~i~~~~~g~~~~-~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
||+++.++..|++.++.+|++++ + |+++++++|.+++++++ .++++++++++.+ ++++|+..++++.+++++.++
T Consensus 297 vi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 297 VLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSP-LRMAWAENARHYA-DTQDLYSLPEKAADIITGGLD 373 (374)
T ss_dssp EEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHH-HHSCCSCHHHHHHHHHHCC--
T ss_pred EEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHcChH-HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999997 7 99999999999999998 9999999999998 578999999999999988764
No 10
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=4e-43 Score=320.34 Aligned_cols=340 Identities=17% Similarity=0.188 Sum_probs=257.0
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCccc---cc-cCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHCFK---ET-KDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~~~---~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
.||+++++.++ ++|.++||+|+++ ..... .. ...+ .+..++.... ...+....... .....+++
T Consensus 34 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~-----~~l~~~l~ 104 (406)
T 2gek_A 34 PGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGG-KAVPIPYNGS---VARLRFGPATH-----RKVKKWIA 104 (406)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECC-CCC---------------CCHHHH-----HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCC-cEEeccccCC---cccccccHHHH-----HHHHHHHH
Confidence 49999999999 9999999999988 11111 11 0111 1111110000 00000000000 11113445
Q ss_pred -cCCCEEEEcccccchh---HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 -EKPDLVFCDLVSICIP---ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 -~~~Dvi~~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
.+||+||++....... +.+..++|+|+++|+.... ......+ ...++ .+++.+|.++++|+..++.+
T Consensus 105 ~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~----~~~~~~~----~~~~~-~~~~~~d~ii~~s~~~~~~~ 175 (406)
T 2gek_A 105 EGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTK----SLTLSVF----QGILR-PYHEKIIGRIAVSDLARRWQ 175 (406)
T ss_dssp HHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCCS----HHHHHHH----HSTTH-HHHTTCSEEEESSHHHHHHH
T ss_pred hcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcchh----hhhHHHH----HHHHH-HHHhhCCEEEECCHHHHHHH
Confidence 8999999998544332 2233359999999985322 1111111 12233 67899999999999999999
Q ss_pred HHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecc-cccCCHHHHHHHHHHHHhhccccccc
Q psy12587 151 QATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRY-ERKKNLELAIYSLNSLRSRLSDEMKT 229 (390)
Q Consensus 151 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~-~~~K~~~~ll~a~~~l~~~~~~~~~~ 229 (390)
.+.++ ..++ ++|||+|.+.+.+.... .. ++. +.++++++|++ .+.||++.+++++..+.++.++
T Consensus 176 ~~~~~---~~~~-vi~~~v~~~~~~~~~~~---~~---~~~-~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~---- 240 (406)
T 2gek_A 176 MEALG---SDAV-EIPNGVDVASFADAPLL---DG---YPR-EGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPD---- 240 (406)
T ss_dssp HHHHS---SCEE-ECCCCBCHHHHHTCCCC---TT---CSC-SSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTT----
T ss_pred HHhcC---CCcE-EecCCCChhhcCCCchh---hh---ccC-CCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCC----
Confidence 88765 4678 99999998766543311 00 122 45789999999 9999999999999999988775
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCC-CCCCCccHHhhhhcCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKR 308 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~ 308 (390)
++|+|+|.++. +.++++++++ .++|.++|++++.++.++|+.||++|+||. .|++|++++|||+||+
T Consensus 241 -~~l~i~G~~~~---------~~l~~~~~~~--~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~ 308 (406)
T 2gek_A 241 -VEILIVGRGDE---------DELREQAGDL--AGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGT 308 (406)
T ss_dssp -CEEEEESCSCH---------HHHHHHTGGG--GGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTC
T ss_pred -eEEEEEcCCcH---------HHHHHHHHhc--cCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCC
Confidence 99999998752 5777777776 589999999999999999999999999996 9999999999999999
Q ss_pred CEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhh
Q psy12587 309 PVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDK 387 (390)
Q Consensus 309 pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
|||+++.++..|++.++.+|+++++ |+++++++|.+++++++ .+.++++++++.+. +|+|+.+++++.++|++++++
T Consensus 309 PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~-~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~ 386 (406)
T 2gek_A 309 AVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQ-LRAGYVARASERVH-RYDWSVVSAQIMRVYETVSGA 386 (406)
T ss_dssp EEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHGG-GGBHHHHHHHHHHHHHHHCCT
T ss_pred CEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988 99999999999999998 99999999999996 999999999999999999876
Q ss_pred c
Q psy12587 388 K 388 (390)
Q Consensus 388 ~ 388 (390)
+
T Consensus 387 ~ 387 (406)
T 2gek_A 387 G 387 (406)
T ss_dssp T
T ss_pred c
Confidence 4
No 11
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=6.4e-43 Score=319.86 Aligned_cols=349 Identities=16% Similarity=0.162 Sum_probs=251.8
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCccccc-cCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHCFKET-KDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EK 76 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (390)
.||+++++.++ ++|.++||+|+++ ....... ....+.. .+.......... .....+.. +.. ....+++ .+
T Consensus 52 ~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~-~~~-~~~~~l~~~~ 126 (416)
T 2x6q_A 52 GGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHN-ALQGNESLKLTE--EMKELYLN-VNR-ENSKFIDLSS 126 (416)
T ss_dssp SSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHH-HHTTCCSCCCCH--HHHHHHHH-HHH-HHHHSSCGGG
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccce-eecccccccccH--HHHHHHHH-HHH-HHHHHHhhcC
Confidence 59999999999 9999999999876 2111000 0000000 000000000000 00111111 111 1122445 79
Q ss_pred CCEEEEcccccchhHHHhhc-ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEE-EccHhHHHHHHHHh
Q psy12587 77 PDLVFCDLVSICIPILQAKQ-FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIV-VNSEFTKSVVQATF 154 (390)
Q Consensus 77 ~Dvi~~~~~~~~~~~~~~~~-~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii-~~s~~~~~~~~~~~ 154 (390)
||+||+|++..........+ +|+|+++|+...... .. .... ....+.++|.++ ++|+..++ .
T Consensus 127 ~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~------~~----~~~~-~~~~~~~~~~~i~~~s~~~~~----~- 190 (416)
T 2x6q_A 127 FDYVLVHDPQPAALIEFYEKKSPWLWRCHIDLSSPN------RE----FWEF-LRRFVEKYDRYIFHLPEYVQP----E- 190 (416)
T ss_dssp SSEEEEESSTTGGGGGGSCCCSCEEEECCSCCSSCC------HH----HHHH-HHHHHTTSSEEEESSGGGSCT----T-
T ss_pred CCEEEEeccchhhHHHHHHhcCCEEEEEccccCCcc------HH----HHHH-HHHHHHhCCEEEEechHHHHh----h-
Confidence 99999998654433332222 899999997533210 01 1112 234456777766 56654433 2
Q ss_pred ccCCCCceeecCCCCCCCCCCCCCc-----cchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccccccc
Q psy12587 155 RSLDHKCLDILYPSVYTEGLEKTTP-----EPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKT 229 (390)
Q Consensus 155 ~~~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~ 229 (390)
++..++.++|||+|...+.+... ...++.++ ...+.++++++|++.+.||++.+++|+..+.++.|+
T Consensus 191 --~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~---- 262 (416)
T 2x6q_A 191 --LDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFD--VDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPG---- 262 (416)
T ss_dssp --SCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTT--CCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTT----
T ss_pred --CCccceEEeCCCCChhhhcccccChhhHHHHHHHhC--CCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCC----
Confidence 22468999999999876653221 22344443 223678899999999999999999999999988875
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC---hHHHHHHHHhcceEEeCCCCCCCCccHHhhhhc
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS---DAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFC 306 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~---~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~ 306 (390)
++|+|+|+++.. +..+.+.++++++++++.++|.|+|+++ ++++.++|+.||++++||..|+||++++|||+|
T Consensus 263 -~~l~i~G~g~~~---~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~ 338 (416)
T 2x6q_A 263 -VQLLLVGVMAHD---DPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWK 338 (416)
T ss_dssp -CEEEEEECCCTT---CHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHT
T ss_pred -eEEEEEecCccc---chhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHc
Confidence 999999998753 1234477888999999989999999654 788999999999999999999999999999999
Q ss_pred CCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhh
Q psy12587 307 KRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNML 385 (390)
Q Consensus 307 G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
|+|||+++.++.+|++.++.+|++++ |+++++++|.+++++++ .++++++++++.+.++|+|+.+++++.++|++++
T Consensus 339 G~PvI~~~~~g~~e~i~~~~~g~l~~-d~~~la~~i~~ll~~~~-~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 339 GKPVIGRAVGGIKFQIVDGETGFLVR-DANEAVEVVLYLLKHPE-VSKEMGAKAKERVRKNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp TCCEEEESCHHHHHHCCBTTTEEEES-SHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHTC-
T ss_pred CCCEEEccCCCChhheecCCCeEEEC-CHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 99999999999999998 9999999999999889999999999999999876
No 12
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=1.1e-41 Score=317.27 Aligned_cols=290 Identities=14% Similarity=0.166 Sum_probs=221.2
Q ss_pred CCCEEEEcccccchhHHHhh----------cccEEEEeecCCccccchhhhh----------hh--hc-------ccchh
Q psy12587 76 KPDLVFCDLVSICIPILQAK----------QFKVLFYCHYPDQLLSKQGSFL----------KS--IY-------RFPLN 126 (390)
Q Consensus 76 ~~Dvi~~~~~~~~~~~~~~~----------~~~~v~~~h~~~~~~~~~~~~~----------~~--~~-------~~~~~ 126 (390)
.+||+|+|+|.+++....+. ++|+|+|+|+............ .. .. ..-.-
T Consensus 153 ~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (536)
T 3vue_A 153 EDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKI 232 (536)
T ss_dssp SCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEE
T ss_pred CCEEEEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccch
Confidence 46788899987765443321 3899999998643211100000 00 00 00011
Q ss_pred hHHHHHhcCcceEEEccHhHHHHHHHHhcc-------CCCCceeecCCCCCCCCCCCCCccc------------------
Q psy12587 127 KLEEWTTCKADKIVVNSEFTKSVVQATFRS-------LDHKCLDILYPSVYTEGLEKTTPEP------------------ 181 (390)
Q Consensus 127 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~-------~~~~~~~vi~~~~~~~~~~~~~~~~------------------ 181 (390)
.+++..+..||.|+++|+..++.+.+.++. .+..++.+|+||+|.+.+.+.....
T Consensus 233 n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k 312 (536)
T 3vue_A 233 NWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNK 312 (536)
T ss_dssp EHHHHHHHHCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHH
T ss_pred hHHHHHHHhccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHH
Confidence 355777889999999999999998875431 2346899999999999887743211
Q ss_pred --hhhhcCCCC-CCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHH
Q psy12587 182 --IENVLNPLP-GKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVK 258 (390)
Q Consensus 182 --~~~~~~~l~-~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~ 258 (390)
+++.++ ++ +.+.++|+++||+.++||++.+++|+.++.++ +.+++++|.|+. .+...++....
T Consensus 313 ~~l~~~~g-l~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~-------~~~l~l~G~G~~------~~~~~~~~~~~ 378 (536)
T 3vue_A 313 EALQAEAG-LPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE-------DVQIVLLGTGKK------KFEKLLKSMEE 378 (536)
T ss_dssp HHHHHHTT-SCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS-------SCEEEEECCBCH------HHHHHHHHHHH
T ss_pred HHHHHhcC-CCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhh-------CCeEEEEeccCc------hHHHHHHHHHh
Confidence 122222 22 24678999999999999999999999999775 367889998864 33355666666
Q ss_pred HcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCccee---------
Q psy12587 259 KLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGF--------- 329 (390)
Q Consensus 259 ~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~--------- 329 (390)
.+ ++++.+.+..+.+++..+|+.||++++||.+|+||++++|||+||+|||+|+.||++|++.++.+|+
T Consensus 379 ~~--~~~v~~~~~~~~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g 456 (536)
T 3vue_A 379 KY--PGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDC 456 (536)
T ss_dssp HS--TTTEEEECSCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCT
T ss_pred hc--CCceEEEEeccHHHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCce
Confidence 55 4789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -eecC-CHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhh
Q psy12587 330 -LCES-NEEAFAKAMKKIVD--NDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNML 385 (390)
Q Consensus 330 -~~~~-~~~~l~~~i~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
++++ |+++++++|.++++ +.+ .++++.+++ +.++|||++.+++|.++|+++.
T Consensus 457 ~l~~~~d~~~la~ai~ral~~~~~~-~~~~~~~~a---m~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 457 KVVEPSDVKKVAATLKRAIKVVGTP-AYEEMVRNC---MNQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTSH-HHHHHHHHH---HHSCCSSHHHHHHHHHHHHTTC
T ss_pred eEECCCCHHHHHHHHHHHHHhcCcH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHHhh
Confidence 6677 89999999998876 555 677776665 3468999999999999999874
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=2.2e-42 Score=316.03 Aligned_cols=343 Identities=13% Similarity=0.168 Sum_probs=254.8
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCccccccCCCcceEEeccccccccch-hhHHHHHHHHHHHHHHHHHHhh-cC
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHCFKETKDGTLPVKVIGDWLPRNIFG-KFYALCMYLRMIVIALYVAWYS-EK 76 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~ 76 (390)
.||+++++..| ++|.++ |+|+++ ... ....................... ........ . ..++ .+
T Consensus 13 ~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~-~~l~~~~ 81 (413)
T 3oy2_A 13 PSGYGRVMRAIVPRISKA-HEVIVFGIHAF-GRSVHANIEEFDAQTAEHVRGLNEQGFYYSGL--------S-EFIDVHK 81 (413)
T ss_dssp CSHHHHHHHHHHHHHTTT-SEEEEEEESCC-SCCSCSSSEEEEHHHHHHHTTCCSTTCCHHHH--------H-HHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEeecCC-CcccccccccCCccccccccccccccchHHHH--------H-HHHHhcC
Confidence 59999999999 999999 999988 111 00000000000000000000000 00000000 1 1234 89
Q ss_pred CCEEEEcccccchh--HHHhhcc----cEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcc--eEEEccHhHHH
Q psy12587 77 PDLVFCDLVSICIP--ILQAKQF----KVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKAD--KIVVNSEFTKS 148 (390)
Q Consensus 77 ~Dvi~~~~~~~~~~--~~~~~~~----~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~ii~~s~~~~~ 148 (390)
||+||+|.+..... +....+. +++...|....... ...+++++++| .++++|+..++
T Consensus 82 ~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ii~~S~~~~~ 146 (413)
T 3oy2_A 82 PDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIR---------------ENLWWIFSHPKVVGVMAMSKCWIS 146 (413)
T ss_dssp CSEEEEEECHHHHHHHHHHGGGCCSCCEEEEEECCCSBSCC---------------GGGGGGGGCTTEEEEEESSTHHHH
T ss_pred CCEEEEcchHHHHHHHHHHhccCCCCCceeeeccccchhhH---------------HHHHHHHhccCCceEEEcCHHHHH
Confidence 99999996533222 2223333 44555554322110 11256678888 99999999999
Q ss_pred HHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCC-CCCCeEEEEeecccccCCHHHHHHHHHHHHhhccccc
Q psy12587 149 VVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLP-GKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEM 227 (390)
Q Consensus 149 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~ 227 (390)
.+.+. + . ..++.++|||+|.+.+. ..++.++ ++ ..+.++|+++|++.+.||++.+++|+..+.++.++
T Consensus 147 ~~~~~-~-~-~~~~~vi~ngvd~~~~~-----~~~~~~~-~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~-- 215 (413)
T 3oy2_A 147 DICNY-G-C-KVPINIVSHFVDTKTIY-----DARKLVG-LSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPD-- 215 (413)
T ss_dssp HHHHT-T-C-CSCEEECCCCCCCCCCT-----THHHHTT-CGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTT--
T ss_pred HHHHc-C-C-CCceEEeCCCCCHHHHH-----HHHHhcC-CCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCC--
Confidence 99984 3 3 57999999999998772 2333332 11 12678999999999999999999999999988885
Q ss_pred ccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCc-------EEEecCCChHHHHHHHHhcceEEeCCCCCCCCccH
Q psy12587 228 KTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDN-------VLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVP 300 (390)
Q Consensus 228 ~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~-------v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~ 300 (390)
++|+|+|+++.... ..+.+.+++++++++++++ +.+.|+++++++.++|+.||++++||..|+||+++
T Consensus 216 ---~~l~ivG~g~~~~~--~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~ 290 (413)
T 3oy2_A 216 ---AKVRFLCNSHHESK--FDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCS 290 (413)
T ss_dssp ---CCEEEEEECCTTCS--CCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHH
T ss_pred ---cEEEEEeCCcccch--hhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHH
Confidence 99999998875321 1234788899999999886 88889999999999999999999999999999999
Q ss_pred HhhhhcCCCEEEecCCCcccceecCcc---------------ee--eecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q psy12587 301 IEAMFCKRPVIAVNSGGPKESVVDGRT---------------GF--LCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFN 362 (390)
Q Consensus 301 ~Ea~a~G~pvi~~~~~~~~e~i~~~~~---------------g~--~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 362 (390)
+|||+||+|||+|+.++.+|++.++.+ |+ ++++ |+++++++| +++++++ .++++++++++
T Consensus 291 lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~-~~~~~~~~a~~ 368 (413)
T 3oy2_A 291 AEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEK-NRKEYGKRVQD 368 (413)
T ss_dssp HHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHH-HHHHHHHHHHH
T ss_pred HHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHH-HHHHHHHHHHH
Confidence 999999999999999999999998887 88 9988 999999999 9999998 99999999999
Q ss_pred HHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 363 RFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
.+.++|+|+.+++++.++|+++++++
T Consensus 369 ~~~~~fs~~~~~~~~~~~~~~~~~~~ 394 (413)
T 3oy2_A 369 FVKTKPTWDDISSDIIDFFNSLLRVE 394 (413)
T ss_dssp HHTTSCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 99889999999999999999998765
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2.6e-42 Score=307.49 Aligned_cols=298 Identities=12% Similarity=0.050 Sum_probs=239.2
Q ss_pred CCcchhhhHhh-HhhhhcCCceeecCCccccccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhh-cCCCE
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAHDHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYS-EKPDL 79 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv 79 (390)
.||+++++.++ ++|.++||+|+++..........+ +.... . ..+. ....+++ .+||+
T Consensus 29 ~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~--~~~~~----~---~~~~------------~l~~~l~~~~~Dv 87 (342)
T 2iuy_A 29 YGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPG--LTVVP----A---GEPE------------EIERWLRTADVDV 87 (342)
T ss_dssp SCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTT--EEECS----C---CSHH------------HHHHHHHHCCCSE
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCc--ceecc----C---CcHH------------HHHHHHHhcCCCE
Confidence 49999999999 999999999998822221111222 22221 1 1111 1112344 89999
Q ss_pred EEEcccccchhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHHHhccCCC
Q psy12587 80 VFCDLVSICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDH 159 (390)
Q Consensus 80 i~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~ 159 (390)
||+|.......+.+..++| |+++|+..... ..+|.++++|+..++.+.+ .
T Consensus 88 i~~~~~~~~~~~~~~~~~p-v~~~h~~~~~~-----------------------~~~d~ii~~S~~~~~~~~~------~ 137 (342)
T 2iuy_A 88 VHDHSGGVIGPAGLPPGTA-FISSHHFTTRP-----------------------VNPVGCTYSSRAQRAHCGG------G 137 (342)
T ss_dssp EEECSSSSSCSTTCCTTCE-EEEEECSSSBC-----------------------SCCTTEEESCHHHHHHTTC------C
T ss_pred EEECCchhhHHHHhhcCCC-EEEecCCCCCc-----------------------ccceEEEEcCHHHHHHHhc------C
Confidence 9999966554444445589 99999864321 0189999999999887765 3
Q ss_pred CceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCC
Q psy12587 160 KCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGY 239 (390)
Q Consensus 160 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~ 239 (390)
.++.++|||+|.+.+.+.... . .+...++++|++.+.||++.++++++.+ + ++|+|+|++
T Consensus 138 ~~~~vi~ngvd~~~~~~~~~~---------~-~~~~~i~~vG~~~~~Kg~~~li~a~~~~-----~-----~~l~i~G~g 197 (342)
T 2iuy_A 138 DDAPVIPIPVDPARYRSAADQ---------V-AKEDFLLFMGRVSPHKGALEAAAFAHAC-----G-----RRLVLAGPA 197 (342)
T ss_dssp TTSCBCCCCBCGGGSCCSTTC---------C-CCCSCEEEESCCCGGGTHHHHHHHHHHH-----T-----CCEEEESCC
T ss_pred CceEEEcCCCChhhcCccccc---------C-CCCCEEEEEeccccccCHHHHHHHHHhc-----C-----cEEEEEeCc
Confidence 689999999998877654321 1 2445789999999999999999999987 2 889999998
Q ss_pred CCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCC----------CCCCCccHHhhhhcCCC
Q psy12587 240 DPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS----------NEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 240 ~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~----------~e~~~~~~~Ea~a~G~p 309 (390)
+.. +.+++++++++ ++|.|+|+++++++.++|+.||++++||. .|++|++++|||+||+|
T Consensus 198 ~~~--------~~l~~~~~~~~--~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~P 267 (342)
T 2iuy_A 198 WEP--------EYFDEITRRYG--STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTP 267 (342)
T ss_dssp CCH--------HHHHHHHHHHT--TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCC
T ss_pred ccH--------HHHHHHHHHhC--CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCC
Confidence 765 77888888887 79999999999999999999999999999 79999999999999999
Q ss_pred EEEecCCCcccceec--CcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhh
Q psy12587 310 VIAVNSGGPKESVVD--GRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDK 387 (390)
Q Consensus 310 vi~~~~~~~~e~i~~--~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
||+++.++..|++.+ +.+|+++++|+++++++|.++++ ++++++.+.++|+|+.+++++.++|++++++
T Consensus 268 vI~s~~~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~---------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 268 VVGTGNGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPA---------SDEVRRAAVRLWGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp EEECCTTTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSCC---------HHHHHHHHHHHHBHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCChHHHhcccCCCceEEcCCCHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHcc
Confidence 999999999999999 88999987799999999999876 4677788888999999999999999999887
Q ss_pred cC
Q psy12587 388 KT 389 (390)
Q Consensus 388 ~~ 389 (390)
.+
T Consensus 339 ~~ 340 (342)
T 2iuy_A 339 AT 340 (342)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=1e-37 Score=282.62 Aligned_cols=268 Identities=13% Similarity=0.038 Sum_probs=197.7
Q ss_pred cCCCEEEEcccccchhHHHh----------hcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcc--eEEEc
Q psy12587 75 EKPDLVFCDLVSICIPILQA----------KQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKAD--KIVVN 142 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~----------~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~ii~~ 142 (390)
.+||+||++.+.....+... .+.|.++.+|+.+....... ....+.+..++.++ .++++
T Consensus 131 ~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~vi~~ 201 (413)
T 2x0d_A 131 AKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWS---------SQYVLAESTYKYRGPQIAVFN 201 (413)
T ss_dssp CTTEEEEECSHHHHHHHHHHHHHHHHHHTCCCCCEEEEECSCGGGGSCSS---------HHHHHHHHTTSCCSCEEEEEE
T ss_pred CCCCEEEEehHHHHHHHHHhhhhhhhhcccccCcEEEEEeechhhcCccC---------hHHHHHHHHhccCCceEEEEc
Confidence 67999999987655444333 13577877776543211110 01233455666665 58999
Q ss_pred cHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecc-cccCCHHHHHHHHHHHHh
Q psy12587 143 SEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRY-ERKKNLELAIYSLNSLRS 221 (390)
Q Consensus 143 s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~-~~~K~~~~ll~a~~~l~~ 221 (390)
|+.+++.+.+. +.+..++.++|||+|.+.+..... ...+...++++||+ .+.||++.+++|++.+.+
T Consensus 202 S~~~~~~l~~~--g~~~~~~~~i~~g~d~~~~~~~~~----------~~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~ 269 (413)
T 2x0d_A 202 SELLKQYFNNK--GYNFTDEYFFQPKINTTLKNYIND----------KRQKEKIILVYGRPSVKRNAFTLIVEALKIFVQ 269 (413)
T ss_dssp SHHHHHHHHHH--TCCCSEEEEECCCCCHHHHTTTTS----------CCCCCSEEEEEECTTCGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHc--CCCCCceEEeCCCcCchhhccccc----------ccCCCCEEEEEecCchhccCHHHHHHHHHHHHH
Confidence 99999999885 332467899999998765432110 11244567888996 688999999999999987
Q ss_pred hcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHH
Q psy12587 222 RLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPI 301 (390)
Q Consensus 222 ~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~ 301 (390)
+.|+ ..+++|+++|+++.. .++++.++|.|+|+++.+++.++|+.||++++||..|+||++++
T Consensus 270 ~~~~--~~~~~l~ivG~~~~~---------------~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~l 332 (413)
T 2x0d_A 270 KYDR--SNEWKIISVGEKHKD---------------IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPL 332 (413)
T ss_dssp HCTT--GGGCEEEEEESCCCC---------------EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHH
T ss_pred hCCC--CCceEEEEEcCCchh---------------hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHH
Confidence 7651 003899999988653 24566789999999999999999999999999999999999999
Q ss_pred hhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy12587 302 EAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTI 380 (390)
Q Consensus 302 Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
||||||+|||+++ +|..|++.++.+|+++++ |+++++++|.++++|++ .+++ ++++.+ +.|+|+...++ .+.
T Consensus 333 EAmA~G~PVV~~~-~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll~~~~-~~~~---~~~~~~-~~~~W~~~~~~-~~~ 405 (413)
T 2x0d_A 333 EMAHFGLRVITNK-YENKDLSNWHSNIVSLEQLNPENIAETLVELCMSFN-NRDV---DKKESS-NMMFYINEFNE-FSF 405 (413)
T ss_dssp HHHHTTCEEEEEC-BTTBCGGGTBTTEEEESSCSHHHHHHHHHHHHHHTC-----------CCB-SCGGGCCCC----TT
T ss_pred HHHhCCCcEEEeC-CCcchhhhcCCCEEEeCCCCHHHHHHHHHHHHcCHH-HHHH---hHHHHH-HhCCHHHHHHH-HHH
Confidence 9999999999955 567899999999999998 99999999999999998 7666 566665 68999999877 667
Q ss_pred HHhhhhh
Q psy12587 381 VNNMLDK 387 (390)
Q Consensus 381 ~~~~~~~ 387 (390)
|+++..+
T Consensus 406 ~~~l~~~ 412 (413)
T 2x0d_A 406 IKEIEEK 412 (413)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 7776543
No 16
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=100.00 E-value=1.8e-34 Score=261.66 Aligned_cols=245 Identities=13% Similarity=0.093 Sum_probs=191.8
Q ss_pred cCCCEEEEcccccch--hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 75 EKPDLVFCDLVSICI--PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~--~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
.++|+||.+...... .+.+..++|++++.|+.+..... ........+++.+++.+|.++++|+..++.+.+
T Consensus 123 ~~~DvIh~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~-------~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~ 195 (406)
T 2hy7_A 123 RESDVIVFESGIAVAFIELAKRVNPAAKLVYRASDGLSTI-------NVASYIEREFDRVAPTLDVIALVSPAMAAEVVS 195 (406)
T ss_dssp HHCSEEEEESSGGGGGHHHHHHHCTTSEEEEEESSCHHHH-------TCCHHHHHHHHHHGGGCSEEEESCGGGGGGCSC
T ss_pred cCCCEEEECCchHHHHHHHHHHhCCCEEEEEeccchhhcc-------cccHHHHHHHHHHHHhCCEEEEcCHHHHHHHHh
Confidence 479999955433333 34455569999999976431100 011223466788899999999999998876654
Q ss_pred HhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceE
Q psy12587 153 TFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVK 232 (390)
Q Consensus 153 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~ 232 (390)
. . ++.++|||+|.+.+.+.... +.++.++++|+|++.+.||+ +..+.+..++ ++
T Consensus 196 ~-----~-~i~vipngvd~~~f~~~~~~---------~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~~~-----~~ 249 (406)
T 2hy7_A 196 R-----D-NVFHVGHGVDHNLDQLGDPS---------PYAEGIHAVAVGSMLFDPEF------FVVASKAFPQ-----VT 249 (406)
T ss_dssp S-----T-TEEECCCCBCTTHHHHHCSC---------SCCSSEEEEEECCTTBCHHH------HHHHHHHCTT-----EE
T ss_pred c-----C-CEEEEcCCcChHhcCccccc---------ccCCCcEEEEEeccccccCH------HHHHHHhCCC-----eE
Confidence 2 2 89999999998776542211 22244789999999999998 3444445564 99
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhh-------h
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAM-------F 305 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~-------a 305 (390)
|+|+|+|+ ++++++.++|.|+|+++++++..+|+.||++++||..|++|++++||| |
T Consensus 250 l~ivG~g~----------------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla 313 (406)
T 2hy7_A 250 FHVIGSGM----------------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDF 313 (406)
T ss_dssp EEEESCSS----------------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHH
T ss_pred EEEEeCch----------------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhh
Confidence 99999874 345677899999999999999999999999999999999999999999 9
Q ss_pred cCCCEEEecCCCcccceecCcceee-ecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHH--H
Q psy12587 306 CKRPVIAVNSGGPKESVVDGRTGFL-CES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTI--V 381 (390)
Q Consensus 306 ~G~pvi~~~~~~~~e~i~~~~~g~~-~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 381 (390)
||+|||+|+. +.++.+|++ +++ |+++++++|.+++++++ . ...++|+|+..++++.++ |
T Consensus 314 ~G~PVIas~~------v~~~~~G~l~v~~~d~~~la~ai~~ll~~~~-~----------~~~~~~sw~~~a~~~~~~~~y 376 (406)
T 2hy7_A 314 FGLPAVCPNA------VVGPYKSRFGYTPGNADSVIAAITQALEAPR-V----------RYRQCLNWSDTTDRVLDPRAY 376 (406)
T ss_dssp HTCCEEEEGG------GTCSCSSEEEECTTCHHHHHHHHHHHHHCCC-C----------CCSCCCBHHHHHHHHHCGGGS
T ss_pred CCCcEEEehh------cccCcceEEEeCCCCHHHHHHHHHHHHhCcc-h----------hhhhcCCHHHHHHHHHHhhcc
Confidence 9999999997 567789999 998 99999999999999876 1 234789999999999999 8
Q ss_pred Hhhh
Q psy12587 382 NNML 385 (390)
Q Consensus 382 ~~~~ 385 (390)
+++.
T Consensus 377 ~~~~ 380 (406)
T 2hy7_A 377 PETR 380 (406)
T ss_dssp GGGB
T ss_pred cccC
Confidence 7654
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=100.00 E-value=1.2e-33 Score=253.86 Aligned_cols=322 Identities=9% Similarity=-0.043 Sum_probs=226.3
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCc-c-ccccCCCcceEEecccc-cccc-chhhHHHHHHHHHHHHHHHHHHhh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHC-F-KETKDGTLPVKVIGDWL-PRNI-FGKFYALCMYLRMIVIALYVAWYS 74 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~-~-~~~~~~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 74 (390)
.||.++.+..| ++|.++||+|+++ ... . ......++.+..++... .... ...+.......... .. ...+++
T Consensus 16 ~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-l~~~l~ 93 (364)
T 1f0k_A 16 TGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAW-RQ-ARAIMK 93 (364)
T ss_dssp SHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHHHHHH-HH-HHHHHH
T ss_pred CccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhccccCCceEEecCCccCcCccHHHHHHHHHHHHHH-HH-HHHHHH
Confidence 47888999999 9999999999988 221 1 11222355555543211 1100 01111111111111 11 123455
Q ss_pred -cCCCEEEEcccccch---hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 -EKPDLVFCDLVSICI---PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 -~~~Dvi~~~~~~~~~---~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
.+||+||++.....+ .+.+..++|+|++.|+... ....+++.+.+|.+++.++..
T Consensus 94 ~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~-----------------~~~~~~~~~~~d~v~~~~~~~---- 152 (364)
T 1f0k_A 94 AYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIA-----------------GLTNKWLAKIATKVMQAFPGA---- 152 (364)
T ss_dssp HHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSSC-----------------CHHHHHHTTTCSEEEESSTTS----
T ss_pred hcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCCC-----------------cHHHHHHHHhCCEEEecChhh----
Confidence 899999999754332 2334455999998886421 022355677899999988653
Q ss_pred HHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccc
Q psy12587 151 QATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTH 230 (390)
Q Consensus 151 ~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~ 230 (390)
++ ++.+++||++.+.+.+.. .+..++ ++.+...++++.|++.+.|+.+.+++++..+.+ +
T Consensus 153 ---~~-----~~~~i~n~v~~~~~~~~~---~~~~~~-~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~----- 212 (364)
T 1f0k_A 153 ---FP-----NAEVVGNPVRTDVLALPL---PQQRLA-GREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---S----- 212 (364)
T ss_dssp ---SS-----SCEECCCCCCHHHHTSCC---HHHHHT-TCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---G-----
T ss_pred ---cC-----CceEeCCccchhhcccch---hhhhcc-cCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---C-----
Confidence 22 678999999887654422 222332 233334566677899999999999999999865 2
Q ss_pred eE-EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 231 VK-LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 231 ~~-l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
++ ++++|+++. +++++.++++++ ++|.+.|++ +++..+|+.||++++|| + |++++|||+||+|
T Consensus 213 ~~~l~i~G~~~~---------~~l~~~~~~~~~-~~v~~~g~~--~~~~~~~~~ad~~v~~s---g-~~~~~EAma~G~P 276 (364)
T 1f0k_A 213 VTIWHQSGKGSQ---------QSVEQAYAEAGQ-PQHKVTEFI--DDMAAAYAWADVVVCRS---G-ALTVSEIAAAGLP 276 (364)
T ss_dssp EEEEEECCTTCH---------HHHHHHHHHTTC-TTSEEESCC--SCHHHHHHHCSEEEECC---C-HHHHHHHHHHTCC
T ss_pred cEEEEEcCCchH---------HHHHHHHhhcCC-CceEEecch--hhHHHHHHhCCEEEECC---c-hHHHHHHHHhCCC
Confidence 67 567888762 788888888887 579999999 45689999999999998 2 8999999999999
Q ss_pred EEEecCCCcc--------cceecCcceeeecC-C--HHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 310 VIAVNSGGPK--------ESVVDGRTGFLCES-N--EEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 310 vi~~~~~~~~--------e~i~~~~~g~~~~~-~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
||+++.++.+ ++++++ .|+++++ | +++++++|.++ |++ .++++++++++.+ +.|+|+.+++++.
T Consensus 277 vi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~l--~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 351 (364)
T 1f0k_A 277 ALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAGW--SRE-TLLTMAERARAAS-IPDATERVANEVS 351 (364)
T ss_dssp EEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHTC--CHH-HHHHHHHHHHHTC-CTTHHHHHHHHHH
T ss_pred EEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHhc--CHH-HHHHHHHHHHHhh-ccCHHHHHHHHHH
Confidence 9999998764 455555 5999988 7 99999999999 777 8999999999887 6899999999999
Q ss_pred HHHHhhhhh
Q psy12587 379 TIVNNMLDK 387 (390)
Q Consensus 379 ~~~~~~~~~ 387 (390)
++|++.-+.
T Consensus 352 ~~y~~~~~~ 360 (364)
T 1f0k_A 352 RVARALEHH 360 (364)
T ss_dssp HHHTTC---
T ss_pred HHHHHHHhh
Confidence 999876544
No 18
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=100.00 E-value=1.3e-32 Score=252.54 Aligned_cols=310 Identities=13% Similarity=0.117 Sum_probs=214.1
Q ss_pred cCCCEEEEcccccchhHHHhh----cccEEEEeecCCcccc---chh-hhhhhhc----------cc--chhhHHHHHhc
Q psy12587 75 EKPDLVFCDLVSICIPILQAK----QFKVLFYCHYPDQLLS---KQG-SFLKSIY----------RF--PLNKLEEWTTC 134 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~~----~~~~v~~~h~~~~~~~---~~~-~~~~~~~----------~~--~~~~~~~~~~~ 134 (390)
.+|||+|+|.|..++.+..++ .+|+|+|+|+...... ... .+...+- .. -...+++..+.
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKaga~ 259 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAH 259 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHHHH
Confidence 569999999998877665554 2999999998632111 000 0000000 00 12356788899
Q ss_pred CcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCc---------cchhhh----cC-C--CCCCCCeEEE
Q psy12587 135 KADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTP---------EPIENV----LN-P--LPGKEDIVFL 198 (390)
Q Consensus 135 ~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---------~~~~~~----~~-~--l~~~~~~~i~ 198 (390)
.||.|+++|+.+++++...++.. .+ .+||||+|.+.|.+... ..+.+. +. . ++.++.++++
T Consensus 260 ~AD~ITTVS~~yA~Ei~~Ll~r~-~d--~iIpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~liif 336 (725)
T 3nb0_A 260 SADVFTTVSQITAFEAEHLLKRK-PD--GILPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFF 336 (725)
T ss_dssp HSSEEEESSHHHHHHHHHHTSSC-CS--EECCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEEEEE
T ss_pred hCCEEEECCHHHHHHHHHHhcCC-CC--EEEcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCceeEEE
Confidence 99999999999999999876532 33 33999999999987521 111111 11 1 2233556677
Q ss_pred Eeeccc-ccCCHHHHHHHHHHHHhhccc--ccccceEEEEEcCCCCCCc----ch-------------------------
Q psy12587 199 SINRYE-RKKNLELAIYSLNSLRSRLSD--EMKTHVKLVVAGGYDPHNI----EN------------------------- 246 (390)
Q Consensus 199 ~~g~~~-~~K~~~~ll~a~~~l~~~~~~--~~~~~~~l~i~G~~~~~~~----~~------------------------- 246 (390)
.+||+. .+||++.+++|+.++...... ....-+.|+|+..+..... .+
T Consensus 337 ivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 416 (725)
T 3nb0_A 337 IAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDH 416 (725)
T ss_dssp EESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 789999 789999999999998754210 0112477888776633210 00
Q ss_pred ----------------------------------------------------hHHHHHHHHHHHHcCCCCc------EEE
Q psy12587 247 ----------------------------------------------------VEYYKELGVLVKKLKLSDN------VLF 268 (390)
Q Consensus 247 ----------------------------------------------------~~y~~~~~~~~~~~~l~~~------v~~ 268 (390)
.+..+.+...++++++.+. |.|
T Consensus 417 ~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVKVIf 496 (725)
T 3nb0_A 417 AIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIF 496 (725)
T ss_dssp HHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEEEEE
T ss_pred HhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCCceeEEE
Confidence 0111334445566666555 445
Q ss_pred e-cCCChH------HHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecC-------cceeeec--
Q psy12587 269 L-TSPSDA------AKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDG-------RTGFLCE-- 332 (390)
Q Consensus 269 ~-g~~~~~------e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~-------~~g~~~~-- 332 (390)
+ ++++.. ++.++|+.||++|+||.+|+||++++||||||+|||+|+.+|+++.+.++ .+|+++.
T Consensus 497 ~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV~~r 576 (725)
T 3nb0_A 497 HPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDR 576 (725)
T ss_dssp CCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEEEECC
T ss_pred eccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCCceEEEeCC
Confidence 4 667665 47899999999999999999999999999999999999999999998775 3698883
Q ss_pred -C-CHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhhhc
Q psy12587 333 -S-NEEAFAKAMKKIV----DNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 333 -~-~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
+ ++++++++|.+++ +.+.+.+..+++++++.+ +.|+|+..+++++++|++++.+.
T Consensus 577 d~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 577 RFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKARQLALRRG 637 (725)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhhc
Confidence 3 5666555555444 434437888998888776 79999999999999999988653
No 19
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=100.00 E-value=2e-31 Score=244.11 Aligned_cols=292 Identities=9% Similarity=0.112 Sum_probs=209.7
Q ss_pred cCCCEEEEcccccchhHHHh--h--cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHH
Q psy12587 75 EKPDLVFCDLVSICIPILQA--K--QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVV 150 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~~~~~~~--~--~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 150 (390)
..+|+||+|++...+....+ . +.|+++++|.+..... ..+.+ . ....+. ..+-.+|.+.+.+....+.+
T Consensus 122 ~~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pfp~~~----~~~~l-p-~~~~il-~~ll~~d~i~f~~~~~~~~f 194 (482)
T 1uqt_A 122 QDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPE----IFNAL-P-TYDTLL-EQLCDYDLLGFQTENDRLAF 194 (482)
T ss_dssp CTTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCCCHH----HHTTS-T-THHHHH-HHHTTSSEEEESSHHHHHHH
T ss_pred CCCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCCCCHH----HHhhC-c-cHHHHH-HhhhccCeEEEECHHHHHHH
Confidence 56799999987544332222 2 3899999998633111 01100 0 001111 11335688877776655554
Q ss_pred HHH----------------hccCCCCceeecCCCCCCCCCCCCC-------ccchhhhcCCCCCCCCeEEEEeecccccC
Q psy12587 151 QAT----------------FRSLDHKCLDILYPSVYTEGLEKTT-------PEPIENVLNPLPGKEDIVFLSINRYERKK 207 (390)
Q Consensus 151 ~~~----------------~~~~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~i~~~g~~~~~K 207 (390)
... +.+ ...++.++|||+|.+.|.+.. ...+++.++ ++++|+++||+.+.|
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~g-~~~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~-----~~~vil~VgRl~~~K 268 (482)
T 1uqt_A 195 LDCLSNLTRVTTRSAKSHTAWG-KAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELK-----NVQNIFSVERLDYSK 268 (482)
T ss_dssp HHHHHHHSCEEEETTTEEEETT-EEEEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTT-----TCEEEEEECCBCGGG
T ss_pred HHHHHHHhCCccccCCeEEECC-eEEEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHhC-----CCEEEEEEeCCcccC
Confidence 421 111 135789999999988765321 123444442 568899999999999
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCC-CcchhHHHHHHHHHHHHcC----CC--CcEE-EecCCChHHHHH
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPH-NIENVEYYKELGVLVKKLK----LS--DNVL-FLTSPSDAAKIS 279 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~-~~~~~~y~~~~~~~~~~~~----l~--~~v~-~~g~~~~~e~~~ 279 (390)
|++.+++|++.+.+++|+ ...++.|+++|..... .++...+.+++++++.+++ .. ..|. +.|.++.+++..
T Consensus 269 gi~~ll~A~~~ll~~~p~-~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ 347 (482)
T 1uqt_A 269 GLPERFLAYEALLEKYPQ-HHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMK 347 (482)
T ss_dssp CHHHHHHHHHHHHHHCGG-GTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-ccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHH
Confidence 999999999999888763 1124789999974321 1112334566666665532 11 1355 578999999999
Q ss_pred HHHhcceEEeCCCCCCCCccHHhhhhcCC-----CEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHH
Q psy12587 280 LFKFCHCIIYTPSNEHFGIVPIEAMFCKR-----PVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNII 353 (390)
Q Consensus 280 ~~~~adv~v~ps~~e~~~~~~~Ea~a~G~-----pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~ 353 (390)
+|+.||++++||..||||++++||||||+ |+|+|+.+|..+.+ .+|+++++ |+++++++|.++++++.+++
T Consensus 348 ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l---~~g~lv~p~d~~~lA~ai~~lL~~~~~~r 424 (482)
T 1uqt_A 348 IFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL---TSALIVNPYDRDEVAAALDRALTMSLAER 424 (482)
T ss_dssp HHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC---TTSEEECTTCHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh---CCeEEECCCCHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999997 89999988887777 27899999 99999999999999775478
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHHHHHHhh
Q psy12587 354 QQFSQFGFNRFNEKFSFQAFSIQLNTIVNNM 384 (390)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (390)
+++.+++++.+ +.|||+.+++++++.|+++
T Consensus 425 ~~~~~~~~~~v-~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 425 ISRHAEMLDVI-VKNDINHWQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHH-HHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHhc
Confidence 89999999998 5799999999999999876
No 20
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=3.6e-32 Score=258.44 Aligned_cols=314 Identities=10% Similarity=0.071 Sum_probs=227.4
Q ss_pred CCcchhhhHhh-Hh--hhhcCCceeec-CC-c-cc----cccCCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHH
Q psy12587 2 LGATARLTITA-TA--WGATGPRTTAH-DH-C-FK----ETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVA 71 (390)
Q Consensus 2 ~GG~~~~~~~l-~~--L~~~G~~V~~~-~~-~-~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (390)
.||+++++.++ +. +.+.||+|+++ .. . .. ...... .+..+. .. . ... ...
T Consensus 217 ~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~-~---~~~---------l~~ 276 (568)
T 2vsy_A 217 AHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS-TLHDVT------AL-G---HLA---------TAK 276 (568)
T ss_dssp SSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS-EEEECT------TC-C---HHH---------HHH
T ss_pred cChHHHHHHHHHhhccCCcccEEEEEEECCCCCccHHHHHHHhcC-eEEECC------CC-C---HHH---------HHH
Confidence 47899999999 99 78889999888 21 1 00 011111 111110 00 0 111 112
Q ss_pred Hhh-cCCCEEEEccccc---chhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHH
Q psy12587 72 WYS-EKPDLVFCDLVSI---CIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTK 147 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~---~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 147 (390)
+++ .+|||||.+.... .+........|+++++|+..... . ... ..+..+|.++++|+...
T Consensus 277 ~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~-----------~~~~~~d~~i~~s~~~~ 340 (568)
T 2vsy_A 277 HIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTS----G-APW-----------MDYVLGDAFALPPALEP 340 (568)
T ss_dssp HHHHTTCSEEEECSSCTTCSSCHHHHTCCSSEEEEESSSSSCC----C-CTT-----------CCEEEECTTTSCTTTGG
T ss_pred HHHhCCCCEEEECCCCCCcchHHHHhcCCCceeEeeecCCccc----C-CCC-----------ceEEEECCCcCCccccc
Confidence 344 8999999865322 12222222378888877532110 0 000 01224788888887654
Q ss_pred HHHHHHhccCCCCceeecCCCCCCCCCCC-CCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccc
Q psy12587 148 SVVQATFRSLDHKCLDILYPSVYTEGLEK-TTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDE 226 (390)
Q Consensus 148 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~ 226 (390)
+ | .+++.++||.+.+....+ ......++.++ ++. +.+ ++++|++.+ ||++.+++++..+.++.|+
T Consensus 341 ~-----~----~~~i~~ipn~~~~~~~~~~~~~~~~r~~~~-~~~-~~~-v~~~g~~~~-K~~~~li~a~~~l~~~~~~- 406 (568)
T 2vsy_A 341 F-----Y----SEHVLRLQGAFQPSDTSRVVAEPPSRTQCG-LPE-QGV-VLCCFNNSY-KLNPQSMARMLAVLREVPD- 406 (568)
T ss_dssp G-----C----SSEEEECSSCSCCCCTTCCCCCCCCTGGGT-CCT-TSC-EEEECCCGG-GCCHHHHHHHHHHHHHCTT-
T ss_pred C-----C----cceeEcCCCcCCCCCCCCCCCCCCCccccC-CCC-CCE-EEEeCCccc-cCCHHHHHHHHHHHHhCCC-
Confidence 3 2 368999999654432211 12233445554 232 444 569999999 9999999999999888885
Q ss_pred cccceEEEEEc-CCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhh
Q psy12587 227 MKTHVKLVVAG-GYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAM 304 (390)
Q Consensus 227 ~~~~~~l~i~G-~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~ 304 (390)
++|+|+| +++.. +.+++.++++|+. ++|.|+|+++++++..+|+.||++|+||.+ |+|++++|||
T Consensus 407 ----~~l~i~G~~g~~~--------~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~g~~~lEAm 473 (568)
T 2vsy_A 407 ----SVLWLLSGPGEAD--------ARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-NAHTTASDAL 473 (568)
T ss_dssp ----CEEEEECCSTTHH--------HHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHH
T ss_pred ----cEEEEecCCHHHH--------HHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CCcHHHHHHH
Confidence 9999999 66443 8899999999998 999999999999999999999999999999 9999999999
Q ss_pred hcCCCEEE-------ecCC-------CcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHH--hhhc
Q psy12587 305 FCKRPVIA-------VNSG-------GPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRF--NEKF 368 (390)
Q Consensus 305 a~G~pvi~-------~~~~-------~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~~ 368 (390)
+||+|||+ |+.+ |.+|++.+ |+++++++|.++++|++ .++++++++++.+ .+.|
T Consensus 474 a~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~---------~~~~la~~i~~l~~~~~-~~~~~~~~~~~~~~~~~~f 543 (568)
T 2vsy_A 474 WTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA---------DDAAFVAKAVALASDPA-ALTALHARVDVLRRASGVF 543 (568)
T ss_dssp HTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS---------SHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHSSTT
T ss_pred hCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC---------CHHHHHHHHHHHhcCHH-HHHHHHHHHHHhhhcCCCC
Confidence 99999999 9998 88887743 89999999999999999 9999999999988 6899
Q ss_pred CHHHHHHHHHHHHHhhhhhc
Q psy12587 369 SFQAFSIQLNTIVNNMLDKK 388 (390)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~ 388 (390)
+|+.+++++.++|++++++.
T Consensus 544 ~~~~~~~~~~~~y~~~~~~~ 563 (568)
T 2vsy_A 544 HMDGFADDFGALLQALARRH 563 (568)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 21
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.98 E-value=5.9e-32 Score=244.56 Aligned_cols=283 Identities=12% Similarity=0.071 Sum_probs=203.9
Q ss_pred Hhh-cCCCEEEEccc-ccchh---HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHH-hcCcceEEEccHh
Q psy12587 72 WYS-EKPDLVFCDLV-SICIP---ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWT-TCKADKIVVNSEF 145 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~-~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ad~ii~~s~~ 145 (390)
+++ .+||+||+|+. ...++ +.+..++|++++.|+..... . +........+.+ .+.+|.++++|+.
T Consensus 81 ~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~d~ii~~s~~ 151 (384)
T 1vgv_A 81 ILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD-L--------YSPWPEEANRTLTGHLAMYHFSPTET 151 (384)
T ss_dssp HHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSC-T--------TSSTTHHHHHHHHHTTCSEEEESSHH
T ss_pred HHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccccc-c--------cCCCchHhhHHHHHhhccEEEcCcHH
Confidence 455 89999999874 22222 23444599998888643210 0 001111222333 5669999999999
Q ss_pred HHHHHHHHhccCCCCceeecCCCC-CCCCCCCCC-c------cchhhhcCCCCCCCCeEEEEeeccccc-CCHHHHHHHH
Q psy12587 146 TKSVVQATFRSLDHKCLDILYPSV-YTEGLEKTT-P------EPIENVLNPLPGKEDIVFLSINRYERK-KNLELAIYSL 216 (390)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~~~~-~------~~~~~~~~~l~~~~~~~i~~~g~~~~~-K~~~~ll~a~ 216 (390)
.++.+.+. +.+.+++.+++||+ |...+.... . ...++.++.++.+++++++++||+.+. ||++.+++|+
T Consensus 152 ~~~~l~~~--g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a~ 229 (384)
T 1vgv_A 152 SRQNLLRE--NVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHAL 229 (384)
T ss_dssp HHHHHHHT--TCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHH
T ss_pred HHHHHHHc--CCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHHHHHH
Confidence 99988764 44467899999995 332221110 0 012222210123355788899999876 9999999999
Q ss_pred HHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCC
Q psy12587 217 NSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHF 296 (390)
Q Consensus 217 ~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~ 296 (390)
..+.++.++ +++++.++... .+.+.+++.+.. .++|.|+|+++..++.++|+.||++|+||
T Consensus 230 ~~l~~~~~~-----~~l~i~~g~~~------~~~~~l~~~~~~---~~~v~~~g~~~~~~~~~~~~~ad~~v~~S----- 290 (384)
T 1vgv_A 230 ADIATTHQD-----IQIVYPVHLNP------NVREPVNRILGH---VKNVILIDPQEYLPFVWLMNHAWLILTDS----- 290 (384)
T ss_dssp HHHHHHCTT-----EEEEEECCBCH------HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHHCSEEEESS-----
T ss_pred HHHHhhCCC-----eEEEEEcCCCH------HHHHHHHHHhhc---CCCEEEeCCCCHHHHHHHHHhCcEEEECC-----
Confidence 999887775 88888633211 233555555432 36899999999899999999999999999
Q ss_pred CccHHhhhhcCCCEEEecC-CCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHH
Q psy12587 297 GIVPIEAMFCKRPVIAVNS-GGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSI 375 (390)
Q Consensus 297 ~~~~~Ea~a~G~pvi~~~~-~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (390)
|.+++|||+||+|||+++. ++..|++.++ +|+++++|+++++++|.++++|++ .+++|++++++.. +.|+|+.+++
T Consensus 291 g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~d~~~la~~i~~ll~d~~-~~~~~~~~~~~~~-~~~~~~~i~~ 367 (384)
T 1vgv_A 291 GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGTDKQRIVEEVTRLLKDEN-EYQAMSRAHNPYG-DGQACSRILE 367 (384)
T ss_dssp STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECSSHHHHHHHHHHHHHCHH-HHHHHHSSCCTTC-CSCHHHHHHH
T ss_pred cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCCCHHHHHHHHHHHHhChH-HHhhhhhccCCCc-CCCHHHHHHH
Confidence 4558999999999999987 8899999887 999996699999999999999998 9999999888775 7899999999
Q ss_pred HHHHHHHhhhhh
Q psy12587 376 QLNTIVNNMLDK 387 (390)
Q Consensus 376 ~~~~~~~~~~~~ 387 (390)
.+.++++++.+.
T Consensus 368 ~~~~~~~~~~~~ 379 (384)
T 1vgv_A 368 ALKNNRISLGSH 379 (384)
T ss_dssp HHHHTCCCC---
T ss_pred HHHHHHHhhccc
Confidence 999988877654
No 22
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.98 E-value=6.4e-32 Score=243.53 Aligned_cols=273 Identities=13% Similarity=0.053 Sum_probs=200.3
Q ss_pred Hhh-cCCCEEEEcccc-cchh---HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHH-HhcCcceEEEccHh
Q psy12587 72 WYS-EKPDLVFCDLVS-ICIP---ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEW-TTCKADKIVVNSEF 145 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~-~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~ii~~s~~ 145 (390)
+++ .+||+||+|+.. ..+. +.+..++|+|++.|+.... . . +..+..++.+. +.+.+|.++++|+.
T Consensus 90 ~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~~----~-~----~~~~~~~~~~~~~~~~~d~ii~~s~~ 160 (375)
T 3beo_A 90 VMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRTW----D-K----YSPYPEEMNRQLTGVMADLHFSPTAK 160 (375)
T ss_dssp HHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCCS----C-T----TSSTTHHHHHHHHHHHCSEEEESSHH
T ss_pred HHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEecccccc----c-c----cCCChhHhhhhHHhhhhheeeCCCHH
Confidence 445 899999998742 2222 2344458998776653110 0 0 00111122333 34459999999999
Q ss_pred HHHHHHHHhccCCCCceeecCCC-CCCCCCCCC--CccchhhhcCCCCCCCCeEEEEeeccccc-CCHHHHHHHHHHHHh
Q psy12587 146 TKSVVQATFRSLDHKCLDILYPS-VYTEGLEKT--TPEPIENVLNPLPGKEDIVFLSINRYERK-KNLELAIYSLNSLRS 221 (390)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~vi~~~-~~~~~~~~~--~~~~~~~~~~~l~~~~~~~i~~~g~~~~~-K~~~~ll~a~~~l~~ 221 (390)
.++.+.+. +.+.+++.++||| +|...+.+. .....+..+ + +++++++++||+.+. ||++.+++|++.+.+
T Consensus 161 ~~~~~~~~--g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~---~-~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~ 234 (375)
T 3beo_A 161 SATNLQKE--NKDESRIFITGNTAIDALKTTVKETYSHPVLEKL---G-NNRLVLMTAHRRENLGEPMRNMFRAIKRLVD 234 (375)
T ss_dssp HHHHHHHT--TCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT---T-TSEEEEEECCCGGGTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCcccEEEECChhHhhhhhhhhhhhhHHHHHhc---c-CCCeEEEEecccccchhHHHHHHHHHHHHHh
Confidence 99998774 4546789999999 776544332 112233322 2 356678899999875 999999999999988
Q ss_pred hcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHc-CCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccH
Q psy12587 222 RLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKL-KLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVP 300 (390)
Q Consensus 222 ~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~-~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~ 300 (390)
+.|+ +++++ |.++. .++++.++++ +..++|.|+|+++..++..+|+.||++++|| |.++
T Consensus 235 ~~~~-----~~~i~-~~g~~---------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~ 294 (375)
T 3beo_A 235 KHED-----VQVVY-PVHMN---------PVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQ 294 (375)
T ss_dssp HCTT-----EEEEE-ECCSC---------HHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHH
T ss_pred hCCC-----eEEEE-eCCCC---------HHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChH
Confidence 7775 88655 55543 3333333332 3236899999999999999999999999998 6679
Q ss_pred HhhhhcCCCEEEecC-CCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy12587 301 IEAMFCKRPVIAVNS-GGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNT 379 (390)
Q Consensus 301 ~Ea~a~G~pvi~~~~-~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
+|||+||+|||+++. ++.+|++.++ +|+++++|+++++++|.++++|++ .+++|++++++.. +.|+|+.+++.+.+
T Consensus 295 lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~d~~~la~~i~~ll~~~~-~~~~~~~~~~~~~-~~~~~~~i~~~~~~ 371 (375)
T 3beo_A 295 EEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGTDEETIFSLADELLSDKE-AHDKMSKASNPYG-DGRASERIVEAILK 371 (375)
T ss_dssp HHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCSCHHHHHHHHHHHHHCHH-HHHHHCCCCCTTC-CSCHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEecCCCCCceeecCC-ceEEcCCCHHHHHHHHHHHHhChH-hHhhhhhcCCCCC-CCcHHHHHHHHHHH
Confidence 999999999999965 8899999887 999996699999999999999998 9999999888776 78999999999888
Q ss_pred HHH
Q psy12587 380 IVN 382 (390)
Q Consensus 380 ~~~ 382 (390)
+++
T Consensus 372 ~~~ 374 (375)
T 3beo_A 372 HFN 374 (375)
T ss_dssp HTT
T ss_pred Hhh
Confidence 764
No 23
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.97 E-value=1.7e-29 Score=228.24 Aligned_cols=295 Identities=13% Similarity=0.080 Sum_probs=216.5
Q ss_pred CCCEEEEcccccchhHHHhh----cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHH
Q psy12587 76 KPDLVFCDLVSICIPILQAK----QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQ 151 (390)
Q Consensus 76 ~~Dvi~~~~~~~~~~~~~~~----~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 151 (390)
.-|+|++|++...+....+. ..++.+.+|-|.+.... ++.+- ...+.-....+-.+|.|.+.+...+..+.
T Consensus 149 ~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPfPs~e~----f~~Lp-~~~r~ell~gll~~DligF~t~~y~~~Fl 223 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADY----WRILP-KEIRTGILHGMLPATTIGFFADRWCRNFL 223 (496)
T ss_dssp SSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCCCCHHH----HTTSC-HHHHHHHHHHHTTSSEEEESSHHHHHHHH
T ss_pred CCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCCCCHHH----HhhCc-HhHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 46899999977654433332 28999999976432111 11110 00011112335689999999998887765
Q ss_pred HHhc----cCC-------------CCceeecCCCCCCCCCCCCCc---cchhhhcCCCCCCCCeEEEEeecccccCCHHH
Q psy12587 152 ATFR----SLD-------------HKCLDILYPSVYTEGLEKTTP---EPIENVLNPLPGKEDIVFLSINRYERKKNLEL 211 (390)
Q Consensus 152 ~~~~----~~~-------------~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ 211 (390)
+... +.+ ..++.++|+|||.+.|.+... ..+++.++ ++.+|+++||+.+.||++.
T Consensus 224 ~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~ 298 (496)
T 3t5t_A 224 ESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD-----GHRLVVHSGRTDPIKNAER 298 (496)
T ss_dssp HHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT-----TSEEEEEEEESSGGGCHHH
T ss_pred HHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC-----CceEEEEcccCccccCHHH
Confidence 5321 110 136789999999998876532 34455553 6788999999999999999
Q ss_pred HHHHHHHHHhhcccccccceEEEEEcCCCC-CCcchhHHHHHHHHHHHHcCC---CCcEEEecCCChHHHHHHHHhcceE
Q psy12587 212 AIYSLNSLRSRLSDEMKTHVKLVVAGGYDP-HNIENVEYYKELGVLVKKLKL---SDNVLFLTSPSDAAKISLFKFCHCI 287 (390)
Q Consensus 212 ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~-~~~~~~~y~~~~~~~~~~~~l---~~~v~~~g~~~~~e~~~~~~~adv~ 287 (390)
+|+|+ ++.+++|+ .. ++.|+++|.... ..++...+..++++++.+.+. ...|.|+|.++.+++..+|+.||++
T Consensus 299 lL~Af-~ll~~~P~-~~-~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~ 375 (496)
T 3t5t_A 299 AVRAF-VLAARGGG-LE-KTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLL 375 (496)
T ss_dssp HHHHH-HHHHHTSS-CT-TEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEE
T ss_pred HHHHH-HHHHhCcc-cc-eEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEE
Confidence 99999 98888875 11 367888874332 112234455666666665431 1169999999999999999999999
Q ss_pred EeCCCCCCCCccHHhhhhcC---CCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q psy12587 288 IYTPSNEHFGIVPIEAMFCK---RPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNR 363 (390)
Q Consensus 288 v~ps~~e~~~~~~~Ea~a~G---~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 363 (390)
++||..||||++++|||||| .|+|+|..+|..+.+ +.+|+++++ |+++++++|.++++++.++++++.++.++.
T Consensus 376 vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l--~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~ 453 (496)
T 3t5t_A 376 IFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVL--GEYCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDA 453 (496)
T ss_dssp EECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH--GGGSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred EECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh--CCCEEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999997 899999999888887 347899999 999999999999999875888888899999
Q ss_pred HhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 364 FNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
+ ..++...+++.+++-+.....
T Consensus 454 V-~~~d~~~W~~~fl~~L~~~~~ 475 (496)
T 3t5t_A 454 A-RPWTLEAWVQAQLDGLAADHA 475 (496)
T ss_dssp H-TTCBHHHHHHHHHHHHHHHHH
T ss_pred H-HHCCHHHHHHHHHHHHhhccc
Confidence 8 789999999999998876643
No 24
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.97 E-value=4.5e-31 Score=216.37 Aligned_cols=185 Identities=21% Similarity=0.291 Sum_probs=161.7
Q ss_pred cCCCCCCCCCC--CCC------ccchhhhcCCCCCCCCeEEEEeeccc-ccCCHHHHHHHHHHHH--hhcccccccceEE
Q psy12587 165 LYPSVYTEGLE--KTT------PEPIENVLNPLPGKEDIVFLSINRYE-RKKNLELAIYSLNSLR--SRLSDEMKTHVKL 233 (390)
Q Consensus 165 i~~~~~~~~~~--~~~------~~~~~~~~~~l~~~~~~~i~~~g~~~-~~K~~~~ll~a~~~l~--~~~~~~~~~~~~l 233 (390)
||||+|.+.|. +.. ....++.++ .. +..+|+++|++. +.||++.+++++..+. ++.++ ++|
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~~r~~~~--~~-~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~-----~~l 73 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKSLLSKFG--MD-EGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQE-----MRF 73 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHHHHHHTT--CC-SCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGG-----EEE
T ss_pred CCCccChhhccccccccchhhHHHHHHHHcC--CC-CCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCC-----eEE
Confidence 79999999988 665 445666664 22 455899999999 9999999999999997 67665 999
Q ss_pred EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE-ecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 234 VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF-LTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 234 ~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~-~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
+++|.++. .+.+++++.+++++ +|.+ +|+++++++..+|+.||++++||..|++|++++|||+||+|||+
T Consensus 74 ~i~G~~~~------~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~ 144 (200)
T 2bfw_A 74 IIIGKGDP------ELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 144 (200)
T ss_dssp EEECCBCH------HHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEE
T ss_pred EEECCCCh------HHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEE
Confidence 99998762 24488889998886 8999 99999999999999999999999999999999999999999999
Q ss_pred ecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHhhhcC
Q psy12587 313 VNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD-NDGNIIQQFSQFGFNRFNEKFS 369 (390)
Q Consensus 313 ~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 369 (390)
++.++..+++ ++.+|+++++ |+++++++|.++++ +++ .++++++++++.+.+ ||
T Consensus 145 ~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~~~~~-~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 145 SAVGGLRDII-TNETGILVKAGDPGELANAILKALELSRS-DLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp ESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHH-TC
T ss_pred eCCCChHHHc-CCCceEEecCCCHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHh-cC
Confidence 9999999999 8899999998 99999999999999 998 999999999999866 75
No 25
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.97 E-value=7.3e-30 Score=202.60 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=141.1
Q ss_pred CeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC
Q psy12587 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS 273 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~ 273 (390)
+++|+|+|++.+.||++.+++++..+++ .+ +++|+++|.++.. +.++++++++++ ++.+ |+++
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~-~~-----~~~l~i~G~g~~~--------~~~~~~~~~~~~--~v~~-g~~~ 64 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKY-KQ-----DIVLLLKGKGPDE--------KKIKLLAQKLGV--KAEF-GFVN 64 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTT-GG-----GEEEEEECCSTTH--------HHHHHHHHHHTC--EEEC-CCCC
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhcc-CC-----CeEEEEEeCCccH--------HHHHHHHHHcCC--eEEE-eecC
Confidence 5789999999999999999999999853 35 4999999998765 889999999986 8888 9999
Q ss_pred hHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCC-CEEE-ecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 274 DAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKR-PVIA-VNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 274 ~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~-pvi~-~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
++++..+|+.||++++||..|++|++++|||+||+ |||+ ++.++..+++.++.+ ++++ |+++++++|.+++++++
T Consensus 65 ~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~~~~~ 142 (166)
T 3qhp_A 65 SNELLEILKTCTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERS--LFEPNNAKDLSAKIDWWLENKL 142 (166)
T ss_dssp HHHHHHHHTTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGG--EECTTCHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHhCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCce--EEcCCCHHHHHHHHHHHHhCHH
Confidence 99999999999999999999999999999999998 9999 567889999877644 6777 99999999999999998
Q ss_pred hHHHHHHHHHHHHHhhhcCHHHHHHH
Q psy12587 351 NIIQQFSQFGFNRFNEKFSFQAFSIQ 376 (390)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (390)
.++++++++++.+ ++|+|+.++++
T Consensus 143 -~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 143 -ERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp -HHHHHHHHHHHHH-HHHC-------
T ss_pred -HHHHHHHHHHHHH-HHCChhhhhcC
Confidence 9999999999988 89999998763
No 26
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.96 E-value=1.1e-27 Score=214.47 Aligned_cols=296 Identities=10% Similarity=0.030 Sum_probs=203.9
Q ss_pred CCcchhhhHhh-HhhhhcCCceeec--CCcccc-ccC--CCcc--eEEeccccccccchhhHHHHHHHHHHHHHHHHHHh
Q psy12587 2 LGATARLTITA-TAWGATGPRTTAH--DHCFKE-TKD--GTLP--VKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWY 73 (390)
Q Consensus 2 ~GG~~~~~~~l-~~L~~~G~~V~~~--~~~~~~-~~~--~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (390)
.+|..+.+..| ++|.++| +|.+. +....+ ... .++. +. + +.. ....+. .++
T Consensus 49 s~G~~~~~~~L~~~L~~~~-~v~v~~~~~~~~~~~~~~~~~v~~~~~-~----p~~---~~~~l~------------~~l 107 (374)
T 2xci_A 49 SIGEFNTFLPILKELKREH-RILLTYFSPRAREYLKTKSDFYDCLHP-L----PLD---NPFSVK------------RFE 107 (374)
T ss_dssp SHHHHHHHHHHHHHHHHHS-CEEEEESCGGGHHHHHTTGGGCSEEEE-C----CCS---SHHHHH------------HHH
T ss_pred CHHHHHHHHHHHHHHHhcC-CEEEEEcCCcHHHHHHHhcccccceeE-C----CCC---CHHHHH------------HHH
Confidence 45778899999 9999998 87544 211111 011 1222 11 1 111 111111 234
Q ss_pred h-cCCCEEEEcccccchh-HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHH
Q psy12587 74 S-EKPDLVFCDLVSICIP-ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQ 151 (390)
Q Consensus 74 ~-~~~Dvi~~~~~~~~~~-~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 151 (390)
+ .+||+|+++....... +....+ |+++..+.... ..+.+++++.+|.++++|+..++.+.
T Consensus 108 ~~~~pDiv~~~~~~~~~~~~~~~~~-p~~~~~~~~~~-----------------~~~~~~~~~~~d~ii~~S~~~~~~l~ 169 (374)
T 2xci_A 108 ELSKPKALIVVEREFWPSLIIFTKV-PKILVNAYAKG-----------------SLIEKILSKKFDLIIMRTQEDVEKFK 169 (374)
T ss_dssp HHHCCSEEEEESCCCCHHHHHHCCS-CEEEEEECCCC-----------------CHHHHHHHTTCSEEEESCHHHHHHHH
T ss_pred HHhCCCEEEEECccCcHHHHHHHhC-CEEEEEeecCc-----------------hHHHHHHHHhCCEEEECCHHHHHHHH
Confidence 4 8999999865332222 222223 76654332100 01456778899999999999999998
Q ss_pred HHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccce
Q psy12587 152 ATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHV 231 (390)
Q Consensus 152 ~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~ 231 (390)
+. +. . ++.++||+. +...... ...+ ..+++++.|+ ..||++.+++|++.+.++.|+ +
T Consensus 170 ~~--g~-~-ki~vi~n~~----f~~~~~~--~~~l------~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~-----~ 226 (374)
T 2xci_A 170 TF--GA-K-RVFSCGNLK----FICQKGK--GIKL------KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSS-----L 226 (374)
T ss_dssp TT--TC-C-SEEECCCGG----GCCCCCS--CCCC------SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTT-----C
T ss_pred Hc--CC-C-eEEEcCCCc----cCCCcCh--hhhh------cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCC-----c
Confidence 75 44 3 899999973 1111100 1111 1245666665 458999999999999988875 9
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC--------CcEEEecCCChHHHHHHHHhcceEEeCCCC-CCCCccHHh
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLS--------DNVLFLTSPSDAAKISLFKFCHCIIYTPSN-EHFGIVPIE 302 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~--------~~v~~~g~~~~~e~~~~~~~adv~v~ps~~-e~~~~~~~E 302 (390)
+|+|+|+++.. .++++++++++++. ++|.+.|.. .|+..+|+.||++++||.. |++|.+++|
T Consensus 227 ~lvivG~g~~~-------~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~--~dl~~~y~~aDv~vl~ss~~e~gg~~~lE 297 (374)
T 2xci_A 227 KLILVPRHIEN-------AKIFEKKARDFGFKTSFFENLEGDVILVDRF--GILKELYPVGKIAIVGGTFVNIGGHNLLE 297 (374)
T ss_dssp EEEEEESSGGG-------HHHHHHHHHHTTCCEEETTCCCSSEEECCSS--SCHHHHGGGEEEEEECSSSSSSCCCCCHH
T ss_pred EEEEECCCHHH-------HHHHHHHHHHCCCceEEecCCCCcEEEECCH--HHHHHHHHhCCEEEECCcccCCCCcCHHH
Confidence 99999987643 14788999998876 468887765 4568999999998887654 678999999
Q ss_pred hhhcCCCEEEe-cCCCcccceecC-cceeeecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCH
Q psy12587 303 AMFCKRPVIAV-NSGGPKESVVDG-RTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSF 370 (390)
Q Consensus 303 a~a~G~pvi~~-~~~~~~e~i~~~-~~g~~~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (390)
|||||+|||++ +.++.+|++.+. .+|.+++. |+++++++|.++++| + .+++|++++++.+.++++.
T Consensus 298 AmA~G~PVI~~~~~~~~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll~d-~-~r~~mg~~ar~~~~~~~ga 366 (374)
T 2xci_A 298 PTCWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSV-K-KEIKVEEKSREIKGCYLEK 366 (374)
T ss_dssp HHTTTCCEEECSCCTTSHHHHHHHHHTTCEEECCSHHHHHHHHHHHHHS-C-CCCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCEEECCCccChHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHhH-H-HHHHHHHHHHHHHHhcccH
Confidence 99999999975 678889987653 47888877 999999999999999 8 9999999999998665443
No 27
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.95 E-value=7e-28 Score=192.94 Aligned_cols=150 Identities=33% Similarity=0.485 Sum_probs=135.5
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHH--HcCCCCcEEEec
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVK--KLKLSDNVLFLT 270 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~--~~~l~~~v~~~g 270 (390)
++++|+|+|++.+.||++.++++++.+ + +++|+++|.++.. +++++.++ +++++++|.++|
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l----~-----~~~l~i~G~~~~~--------~~l~~~~~~~~~~l~~~v~~~g 84 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL----Q-----DEKLYIVGWFSKG--------DHAERYARKIMKIAPDNVKFLG 84 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC----T-----TSCEEEEBCCCTT--------STHHHHHHHHHHHSCTTEEEEE
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC----C-----CcEEEEEecCccH--------HHHHHHHHhhhcccCCcEEEeC
Confidence 667789999999999999999999988 3 3899999998875 67888888 778889999999
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
+++++++..+|+.||++++||..|++|++++|||+||+|||+++.++..+++.++.+|+++ + |+++++++|.++++++
T Consensus 85 ~~~~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 85 SVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp SCCHHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999999999999999999999999 7 9999999999999998
Q ss_pred hhH-HHHHHHHHH
Q psy12587 350 GNI-IQQFSQFGF 361 (390)
Q Consensus 350 ~~~-~~~~~~~~~ 361 (390)
+ . +++++++++
T Consensus 164 ~-~~~~~~~~~a~ 175 (177)
T 2f9f_A 164 D-KFKKDCFRRAK 175 (177)
T ss_dssp T-TTHHHHHHHHH
T ss_pred H-HHHHHHHHHHh
Confidence 8 5 555554443
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.95 E-value=8.2e-27 Score=210.17 Aligned_cols=273 Identities=12% Similarity=0.045 Sum_probs=187.6
Q ss_pred Hhh-cCCCEEEEcccc-cch---hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhH
Q psy12587 72 WYS-EKPDLVFCDLVS-ICI---PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFT 146 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~-~~~---~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 146 (390)
+++ .+||+||+|+.. ..+ .+++..++|++.+.++...+. ....+ ......+++.+.+|.++++|+..
T Consensus 86 ~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~s~~~ 157 (376)
T 1v4v_A 86 ALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGN-----LKEPF---PEEANRRLTDVLTDLDFAPTPLA 157 (376)
T ss_dssp HHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCCSC-----TTSST---THHHHHHHHHHHCSEEEESSHHH
T ss_pred HHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCcccc-----ccCCC---chHHHHHHHHHHhceeeCCCHHH
Confidence 445 899999998642 222 233445589864333321110 00000 11123344556799999999999
Q ss_pred HHHHHHHhccCCCCceeecCCCC-CCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhccc
Q psy12587 147 KSVVQATFRSLDHKCLDILYPSV-YTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSD 225 (390)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~ 225 (390)
++.+.+. +.+.+++.+++|+. |...+... ....++.+ + +++++++++||+...||++.+++|++.+.++.++
T Consensus 158 ~~~l~~~--g~~~~ki~vi~n~~~d~~~~~~~-~~~~~~~~---~-~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~ 230 (376)
T 1v4v_A 158 KANLLKE--GKREEGILVTGQTGVDAVLLAAK-LGRLPEGL---P-EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPH 230 (376)
T ss_dssp HHHHHTT--TCCGGGEEECCCHHHHHHHHHHH-HCCCCTTC---C-SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHc--CCCcceEEEECCchHHHHhhhhh-hhHHHHhc---C-CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCC
Confidence 9998875 45467899999974 32211110 01111111 2 3567778899998888999999999999887775
Q ss_pred ccccceEEEEE-cCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhh
Q psy12587 226 EMKTHVKLVVA-GGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAM 304 (390)
Q Consensus 226 ~~~~~~~l~i~-G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~ 304 (390)
++++++ |.++ ...+.+++++.. .++|.++|+++..++..+|+.||++|+|| + |+ ++|||
T Consensus 231 -----~~lv~~~g~~~-------~~~~~l~~~~~~---~~~v~~~g~~g~~~~~~~~~~ad~~v~~S--~--g~-~lEA~ 290 (376)
T 1v4v_A 231 -----LTFVYPVHLNP-------VVREAVFPVLKG---VRNFVLLDPLEYGSMAALMRASLLLVTDS--G--GL-QEEGA 290 (376)
T ss_dssp -----SEEEEECCSCH-------HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHTEEEEEESC--H--HH-HHHHH
T ss_pred -----eEEEEECCCCH-------HHHHHHHHHhcc---CCCEEEECCCCHHHHHHHHHhCcEEEECC--c--CH-HHHHH
Confidence 888876 6442 122556655432 36899999998889999999999999998 2 33 78999
Q ss_pred hcCCCEEEec-CCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 305 FCKRPVIAVN-SGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 305 a~G~pvi~~~-~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
+||+|||+++ .++..+++.++ +|++++.|+++++++|.++++|++ .+++|++++ +.|.+...++++.+.+.+
T Consensus 291 a~G~PvI~~~~~~~~~~~~~~g-~g~lv~~d~~~la~~i~~ll~d~~-~~~~~~~~~-----~~~~~~~~~~~i~~~i~~ 363 (376)
T 1v4v_A 291 ALGVPVVVLRNVTERPEGLKAG-ILKLAGTDPEGVYRVVKGLLENPE-ELSRMRKAK-----NPYGDGKAGLMVARGVAW 363 (376)
T ss_dssp HTTCCEEECSSSCSCHHHHHHT-SEEECCSCHHHHHHHHHHHHTCHH-HHHHHHHSC-----CSSCCSCHHHHHHHHHHH
T ss_pred HcCCCEEeccCCCcchhhhcCC-ceEECCCCHHHHHHHHHHHHhChH-hhhhhcccC-----CCCCCChHHHHHHHHHHH
Confidence 9999999974 68888887654 788884599999999999999988 888888533 455555666677777766
Q ss_pred hhh
Q psy12587 384 MLD 386 (390)
Q Consensus 384 ~~~ 386 (390)
+++
T Consensus 364 ~~~ 366 (376)
T 1v4v_A 364 RLG 366 (376)
T ss_dssp HTT
T ss_pred Hhc
Confidence 654
No 29
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.93 E-value=4.5e-25 Score=192.87 Aligned_cols=242 Identities=13% Similarity=-0.002 Sum_probs=175.7
Q ss_pred cCCCEEEEcccccc---h---hHHHhh--cccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhH
Q psy12587 75 EKPDLVFCDLVSIC---I---PILQAK--QFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFT 146 (390)
Q Consensus 75 ~~~Dvi~~~~~~~~---~---~~~~~~--~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 146 (390)
.++|+|++++++.. + .+.+++ ++|+|+.+|+.++.... . .......|++++++||.|+++|+.+
T Consensus 73 ~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~-----~---~~~~~~~E~~~y~~aD~Ii~~S~~~ 144 (339)
T 3rhz_A 73 RHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFS-----G---NFYLMDRTIAYYNKADVVVAPSQKM 144 (339)
T ss_dssp CTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCG-----G---GGGGHHHHHHHHTTCSEEEESCHHH
T ss_pred CCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCc-----c---chhhHHHHHHHHHHCCEEEECCHHH
Confidence 89999999887531 1 222333 48999999987543211 1 1122347899999999999999999
Q ss_pred HHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccc
Q psy12587 147 KSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDE 226 (390)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~ 226 (390)
++.+.+. +.+..++.++++. +... +.+.. ...++++++|+|+++....+.. + .+
T Consensus 145 ~~~l~~~--G~~~~ki~~~~~~-~~~~--~~~~~---------~~~~~~~i~yaG~l~k~~~L~~-------l---~~-- 198 (339)
T 3rhz_A 145 IDKLRDF--GMNVSKTVVQGMW-DHPT--QAPMF---------PAGLKREIHFPGNPERFSFVKE-------W---KY-- 198 (339)
T ss_dssp HHHHHHT--TCCCSEEEECCSC-CCCC--CCCCC---------CCEEEEEEEECSCTTTCGGGGG-------C---CC--
T ss_pred HHHHHHc--CCCcCceeecCCC-CccC--ccccc---------ccCCCcEEEEeCCcchhhHHHh-------C---CC--
Confidence 9999885 4534566555432 2211 11000 1125678999999985322221 1 23
Q ss_pred cccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCC-------CCCCCcc
Q psy12587 227 MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS-------NEHFGIV 299 (390)
Q Consensus 227 ~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~-------~e~~~~~ 299 (390)
+++|+|+|+|+.. .++ +|.|+|+++.+|++.+++++|+.++... ...+|.+
T Consensus 199 ---~~~f~ivG~G~~~------------------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~K 256 (339)
T 3rhz_A 199 ---DIPLKVYTWQNVE------------------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYK 256 (339)
T ss_dssp ---SSCEEEEESCCCC------------------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHH
T ss_pred ---CCeEEEEeCCccc------------------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHH
Confidence 4999999999752 234 8999999999999999999898877511 1246899
Q ss_pred HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy12587 300 PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQL 377 (390)
Q Consensus 300 ~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (390)
++||||||+|||+++.++..+++.++.+|+.++ +.++++++|.++ +++ .+++|++++++.. +.++++.+.++.
T Consensus 257 l~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~~-~~~e~~~~i~~l--~~~-~~~~m~~na~~~a-~~~~~~~f~k~~ 329 (339)
T 3rhz_A 257 LGSFLAAGIPVIVQEGIANQELIENNGLGWIVK-DVEEAIMKVKNV--NED-EYIELVKNVRSFN-PILRKGFFTRRL 329 (339)
T ss_dssp HHHHHHHTCCEEEETTCTTTHHHHHHTCEEEES-SHHHHHHHHHHC--CHH-HHHHHHHHHHHHT-HHHHTTHHHHHH
T ss_pred HHHHHHcCCCEEEccChhHHHHHHhCCeEEEeC-CHHHHHHHHHHh--CHH-HHHHHHHHHHHHH-HHhhccHHHHHH
Confidence 999999999999999999999999999999998 889999999986 345 7899999998886 556666655443
No 30
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.90 E-value=2.4e-23 Score=187.58 Aligned_cols=272 Identities=14% Similarity=0.101 Sum_probs=179.1
Q ss_pred Hhh-cCCCEEEEcccccc-h---hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHH-hcCcceEEEccHh
Q psy12587 72 WYS-EKPDLVFCDLVSIC-I---PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWT-TCKADKIVVNSEF 145 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~~-~---~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ad~ii~~s~~ 145 (390)
+++ .+||+|++++.... + .+++..++|++...++...+.. +..+.....+.+ .+.+|.++++|+.
T Consensus 106 ~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~rs~~~---------~~~~~~~~~r~~~~~~a~~~~~~se~ 176 (396)
T 3dzc_A 106 VLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLRTGNI---------YSPWPEEGNRKLTAALTQYHFAPTDT 176 (396)
T ss_dssp HHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCCCSCT---------TSSTTHHHHHHHHHHTCSEEEESSHH
T ss_pred HHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCcccccc---------ccCCcHHHHHHHHHHhcCEEECCCHH
Confidence 344 99999999874332 2 2334445997643332211100 001111222333 5678999999999
Q ss_pred HHHHHHHHhccCCCCceeecCCCC-CCCCCCCCC-------ccchhhhcCCCCCCCCeEEEEeeccc-ccCCHHHHHHHH
Q psy12587 146 TKSVVQATFRSLDHKCLDILYPSV-YTEGLEKTT-------PEPIENVLNPLPGKEDIVFLSINRYE-RKKNLELAIYSL 216 (390)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~~~~-------~~~~~~~~~~l~~~~~~~i~~~g~~~-~~K~~~~ll~a~ 216 (390)
.++.+.+. +.+++++.+++|++ |...+.... ...+++.++-++.++++++++.+|.. ..|+++.+++|+
T Consensus 177 ~~~~l~~~--G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ll~A~ 254 (396)
T 3dzc_A 177 SRANLLQE--NYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFERICQAL 254 (396)
T ss_dssp HHHHHHHT--TCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHHHHH
T ss_pred HHHHHHHc--CCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHHHHHHHH
Confidence 99998875 55567899999964 322221111 02334444311233455666666643 457899999999
Q ss_pred HHHHhhcccccccceEEEEE-cCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCC
Q psy12587 217 NSLRSRLSDEMKTHVKLVVA-GGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEH 295 (390)
Q Consensus 217 ~~l~~~~~~~~~~~~~l~i~-G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~ 295 (390)
..+.++.|+ +.+++. |.++ ...+.+++. .+..++|.+.+++...++..+|+.||+++.+|
T Consensus 255 ~~l~~~~~~-----~~~v~~~g~~~-------~~~~~l~~~---~~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---- 315 (396)
T 3dzc_A 255 ITTAEQHPE-----CQILYPVHLNP-------NVREPVNKL---LKGVSNIVLIEPQQYLPFVYLMDRAHIILTDS---- 315 (396)
T ss_dssp HHHHHHCTT-----EEEEEECCBCH-------HHHHHHHHH---TTTCTTEEEECCCCHHHHHHHHHHCSEEEESC----
T ss_pred HHHHHhCCC-----ceEEEEeCCCh-------HHHHHHHHH---HcCCCCEEEeCCCCHHHHHHHHHhcCEEEECC----
Confidence 999887775 888875 4331 112333332 24457899999999889999999999999988
Q ss_pred CCccHHhhhhcCCCEEEe-cCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHH
Q psy12587 296 FGIVPIEAMFCKRPVIAV-NSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFS 374 (390)
Q Consensus 296 ~~~~~~Ea~a~G~pvi~~-~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (390)
|....|||++|+|+|++ +.++.+|.+++| .+++++.|++++++++.++++|++ .+++|++++. .|.....+
T Consensus 316 -Gg~~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~d~~~l~~ai~~ll~d~~-~~~~m~~~~~-----~~~~~~aa 387 (396)
T 3dzc_A 316 -GGIQEEAPSLGKPVLVMRETTERPEAVAAG-TVKLVGTNQQQICDALSLLLTDPQ-AYQAMSQAHN-----PYGDGKAC 387 (396)
T ss_dssp -SGGGTTGGGGTCCEEECCSSCSCHHHHHHT-SEEECTTCHHHHHHHHHHHHHCHH-HHHHHHTSCC-----TTCCSCHH
T ss_pred -ccHHHHHHHcCCCEEEccCCCcchHHHHcC-ceEEcCCCHHHHHHHHHHHHcCHH-HHHHHhhccC-----CCcCChHH
Confidence 34448999999999998 667778888776 567776589999999999999998 8888876543 34444445
Q ss_pred HHHHHHH
Q psy12587 375 IQLNTIV 381 (390)
Q Consensus 375 ~~~~~~~ 381 (390)
+++.+++
T Consensus 388 ~ri~~~l 394 (396)
T 3dzc_A 388 QRIADIL 394 (396)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.90 E-value=8.6e-22 Score=175.65 Aligned_cols=320 Identities=11% Similarity=0.012 Sum_probs=197.1
Q ss_pred cchhhhHhh-HhhhhcCCceeecCC--cc--ccccCCCcceEEeccc-cc-cccchhhHHHHHHHHHHHHHHHHHHhh-c
Q psy12587 4 ATARLTITA-TAWGATGPRTTAHDH--CF--KETKDGTLPVKVIGDW-LP-RNIFGKFYALCMYLRMIVIALYVAWYS-E 75 (390)
Q Consensus 4 G~~~~~~~l-~~L~~~G~~V~~~~~--~~--~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (390)
|.-.-+..+ ++|.++||+|++++. .. ......++++..++.. .+ ......+......++.+... ..+++ .
T Consensus 14 GHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~ 91 (365)
T 3s2u_A 14 GHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKSLFQA--LRVIRQL 91 (365)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGTCCEEECC--------------CHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 333446788 999999999988721 11 1223445666665321 11 11111222222222222211 13456 9
Q ss_pred CCCEEEEcccccchh---HHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHHHHHHH
Q psy12587 76 KPDLVFCDLVSICIP---ILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152 (390)
Q Consensus 76 ~~Dvi~~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~ 152 (390)
+||+|+++......+ ++++.++|++++-.+... ....+++.+.++.++...+..
T Consensus 92 ~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n~~~-----------------G~~nr~l~~~a~~v~~~~~~~------ 148 (365)
T 3s2u_A 92 RPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNAVA-----------------GTANRSLAPIARRVCEAFPDT------ 148 (365)
T ss_dssp CCSEEEECSSSTHHHHHHHHHHTTCCEEEEECSSSC-----------------CHHHHHHGGGCSEEEESSTTS------
T ss_pred CCCEEEEcCCcchHHHHHHHHHcCCCEEEEecchhh-----------------hhHHHhhccccceeeeccccc------
Confidence 999999988655443 345666998864433211 122345566788887765432
Q ss_pred HhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceE
Q psy12587 153 TFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVK 232 (390)
Q Consensus 153 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~ 232 (390)
++ ...+..++.|++..+.+...... .. ++.+...++++.|+....+..+.+.+++..+..... +.
T Consensus 149 -~~--~~~k~~~~g~pvr~~~~~~~~~~---~~---~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~------~~ 213 (365)
T 3s2u_A 149 -FP--ASDKRLTTGNPVRGELFLDAHAR---AP---LTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEIR------PA 213 (365)
T ss_dssp -SC--C---CEECCCCCCGGGCCCTTSS---CC---CTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTTTC------CE
T ss_pred -cc--CcCcEEEECCCCchhhccchhhh---cc---cCCCCcEEEEECCcCCccccchhhHHHHHhcccccc------eE
Confidence 11 14677888888877655432211 11 233455667777888777777888888888765433 44
Q ss_pred E-EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEE
Q psy12587 233 L-VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVI 311 (390)
Q Consensus 233 l-~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi 311 (390)
+ +++|.+.. +.+.+..++.+ .++.+.+++++. .++|+.||++|.-+ .++++.|+|++|+|+|
T Consensus 214 vi~~~G~~~~---------~~~~~~~~~~~--~~~~v~~f~~dm--~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~I 276 (365)
T 3s2u_A 214 IRHQAGRQHA---------EITAERYRTVA--VEADVAPFISDM--AAAYAWADLVICRA----GALTVSELTAAGLPAF 276 (365)
T ss_dssp EEEECCTTTH---------HHHHHHHHHTT--CCCEEESCCSCH--HHHHHHCSEEEECC----CHHHHHHHHHHTCCEE
T ss_pred EEEecCcccc---------ccccceecccc--cccccccchhhh--hhhhccceEEEecC----CcchHHHHHHhCCCeE
Confidence 4 44554432 66666667765 467888998764 78999999999644 3678999999999999
Q ss_pred EecCCCc--------ccceecCcceeeecC---CHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy12587 312 AVNSGGP--------KESVVDGRTGFLCES---NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTI 380 (390)
Q Consensus 312 ~~~~~~~--------~e~i~~~~~g~~~~~---~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
..+.+.. .+.+.+...|.+++. ++++++++|.++++|++ .+++|++++++.. .....+.+++.++++
T Consensus 277 lip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~-~~~~m~~~a~~~~-~~~aa~~ia~~i~~l 354 (365)
T 3s2u_A 277 LVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPE-TLRSMADQARSLA-KPEATRTVVDACLEV 354 (365)
T ss_dssp ECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTH-HHHHHHHHHHHTC-CTTHHHHHHHHHHHH
T ss_pred EeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHH-HHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 8775432 234555567888764 68999999999999999 9999999998876 455566666666655
Q ss_pred HH
Q psy12587 381 VN 382 (390)
Q Consensus 381 ~~ 382 (390)
.+
T Consensus 355 ar 356 (365)
T 3s2u_A 355 AR 356 (365)
T ss_dssp C-
T ss_pred Hc
Confidence 44
No 32
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.90 E-value=1.4e-22 Score=184.74 Aligned_cols=334 Identities=11% Similarity=0.015 Sum_probs=204.2
Q ss_pred CcchhhhHhh-HhhhhcCCceeec-CCcc-ccccCCCcceEEeccc------------ccc------ccchhhHHHHHHH
Q psy12587 3 GATARLTITA-TAWGATGPRTTAH-DHCF-KETKDGTLPVKVIGDW------------LPR------NIFGKFYALCMYL 61 (390)
Q Consensus 3 GG~~~~~~~l-~~L~~~G~~V~~~-~~~~-~~~~~~~~~i~~~~~~------------~~~------~~~~~~~~~~~~~ 61 (390)
+|....+..| ++|.++||+|+++ .... ......++.+..++.. ... .....+......+
T Consensus 31 ~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (412)
T 3otg_A 31 HGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKLGFEPVATGMPVFDGFLAALRIRFDTDSPEGLTPEQLSELPQIVF 110 (412)
T ss_dssp HHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCEEEECCCCHHHHHHHHHHHHHSCSCCTTCCHHHHTTSHHHHH
T ss_pred cccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHhcCCceeecCcccccchhhhhhhhhcccCCccCChhHhhHHHHHHH
Confidence 5666677889 9999999999998 2222 1223345555555320 000 0000011111111
Q ss_pred HHH----HHHHHHHHhh-cCCCEEEEccccc-chhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHH----
Q psy12587 62 RMI----VIALYVAWYS-EKPDLVFCDLVSI-CIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEW---- 131 (390)
Q Consensus 62 ~~~----~~~~~~~~~~-~~~Dvi~~~~~~~-~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 131 (390)
... .......+++ .+||+|+++.... +..+++..++|+|++.|+...+... ...+...+..+..+.
T Consensus 111 ~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~ 186 (412)
T 3otg_A 111 GRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTPDDL----TRSIEEEVRGLAQRLGLDL 186 (412)
T ss_dssp HTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCCSHH----HHHHHHHHHHHHHHTTCCC
T ss_pred hccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCchhh----hHHHHHHHHHHHHHcCCCC
Confidence 111 0111223455 8999999986432 3334455669999988875432211 111111111111111
Q ss_pred ----HhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhh--cCCCCCCCCeEEEEeecccc
Q psy12587 132 ----TTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENV--LNPLPGKEDIVFLSINRYER 205 (390)
Q Consensus 132 ----~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~i~~~g~~~~ 205 (390)
....+|.+++.++...+...+.+. .....+.+.+.+.. ...... . .+.+.+.++++.|++.
T Consensus 187 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~vlv~~G~~~- 253 (412)
T 3otg_A 187 PPGRIDGFGNPFIDIFPPSLQEPEFRAR---PRRHELRPVPFAEQ-------GDLPAWLSS--RDTARPLVYLTLGTSS- 253 (412)
T ss_dssp CSSCCGGGGCCEEECSCGGGSCHHHHTC---TTEEECCCCCCCCC-------CCCCGGGGG--SCTTSCEEEEECTTTT-
T ss_pred CcccccCCCCeEEeeCCHHhcCCcccCC---CCcceeeccCCCCC-------CCCCCcccc--ccCCCCEEEEEcCCCC-
Confidence 124678889888776665544322 11111112111110 001111 1 1334677888999986
Q ss_pred cCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCC-CCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc
Q psy12587 206 KKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDP-HNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC 284 (390)
Q Consensus 206 ~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~-~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 284 (390)
.++.+.+.+++..+.+. +.++++++++.. . +.++ .++++|.+.|+++ +.++|+.|
T Consensus 254 ~~~~~~~~~~~~~l~~~-------~~~~~~~~g~~~~~--------~~l~------~~~~~v~~~~~~~---~~~~l~~a 309 (412)
T 3otg_A 254 GGTVEVLRAAIDGLAGL-------DADVLVASGPSLDV--------SGLG------EVPANVRLESWVP---QAALLPHV 309 (412)
T ss_dssp CSCHHHHHHHHHHHHTS-------SSEEEEECCSSCCC--------TTCC------CCCTTEEEESCCC---HHHHGGGC
T ss_pred cCcHHHHHHHHHHHHcC-------CCEEEEEECCCCCh--------hhhc------cCCCcEEEeCCCC---HHHHHhcC
Confidence 67778888887777654 256666555433 2 2221 2468999999994 46899999
Q ss_pred ceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccceecCcceeeecC---CHHHHHHHHHHHhcCChhHHHHHH
Q psy12587 285 HCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVVDGRTGFLCES---NEEAFAKAMKKIVDNDGNIIQQFS 357 (390)
Q Consensus 285 dv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~~~~~g~~~~~---~~~~l~~~i~~l~~~~~~~~~~~~ 357 (390)
|++|.++ .+.+++|||++|+|+|+.+.++ ..+.+.+..+|++++. |+++++++|.++++|++ .+++++
T Consensus 310 d~~v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~-~~~~~~ 384 (412)
T 3otg_A 310 DLVVHHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEES-YRAGAR 384 (412)
T ss_dssp SEEEESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHH-HHHHHH
T ss_pred cEEEECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHH-HHHHHH
Confidence 9999765 3478999999999999976643 5677777778999875 78999999999999998 999999
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 358 QFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
+.+++.. +.++++.+++.+.+++.+
T Consensus 385 ~~~~~~~-~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 385 AVAAEIA-AMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHH-HSCCHHHHHTTHHHHHC-
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHhcc
Confidence 9888876 678999999999888754
No 33
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.89 E-value=9.7e-23 Score=183.72 Aligned_cols=271 Identities=15% Similarity=0.105 Sum_probs=178.9
Q ss_pred Hhh-cCCCEEEEcccc-cch---hHHHhhcccEEEEeecCCccccchhhhhhhhcccchhh-HHHHHhcCcceEEEccHh
Q psy12587 72 WYS-EKPDLVFCDLVS-ICI---PILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNK-LEEWTTCKADKIVVNSEF 145 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~-~~~---~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ad~ii~~s~~ 145 (390)
+++ .+||+|++++.. ..+ .+++..++|++ +++........ +..+-.. ....+-+.+|.++++|+.
T Consensus 109 ~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~-h~~aglrs~~~--------~~~~p~~~~r~~~~~~a~~~~~~se~ 179 (403)
T 3ot5_A 109 VIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLG-HVEAGLRTWNK--------YSPFPEEMNRQLTGVMADIHFSPTKQ 179 (403)
T ss_dssp HHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEE-EESCCCCCSCT--------TSSTTHHHHHHHHHHHCSEEEESSHH
T ss_pred HHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEE-EEECCcccccc--------ccCCcHHHHHHHHHHhcCEEECCCHH
Confidence 344 999999998743 222 23344558975 44432110000 0000011 122334458999999999
Q ss_pred HHHHHHHHhccCCCCceeecCCC-CCCCCCCCCC--ccchhhhcCCCCCCCCeEEEEeecccc-cCCHHHHHHHHHHHHh
Q psy12587 146 TKSVVQATFRSLDHKCLDILYPS-VYTEGLEKTT--PEPIENVLNPLPGKEDIVFLSINRYER-KKNLELAIYSLNSLRS 221 (390)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~vi~~~-~~~~~~~~~~--~~~~~~~~~~l~~~~~~~i~~~g~~~~-~K~~~~ll~a~~~l~~ 221 (390)
.++.+.+. +.+++++.+++|+ +|...+.... ....++. + .++++++++.||... .|+++.+++++..+.+
T Consensus 180 ~~~~l~~~--Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~---l-~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~ 253 (403)
T 3ot5_A 180 AKENLLAE--GKDPATIFVTGNTAIDALKTTVQKDYHHPILEN---L-GDNRLILMTAHRRENLGEPMQGMFEAVREIVE 253 (403)
T ss_dssp HHHHHHHT--TCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHS---C-TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCcccEEEeCCchHHHHHhhhhhhcchHHHHh---c-cCCCEEEEEeCcccccCcHHHHHHHHHHHHHH
Confidence 99999885 5657889999996 4433222111 1122222 2 235566777777643 4678999999999988
Q ss_pred hcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHH-cCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccH
Q psy12587 222 RLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKK-LKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVP 300 (390)
Q Consensus 222 ~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~-~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~ 300 (390)
+.|+ +.+++.+... ..+++.+++ ++..++|.+.++++..++..+|+.||+++.+| |...
T Consensus 254 ~~~~-----~~~v~~~~~~----------~~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-----Gg~~ 313 (403)
T 3ot5_A 254 SRED-----TELVYPMHLN----------PAVREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGVQ 313 (403)
T ss_dssp HCTT-----EEEEEECCSC----------HHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEEEEEECC-----HHHH
T ss_pred hCCC-----ceEEEecCCC----------HHHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHH
Confidence 8775 8888874321 223333333 34447899999999999999999999999887 3444
Q ss_pred HhhhhcCCCEEEe-cCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy12587 301 IEAMFCKRPVIAV-NSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNT 379 (390)
Q Consensus 301 ~Ea~a~G~pvi~~-~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
+||+++|+|+|++ +.++..|.++.| +|+++..|++++++++.+++++++ .+++|++++..+. +..+.+++++.+.+
T Consensus 314 ~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~d~~~l~~ai~~ll~~~~-~~~~m~~~~~~~g-~~~aa~rI~~~l~~ 390 (403)
T 3ot5_A 314 EEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGTNKENLIKEALDLLDNKE-SHDKMAQAANPYG-DGFAANRILAAIKS 390 (403)
T ss_dssp HHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCSCHHHHHHHHHHHHHCHH-HHHHHHHSCCTTC-CSCHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEecCCCcchhheeCC-cEEEcCCCHHHHHHHHHHHHcCHH-HHHHHHhhcCccc-CCcHHHHHHHHHHH
Confidence 8999999999998 667777887665 788876699999999999999998 8888876554432 34444544444444
Q ss_pred H
Q psy12587 380 I 380 (390)
Q Consensus 380 ~ 380 (390)
.
T Consensus 391 ~ 391 (403)
T 3ot5_A 391 H 391 (403)
T ss_dssp H
T ss_pred H
Confidence 3
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.87 E-value=4.7e-21 Score=175.60 Aligned_cols=340 Identities=12% Similarity=0.049 Sum_probs=195.1
Q ss_pred CcchhhhHhh-HhhhhcCCceeec-CCccc-cccCCCcceEEecccccccc------chhhHH-HHHHHH---HHHHHHH
Q psy12587 3 GATARLTITA-TAWGATGPRTTAH-DHCFK-ETKDGTLPVKVIGDWLPRNI------FGKFYA-LCMYLR---MIVIALY 69 (390)
Q Consensus 3 GG~~~~~~~l-~~L~~~G~~V~~~-~~~~~-~~~~~~~~i~~~~~~~~~~~------~~~~~~-~~~~~~---~~~~~~~ 69 (390)
+|.......+ ++|.++||+|+++ ..... .....++.+..++...+... ...+.. +..+.. ..... .
T Consensus 18 ~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 96 (430)
T 2iyf_A 18 HGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGPDADPEAWGSTLLDNVEPFLNDAIQALPQ-L 96 (430)
T ss_dssp HHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTSCEEEECCCCSCCTTSCGGGGCSSHHHHHHHHHHHHHHHHHH-H
T ss_pred CccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHhCCCEEEEcCCcCccccccccccchhhHHHHHHHHHHHHHHHHH-H
Confidence 4666778899 9999999999998 22221 22334455554433211110 001111 111111 11111 2
Q ss_pred HHHhh-cCCCEEEEcccc-cchhHHHhhcccEEEEeecCCccccchh-------------hhhhhhcccchhhHHHH---
Q psy12587 70 VAWYS-EKPDLVFCDLVS-ICIPILQAKQFKVLFYCHYPDQLLSKQG-------------SFLKSIYRFPLNKLEEW--- 131 (390)
Q Consensus 70 ~~~~~-~~~Dvi~~~~~~-~~~~~~~~~~~~~v~~~h~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~--- 131 (390)
..+++ .+||+|+++... .+..+++..++|+|.+.++......... .....+...+...+.+.
T Consensus 97 ~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 176 (430)
T 2iyf_A 97 ADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFEAWLKENGIT 176 (430)
T ss_dssp HHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHHHHHSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccccchhhhhccchHHHHHHHHHHHHHHHhCCC
Confidence 23555 899999987642 2334455566999988865431110000 00000000011111111
Q ss_pred -----HhcCcceEEEccHhHHHHHHHHhccCCCCc-eeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccc
Q psy12587 132 -----TTCKADKIVVNSEFTKSVVQATFRSLDHKC-LDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYER 205 (390)
Q Consensus 132 -----~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~ 205 (390)
.+..+|.+++.+....+.... .. ..+ +..++++++...... .... -..+++++++++|++.
T Consensus 177 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~-~~~~v~~vG~~~~~~~~~~----~~~~----~~~~~~~v~v~~Gs~~- 243 (430)
T 2iyf_A 177 EHPDTFASHPPRSLVLIPKALQPHAD---RV-DEDVYTFVGACQGDRAEEG----GWQR----PAGAEKVVLVSLGSAF- 243 (430)
T ss_dssp SCHHHHHHCCSSEEECSCGGGSTTGG---GS-CTTTEEECCCCC-----CC----CCCC----CTTCSEEEEEECTTTC-
T ss_pred CCHHHHhcCCCcEEEeCcHHhCCCcc---cC-CCccEEEeCCcCCCCCCCC----CCcc----ccCCCCeEEEEcCCCC-
Confidence 222578888887655432211 12 234 667776554211000 0000 0123567888999988
Q ss_pred cCCHHHHHHHHHHHHhhcccccccceEE-EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc
Q psy12587 206 KKNLELAIYSLNSLRSRLSDEMKTHVKL-VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC 284 (390)
Q Consensus 206 ~K~~~~ll~a~~~l~~~~~~~~~~~~~l-~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 284 (390)
.++.+.+.+++..+.+. + ++++ +++|.+... +.++ .++++|.+.|++++. ++|+.|
T Consensus 244 ~~~~~~~~~~~~~l~~~-~-----~~~~~~~~G~~~~~--------~~l~------~~~~~v~~~~~~~~~---~~l~~a 300 (430)
T 2iyf_A 244 TKQPAFYRECVRAFGNL-P-----GWHLVLQIGRKVTP--------AELG------ELPDNVEVHDWVPQL---AILRQA 300 (430)
T ss_dssp C-CHHHHHHHHHHHTTC-T-----TEEEEEECC---CG--------GGGC------SCCTTEEEESSCCHH---HHHTTC
T ss_pred CCcHHHHHHHHHHHhcC-C-----CeEEEEEeCCCCCh--------HHhc------cCCCCeEEEecCCHH---HHhhcc
Confidence 55555555555555332 2 2666 577876542 2221 246789999999876 689999
Q ss_pred ceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccceecCcceeeecC---CHHHHHHHHHHHhcCChhHHHHHH
Q psy12587 285 HCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVVDGRTGFLCES---NEEAFAKAMKKIVDNDGNIIQQFS 357 (390)
Q Consensus 285 dv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~~~~~g~~~~~---~~~~l~~~i~~l~~~~~~~~~~~~ 357 (390)
|++|..+ .+++++|||++|+|+|+++..+ ..+.+.+.+.|+.++. ++++++++|.++++|++ .+++++
T Consensus 301 d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~ 375 (430)
T 2iyf_A 301 DLFVTHA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPE-VARRLR 375 (430)
T ss_dssp SEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHH-HHHHHH
T ss_pred CEEEECC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHH-HHHHHH
Confidence 9999754 2368999999999999998654 3555666678888864 78999999999999988 888998
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHhhh
Q psy12587 358 QFGFNRFNEKFSFQAFSIQLNTIVNNML 385 (390)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (390)
+.+++.. +.++++..++.+.+++++..
T Consensus 376 ~~~~~~~-~~~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 376 RIQAEMA-QEGGTRRAADLIEAELPARH 402 (430)
T ss_dssp HHHHHHH-HHCHHHHHHHHHHTTSCC--
T ss_pred HHHHHHH-hcCcHHHHHHHHHHHhhccc
Confidence 8888776 56788888888887766543
No 35
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.83 E-value=1.8e-20 Score=169.61 Aligned_cols=162 Identities=13% Similarity=0.114 Sum_probs=123.1
Q ss_pred CCCeEEEEeecccccCCH-HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 192 KEDIVFLSINRYERKKNL-ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~K~~-~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
+++.++++.|+....++. ..+++++.+. .+.|+ ++++++|++... +.+. +++++|.+.|
T Consensus 217 ~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~-----~~~v~~~~~~~~--------~~l~------~~~~~v~~~~ 276 (391)
T 3tsa_A 217 SARRVCICMGRMVLNATGPAPLLRAVAAA-TELPG-----VEAVIAVPPEHR--------ALLT------DLPDNARIAE 276 (391)
T ss_dssp SSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTT-----EEEEEECCGGGG--------GGCT------TCCTTEEECC
T ss_pred CCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCC-----eEEEEEECCcch--------hhcc------cCCCCEEEec
Confidence 356777888998665444 7777777777 66654 899999876432 2221 3468999999
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC----CCcccceecCcceeeecC-----CHHHHHHH
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS----GGPKESVVDGRTGFLCES-----NEEAFAKA 341 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~----~~~~e~i~~~~~g~~~~~-----~~~~l~~~ 341 (390)
+++.. +++..||++|..+ .+.+++|||++|+|+|+.+. .+..+.+.+...|..++. ++++++++
T Consensus 277 ~~~~~---~ll~~ad~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~a 349 (391)
T 3tsa_A 277 SVPLN---LFLRTCELVICAG----GSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDS 349 (391)
T ss_dssp SCCGG---GTGGGCSEEEECC----CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHH
T ss_pred cCCHH---HHHhhCCEEEeCC----CHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHH
Confidence 99876 4679999999643 45689999999999999654 344566777778988863 79999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 342 MKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 342 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+.++++|+. .++++++.+++.. +..+++..++.+.+++.
T Consensus 350 i~~ll~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 350 IATVLGDTG-FAAAAIKLSDEIT-AMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHTCTH-HHHHHHHHHHHHH-TSCCHHHHHHHHHHC--
T ss_pred HHHHHcCHH-HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 999999999 9999988887775 78899888887766543
No 36
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.83 E-value=3.9e-20 Score=167.71 Aligned_cols=154 Identities=13% Similarity=0.061 Sum_probs=106.1
Q ss_pred CCCeEEEEeecccccC----------CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcC
Q psy12587 192 KEDIVFLSINRYERKK----------NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLK 261 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~K----------~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~ 261 (390)
+.+.+++++|++...+ .+..+++++..+ ++++++++++... +.+. .
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~----------~~~~v~~~~~~~~--------~~l~------~ 281 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL----------GFEVVVAVSDKLA--------QTLQ------P 281 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG----------TCEEEECCCC----------------------
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC----------CCEEEEEeCCcch--------hhhc------c
Confidence 4677888899996544 345555555433 2778888876532 3332 2
Q ss_pred CCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC----CCcccceecCcceeeecC---C
Q psy12587 262 LSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS----GGPKESVVDGRTGFLCES---N 334 (390)
Q Consensus 262 l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~----~~~~e~i~~~~~g~~~~~---~ 334 (390)
++++|.+.|+++. .++|..||++|..+ .+.+++|||++|+|+|+.+. .+..+.+.+.+.|+.++. +
T Consensus 282 ~~~~v~~~~~~~~---~~ll~~ad~~v~~g----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~ 354 (398)
T 4fzr_A 282 LPEGVLAAGQFPL---SAIMPACDVVVHHG----GHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAG 354 (398)
T ss_dssp CCTTEEEESCCCH---HHHGGGCSEEEECC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-----
T ss_pred CCCcEEEeCcCCH---HHHHhhCCEEEecC----CHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCC
Confidence 3689999999964 47899999999643 46789999999999999544 456677778889999864 6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy12587 335 EEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLN 378 (390)
Q Consensus 335 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (390)
+++++++|.++++|+. .++++++.+++.. +..+++.+++.+.
T Consensus 355 ~~~l~~ai~~ll~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 355 VESVLAACARIRDDSS-YVGNARRLAAEMA-TLPTPADIVRLIE 396 (398)
T ss_dssp --CHHHHHHHHHHCTH-HHHHHHHHHHHHT-TSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCHH-HHHHHHHHHHHHH-cCCCHHHHHHHHh
Confidence 8899999999999999 9999998888876 7889998887664
No 37
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.81 E-value=9.7e-19 Score=158.79 Aligned_cols=336 Identities=13% Similarity=0.053 Sum_probs=187.3
Q ss_pred cchhhhHhh-HhhhhcCCceeec-CCcc-ccccCCCcceEEeccccccc-------cchhhHHHHH-HHHH---HHHHHH
Q psy12587 4 ATARLTITA-TAWGATGPRTTAH-DHCF-KETKDGTLPVKVIGDWLPRN-------IFGKFYALCM-YLRM---IVIALY 69 (390)
Q Consensus 4 G~~~~~~~l-~~L~~~G~~V~~~-~~~~-~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~-~~~~---~~~~~~ 69 (390)
|.-..+..| ++|.++||+|+++ +... ......++.+..+....+.. .......+.. +... .....
T Consensus 16 Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 94 (402)
T 3ia7_A 16 GHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLHLVYVRENVAILRAA- 94 (402)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHcCCEEEecccccccccccccccccchHHHHHHHHHHHHHHHHHHH-
Confidence 555667788 9999999999998 2221 22233445555554221110 0011111111 1111 11112
Q ss_pred HHHhh-cCCCEEEEcc-cc-cchhHHHhhcccEEEEeecCCccccchh--hhhhh-------hcccchhhHHH-------
Q psy12587 70 VAWYS-EKPDLVFCDL-VS-ICIPILQAKQFKVLFYCHYPDQLLSKQG--SFLKS-------IYRFPLNKLEE------- 130 (390)
Q Consensus 70 ~~~~~-~~~Dvi~~~~-~~-~~~~~~~~~~~~~v~~~h~~~~~~~~~~--~~~~~-------~~~~~~~~~~~------- 130 (390)
..+++ .+||+|++++ .. .+..+++..++|++.+.|+...+..... ..... ........+..
T Consensus 95 ~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 174 (402)
T 3ia7_A 95 EEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPADVEAVHSVLVDLLGKYGV 174 (402)
T ss_dssp HHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGGGSHHHHHHHHHHHHTTTC
T ss_pred HHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCccccccccccccccccChhhHHHHHHHHHHHHHHcCC
Confidence 23455 8999999983 22 2333445556999988875443211111 00000 00000011111
Q ss_pred -----HHhcCc-ceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccc
Q psy12587 131 -----WTTCKA-DKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYE 204 (390)
Q Consensus 131 -----~~~~~a-d~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~ 204 (390)
.+.... |..++..+...+.....+ ..++.++.+.+....... .... ...+.+.++++.|+..
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~vGp~~~~~~~~~-------~~~~-~~~~~~~v~v~~G~~~ 242 (402)
T 3ia7_A 175 DTPVKEYWDEIEGLTIVFLPKSFQPFAETF----DERFAFVGPTLTGRDGQP-------GWQP-PRPDAPVLLVSLGNQF 242 (402)
T ss_dssp CSCHHHHHTCCCSCEEESSCGGGSTTGGGC----CTTEEECCCCCCC----C-------CCCC-SSTTCCEEEEECCSCS
T ss_pred CCChhhhhcCCCCeEEEEcChHhCCccccC----CCCeEEeCCCCCCcccCC-------CCcc-cCCCCCEEEEECCCCC
Confidence 111112 555555544333222211 234555544332111000 0000 0223667888999987
Q ss_pred ccCCHHHHHHHHHHHHhhcccccccceEEEE-EcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh
Q psy12587 205 RKKNLELAIYSLNSLRSRLSDEMKTHVKLVV-AGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF 283 (390)
Q Consensus 205 ~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i-~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ 283 (390)
..+ .+.+..++..+.+. + +++++ +|.+... +.++ .++++|.+.|++++. ++|+.
T Consensus 243 ~~~-~~~~~~~~~~~~~~-~------~~~~~~~g~~~~~--------~~~~------~~~~~v~~~~~~~~~---~ll~~ 297 (402)
T 3ia7_A 243 NEH-PEFFRACAQAFADT-P------WHVVMAIGGFLDP--------AVLG------PLPPNVEAHQWIPFH---SVLAH 297 (402)
T ss_dssp SCC-HHHHHHHHHHHTTS-S------CEEEEECCTTSCG--------GGGC------SCCTTEEEESCCCHH---HHHTT
T ss_pred cch-HHHHHHHHHHHhcC-C------cEEEEEeCCcCCh--------hhhC------CCCCcEEEecCCCHH---HHHhh
Confidence 554 23333333333322 2 44444 5654332 2221 146899999999887 79999
Q ss_pred cceEEeCCCCCCCCccHHhhhhcCCCEEEecC-----CCcccceecCcceeeecC---CHHHHHHHHHHHhcCChhHHHH
Q psy12587 284 CHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS-----GGPKESVVDGRTGFLCES---NEEAFAKAMKKIVDNDGNIIQQ 355 (390)
Q Consensus 284 adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~-----~~~~e~i~~~~~g~~~~~---~~~~l~~~i~~l~~~~~~~~~~ 355 (390)
||++|..+ ...+++|||++|+|+|+.+. ....+.+.+.+.|..++. +++++++++.++++|++ .+++
T Consensus 298 ad~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~-~~~~ 372 (402)
T 3ia7_A 298 ARACLTHG----TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSA-VRER 372 (402)
T ss_dssp EEEEEECC----CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHH-HHHH
T ss_pred CCEEEECC----CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHH-HHHH
Confidence 99999755 23688999999999996554 345566677778888864 78999999999999998 8888
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 356 FSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
+++.+.+.. +..+++..++.+.+++.+
T Consensus 373 ~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 373 VRRMQRDIL-SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hCChHHHHHHHHHHHHhh
Confidence 888777765 678888888888887764
No 38
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.80 E-value=2.4e-18 Score=155.91 Aligned_cols=325 Identities=11% Similarity=0.032 Sum_probs=185.1
Q ss_pred CcchhhhHhh-HhhhhcCCceeecCCccc-cccCCCcceEEecccc-----------------------ccccchhhHHH
Q psy12587 3 GATARLTITA-TAWGATGPRTTAHDHCFK-ETKDGTLPVKVIGDWL-----------------------PRNIFGKFYAL 57 (390)
Q Consensus 3 GG~~~~~~~l-~~L~~~G~~V~~~~~~~~-~~~~~~~~i~~~~~~~-----------------------~~~~~~~~~~~ 57 (390)
+|....+..| ++|.++||+|+++..... .....++.+..++... +......+...
T Consensus 31 ~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (398)
T 3oti_A 31 IGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAIDLEEWGVQ 110 (398)
T ss_dssp HHHHGGGHHHHHHHHHTTCEEEEEESSCHHHHHTTTCEEEESSTTCCHHHHHHHHHHHCHHHHHTGGGSCCCSGGGGHHH
T ss_pred cchHhHHHHHHHHHHHCCCEEEEeccchHHHHHhCCCeeEecCCccCHHHHhhhcccCCccccccccCChhhhHHHHHHH
Confidence 3555667889 999999999999833221 1233455555543210 00001111111
Q ss_pred -HHHHHHHHHHHHHHHhh-cCCCEEEEcccc-cchhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHh-
Q psy12587 58 -CMYLRMIVIALYVAWYS-EKPDLVFCDLVS-ICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTT- 133 (390)
Q Consensus 58 -~~~~~~~~~~~~~~~~~-~~~Dvi~~~~~~-~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 133 (390)
..........+ ..+++ .+||+|+++... .+..+++..++|++.+.+++...... .......+...+.+..+
T Consensus 111 ~~~~~~~~~~~l-~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~ 185 (398)
T 3oti_A 111 IAAVNRPLVDGT-MALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGM----HRSIASFLTDLMDKHQVS 185 (398)
T ss_dssp HHHHHGGGHHHH-HHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCCTTH----HHHHHTTCHHHHHHTTCC
T ss_pred HHHHHHHHHHHH-HHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCccch----hhHHHHHHHHHHHHcCCC
Confidence 11111111111 23455 899999986432 23445566679999888765332111 11111111122222211
Q ss_pred -cCcceEEEccHhHHHHHHHHhccCCCCceeecC-CCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccccc-CCHH
Q psy12587 134 -CKADKIVVNSEFTKSVVQATFRSLDHKCLDILY-PSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERK-KNLE 210 (390)
Q Consensus 134 -~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~-K~~~ 210 (390)
...+..+..++....... .....++..+| ++ .......+. ...+.+.++++.|++... ++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~-~~~~~~~v~v~~G~~~~~~~~~~ 250 (398)
T 3oti_A 186 LPEPVATIESFPPSLLLEA----EPEGWFMRWVPYGG----------GAVLGDRLP-PVPARPEVAITMGTIELQAFGIG 250 (398)
T ss_dssp CCCCSEEECSSCGGGGTTS----CCCSBCCCCCCCCC----------CEECCSSCC-CCCSSCEEEECCTTTHHHHHCGG
T ss_pred CCCCCeEEEeCCHHHCCCC----CCCCCCccccCCCC----------CcCCchhhh-cCCCCCEEEEEcCCCccccCcHH
Confidence 123444444432211000 00011222222 11 011111111 023467888899998654 3555
Q ss_pred HHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeC
Q psy12587 211 LAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYT 290 (390)
Q Consensus 211 ~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~p 290 (390)
.+.+++..+.+. ++++++++++... +.+. +++++|.+.|+++.. ++|..||++|..
T Consensus 251 ~~~~~~~~l~~~-------~~~~v~~~g~~~~--------~~l~------~~~~~v~~~~~~~~~---~ll~~ad~~v~~ 306 (398)
T 3oti_A 251 AVEPIIAAAGEV-------DADFVLALGDLDI--------SPLG------TLPRNVRAVGWTPLH---TLLRTCTAVVHH 306 (398)
T ss_dssp GHHHHHHHHHTS-------SSEEEEECTTSCC--------GGGC------SCCTTEEEESSCCHH---HHHTTCSEEEEC
T ss_pred HHHHHHHHHHcC-------CCEEEEEECCcCh--------hhhc------cCCCcEEEEccCCHH---HHHhhCCEEEEC
Confidence 566666655543 2788888877543 2222 346899999999644 689999999964
Q ss_pred CCCCCCCccHHhhhhcCCCEEE----ecCCCcc--cceecCcceeeecC---CHHHHHHHHHHHhcCChhHHHHHHHHHH
Q psy12587 291 PSNEHFGIVPIEAMFCKRPVIA----VNSGGPK--ESVVDGRTGFLCES---NEEAFAKAMKKIVDNDGNIIQQFSQFGF 361 (390)
Q Consensus 291 s~~e~~~~~~~Ea~a~G~pvi~----~~~~~~~--e~i~~~~~g~~~~~---~~~~l~~~i~~l~~~~~~~~~~~~~~~~ 361 (390)
+.+.+++|||++|+|+|+ .+..+.. +.+.+...|+.++. +++.++ ++++|+. .++++++.++
T Consensus 307 ----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~~~-~~~~~~~~~~ 377 (398)
T 3oti_A 307 ----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGDES-LRTAAREVRE 377 (398)
T ss_dssp ----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHCHH-HHHHHHHHHH
T ss_pred ----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcCHH-HHHHHHHHHH
Confidence 345789999999999999 4556777 88888888998864 455554 8888988 8999988887
Q ss_pred HHHhhhcCHHHHHHHHHHHH
Q psy12587 362 NRFNEKFSFQAFSIQLNTIV 381 (390)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~ 381 (390)
+.. +..+++.+++.+.+++
T Consensus 378 ~~~-~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 378 EMV-ALPTPAETVRRIVERI 396 (398)
T ss_dssp HHH-TSCCHHHHHHHHHHHH
T ss_pred HHH-hCCCHHHHHHHHHHHh
Confidence 775 7889999988887764
No 39
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.79 E-value=1.1e-18 Score=155.71 Aligned_cols=269 Identities=16% Similarity=0.134 Sum_probs=175.4
Q ss_pred Hhh-cCCCEEEEccccc-c--hhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHH-HhcCcceEEEccHhH
Q psy12587 72 WYS-EKPDLVFCDLVSI-C--IPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEW-TTCKADKIVVNSEFT 146 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~-~--~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~ii~~s~~~ 146 (390)
+++ .+||+|++++... . ..+++..++|++ +++..... ... .+-....+. +-+.+|.++++|+..
T Consensus 89 ~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~-h~eaglrs------~~~----~~pee~nR~~~~~~a~~~~~~te~~ 157 (385)
T 4hwg_A 89 VLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIF-HMEAGNRC------FDQ----RVPEEINRKIIDHISDVNITLTEHA 157 (385)
T ss_dssp HHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEE-EESCCCCC------SCT----TSTHHHHHHHHHHHCSEEEESSHHH
T ss_pred HHHhcCCcEEEEECCchHHHHHHHHHHhCCCEE-EEeCCCcc------ccc----cCcHHHHHHHHHhhhceeecCCHHH
Confidence 344 9999999987332 2 223344459964 44432110 000 011112222 235689999999999
Q ss_pred HHHHHHHhccCCCCceeecCCCC-CCCCCC--CCCccchhhhcCCCCCCCCeEEEEeeccc---ccCCHHHHHHHHHHHH
Q psy12587 147 KSVVQATFRSLDHKCLDILYPSV-YTEGLE--KTTPEPIENVLNPLPGKEDIVFLSINRYE---RKKNLELAIYSLNSLR 220 (390)
Q Consensus 147 ~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~~~g~~~---~~K~~~~ll~a~~~l~ 220 (390)
++.+.+. +.+++++.+++|+. |..... .......++.++ ++. +++++++.||.+ ..+++..+++++..+.
T Consensus 158 ~~~l~~~--G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lg-l~~-~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~ 233 (385)
T 4hwg_A 158 RRYLIAE--GLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLS-LTP-KQYFLISSHREENVDVKNNLKELLNSLQMLI 233 (385)
T ss_dssp HHHHHHT--TCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTT-CCT-TSEEEEEECCC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHc--CCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcC-CCc-CCEEEEEeCCchhcCcHHHHHHHHHHHHHHH
Confidence 9998886 56577899999864 422211 112234555554 333 567777777753 3367889999999987
Q ss_pred hhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHc-C-C--CCcEEEecCCChHHHHHHHHhcceEEeCCCCCCC
Q psy12587 221 SRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKL-K-L--SDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHF 296 (390)
Q Consensus 221 ~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~-~-l--~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~ 296 (390)
++. + +.+++... +.+.+.++++ + + .++|.+.+.+++.++..+|+.||+++.+|
T Consensus 234 ~~~-~-----~~vv~p~~------------p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S----- 290 (385)
T 4hwg_A 234 KEY-N-----FLIIFSTH------------PRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS----- 290 (385)
T ss_dssp HHH-C-----CEEEEEEC------------HHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC-----
T ss_pred hcC-C-----eEEEEECC------------hHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC-----
Confidence 653 3 66665432 3345555554 3 2 36899999999999999999999999766
Q ss_pred CccHHhhhhcCCCEEEecCC-CcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHH-HhhhcCHHHHH
Q psy12587 297 GIVPIEAMFCKRPVIAVNSG-GPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNR-FNEKFSFQAFS 374 (390)
Q Consensus 297 ~~~~~Ea~a~G~pvi~~~~~-~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 374 (390)
|....||+++|+|+|+.+.. +.+|.++.| ++.++..|.+++++++.++++++. .++.|++++..+ . +..+.++++
T Consensus 291 Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~d~~~i~~ai~~ll~d~~-~~~~m~~~~~~~~g-~g~aa~rI~ 367 (385)
T 4hwg_A 291 GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSGFKAERVLQAVKTITEEHD-NNKRTQGLVPDYNE-AGLVSKKIL 367 (385)
T ss_dssp TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECCSSHHHHHHHHHHHHTTCB-TTBCCSCCCHHHHT-CCCHHHHHH
T ss_pred ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcCCCHHHHHHHHHHHHhChH-HHHHhhccCCCCCC-CChHHHHHH
Confidence 55679999999999997653 356777665 667775599999999999999988 776665544443 2 445555565
Q ss_pred HHHHHHH
Q psy12587 375 IQLNTIV 381 (390)
Q Consensus 375 ~~~~~~~ 381 (390)
+.+.+.+
T Consensus 368 ~~l~~~~ 374 (385)
T 4hwg_A 368 RIVLSYV 374 (385)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 40
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.77 E-value=2.6e-17 Score=150.04 Aligned_cols=161 Identities=11% Similarity=0.081 Sum_probs=113.2
Q ss_pred CCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEE-EcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 192 KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVV-AGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i-~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
+.+.++++.|+..... .+.+..++..+. ..+ +++++ +|.+... +.++ .++++|.+.+
T Consensus 246 ~~~~v~v~~Gs~~~~~-~~~~~~~~~al~-~~~------~~~v~~~g~~~~~--------~~l~------~~~~~v~~~~ 303 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDR-PGFFRDCARAFD-GQP------WHVVMTLGGQVDP--------AALG------DLPPNVEAHR 303 (415)
T ss_dssp CCCEEEEECTTTSCCC-HHHHHHHHHHHT-TSS------CEEEEECTTTSCG--------GGGC------CCCTTEEEES
T ss_pred CCCEEEEECCCCCCCh-HHHHHHHHHHHh-cCC------cEEEEEeCCCCCh--------HHhc------CCCCcEEEEe
Confidence 4677888889876443 223333333332 222 56655 5654332 2221 2467999999
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC----CCcccceecCcceeeecC---CHHHHHHHHH
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS----GGPKESVVDGRTGFLCES---NEEAFAKAMK 343 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~----~~~~e~i~~~~~g~~~~~---~~~~l~~~i~ 343 (390)
++++. ++|..||++|..+ ...+++|||++|+|+|+.+. ....+.+.+.+.|..++. +++++++++.
T Consensus 304 ~~~~~---~ll~~ad~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~ 376 (415)
T 3rsc_A 304 WVPHV---KVLEQATVCVTHG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVG 376 (415)
T ss_dssp CCCHH---HHHHHEEEEEESC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHH
T ss_pred cCCHH---HHHhhCCEEEECC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHH
Confidence 99876 7899999999754 23688999999999999543 334556666667877754 7899999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHh
Q psy12587 344 KIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
++++|++ .++++++.+.+.. +..+++..++.+.+++.+
T Consensus 377 ~ll~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 377 AVAADPA-LLARVEAMRGHVR-RAGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHHTCHH-HHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHH
T ss_pred HHHcCHH-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhc
Confidence 9999988 8888888777765 678888888888777654
No 41
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.75 E-value=6.7e-17 Score=145.67 Aligned_cols=327 Identities=12% Similarity=0.040 Sum_probs=183.5
Q ss_pred CcchhhhHhh-HhhhhcCCceeec-CCcccc-ccCCCcceEEecccccccc-----------c----hhhHHH-HHHH--
Q psy12587 3 GATARLTITA-TAWGATGPRTTAH-DHCFKE-TKDGTLPVKVIGDWLPRNI-----------F----GKFYAL-CMYL-- 61 (390)
Q Consensus 3 GG~~~~~~~l-~~L~~~G~~V~~~-~~~~~~-~~~~~~~i~~~~~~~~~~~-----------~----~~~~~~-~~~~-- 61 (390)
+|.......+ ++|.++||+|+++ .....+ ....++.+..+........ . .....+ ..++
T Consensus 11 ~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (384)
T 2p6p_A 11 PATVFALAPLATAARNAGHQVVMAANQDMGPVVTGVGLPAVATTDLPIRHFITTDREGRPEAIPSDPVAQARFTGRWFAR 90 (384)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEESCSSCHHHHHHBCTTSCBCCCCCSHHHHHHHHHHHHHH
T ss_pred cchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHhCCCEEEEeCCcchHHHHhhhcccCccccCcchHHHHHHHHHHHHh
Confidence 5666778889 9999999999988 222211 1223455554432110000 0 001111 1101
Q ss_pred --HHHHHHHHHHHhh-cCCCEEEEccccc-chhHHHhhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHh---c
Q psy12587 62 --RMIVIALYVAWYS-EKPDLVFCDLVSI-CIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTT---C 134 (390)
Q Consensus 62 --~~~~~~~~~~~~~-~~~Dvi~~~~~~~-~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 134 (390)
....... ..+++ .+||+|+++.... +..+++..++|++.+.|++.... .........+.....+.-+ +
T Consensus 91 ~~~~~~~~l-~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~ 165 (384)
T 2p6p_A 91 MAASSLPRM-LDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVDAD----GIHPGADAELRPELSELGLERLP 165 (384)
T ss_dssp HHHHHHHHH-HHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCT----TTHHHHHHHTHHHHHHTTCSSCC
T ss_pred hHHHHHHHH-HHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcccc----hhhHHHHHHHHHHHHHcCCCCCC
Confidence 1111111 13445 8999999986422 23344555699998887653210 0000000000011111101 1
Q ss_pred CcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeeccccc-------C
Q psy12587 135 KADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERK-------K 207 (390)
Q Consensus 135 ~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~-------K 207 (390)
.++.+++.+....+... ..+..++..++ .+. .....+.+. -..+.+.++++.|++... +
T Consensus 166 ~~~~~l~~~~~~~~~~~----~~~~~~~~~~~--~~~-------~~~~~~~l~-~~~~~~~v~v~~Gs~~~~~~~~~~~~ 231 (384)
T 2p6p_A 166 APDLFIDICPPSLRPAN----AAPARMMRHVA--TSR-------QCPLEPWMY-TRDTRQRVLVTSGSRVAKESYDRNFD 231 (384)
T ss_dssp CCSEEEECSCGGGSCTT----SCCCEECCCCC--CCC-------CCBCCHHHH-CCCSSCEEEEECSSSSSCCSSCCCCT
T ss_pred CCCeEEEECCHHHCCCC----CCCCCceEecC--CCC-------CCCCCchhh-cCCCCCEEEEECCCCCccccccccHH
Confidence 15677776654322100 01011222222 110 011111111 012346788999998765 5
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceE
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCI 287 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~ 287 (390)
.+..+++++..+ +++++++++++.. +.++ . ++++|.+ |+++.. ++|..||++
T Consensus 232 ~~~~~~~al~~~----------~~~~~~~~g~~~~--------~~l~----~--~~~~v~~-~~~~~~---~~l~~~d~~ 283 (384)
T 2p6p_A 232 FLRGLAKDLVRW----------DVELIVAAPDTVA--------EALR----A--EVPQARV-GWTPLD---VVAPTCDLL 283 (384)
T ss_dssp THHHHHHHHHTT----------TCEEEEECCHHHH--------HHHH----H--HCTTSEE-ECCCHH---HHGGGCSEE
T ss_pred HHHHHHHHHhcC----------CcEEEEEeCCCCH--------HhhC----C--CCCceEE-cCCCHH---HHHhhCCEE
Confidence 667777777543 2677776543210 2222 2 2578999 999754 688999999
Q ss_pred EeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccceecCcceeeecC---CHHHHHHHHHHHhcCChhHHHHHHHHH
Q psy12587 288 IYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVVDGRTGFLCES---NEEAFAKAMKKIVDNDGNIIQQFSQFG 360 (390)
Q Consensus 288 v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~~~~~g~~~~~---~~~~l~~~i~~l~~~~~~~~~~~~~~~ 360 (390)
|..+ .+++++|||++|+|+|+.+..+ ..+.+.+...|+.++. ++++++++|.++++|++ .++++++.+
T Consensus 284 v~~~----G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~~ 358 (384)
T 2p6p_A 284 VHHA----GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKDT-YARRAQDLS 358 (384)
T ss_dssp EECS----CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHCHH-HHHHHHHHH
T ss_pred EeCC----cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcCHH-HHHHHHHHH
Confidence 9753 4568999999999999988643 5555666668888863 78999999999999988 888888877
Q ss_pred HHHHhhhcCHHHHHHHHHHHHH
Q psy12587 361 FNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
.+.. ..-..+..++.+.+++.
T Consensus 359 ~~~~-~~~~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 359 REIS-GMPLPATVVTALEQLAH 379 (384)
T ss_dssp HHHH-TSCCHHHHHHHHHHHHH
T ss_pred HHHH-hCCCHHHHHHHHHHHhh
Confidence 7665 55677777766665543
No 42
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.67 E-value=3.5e-15 Score=136.84 Aligned_cols=157 Identities=10% Similarity=0.080 Sum_probs=115.8
Q ss_pred CCeEEEEeecccc-----cCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEE
Q psy12587 193 EDIVFLSINRYER-----KKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVL 267 (390)
Q Consensus 193 ~~~~i~~~g~~~~-----~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~ 267 (390)
.+.++++.|+... .+.+..+++++..+ ++++++.+++... +.++ .++++|.
T Consensus 267 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~----------~~~~v~~~g~~~~--------~~l~------~~~~~v~ 322 (441)
T 2yjn_A 267 RRRVCLTLGISSRENSIGQVSIEELLGAVGDV----------DAEIIATFDAQQL--------EGVA------NIPDNVR 322 (441)
T ss_dssp SCEEEEEC----------CCSTTTTHHHHHTS----------SSEEEECCCTTTT--------SSCS------SCCSSEE
T ss_pred CCEEEEECCCCcccccChHHHHHHHHHHHHcC----------CCEEEEEECCcch--------hhhc------cCCCCEE
Confidence 4678889999865 47888888888654 2677776655432 1111 3467999
Q ss_pred EecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccceecCcceeeecC---CHHHHHH
Q psy12587 268 FLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVVDGRTGFLCES---NEEAFAK 340 (390)
Q Consensus 268 ~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~~~~~g~~~~~---~~~~l~~ 340 (390)
+.+++++. ++|..||++|.. +.+.++.|||++|+|+|+.+..+ ..+.+.+...|+.++. +++++++
T Consensus 323 ~~~~~~~~---~ll~~ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~ 395 (441)
T 2yjn_A 323 TVGFVPMH---ALLPTCAATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRE 395 (441)
T ss_dssp ECCSCCHH---HHGGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHH
T ss_pred EecCCCHH---HHHhhCCEEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHH
Confidence 99999975 578999999973 34578999999999999988732 4555666678888764 8899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 341 AMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 341 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+|.++++|+. .++++++.+.+.. +..+.+..++.+.+++.
T Consensus 396 ~i~~ll~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 396 SVKRVLDDPA-HRAGAARMRDDML-AEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHCHH-HHHHHHHHHHHHH-TSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHH-HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 9999999988 8888888777765 67888888888777654
No 43
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.63 E-value=4.8e-14 Score=128.68 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=109.4
Q ss_pred CCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEE-EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 192 KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKL-VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l-~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
+.+.++++.|+.. ....+.+.+++..+.+. ++++ +++|.+... +.+. .++++|.+.+
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~~-------~~~~~~~~g~~~~~--------~~~~------~~~~~v~~~~ 311 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLSAVDGL-------DWHVVLSVGRFVDP--------ADLG------EVPPNVEVHQ 311 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHHHHTTC-------SSEEEEECCTTSCG--------GGGC------SCCTTEEEES
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHHHHhcC-------CcEEEEEECCcCCh--------HHhc------cCCCCeEEec
Confidence 3567888889886 33444444444444332 2566 456765432 2221 2467899999
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccceecCcceeeecC---CHHHHHHHHH
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVVDGRTGFLCES---NEEAFAKAMK 343 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~~~~~g~~~~~---~~~~l~~~i~ 343 (390)
++++. ++|..||++|..+ ..++++||+++|+|+|+.+..+ ..+.+.+.+.|+.++. +.++++++|.
T Consensus 312 ~~~~~---~~l~~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~ 384 (424)
T 2iya_A 312 WVPQL---DILTKASAFITHA----GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVL 384 (424)
T ss_dssp SCCHH---HHHTTCSEEEECC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHH
T ss_pred CCCHH---HHHhhCCEEEECC----chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHH
Confidence 99876 6899999998633 3478999999999999987642 3344555667887753 8899999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 344 KIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
+++++++ .++++++.+.+.. +....+..++.+.+++.
T Consensus 385 ~ll~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 385 AVASDPG-VAERLAAVRQEIR-EAGGARAAADILEGILA 421 (424)
T ss_dssp HHHHCHH-HHHHHHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHcCHH-HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHh
Confidence 9999988 7888777666554 45566666666655543
No 44
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.62 E-value=1.1e-14 Score=133.91 Aligned_cols=265 Identities=8% Similarity=0.034 Sum_probs=168.8
Q ss_pred Hhh-cCCCEEEEcccccchhHHH---hhcccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccHhHH
Q psy12587 72 WYS-EKPDLVFCDLVSICIPILQ---AKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTK 147 (390)
Q Consensus 72 ~~~-~~~Dvi~~~~~~~~~~~~~---~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 147 (390)
.++ .++||++--+..+...... .+..|+-++.-+...-.. +...|++++-....-
T Consensus 344 ~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lGyp~TTG---------------------l~~iDY~i~D~~~~~ 402 (631)
T 3q3e_A 344 VCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATTH---------------------SDFIEYVIVEDDYVG 402 (631)
T ss_dssp HHHHHTCSEEEESCCSSSHHHHHHTTSCCSSEEEEECSSCSCCC---------------------CTTCCEEEEEGGGCC
T ss_pred HHHhcCCCEEEECCCCCCchhHHHHhCCCchheEeccCCCcccC---------------------cccCCEEEeCCCCCC
Confidence 344 8999998855433222222 223788877765322100 223466665332110
Q ss_pred HHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCC-CCeEEEEeecccccCCHHHHHHHHHHHHhhcccc
Q psy12587 148 SVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGK-EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDE 226 (390)
Q Consensus 148 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~ 226 (390)
-...| .+++..+|+..-. +.+......+..++ ++.+ +.++|+.+++ ..|..+.+++++.++.++.|+
T Consensus 403 --~~~~y----sEklirLP~~~~~--~~p~~~~p~r~~~~-lp~~~G~v~Fg~fn~--~~Ki~p~~l~~WarIL~~vP~- 470 (631)
T 3q3e_A 403 --SEECF----SETLLRLPKDALP--YVPSALAPEKVDYL-LRENPEVVNIGIAST--TMKLNPYFLEALKAIRDRAKV- 470 (631)
T ss_dssp --CGGGC----SSEEEEECTTSSC--CCCCTTCCSSCCCC-CCSCCSEEEEEEEEC--STTCCHHHHHHHHHHHHHCSS-
T ss_pred --cccCc----eeeEEECCCCccc--cCCcccCCcccccc-CCcCCCeEEEEECCc--cccCCHHHHHHHHHHHHhCCC-
Confidence 02222 5788888864211 11111111112221 2331 3566777776 568899999999999999885
Q ss_pred cccceEEE--EEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhh
Q psy12587 227 MKTHVKLV--VAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAM 304 (390)
Q Consensus 227 ~~~~~~l~--i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~ 304 (390)
..+. ++|..... ...+.+.+.+.|+++++.|.|.++..+....|+.+|+++.|+.+. .|++.+|||
T Consensus 471 ----s~L~l~~~g~~~g~-------~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~-GgtTtlEAL 538 (631)
T 3q3e_A 471 ----KVHFHFALGQSNGI-------THPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFG-NTNGIIDMV 538 (631)
T ss_dssp ----EEEEEEEESSCCGG-------GHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCSEEECCSSSC-CSHHHHHHH
T ss_pred ----cEEEEEecCCCchh-------hHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCcEEEeCCccc-CChHHHHHH
Confidence 4443 36743211 034444556778888999999999999999999999999998664 499999999
Q ss_pred hcCCCEEEecCCCccccee------cCccee-eecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhh--hcCHHHHHH
Q psy12587 305 FCKRPVIAVNSGGPKESVV------DGRTGF-LCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNE--KFSFQAFSI 375 (390)
Q Consensus 305 a~G~pvi~~~~~~~~e~i~------~~~~g~-~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 375 (390)
+||+|||+........-+. -|-.++ +.. |.+++++...++.+|++ .+++++++.++.... -|+ ..++
T Consensus 539 wmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~-d~eeYv~~Av~La~D~~-~l~~LR~~Lr~~~~~spLFd--~~~~ 614 (631)
T 3q3e_A 539 TLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIAN-TVDEYVERAVRLAENHQ-ERLELRRYIIENNGLNTLFT--GDPR 614 (631)
T ss_dssp HTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEES-SHHHHHHHHHHHHHCHH-HHHHHHHHHHHSCCHHHHTC--SCCT
T ss_pred HcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecC-CHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhhhCCCcc--hhHH
Confidence 9999999987655544332 233443 445 89999999999999999 999999988877543 333 3445
Q ss_pred HHHHHHHhhh
Q psy12587 376 QLNTIVNNML 385 (390)
Q Consensus 376 ~~~~~~~~~~ 385 (390)
++.+.|++++
T Consensus 615 ~~e~~ye~~~ 624 (631)
T 3q3e_A 615 PMGQVFLEKL 624 (631)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 45
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.57 E-value=9.1e-14 Score=125.87 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=101.9
Q ss_pred CCCeEEEEeecccccC-CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 192 KEDIVFLSINRYERKK-NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~K-~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
+.+.++++.|++...+ +.+.+.+++..+.+. +..+++.+.+... + ....+++++.+.+
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~-------~~~~v~~~~~~~~--------~------~~~~~~~~v~~~~ 294 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVADV-------DAEFVLTLGGGDL--------A------LLGELPANVRVVE 294 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGGS-------SSEEEEECCTTCC--------C------CCCCCCTTEEEEC
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhcc-------CceEEEEecCccc--------c------ccccCCCCEEEEe
Confidence 3567778888876544 334445555555443 2555555544332 1 1123578999999
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
+++.. ++|..+|++|.- +..+++.||+++|+|+|+.+..+ ..+.+.+.+.|+.++ +.+..+++|.+++
T Consensus 295 ~~p~~---~lL~~~~~~v~h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~-~~~~~~~al~~lL 366 (400)
T 4amg_A 295 WIPLG---ALLETCDAIIHH----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAE-AGSLGAEQCRRLL 366 (400)
T ss_dssp CCCHH---HHHTTCSEEEEC----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECC-TTTCSHHHHHHHH
T ss_pred ecCHH---HHhhhhhheecc----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcC-CCCchHHHHHHHH
Confidence 99876 578999998853 34568999999999999976533 334455555677776 4455678899999
Q ss_pred cCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy12587 347 DNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTI 380 (390)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
+|+. .+++.++-+.+. ...-+....++.+.++
T Consensus 367 ~d~~-~r~~a~~l~~~~-~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 367 DDAG-LREAALRVRQEM-SEMPPPAETAAXLVAL 398 (400)
T ss_dssp HCHH-HHHHHHHHHHHH-HTSCCHHHHHHHHHHH
T ss_pred cCHH-HHHHHHHHHHHH-HcCCCHHHHHHHHHHh
Confidence 9988 777666555444 3555777776666543
No 46
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.57 E-value=6.1e-14 Score=126.95 Aligned_cols=155 Identities=12% Similarity=0.117 Sum_probs=106.7
Q ss_pred CCCeEEEEeeccc-ccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 192 KEDIVFLSINRYE-RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 192 ~~~~~i~~~g~~~-~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
+.+.++++.|+.. ..+.+..+++++..+ ++++++.++.... + ..+.+++|.+.+
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~----------~~~vv~~~g~~~~--------~-------~~~~~~~v~~~~ 274 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ----------GRRVVLSSGWAGL--------G-------RIDEGDDCLVVG 274 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT----------TCCEEEECTTTTC--------C-------CSSCCTTEEEES
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC----------CCEEEEEeCCccc--------c-------cccCCCCEEEec
Confidence 4567888889987 566667777777654 1556665443321 1 123468999999
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCc----ccceecCcceeeecC---CHHHHHHHHH
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGP----KESVVDGRTGFLCES---NEEAFAKAMK 343 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~----~e~i~~~~~g~~~~~---~~~~l~~~i~ 343 (390)
+++.. .+|..||++|..+ ...++.||+++|+|+|+.+..+- .+.+.+.+.|..++. +.+++.+++.
T Consensus 275 ~~~~~---~ll~~~d~~v~~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~ 347 (404)
T 3h4t_A 275 EVNHQ---VLFGRVAAVVHHG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALA 347 (404)
T ss_dssp SCCHH---HHGGGSSEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHH
T ss_pred CCCHH---HHHhhCcEEEECC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHH
Confidence 99875 5889999999644 23689999999999999865432 233445556777653 7999999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q psy12587 344 KIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382 (390)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
++++ ++ .++++++.+.... + -..+..++.+.++++
T Consensus 348 ~ll~-~~-~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 348 TALT-PG-IRARAAAVAGTIR-T-DGTTVAAKLLLEAIS 382 (404)
T ss_dssp HHTS-HH-HHHHHHHHHTTCC-C-CHHHHHHHHHHHHHH
T ss_pred HHhC-HH-HHHHHHHHHHHHh-h-hHHHHHHHHHHHHHh
Confidence 9998 66 7777766555443 3 456666666665554
No 47
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.48 E-value=2.9e-12 Score=116.42 Aligned_cols=154 Identities=10% Similarity=0.067 Sum_probs=103.4
Q ss_pred CCeEEEEeeccc-ccCCHHHHHHHHHHHHhhcccccccceEEEEE-cCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 193 EDIVFLSINRYE-RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVA-GGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 193 ~~~~i~~~g~~~-~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~-G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
++.++++.|+.. ..+..+.++++++.+. .+++++ |.+... . ..+++++.+.+
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~~----------~~~v~~~g~~~~~----------~------~~~~~~v~~~~ 291 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAHG----------RRVILSRGWADLV----------L------PDDGADCFAIG 291 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHTT----------CCEEECTTCTTCC----------C------SSCGGGEEECS
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHCC----------CeEEEEeCCCccc----------c------cCCCCCEEEeC
Confidence 467888999984 6777777888887652 344444 655321 0 12457899999
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccceecCcceeeecC---CHHHHHHHHH
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVVDGRTGFLCES---NEEAFAKAMK 343 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~~~~~g~~~~~---~~~~l~~~i~ 343 (390)
++++.+ +|..||++|..+ ..++++||+++|+|+|+.+..+ ..+.+.+.+.|+.++. +.++++++|.
T Consensus 292 ~~~~~~---~l~~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~ 364 (415)
T 1iir_A 292 EVNHQV---LFGRVAAVIHHG----GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALA 364 (415)
T ss_dssp SCCHHH---HGGGSSEEEECC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHH
T ss_pred cCChHH---HHhhCCEEEeCC----ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHH
Confidence 999864 689999999743 3469999999999999987643 3455556667887753 8899999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHhhhh
Q psy12587 344 KIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLD 386 (390)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (390)
++ ++++ .++++++.+.+.. . ..-+++..+.++++++
T Consensus 365 ~l-~~~~-~~~~~~~~~~~~~-~----~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 365 TA-LTPE-THARATAVAGTIR-T----DGAAVAARLLLDAVSR 400 (415)
T ss_dssp HH-TSHH-HHHHHHHHHHHSC-S----CHHHHHHHHHHHHHHT
T ss_pred HH-cCHH-HHHHHHHHHHHHh-h----cChHHHHHHHHHHHHh
Confidence 99 8776 6666665554432 3 3334444445554444
No 48
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.43 E-value=1e-11 Score=116.82 Aligned_cols=252 Identities=11% Similarity=0.076 Sum_probs=170.3
Q ss_pred hHHHHHhcCcceEEEccHhHHHHHHH-----HhccCCCCceeecCCCCCCCCCC----CC--------------------
Q psy12587 127 KLEEWTTCKADKIVVNSEFTKSVVQA-----TFRSLDHKCLDILYPSVYTEGLE----KT-------------------- 177 (390)
Q Consensus 127 ~~~~~~~~~ad~ii~~s~~~~~~~~~-----~~~~~~~~~~~vi~~~~~~~~~~----~~-------------------- 177 (390)
.+.+.++..|+.|-++|+...+.++. .+... +.++.-+-|||++..+- |.
T Consensus 394 nMa~lai~~S~~VNgVS~lHae~ik~~~f~~~~~~~-p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~ 472 (796)
T 2c4m_A 394 HMAWIACYAAYSINGVAALHTEIIKAETLADWYALW-PEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDE 472 (796)
T ss_dssp EHHHHHHHHCSEEEESSHHHHHHHHHTTTHHHHHHC-GGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGG
T ss_pred cHHHHHHHhcCceeeccHHHHHHhhhhhhhhHHHcC-ccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHH
Confidence 34566788999999999999998884 23323 57899999999887772 11
Q ss_pred --------Cc---------------cc----hhhhcCCCC-CCCCeEEEEeecccccCCHHH-HHHHHHHHHh--hcccc
Q psy12587 178 --------TP---------------EP----IENVLNPLP-GKEDIVFLSINRYERKKNLEL-AIYSLNSLRS--RLSDE 226 (390)
Q Consensus 178 --------~~---------------~~----~~~~~~~l~-~~~~~~i~~~g~~~~~K~~~~-ll~a~~~l~~--~~~~~ 226 (390)
+. .. +++..+ ++ ..+.+.++++.|+..+|+.+. ++..+..+.+ ..|+.
T Consensus 473 l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~G-l~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~ 551 (796)
T 2c4m_A 473 LKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQG-IEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLT 551 (796)
T ss_dssp GGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCC
Confidence 00 00 112222 22 236788999999999999999 8888877753 22211
Q ss_pred cccceEEEEEcCCCCCCcchhHHHHHHHHHHH----HcCCCC--cEEEecCCChHHHHHHHHhcceEEeCCC--CCCCCc
Q psy12587 227 MKTHVKLVVAGGYDPHNIENVEYYKELGVLVK----KLKLSD--NVLFLTSPSDAAKISLFKFCHCIIYTPS--NEHFGI 298 (390)
Q Consensus 227 ~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~----~~~l~~--~v~~~g~~~~~e~~~~~~~adv~v~ps~--~e~~~~ 298 (390)
...++.+++.|.+.+.....+...+.+...++ .-..++ +|.|+...+..-...++..||+.+.||. .|.+|+
T Consensus 552 ~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGT 631 (796)
T 2c4m_A 552 DIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGT 631 (796)
T ss_dssp SSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCH
T ss_pred CCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCch
Confidence 11248999999998764333333333555554 113456 7888887777777899999999999999 899999
Q ss_pred cHHhhhhcCCCEEEecCCCcccceec--CcceeeecC---CHHHHHHH---HHHHhcCChhHHHHHHHHHHHHHhhhcCH
Q psy12587 299 VPIEAMFCKRPVIAVNSGGPKESVVD--GRTGFLCES---NEEAFAKA---MKKIVDNDGNIIQQFSQFGFNRFNEKFSF 370 (390)
Q Consensus 299 ~~~Ea~a~G~pvi~~~~~~~~e~i~~--~~~g~~~~~---~~~~l~~~---i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (390)
+=+-+|..|++.|++-.|...|+.++ .+||++|-. ++.++... ..-.-.++. ++++-+ ......|||
T Consensus 632 s~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~~--~~~vvd---~~~~g~fs~ 706 (796)
T 2c4m_A 632 SNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYETVPG--LKRALD---ALDNGTLND 706 (796)
T ss_dssp HHHHHHHTTCEEEEESSTHHHHHHHHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHSTT--HHHHHH---TTTSSSSCC
T ss_pred HHHHHHHcCCeEEeccCCeEeehhhhcCCCcEEEecCchhhHHHHHHhhChHHHhhcCHH--HHHHHH---HHHcCCCCC
Confidence 99999999999999887877777644 469999965 44444432 111112232 222222 223457888
Q ss_pred HHHHHHHHHHHHhhhh
Q psy12587 371 QAFSIQLNTIVNNMLD 386 (390)
Q Consensus 371 ~~~~~~~~~~~~~~~~ 386 (390)
+.- ..+.++|++++.
T Consensus 707 ~~~-~~y~~Ly~~L~~ 721 (796)
T 2c4m_A 707 NNS-GLFYDLKHSLIH 721 (796)
T ss_dssp TTC-CHHHHHHHHHHS
T ss_pred CCH-HHHHHHHHHHHh
Confidence 765 678888888764
No 49
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.41 E-value=1.5e-10 Score=109.35 Aligned_cols=209 Identities=10% Similarity=0.080 Sum_probs=148.1
Q ss_pred HHHHHhcCcceEEEccHhHHHHHHHH-----hccCCCCceeecCCCCCCCCCC----CC---------------------
Q psy12587 128 LEEWTTCKADKIVVNSEFTKSVVQAT-----FRSLDHKCLDILYPSVYTEGLE----KT--------------------- 177 (390)
Q Consensus 128 ~~~~~~~~ad~ii~~s~~~~~~~~~~-----~~~~~~~~~~vi~~~~~~~~~~----~~--------------------- 177 (390)
+...++..|+.|-++|+...+.+++. +... ++++.-+-|||++..+- |.
T Consensus 430 Ma~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~-p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~ 508 (824)
T 2gj4_A 430 MAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELE-PHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLR 508 (824)
T ss_dssp HHHHHHHTCSCEEESSHHHHHHHHHTTTHHHHHHC-GGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGG
T ss_pred HHHHHHHhcCceeeEcHHHHHHHhhHHhHHHHHcC-hhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHH
Confidence 44567889999999999999888642 3323 57899999999887761 10
Q ss_pred ------Cccch-------------------hhhcCCCC-CCCCeEEEEeecccccCCHHHH-HHHHHHHHh--hcccccc
Q psy12587 178 ------TPEPI-------------------ENVLNPLP-GKEDIVFLSINRYERKKNLELA-IYSLNSLRS--RLSDEMK 228 (390)
Q Consensus 178 ------~~~~~-------------------~~~~~~l~-~~~~~~i~~~g~~~~~K~~~~l-l~a~~~l~~--~~~~~~~ 228 (390)
....+ .+..+ ++ +.+.+.++++.|+..+|+.+++ +..+..+.+ ..|+...
T Consensus 509 ~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~G-l~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~ 587 (824)
T 2gj4_A 509 KLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYK-VHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFV 587 (824)
T ss_dssp GGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCC
Confidence 00111 11122 22 2367889999999999999997 777777641 3321111
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHHHc----CCCC--cEEEecCCChHHHHHHHHhcceEEeCCC--CCCCCccH
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVKKL----KLSD--NVLFLTSPSDAAKISLFKFCHCIIYTPS--NEHFGIVP 300 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~----~l~~--~v~~~g~~~~~e~~~~~~~adv~v~ps~--~e~~~~~~ 300 (390)
.+..+++.|.+.+.....+...+.+...++.. .+++ +|.|+...+..-...++..||+.+.||. .|.+|++=
T Consensus 588 ~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~ 667 (824)
T 2gj4_A 588 VPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGN 667 (824)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHH
T ss_pred CCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHH
Confidence 13799999999876444444444466666544 2345 7888877777777889999999999999 89999999
Q ss_pred HhhhhcCCCEEEecCCCccccee--cCcceeeecCCHHHH
Q psy12587 301 IEAMFCKRPVIAVNSGGPKESVV--DGRTGFLCESNEEAF 338 (390)
Q Consensus 301 ~Ea~a~G~pvi~~~~~~~~e~i~--~~~~g~~~~~~~~~l 338 (390)
+-||..|++.|++--|...|+.+ ..+||+++...++++
T Consensus 668 MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~~~ev 707 (824)
T 2gj4_A 668 MKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDV 707 (824)
T ss_dssp HHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHHH
T ss_pred HHHHHcCceEEEEecCccchhhhccCCCCEEEeCCcHHHH
Confidence 99999999999988777767654 356899887655555
No 50
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.39 E-value=1.3e-11 Score=112.28 Aligned_cols=135 Identities=10% Similarity=0.060 Sum_probs=94.2
Q ss_pred CCeEEEEeeccc---ccCCHHHHHHHHHHHHhhcccccccceEEEEE-cCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE
Q psy12587 193 EDIVFLSINRYE---RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVA-GGYDPHNIENVEYYKELGVLVKKLKLSDNVLF 268 (390)
Q Consensus 193 ~~~~i~~~g~~~---~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~-G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~ 268 (390)
++.++++.|+.. ..+.+..+++++..+. .+++++ |.+.. + . ..+++++.+
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~----------~~~v~~~g~~~~---------~-~------~~~~~~v~~ 290 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQG----------RRVILSRGWTEL---------V-L------PDDRDDCFA 290 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHTT----------CCEEEECTTTTC---------C-C------SCCCTTEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHCC----------CeEEEEeCCccc---------c-c------cCCCCCEEE
Confidence 466778889874 3555666677766541 445554 65532 1 0 134678999
Q ss_pred ecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccceecCcceeeec--C-CHHHHHHH
Q psy12587 269 LTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVVDGRTGFLCE--S-NEEAFAKA 341 (390)
Q Consensus 269 ~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~~~~~g~~~~--~-~~~~l~~~ 341 (390)
.++++.. ++|..||++|.- +...++.||+++|+|+|+.+..+ ..+.+.+.+.|..++ . +.++++++
T Consensus 291 ~~~~~~~---~ll~~~d~~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~ 363 (416)
T 1rrv_A 291 IDEVNFQ---ALFRRVAAVIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAA 363 (416)
T ss_dssp ESSCCHH---HHGGGSSEEEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHH
T ss_pred eccCChH---HHhccCCEEEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHH
Confidence 9999865 578999999973 23469999999999999977532 334455556787775 3 88999999
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q psy12587 342 MKKIVDNDGNIIQQFSQFGFN 362 (390)
Q Consensus 342 i~~l~~~~~~~~~~~~~~~~~ 362 (390)
|.++ +|+. .++++++.+++
T Consensus 364 i~~l-~~~~-~~~~~~~~~~~ 382 (416)
T 1rrv_A 364 LTTV-LAPE-TRARAEAVAGM 382 (416)
T ss_dssp HHHH-TSHH-HHHHHHHHTTT
T ss_pred HHHh-hCHH-HHHHHHHHHHH
Confidence 9999 8877 66666654443
No 51
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.39 E-value=1.1e-11 Score=116.60 Aligned_cols=252 Identities=10% Similarity=0.047 Sum_probs=171.4
Q ss_pred HHHHHhcCcceEEEccHhHHHHHHH-----HhccCCCCceeecCCCCCCCCCC----CC---------------------
Q psy12587 128 LEEWTTCKADKIVVNSEFTKSVVQA-----TFRSLDHKCLDILYPSVYTEGLE----KT--------------------- 177 (390)
Q Consensus 128 ~~~~~~~~ad~ii~~s~~~~~~~~~-----~~~~~~~~~~~vi~~~~~~~~~~----~~--------------------- 177 (390)
+.+.++..|+.|-++|+...+.+++ .+... +.++.-+-|||++..+- |.
T Consensus 406 Ma~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~-p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~ 484 (796)
T 1l5w_A 406 MANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLW-PNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLI 484 (796)
T ss_dssp HHHHHHHHSSEEEESSHHHHHHHHHTTSHHHHHHC-GGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGG
T ss_pred HHHHHHHhcCccccccHHHHHHHHhHHhhHHHHhC-ccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHH
Confidence 4566788999999999999998874 23323 56899999999765441 10
Q ss_pred ------Cc---------------cc----hhhhcCCCC-CCCCeEEEEeecccccCCHHH-HHHHHHHHHh--hcccccc
Q psy12587 178 ------TP---------------EP----IENVLNPLP-GKEDIVFLSINRYERKKNLEL-AIYSLNSLRS--RLSDEMK 228 (390)
Q Consensus 178 ------~~---------------~~----~~~~~~~l~-~~~~~~i~~~g~~~~~K~~~~-ll~a~~~l~~--~~~~~~~ 228 (390)
+. .. +++..+ ++ ..+.+.++++.|+..+|+.+. ++..+..+.+ .+|+...
T Consensus 485 ~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~G-l~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~ 563 (796)
T 1l5w_A 485 NLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTG-IEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADR 563 (796)
T ss_dssp GGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCC
Confidence 00 00 122223 22 236788999999999999999 7888777654 1221111
Q ss_pred cceEEEEEcCCCCCCcchhHHHHHHHHHHH----HcCCCC--cEEEecCCChHHHHHHHHhcceEEeCCC--CCCCCccH
Q psy12587 229 THVKLVVAGGYDPHNIENVEYYKELGVLVK----KLKLSD--NVLFLTSPSDAAKISLFKFCHCIIYTPS--NEHFGIVP 300 (390)
Q Consensus 229 ~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~----~~~l~~--~v~~~g~~~~~e~~~~~~~adv~v~ps~--~e~~~~~~ 300 (390)
.++.+++.|.+.+.....+...+.+...++ .-..++ +|.|+...+..-...++..||+.+.||. .|.+|++=
T Consensus 564 ~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~ 643 (796)
T 1l5w_A 564 VPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGN 643 (796)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHH
T ss_pred CCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHH
Confidence 249999999998764333333333555554 113456 7888877777767899999999999999 89999999
Q ss_pred HhhhhcCCCEEEecCCCcccceec--CcceeeecCCHHHHHHHHH------HHhcCChhHHHHHHHHHHHHHhhhcCHHH
Q psy12587 301 IEAMFCKRPVIAVNSGGPKESVVD--GRTGFLCESNEEAFAKAMK------KIVDNDGNIIQQFSQFGFNRFNEKFSFQA 372 (390)
Q Consensus 301 ~Ea~a~G~pvi~~~~~~~~e~i~~--~~~g~~~~~~~~~l~~~i~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (390)
+-+|..|++.|++-.|...|+.++ .+||++|-.+++++.+.-. .+..+.. .++++-+++ ....|||+.
T Consensus 644 MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~---~~g~fs~~~ 719 (796)
T 1l5w_A 644 MKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDK-VLDAVLKEL---ESGKYSDGD 719 (796)
T ss_dssp HHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHH---HHTTTTTTC
T ss_pred HHHHHcCCeeecCcCCeeeehhhccCCCcEEEecCCHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHH---HcCCCCCCc
Confidence 999999999998888888777654 4699999767777664322 1222222 233333333 346788877
Q ss_pred HHHHHHHHHHhhhh
Q psy12587 373 FSIQLNTIVNNMLD 386 (390)
Q Consensus 373 ~~~~~~~~~~~~~~ 386 (390)
- ..+.++|++++.
T Consensus 720 ~-~~y~~Ly~~L~~ 732 (796)
T 1l5w_A 720 K-HAFDQMLHSIGK 732 (796)
T ss_dssp T-TTTHHHHHHTST
T ss_pred H-HHHHHHHHHHhc
Confidence 4 778888888764
No 52
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=101.38 Aligned_cols=131 Identities=9% Similarity=0.081 Sum_probs=96.0
Q ss_pred CCeEEEEeeccc---ccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe
Q psy12587 193 EDIVFLSINRYE---RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL 269 (390)
Q Consensus 193 ~~~~i~~~g~~~---~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~ 269 (390)
.+.++++.|++. +.|.+..+++++..+ + .++++++++... + .++++|.+.
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~----~------~~~~~~~g~~~~--------~---------~~~~~v~~~ 73 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQI----P------QKVLWRFDGNKP--------D---------TLGLNTRLY 73 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTS----S------SEEEEECCSSCC--------T---------TCCTTEEEE
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhC----C------CeEEEEECCcCc--------c---------cCCCcEEEe
Confidence 567889999985 556667777776543 1 566666655432 1 235789999
Q ss_pred cCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCC----CcccceecCcceeeecC---CHHHHHHHH
Q psy12587 270 TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG----GPKESVVDGRTGFLCES---NEEAFAKAM 342 (390)
Q Consensus 270 g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~----~~~e~i~~~~~g~~~~~---~~~~l~~~i 342 (390)
|++++.++..+ ..||++|.. +.+.+++|||++|+|+|+.+.. ...+.+.+...|+.++. ++++++++|
T Consensus 74 ~~~~~~~~l~~-~~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i 148 (170)
T 2o6l_A 74 KWIPQNDLLGH-PKTRAFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNAL 148 (170)
T ss_dssp SSCCHHHHHTS-TTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHH
T ss_pred cCCCHHHHhcC-CCcCEEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHH
Confidence 99998653322 999999974 3458999999999999999864 33556677778988864 789999999
Q ss_pred HHHhcCChhHHHHH
Q psy12587 343 KKIVDNDGNIIQQF 356 (390)
Q Consensus 343 ~~l~~~~~~~~~~~ 356 (390)
.+++++++ .++++
T Consensus 149 ~~ll~~~~-~~~~a 161 (170)
T 2o6l_A 149 KRVINDPS-YKENV 161 (170)
T ss_dssp HHHHHCHH-HHHHH
T ss_pred HHHHcCHH-HHHHH
Confidence 99998876 44443
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=9.6e-09 Score=99.08 Aligned_cols=186 Identities=10% Similarity=0.178 Sum_probs=140.1
Q ss_pred hhhcCCCCCCCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCC
Q psy12587 183 ENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKL 262 (390)
Q Consensus 183 ~~~~~~l~~~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l 262 (390)
+..++ ||+ +.++|+.+.++ .|=.+..++++.++.++.|+ -+|++....... ...+++.+++.|+
T Consensus 514 R~~~g-Lp~-~~v~f~~fN~~--~Ki~p~~~~~W~~IL~~vP~-----S~L~Ll~~~~~~-------~~~l~~~~~~~gi 577 (723)
T 4gyw_A 514 RSQYG-LPE-DAIVYCNFNQL--YKIDPSTLQMWANILKRVPN-----SVLWLLRFPAVG-------EPNIQQYAQNMGL 577 (723)
T ss_dssp GGGGT-CCT-TSEEEECCSCG--GGCCHHHHHHHHHHHHHCSS-----EEEEEEETTGGG-------HHHHHHHHHHTTC
T ss_pred hhhcC-CCC-CCEEEEeCCcc--ccCCHHHHHHHHHHHHhCCC-----CeEEEEeCcHHH-------HHHHHHHHHhcCC
Confidence 34444 454 66776666554 46788999999999999995 888887654321 2678888888887
Q ss_pred C-CcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCcccc-----eec-CcceeeecCCH
Q psy12587 263 S-DNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKES-----VVD-GRTGFLCESNE 335 (390)
Q Consensus 263 ~-~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~-----i~~-~~~g~~~~~~~ 335 (390)
+ ++|.|.+..+..+....++.+|+++-|..+ +.+++.+||+.+|+|||+-....+..- +.. |-..+++. |.
T Consensus 578 ~~~r~~f~~~~~~~~~l~~~~~~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~-~~ 655 (723)
T 4gyw_A 578 PQNRIIFSPVAPKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAK-NR 655 (723)
T ss_dssp CGGGEEEEECCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCS-SH
T ss_pred CcCeEEECCCCCHHHHHHHhCCCeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccC-CH
Confidence 4 689999999999999999999999976544 557899999999999999664322221 111 22233444 89
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHhh--hcCHHHHHHHHHHHHHhhhhh
Q psy12587 336 EAFAKAMKKIVDNDGNIIQQFSQFGFNRFNE--KFSFQAFSIQLNTIVNNMLDK 387 (390)
Q Consensus 336 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 387 (390)
++..+...++.+|++ .+..+++.-++.... -|+.+.+++.+.+.|+++.++
T Consensus 656 ~~Y~~~a~~la~d~~-~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r 708 (723)
T 4gyw_A 656 QEYEDIAVKLGTDLE-YLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEH 708 (723)
T ss_dssp HHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 888888777666533 689999999999999887543
No 54
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.65 E-value=2.9e-06 Score=77.50 Aligned_cols=145 Identities=10% Similarity=0.006 Sum_probs=88.0
Q ss_pred CCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEE-EEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 192 KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKL-VVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l-~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
+...+++..|+.... ..+.+.+.+..+.+.. .++ +.+|..... ...+.+.+. . ++++.+.+
T Consensus 270 ~~~vv~vs~GS~~~~-~~~~~~~~~~~l~~~~-------~~~lw~~~~~~~~-----~l~~~~~~~---~--~~~~~v~~ 331 (456)
T 2c1x_A 270 PTSVVYISFGTVTTP-PPAEVVALSEALEASR-------VPFIWSLRDKARV-----HLPEGFLEK---T--RGYGMVVP 331 (456)
T ss_dssp TTCEEEEECCSSCCC-CHHHHHHHHHHHHHHT-------CCEEEECCGGGGG-----GSCTTHHHH---H--TTTEEEES
T ss_pred CcceEEEecCccccC-CHHHHHHHHHHHHhcC-------CeEEEEECCcchh-----hCCHHHHhh---c--CCceEEec
Confidence 356777888887643 3344444444443321 333 444533210 000112211 1 36788899
Q ss_pred CCChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccceecC-cceeeecC---CHHHHHH
Q psy12587 271 SPSDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVVDG-RTGFLCES---NEEAFAK 340 (390)
Q Consensus 271 ~~~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~~~-~~g~~~~~---~~~~l~~ 340 (390)
++++. ++|. .+|++|. -+..++++||+++|+|+|+.+..+ ....+.+. +.|..++. +.+++.+
T Consensus 332 w~pq~---~vL~h~~~~~fvt----h~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l~~ 404 (456)
T 2c1x_A 332 WAPQA---EVLAHEAVGAFVT----HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMS 404 (456)
T ss_dssp CCCHH---HHHTSTTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHH
T ss_pred CCCHH---HHhcCCcCCEEEe----cCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcCHHHHHH
Confidence 99986 5788 6778884 234568999999999999977532 23344444 57777752 7899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q psy12587 341 AMKKIVDNDGNIIQQFSQFGFNR 363 (390)
Q Consensus 341 ~i~~l~~~~~~~~~~~~~~~~~~ 363 (390)
+|.+++++++ .+++++++++.
T Consensus 405 ~i~~ll~~~~--~~~~r~~a~~l 425 (456)
T 2c1x_A 405 CFDQILSQEK--GKKLRENLRAL 425 (456)
T ss_dssp HHHHHHHSHH--HHHHHHHHHHH
T ss_pred HHHHHHCCCc--HHHHHHHHHHH
Confidence 9999998763 34455555443
No 55
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=98.63 E-value=4.3e-06 Score=77.13 Aligned_cols=149 Identities=10% Similarity=0.040 Sum_probs=89.3
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEE-EcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVV-AGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS 271 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i-~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~ 271 (390)
...+++..|+... .....+.+.+..+.+. +.+++. +|...... ......+.+.+. . ++++.+.++
T Consensus 295 ~~vv~vs~GS~~~-~~~~~~~~~~~~l~~~-------~~~~l~~~~~~~~~~-~~~~l~~~~~~~---~--~~~~~v~~~ 360 (482)
T 2pq6_A 295 GSVVYVNFGSTTV-MTPEQLLEFAWGLANC-------KKSFLWIIRPDLVIG-GSVIFSSEFTNE---I--ADRGLIASW 360 (482)
T ss_dssp TCEEEEECCSSSC-CCHHHHHHHHHHHHHT-------TCEEEEECCGGGSTT-TGGGSCHHHHHH---H--TTTEEEESC
T ss_pred CceEEEecCCccc-CCHHHHHHHHHHHHhc-------CCcEEEEEcCCcccc-ccccCcHhHHHh---c--CCCEEEEee
Confidence 5677788888653 2344444444444432 244444 44321000 000001333322 2 468999999
Q ss_pred CChHHHHHHHHhcce--EEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccce-ecCcceeeecC--CHHHHHHHH
Q psy12587 272 PSDAAKISLFKFCHC--IIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESV-VDGRTGFLCES--NEEAFAKAM 342 (390)
Q Consensus 272 ~~~~e~~~~~~~adv--~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i-~~~~~g~~~~~--~~~~l~~~i 342 (390)
+++. .+|+.+++ +|. -+..++++||+++|+|+|+.+..+ ....+ +..+.|+.+.. +.+++.++|
T Consensus 361 ~pq~---~~L~h~~~~~~vt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~~i 433 (482)
T 2pq6_A 361 CPQD---KVLNHPSIGGFLT----HCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLI 433 (482)
T ss_dssp CCHH---HHHTSTTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHHHHHHHH
T ss_pred cCHH---HHhcCCCCCEEEe----cCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCHHHHHHHH
Confidence 9987 48877665 653 234568999999999999987632 22333 24557777753 899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHH
Q psy12587 343 KKIVDNDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~ 364 (390)
.+++++++ .+.+++++++..
T Consensus 434 ~~ll~~~~--~~~~r~~a~~l~ 453 (482)
T 2pq6_A 434 NEVIAGDK--GKKMKQKAMELK 453 (482)
T ss_dssp HHHHTSHH--HHHHHHHHHHHH
T ss_pred HHHHcCCc--HHHHHHHHHHHH
Confidence 99998764 355666665543
No 56
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=98.63 E-value=7.9e-05 Score=68.22 Aligned_cols=139 Identities=10% Similarity=0.035 Sum_probs=83.4
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEE-EEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLV-VAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS 271 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~-i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~ 271 (390)
...+++..|+....-+.+.+.+++..+.+. +.+++ .+|.+....+ +.+.+.... ++++.+.++
T Consensus 276 ~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~-------~~~~l~~~~~~~~~l~------~~~~~~~~~---~~~~~v~~w 339 (463)
T 2acv_A 276 KSVVFLCFGSMGVSFGPSQIREIALGLKHS-------GVRFLWSNSAEKKVFP------EGFLEWMEL---EGKGMICGW 339 (463)
T ss_dssp TCEEEEECCSSCCCCCHHHHHHHHHHHHHH-------TCEEEEECCCCGGGSC------TTHHHHHHH---HCSEEEESS
T ss_pred CceEEEEeccccccCCHHHHHHHHHHHHhC-------CCcEEEEECCCcccCC------hhHHHhhcc---CCCEEEEcc
Confidence 567778888876222334444444444332 14444 4454200000 222222210 256888899
Q ss_pred CChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccc-eecCcceeee-c-------C-CH
Q psy12587 272 PSDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKES-VVDGRTGFLC-E-------S-NE 335 (390)
Q Consensus 272 ~~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~-i~~~~~g~~~-~-------~-~~ 335 (390)
+++. .+|. .+|++|.- +..++++||+++|+|+|+.+..+ .... +...+.|+.+ . . +.
T Consensus 340 ~pq~---~vL~h~~~~~fvth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~ 412 (463)
T 2acv_A 340 APQV---EVLAHKAIGGFVSH----CGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAA 412 (463)
T ss_dssp CCHH---HHHHSTTEEEEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCH
T ss_pred CCHH---HHhCCCccCeEEec----CCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCccccH
Confidence 9976 4676 57778742 34568999999999999977532 2333 3555677777 2 5 78
Q ss_pred HHHHHHHHHHhcC-ChhHHHH
Q psy12587 336 EAFAKAMKKIVDN-DGNIIQQ 355 (390)
Q Consensus 336 ~~l~~~i~~l~~~-~~~~~~~ 355 (390)
+++.++|.+++++ +. .+++
T Consensus 413 ~~l~~ai~~ll~~~~~-~r~~ 432 (463)
T 2acv_A 413 EEIEKGLKDLMDKDSI-VHKK 432 (463)
T ss_dssp HHHHHHHHHHTCTTCT-HHHH
T ss_pred HHHHHHHHHHHhccHH-HHHH
Confidence 9999999999974 44 4443
No 57
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.54 E-value=2.4e-05 Score=70.95 Aligned_cols=204 Identities=13% Similarity=0.053 Sum_probs=110.9
Q ss_pred HhcCcceEEEccHhHHHH-HHHHhccCCCCceeecCCCCCCCCCC-CCCccchhhhcCCCCCCCCeEEEEeecccccCCH
Q psy12587 132 TTCKADKIVVNSEFTKSV-VQATFRSLDHKCLDILYPSVYTEGLE-KTTPEPIENVLNPLPGKEDIVFLSINRYERKKNL 209 (390)
Q Consensus 132 ~~~~ad~ii~~s~~~~~~-~~~~~~~~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~~ 209 (390)
.+..++.+++.|-...+. ..+.+... ..++..|.+-.....-. ........+.++. ..++..+++..|+.... ..
T Consensus 212 ~~~~~~~vl~ns~~eLE~~~~~~~~~~-~~~v~~vGPl~~~~~~~~~~~~~~~~~wLd~-~~~~~vVyvsfGS~~~~-~~ 288 (454)
T 3hbf_A 212 ELPRANAVAINSFATIHPLIENELNSK-FKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQ-HENSSVVYISFGSVVTP-PP 288 (454)
T ss_dssp HGGGSSCEEESSCGGGCHHHHHHHHTT-SSCEEECCCHHHHSCCSCCCCTTCHHHHHHT-SCTTCEEEEECCSSCCC-CH
T ss_pred hhccCCEEEECChhHhCHHHHHHHHhc-CCCEEEECCcccccccccccchHHHHHHHhc-CCCCceEEEecCCCCcC-CH
Confidence 366789999988654432 22222111 12444444321110000 1112233444421 22356777888887643 34
Q ss_pred HHHHHHHHHHHhhcccccccceEEE-EEcCCCCCCcchhHHHHHHH-HHHHHcCCCCcEEEecCCChHHHHHHHHhcceE
Q psy12587 210 ELAIYSLNSLRSRLSDEMKTHVKLV-VAGGYDPHNIENVEYYKELG-VLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCI 287 (390)
Q Consensus 210 ~~ll~a~~~l~~~~~~~~~~~~~l~-i~G~~~~~~~~~~~y~~~~~-~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~ 287 (390)
+.+.+.+..+.+.. .+++ .+|.... +.+. ...++ .++++.+.+++++. .++..+++.
T Consensus 289 ~~~~el~~~l~~~~-------~~flw~~~~~~~---------~~lp~~~~~~--~~~~~~vv~w~Pq~---~vL~h~~v~ 347 (454)
T 3hbf_A 289 HELTALAESLEECG-------FPFIWSFRGDPK---------EKLPKGFLER--TKTKGKIVAWAPQV---EILKHSSVG 347 (454)
T ss_dssp HHHHHHHHHHHHHC-------CCEEEECCSCHH---------HHSCTTHHHH--TTTTEEEESSCCHH---HHHHSTTEE
T ss_pred HHHHHHHHHHHhCC-------CeEEEEeCCcch---------hcCCHhHHhh--cCCceEEEeeCCHH---HHHhhcCcC
Confidence 44445554444432 3444 4443210 1110 11111 24688888999986 688999943
Q ss_pred EeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccceecC-cceeeecC---CHHHHHHHHHHHhcCChhHHHHHHHH
Q psy12587 288 IYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESVVDG-RTGFLCES---NEEAFAKAMKKIVDNDGNIIQQFSQF 359 (390)
Q Consensus 288 v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i~~~-~~g~~~~~---~~~~l~~~i~~l~~~~~~~~~~~~~~ 359 (390)
++-++ +..++++||+++|+|+|+.+..+ ....+.+. +.|+.+.. +.+++.++|.++++++ ..++++++
T Consensus 348 ~fvtH--~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~--~~~~~r~~ 423 (454)
T 3hbf_A 348 VFLTH--SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE--KGGIMRQK 423 (454)
T ss_dssp EEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSSH--HHHHHHHH
T ss_pred eEEec--CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCCC--hHHHHHHH
Confidence 33232 23458999999999999977532 22334443 57777653 8999999999999874 34455555
Q ss_pred HHHH
Q psy12587 360 GFNR 363 (390)
Q Consensus 360 ~~~~ 363 (390)
+++.
T Consensus 424 a~~l 427 (454)
T 3hbf_A 424 IVKL 427 (454)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 58
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=98.33 E-value=0.00057 Score=62.82 Aligned_cols=78 Identities=13% Similarity=0.037 Sum_probs=54.6
Q ss_pred EEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCC----cccce-ecCcceeeec-----C-C
Q psy12587 266 VLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG----PKESV-VDGRTGFLCE-----S-N 334 (390)
Q Consensus 266 v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~----~~e~i-~~~~~g~~~~-----~-~ 334 (390)
+.+.+++++. .+|+.+++.++-++ +..++++||+++|+|+|+.+..+ ....+ +.-+.|+.+. . +
T Consensus 341 ~~v~~w~Pq~---~vL~h~~v~~fvtH--gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~ 415 (480)
T 2vch_A 341 FVIPFWAPQA---QVLAHPSTGGFLTH--CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVR 415 (480)
T ss_dssp EEEESCCCHH---HHHHSTTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCC
T ss_pred EEEeCccCHH---HHhCCCCcCeEEec--ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccC
Confidence 4556799876 68999885332232 33468999999999999977532 22332 4545666653 4 7
Q ss_pred HHHHHHHHHHHhcC
Q psy12587 335 EEAFAKAMKKIVDN 348 (390)
Q Consensus 335 ~~~l~~~i~~l~~~ 348 (390)
.++++++|.+++++
T Consensus 416 ~~~l~~av~~vl~~ 429 (480)
T 2vch_A 416 REEVARVVKGLMEG 429 (480)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999974
No 59
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.30 E-value=1.5e-05 Score=67.28 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=64.9
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
.+.++++.|......-...+++++. +. . -..++.|.+... ++++++.+++. +++.+.+++
T Consensus 157 ~~~ILv~~GG~d~~~l~~~vl~~L~---~~-~------~i~vv~G~~~~~-------~~~l~~~~~~~---~~v~v~~~~ 216 (282)
T 3hbm_A 157 KYDFFICMGGTDIKNLSLQIASELP---KT-K------IISIATSSSNPN-------LKKLQKFAKLH---NNIRLFIDH 216 (282)
T ss_dssp CEEEEEECCSCCTTCHHHHHHHHSC---TT-S------CEEEEECTTCTT-------HHHHHHHHHTC---SSEEEEESC
T ss_pred CCeEEEEECCCchhhHHHHHHHHhh---cC-C------CEEEEECCCchH-------HHHHHHHHhhC---CCEEEEeCH
Confidence 4456677787654432334444443 22 1 234566776542 36777766553 479999998
Q ss_pred ChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC
Q psy12587 273 SDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 273 ~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~ 315 (390)
++. .++|+.||++|.+ .|.++.|++++|+|.|.-+.
T Consensus 217 ~~m--~~~m~~aDlvI~~-----gG~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 217 ENI--AKLMNESNKLIIS-----ASSLVNEALLLKANFKAICY 252 (282)
T ss_dssp SCH--HHHHHTEEEEEEE-----SSHHHHHHHHTTCCEEEECC
T ss_pred HHH--HHHHHHCCEEEEC-----CcHHHHHHHHcCCCEEEEeC
Confidence 765 7999999999973 25799999999999998764
No 60
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=98.17 E-value=0.00016 Score=63.62 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=69.4
Q ss_pred CCCeEEEEeec-ccccCCHH--HHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCC---CCc
Q psy12587 192 KEDIVFLSINR-YERKKNLE--LAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKL---SDN 265 (390)
Q Consensus 192 ~~~~~i~~~g~-~~~~K~~~--~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l---~~~ 265 (390)
+.+++++..|. ..+.|.+. .+.+++..+.++ ++++++.|+..+. +..++..+..+- ...
T Consensus 179 ~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~-------~~~vvl~g~~~e~--------~~~~~i~~~~~~~~~~~~ 243 (348)
T 1psw_A 179 ERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE-------GYQVVLFGSAKDH--------EAGNEILAALNTEQQAWC 243 (348)
T ss_dssp SSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT-------TCEEEECCCGGGH--------HHHHHHHTTSCHHHHTTE
T ss_pred CCcEEEEECCCCccccCCCCHHHHHHHHHHHHHC-------CCeEEEEeChhhH--------HHHHHHHHhhhhccccce
Confidence 35677778887 54666654 788888888765 2788888765431 333333332210 123
Q ss_pred EEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEe
Q psy12587 266 VLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 266 v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~ 313 (390)
+.+.|..+-.|+..+++.||++|... .|..-+ |.++|+|+|+-
T Consensus 244 ~~l~g~~sl~e~~ali~~a~l~I~~D----sg~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 244 RNLAGETQLDQAVILIAACKAIVTND----SGLMHV-AAALNRPLVAL 286 (348)
T ss_dssp EECTTTSCHHHHHHHHHTSSEEEEES----SHHHHH-HHHTTCCEEEE
T ss_pred EeccCcCCHHHHHHHHHhCCEEEecC----CHHHHH-HHHcCCCEEEE
Confidence 56788899999999999999999764 233444 99999999983
No 61
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.89 E-value=0.00023 Score=62.46 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=72.4
Q ss_pred CCCeEEEEeecccccCCH--HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe
Q psy12587 192 KEDIVFLSINRYERKKNL--ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL 269 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~K~~--~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~ 269 (390)
+.+++.+..|.-.+.|.+ +.+.+++..+.+++ .++++.|+..+. +..++..+..+ ...+.+.
T Consensus 184 ~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g-------~~vvl~g~~~e~--------~~~~~i~~~~~-~~~~~l~ 247 (349)
T 3tov_A 184 TDILIGFNIGSAVPEKRWPAERFAHVADYFGRLG-------YKTVFFGGPMDL--------EMVQPVVEQME-TKPIVAT 247 (349)
T ss_dssp TCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHT-------CEEEECCCTTTH--------HHHHHHHHTCS-SCCEECT
T ss_pred CCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCC-------CeEEEEeCcchH--------HHHHHHHHhcc-cccEEee
Confidence 356777777765556655 57888888887652 677777765442 44455555544 2446778
Q ss_pred cCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 270 TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 270 g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
|..+-.|+..+++.||++|..- .|..-+ |.++|+|+|+--
T Consensus 248 g~~sl~e~~ali~~a~~~i~~D----sG~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 248 GKFQLGPLAAAMNRCNLLITND----SGPMHV-GISQGVPIVALY 287 (349)
T ss_dssp TCCCHHHHHHHHHTCSEEEEES----SHHHHH-HHTTTCCEEEEC
T ss_pred CCCCHHHHHHHHHhCCEEEECC----CCHHHH-HHhcCCCEEEEE
Confidence 8899999999999999999753 255555 899999999943
No 62
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=97.81 E-value=0.00049 Score=66.89 Aligned_cols=187 Identities=13% Similarity=0.173 Sum_probs=107.4
Q ss_pred hcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCC----ccchhhhcCCCCCCCCeEEEEeecccccC-
Q psy12587 133 TCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTT----PEPIENVLNPLPGKEDIVFLSINRYERKK- 207 (390)
Q Consensus 133 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~i~~~g~~~~~K- 207 (390)
.+..|.+++.|+...+.+.+.|+.. ..++.....+=....+.... ...+++.++ ++ .++.+|+|+-+++...
T Consensus 476 ~~~~D~~~~~s~~~~~~~~~~f~~~-~~~i~~~G~PR~D~l~~~~~~~~~~~~~~~~~~-~~-~~kk~ILyaPT~r~~~~ 552 (729)
T 3l7i_A 476 TSRWDYLISPNRYSTEIFRSAFWMD-EERILEIGYPRNDVLVNRANDQEYLDEIRTHLN-LP-SDKKVIMYAPTWRDDEF 552 (729)
T ss_dssp HTTCSEEEESSHHHHHHHHHHTCCC-GGGEEESCCGGGHHHHHSTTCHHHHHHHHHHTT-CC-SSCEEEEECCCCCGGGC
T ss_pred hccCCEEEeCCHHHHHHHHHHhCCC-cceEEEcCCCchHHHhcccchHHHHHHHHHHhC-CC-CCCeEEEEeeeeeCCcc
Confidence 5678999999999999999887632 34555554442222221111 123445554 33 4778899998876542
Q ss_pred ---C-----HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHH
Q psy12587 208 ---N-----LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKIS 279 (390)
Q Consensus 208 ---~-----~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~ 279 (390)
+ ...-++.+.+.... +..+++-.. ..+.......+..+.+.-... ..++.+
T Consensus 553 ~~~~~~~~~~~~~~~~l~~~l~~-------~~~li~r~H------------p~~~~~~~~~~~~~~~~~~~~--~~di~~ 611 (729)
T 3l7i_A 553 VSKGKYLFELKIDLDNLYKELGD-------DYVILLRMH------------YLISNALDLSGYENFAIDVSN--YNDVSE 611 (729)
T ss_dssp CGGGSSCCCCTTCHHHHHHHHTT-------TEEEEECCC------------HHHHTTCCCTTCTTTEEECTT--CSCHHH
T ss_pred ccccccccchhhHHHHHHHHcCC-------CeEEEEecC------------cchhccccccccCCcEEeCCC--CcCHHH
Confidence 1 11123333332221 366666432 222111111122344443332 235578
Q ss_pred HHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC--C-------C-cccceecCcceeeecCCHHHHHHHHHHHhcCC
Q psy12587 280 LFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS--G-------G-PKESVVDGRTGFLCESNEEAFAKAMKKIVDND 349 (390)
Q Consensus 280 ~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~--~-------~-~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~ 349 (390)
+|..||++|.- ++.+++|++..++|||.... . | ..+ +.+...|.++. +.+++.++|.+....+
T Consensus 612 ll~~aD~lITD-----ySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d-~~~~~pg~~~~-~~~eL~~~i~~~~~~~ 684 (729)
T 3l7i_A 612 LFLISDCLITD-----YSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMN-YMEDLPGPIYT-EPYGLAKELKNLDKVQ 684 (729)
T ss_dssp HHHTCSEEEES-----SCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSC-TTSSSSSCEES-SHHHHHHHHTTHHHHH
T ss_pred HHHHhCEEEee-----chHHHHhHHhhCCCEEEecCCHHHHhhccCCcccC-hhHhCCCCeEC-CHHHHHHHHhhhhccc
Confidence 99999999953 46789999999999998631 1 1 111 12223566666 8999999998876543
Q ss_pred h
Q psy12587 350 G 350 (390)
Q Consensus 350 ~ 350 (390)
.
T Consensus 685 ~ 685 (729)
T 3l7i_A 685 Q 685 (729)
T ss_dssp H
T ss_pred h
Confidence 3
No 63
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=97.39 E-value=0.003 Score=60.19 Aligned_cols=148 Identities=12% Similarity=0.140 Sum_probs=104.0
Q ss_pred CCeEEEEeecccccCCHHH-HHHHHH---HHHhhc-----cccc---ccceEEEEEcCCCCCCcchhHHHHHHHHHHHHc
Q psy12587 193 EDIVFLSINRYERKKNLEL-AIYSLN---SLRSRL-----SDEM---KTHVKLVVAGGYDPHNIENVEYYKELGVLVKKL 260 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~-ll~a~~---~l~~~~-----~~~~---~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~ 260 (390)
+.+.++++-|+..+|...+ ++..+. ++++.. |+.. .....+++.|...+...........+...++..
T Consensus 599 ~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~i 678 (879)
T 1ygp_A 599 DTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIV 678 (879)
T ss_dssp GCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHh
Confidence 5788899999999999988 565544 333330 1000 123889999987765443444434444444311
Q ss_pred ----CCCC--cEEEecCCChHHHHHHHHhcceEEeCCC--CCCCCccHHhhhhcCCCEEEecCCCcccceec--Ccceee
Q psy12587 261 ----KLSD--NVLFLTSPSDAAKISLFKFCHCIIYTPS--NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVD--GRTGFL 330 (390)
Q Consensus 261 ----~l~~--~v~~~g~~~~~e~~~~~~~adv~v~ps~--~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~--~~~g~~ 330 (390)
.+.+ .|.|+...+-.-...++..||+-...|. .|..|++=+-+|.-|.+.|++--|...|+.++ .+|+++
T Consensus 679 N~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~fi 758 (879)
T 1ygp_A 679 NNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFL 758 (879)
T ss_dssp TTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSEE
T ss_pred ccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEEE
Confidence 2344 6888887766666789999999999877 69999999999999999999998988888765 458888
Q ss_pred ecCCHHHHHH
Q psy12587 331 CESNEEAFAK 340 (390)
Q Consensus 331 ~~~~~~~l~~ 340 (390)
|-.+.+++.+
T Consensus 759 FG~~~~ev~~ 768 (879)
T 1ygp_A 759 FGNLSENVEE 768 (879)
T ss_dssp ESCCHHHHHH
T ss_pred ccCCHHHHHH
Confidence 8655444433
No 64
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=96.84 E-value=0.11 Score=40.35 Aligned_cols=318 Identities=12% Similarity=0.120 Sum_probs=172.3
Q ss_pred cchhhhHhh-HhhhhcCCceeec---CCcccccc---CCCcceEEeccccccccchhhHHHHHHHHHHHHHHHHHHhhcC
Q psy12587 4 ATARLTITA-TAWGATGPRTTAH---DHCFKETK---DGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYSEK 76 (390)
Q Consensus 4 G~~~~~~~l-~~L~~~G~~V~~~---~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (390)
|+..+.++. ..+.+.||+|+++ +..+.... ...+.+..+- ... ....++. . .+
T Consensus 16 gvtkfsleqrdwfiknghevtlvyakdksftrtsshdhksfsipvil---ake-------ydkalkl---------v-nd 75 (401)
T 1xv5_A 16 GVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRTSSHDHKSFSIPVIL---AKE-------YDKALKL---------V-ND 75 (401)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTTTSSSCTTTCEEECT---TTC-------HHHHHHH---------H-TS
T ss_pred CceeeehhhhhhhhcCCcEEEEEEeccccccccccccCccccceeEe---hhh-------hHHHhhh---------h-cc
Confidence 556667777 8889999999987 33332222 1223333331 110 0011111 1 89
Q ss_pred CCEEEEcccccch------h-HHHhh---c--ccEEEEeecCCccccchhhhhhhhcccchhhHHHHHhcCcceEEEccH
Q psy12587 77 PDLVFCDLVSICI------P-ILQAK---Q--FKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSE 144 (390)
Q Consensus 77 ~Dvi~~~~~~~~~------~-~~~~~---~--~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~ 144 (390)
.|+++.++.++.. - ..++. + +.+|++.|+...... ++-. -+ ....++||.++..|+
T Consensus 76 cdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvlsl------rrnl-----gl-eetvrradvifshsd 143 (401)
T 1xv5_A 76 CDILIINSVPATSVQEATINNYKKLLDNIKPSIRVVVYQHDHSVLSL------RRNL-----GL-EETVRRADVIFSHSD 143 (401)
T ss_dssp CSEEEEEECCBTTSCHHHHHHHHHHHHHSCTTSEEEEEECCCSHHHH------TTBS-----SH-HHHHHHCSEEEESCT
T ss_pred CcEEEEccCccchhHHHHHhhHHHHHhcCCCceEEEEEeccchhhhh------hhhc-----Ch-HHhhhhhceEEecCC
Confidence 9999988744321 1 11111 1 788999987432111 1100 11 234678999999875
Q ss_pred ---hHHHHHHHHhccCCCCceeecCCCCC----CCCCCCC-Cccchhhhc-CCCCCCCCeEEEEeecccccCCHHHHHHH
Q psy12587 145 ---FTKSVVQATFRSLDHKCLDILYPSVY----TEGLEKT-TPEPIENVL-NPLPGKEDIVFLSINRYERKKNLELAIYS 215 (390)
Q Consensus 145 ---~~~~~~~~~~~~~~~~~~~vi~~~~~----~~~~~~~-~~~~~~~~~-~~l~~~~~~~i~~~g~~~~~K~~~~ll~a 215 (390)
..+-.++++|+. .+..... +. .-.|+++ .-...+..+ ....+-+--+=-++||-..+||+-.+.+.
T Consensus 144 ngdfnkvlmkewype----tvslfdd-ieeaptvynfqppmdivkvrstywkdvseinmninrwigrtttwkgfyqmfdf 218 (401)
T 1xv5_A 144 NGDFNKVLMKEWYPE----TVSLFDD-IEEAPTVYNFQPPMDIVKVRSTYWKDVSEINMNINRWIGRTTTWKGFYQMFDF 218 (401)
T ss_dssp TSHHHHTHHHHHSCS----SCCSSSC-CCCCCCEEECCCCBCHHHHHHHHCCCGGGCEEEEEEEECCSCGGGCHHHHHHH
T ss_pred CCcHHHHHHHhhccc----hhhhhcc-hhhCCceeccCCCceeeeeehhhhccHHHhhcchhhhhcccchhHhHHHHhhH
Confidence 444456667652 2222111 10 0012221 111111111 00000011233588999999999999998
Q ss_pred HHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC---------------Cc--EEEecCCChHHHH
Q psy12587 216 LNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS---------------DN--VLFLTSPSDAAKI 278 (390)
Q Consensus 216 ~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~---------------~~--v~~~g~~~~~e~~ 278 (390)
-.+..+... -.-++-|-... +.+.. +++.|++ ++ -.++.-.-+.|+.
T Consensus 219 hekflkpag------kstvmeglers---------pafia-ikekgipyeyygnreidkmnlapnqpaqildcyinseml 282 (401)
T 1xv5_A 219 HEKFLKPAG------KSTVMEGLERS---------PAFIA-IKEKGIPYEYYGNREIDKMNLAPNQPAQILDCYINSEML 282 (401)
T ss_dssp HHHTTTTTT------CEEEEECCCCS---------HHHHH-HHHTTCCEEEECGGGGGGCCCSSSCCEEEESCCCHHHHH
T ss_pred HHHhcCccc------hhhhhhhhhcC---------CceEE-EcccCCchhhcCcchhhhhcCCCCCcchhhhheecHHHH
Confidence 887765432 23344443322 33332 2333332 11 2334444467788
Q ss_pred HHHHhcceEEeCCC------CCCCCccHHhhhhcCCCEEEecC-CCcc------cceecCcceee-ecC-CHHHHHHHHH
Q psy12587 279 SLFKFCHCIIYTPS------NEHFGIVPIEAMFCKRPVIAVNS-GGPK------ESVVDGRTGFL-CES-NEEAFAKAMK 343 (390)
Q Consensus 279 ~~~~~adv~v~ps~------~e~~~~~~~Ea~a~G~pvi~~~~-~~~~------e~i~~~~~g~~-~~~-~~~~l~~~i~ 343 (390)
+-|+.+......|. ..+.-.+-+|--|||+..|-... |..- .-+.....|++ ++. |.++--+.|.
T Consensus 283 ermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferik 362 (401)
T 1xv5_A 283 ERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLTSHDSGIIWFDENDMESTFERIK 362 (401)
T ss_dssp HHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGGGSCCSCEEECTTCHHHHHHHHH
T ss_pred HHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcccccCCceEEecCCchHHHHHHHH
Confidence 88888887766654 23455678999999987776442 2111 11223345544 666 9999999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHhhhcCHHHHHH
Q psy12587 344 KIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSI 375 (390)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (390)
++.++.. ++.+-++.|+++.-++-+..-..+
T Consensus 363 elssdra-lydrerekayeflyqhqdssfcfk 393 (401)
T 1xv5_A 363 ELSSDRA-LYDREREKAYEFLYQHQDSSFCFK 393 (401)
T ss_dssp HHHTCHH-HHHHHHHHHHHHHHHHHBHHHHHH
T ss_pred Hhccchh-hhhHHHHHHHHHHHhcccccchhH
Confidence 9999988 999999999988755544444333
No 65
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=96.67 E-value=0.0077 Score=52.19 Aligned_cols=133 Identities=11% Similarity=0.073 Sum_probs=83.1
Q ss_pred CCeEEEEeecccccCCHH--HHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 193 EDIVFLSINRYERKKNLE--LAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~--~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
.+.+++..|.-.+.|.+. .+.+.+..+.++ ++++++.++++.+ . +..++..+.. +++.+.|
T Consensus 178 ~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~-------~~~vvl~~g~~~e----~---~~~~~i~~~~---~~~~l~g 240 (326)
T 2gt1_A 178 GEYAVFLHATTRDDKHWPEEHWRELIGLLADS-------GIRIKLPWGAPHE----E---ERAKRLAEGF---AYVEVLP 240 (326)
T ss_dssp TSEEEEECCCSSGGGSCCHHHHHHHHHHTTTT-------CCEEEECCSSHHH----H---HHHHHHHTTC---TTEEECC
T ss_pred CCEEEEEeCCCCccccCCHHHHHHHHHHHHHC-------CCcEEEecCCHHH----H---HHHHHHHhhC---CcccccC
Confidence 567777777766666554 777888777654 3777776333321 0 2233333332 3467789
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC-------CCcc---cceecCcceeeecC-CHHHHH
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS-------GGPK---ESVVDGRTGFLCES-NEEAFA 339 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~-------~~~~---e~i~~~~~g~~~~~-~~~~l~ 339 (390)
..+-.|+..+++.||++|..- .|..-+ |.|+|+|+|+--. +... ..+. +... .... +++++.
T Consensus 241 ~~sl~el~ali~~a~l~I~~D----SG~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~-~~~~-cm~~I~~~~V~ 313 (326)
T 2gt1_A 241 KMSLEGVARVLAGAKFVVSVD----TGLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCR-APGN-ELSQLTANAVK 313 (326)
T ss_dssp CCCHHHHHHHHHTCSEEEEES----SHHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEE-CGGG-CGGGCCHHHHH
T ss_pred CCCHHHHHHHHHhCCEEEecC----CcHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEec-CCcc-cccCCCHHHHH
Confidence 999999999999999999753 255556 7779999998321 1111 1111 1111 1234 889999
Q ss_pred HHHHHHhcCC
Q psy12587 340 KAMKKIVDND 349 (390)
Q Consensus 340 ~~i~~l~~~~ 349 (390)
+++.++++.-
T Consensus 314 ~~i~~~l~~~ 323 (326)
T 2gt1_A 314 QFIEENAEKA 323 (326)
T ss_dssp HHHHHTTTTC
T ss_pred HHHHHHHHHh
Confidence 9998887653
No 66
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.62 E-value=0.0019 Score=52.14 Aligned_cols=73 Identities=10% Similarity=0.095 Sum_probs=48.3
Q ss_pred cEEEecCCChHHHHHHHH-hcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCc--------ccceecCcceeeecCCH
Q psy12587 265 NVLFLTSPSDAAKISLFK-FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGP--------KESVVDGRTGFLCESNE 335 (390)
Q Consensus 265 ~v~~~g~~~~~e~~~~~~-~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~--------~e~i~~~~~g~~~~~~~ 335 (390)
++...+++++ +..+|+ .||++|.- +...+++|++++|+|.|.-+.... .+.+.+...++.+ ++
T Consensus 115 ~v~v~~f~~~--m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~--~~ 186 (224)
T 2jzc_A 115 KVIGFDFSTK--MQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC--AP 186 (224)
T ss_dssp EEEECCSSSS--HHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE--CS
T ss_pred eEEEeeccch--HHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc--CH
Confidence 4566677755 468999 99999963 245689999999999999765421 1223232234433 45
Q ss_pred HHHHHHHHHH
Q psy12587 336 EAFAKAMKKI 345 (390)
Q Consensus 336 ~~l~~~i~~l 345 (390)
+++.++|.++
T Consensus 187 ~~L~~~i~~l 196 (224)
T 2jzc_A 187 TETGLIAGLR 196 (224)
T ss_dssp CTTTHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666666
No 67
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=92.94 E-value=2 Score=38.88 Aligned_cols=131 Identities=14% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcch------------hHHHHHHHHHHHHcCCCCcEEEecCCCh
Q psy12587 207 KNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIEN------------VEYYKELGVLVKKLKLSDNVLFLTSPSD 274 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~------------~~y~~~~~~~~~~~~l~~~v~~~g~~~~ 274 (390)
+.+..+.+.+....+. .-+++|+|+|.-...-. ..=.+..+.+++++ ++.+.+.|.-.+
T Consensus 219 ~~i~~~~~~~g~~~~~-------~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l--~~~~Vi~GD~td 289 (461)
T 4g65_A 219 NHIRSVMSELQRLEKP-------YRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL--ENTIVFCGDAAD 289 (461)
T ss_dssp TTHHHHHHHTTGGGSC-------CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC--TTSEEEESCTTC
T ss_pred chHHHHHHhhcccccc-------ccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC--CCceEEeccccc
Confidence 4666666665543221 24688888874320000 00003445555554 456778888888
Q ss_pred HHHHH--HHHhcceEEeCCCCCCCCc-cHHhhhhcCCCEEEecC--CCcccceecCcceeeecCCHHHHHHHHHHHhc
Q psy12587 275 AAKIS--LFKFCHCIIYTPSNEHFGI-VPIEAMFCKRPVIAVNS--GGPKESVVDGRTGFLCESNEEAFAKAMKKIVD 347 (390)
Q Consensus 275 ~e~~~--~~~~adv~v~ps~~e~~~~-~~~Ea~a~G~pvi~~~~--~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~ 347 (390)
.++.. =+..+|+++..+..+--.+ +.+-|-.+|++=+.+.. ..+.++++.......+.+ ....+..|.+.+.
T Consensus 290 ~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~~gid~visp-~~~~a~~I~~~i~ 366 (461)
T 4g65_A 290 QELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGGVIDVAISP-QQATISALLTHVR 366 (461)
T ss_dssp HHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCSSSSCEEECH-HHHHHHHHHHHHH
T ss_pred hhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccccccccchhhhhhccccceeeCH-HHHHHHHHHHHhh
Confidence 76543 3467899998766543333 34557778888666543 344555544333344442 2334555555543
No 68
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=89.12 E-value=4.8 Score=29.91 Aligned_cols=69 Identities=9% Similarity=0.121 Sum_probs=39.3
Q ss_pred HHHHHhcceEEeCCCCCCCCccHHh---hhhcCCCEEEecC---C-Ccccceec---CcceeeecC-CHHHHHHHHHHHh
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIVPIE---AMFCKRPVIAVNS---G-GPKESVVD---GRTGFLCES-NEEAFAKAMKKIV 346 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~~~E---a~a~G~pvi~~~~---~-~~~e~i~~---~~~g~~~~~-~~~~l~~~i~~l~ 346 (390)
...+..||+++.--. +.-+.+.+| |.+.|+||++--. + .++-++.. +..-.+.+. + +++.+.|.+.+
T Consensus 63 ~~~i~~aD~vvA~l~-~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~ 140 (152)
T 4fyk_A 63 LNWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYF 140 (152)
T ss_dssp HHHHHHCSEEEEECS-SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHH
T ss_pred HHHHHHCCEEEEeCC-CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHH
Confidence 467899999887433 333345554 7789999999322 1 22212211 111222333 5 78888888776
Q ss_pred cC
Q psy12587 347 DN 348 (390)
Q Consensus 347 ~~ 348 (390)
+.
T Consensus 141 ~~ 142 (152)
T 4fyk_A 141 EA 142 (152)
T ss_dssp C-
T ss_pred Hh
Confidence 54
No 69
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=82.82 E-value=1.9 Score=32.53 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=42.3
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHh---hhhcCCCEEEe--cC---CCc--------ccceec-------------Ccc
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIE---AMFCKRPVIAV--NS---GGP--------KESVVD-------------GRT 327 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~E---a~a~G~pvi~~--~~---~~~--------~e~i~~-------------~~~ 327 (390)
...+..||++|.--. .+.-+.+.+| |.+.|+||++- |. ++. .|..++ ..+
T Consensus 64 ~~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~ 143 (162)
T 3ehd_A 64 TENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLN 143 (162)
T ss_dssp HHHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTT
T ss_pred HHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhC
Confidence 467899999876432 2222445555 78899999994 32 111 111111 127
Q ss_pred eeeecCCHHHHHHHHHHHh
Q psy12587 328 GFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 328 g~~~~~~~~~l~~~i~~l~ 346 (390)
|.++. +.+++.++|...+
T Consensus 144 g~~~~-~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 144 GRVVS-SEEDLLEEIKQRL 161 (162)
T ss_dssp EEEES-SHHHHHHHHHHTC
T ss_pred CeEEe-CHHHHHHHHHHHh
Confidence 88887 8899999888765
No 70
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=81.54 E-value=12 Score=26.70 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh---cceEEeCCCC-C-CCCccHHhhhh
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF---CHCIIYTPSN-E-HFGIVPIEAMF 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~---adv~v~ps~~-e-~~~~~~~Ea~a 305 (390)
.++.|+.+.+ .....+....++.|. .|. ...+..+....+.. .|++++-... + .-|..+++.+.
T Consensus 6 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~ 74 (140)
T 3h5i_A 6 KKILIVEDSK-------FQAKTIANILNKYGY--TVE--IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQ 74 (140)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHH
T ss_pred cEEEEEeCCH-------HHHHHHHHHHHHcCC--EEE--EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHH
Confidence 5677777543 334667777777653 233 33455555666643 5777775443 3 34455555443
Q ss_pred --cCCCEEEe-cCC---CcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 --CKRPVIAV-NSG---GPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 --~G~pvi~~-~~~---~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
-.+|+|.- ... ...+.+..|..+++..+ +.+++..+|..++.
T Consensus 75 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 75 QISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp HHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred hCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 47888773 322 23345556778899999 99999999998875
No 71
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=78.32 E-value=12 Score=26.28 Aligned_cols=108 Identities=13% Similarity=0.225 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH---hcceEEeCCC-CCCCCccHHhhhh-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK---FCHCIIYTPS-NEHFGIVPIEAMF- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~---~adv~v~ps~-~e~~~~~~~Ea~a- 305 (390)
.++.++.+.+ .....++...++.|.. .+... -+..+....+. ..|++++-.. .+.-|..+++.+.
T Consensus 6 ~~iLivdd~~-------~~~~~l~~~L~~~g~~-~v~~~--~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~ 75 (129)
T 3h1g_A 6 MKLLVVDDSS-------TMRRIIKNTLSRLGYE-DVLEA--EHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRS 75 (129)
T ss_dssp CCEEEECSCH-------HHHHHHHHHHHHTTCC-CEEEE--SSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHT
T ss_pred cEEEEEeCCH-------HHHHHHHHHHHHcCCc-EEEEe--CCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 5677776543 3346677777777642 23322 23344444443 3677776433 3344556666554
Q ss_pred ----cCCCEEEec-CCCc---ccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 ----CKRPVIAVN-SGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 ----~G~pvi~~~-~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|... .... .+.+..|..+++..| +++++..++..++..
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 76 DSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp STTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred cCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 257887743 2222 234456778899999 999999999998764
No 72
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=77.11 E-value=8.1 Score=28.18 Aligned_cols=107 Identities=11% Similarity=0.212 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH-----------hcceEEeCCC-CCCCCc
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK-----------FCHCIIYTPS-NEHFGI 298 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~-----------~adv~v~ps~-~e~~~~ 298 (390)
.++.|+.+.+ .....++...++.+....|... -+..+....+. ..|++++-.. .+.-|.
T Consensus 5 ~~ILivddd~-------~~~~~l~~~L~~~g~~~~v~~~--~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~ 75 (152)
T 3heb_A 5 VTIVMIEDDL-------GHARLIEKNIRRAGVNNEIIAF--TDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGI 75 (152)
T ss_dssp CEEEEECCCH-------HHHHHHHHHHHHTTCCCCEEEE--SSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHH
T ss_pred ceEEEEeCCH-------HHHHHHHHHHHhCCCcceEEEe--CCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHH
Confidence 6777777543 3346777777777653345443 34455566663 3677776543 233455
Q ss_pred cHHhhhh-----cCCCEEEec-CCC---cccceecCcceeeecC-CHHHHHHHHHHHh
Q psy12587 299 VPIEAMF-----CKRPVIAVN-SGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIV 346 (390)
Q Consensus 299 ~~~Ea~a-----~G~pvi~~~-~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~ 346 (390)
.+++.+. .++|+|... ... ..+.+..|..+++..+ +.+++.++|.++.
T Consensus 76 ~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 76 DILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp HHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 5665554 367877743 222 2234456778899999 9999999998874
No 73
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=77.07 E-value=9.4 Score=27.07 Aligned_cols=108 Identities=11% Similarity=0.076 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh---------cceEEeCCCC-CCCCccH
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF---------CHCIIYTPSN-EHFGIVP 300 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~---------adv~v~ps~~-e~~~~~~ 300 (390)
.++.++.+.+ .....+....+..|....|... -+..+....+.. .|++++-... +.-|..+
T Consensus 3 ~~ilivdd~~-------~~~~~l~~~L~~~~~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 73 (140)
T 1k68_A 3 KKIFLVEDNK-------ADIRLIQEALANSTVPHEVVTV--RDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREV 73 (140)
T ss_dssp CEEEEECCCH-------HHHHHHHHHHHTCSSCCEEEEE--CSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHH
T ss_pred CeEEEEeCCH-------HHHHHHHHHHHhcCCCceEEEE--CCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHH
Confidence 4666776543 3336677777776542234433 344555666654 6777765433 3334455
Q ss_pred Hhhhh-----cCCCEEEec-CCC---cccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 301 IEAMF-----CKRPVIAVN-SGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 301 ~Ea~a-----~G~pvi~~~-~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
++.+. ..+|+|.-. ... ..+.+..|..+++..+ +.+++..+|..++.
T Consensus 74 ~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 55543 467877643 222 2333456778899999 99999999988764
No 74
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=74.10 E-value=25 Score=26.32 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=25.3
Q ss_pred HHHHHhcceEEeCCC----CCCCCccHHh---hhhcCCCEEEec
Q psy12587 278 ISLFKFCHCIIYTPS----NEHFGIVPIE---AMFCKRPVIAVN 314 (390)
Q Consensus 278 ~~~~~~adv~v~ps~----~e~~~~~~~E---a~a~G~pvi~~~ 314 (390)
...+..||++|.--. .+.-+.+.+| |.+.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 578999998876422 1223346666 678999999943
No 75
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=73.81 E-value=15 Score=26.98 Aligned_cols=107 Identities=12% Similarity=0.171 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh----cceEEeCCCC-CCCCccHHhhh-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF----CHCIIYTPSN-EHFGIVPIEAM- 304 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adv~v~ps~~-e~~~~~~~Ea~- 304 (390)
.+++|+.+.. .....+....++.|. .+. .-.-+..+....+.. .|++++-... +.-|..+++.+
T Consensus 37 ~~Ilivdd~~-------~~~~~l~~~L~~~g~--~v~-~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr 106 (157)
T 3hzh_A 37 FNVLIVDDSV-------FTVKQLTQIFTSEGF--NII-DTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIM 106 (157)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEE-EEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHH
T ss_pred eEEEEEeCCH-------HHHHHHHHHHHhCCC--eEE-EEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHH
Confidence 4566665432 222445555555442 121 012233444444443 3676664332 33344444443
Q ss_pred --hcCCCEEEecCCC----cccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 305 --FCKRPVIAVNSGG----PKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 305 --a~G~pvi~~~~~~----~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
...+|||...... ..+.+..|..+++..+ +.+++.++|.+++.
T Consensus 107 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 107 EFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp HHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred hhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 3467777643222 2234456778899999 99999999998764
No 76
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=73.72 E-value=11 Score=27.39 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh---cceEEeCCC-CCCCCccHHhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF---CHCIIYTPS-NEHFGIVPIEAM-- 304 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~---adv~v~ps~-~e~~~~~~~Ea~-- 304 (390)
.++.|+.+.+ .....+....+. + ..+...-+..+....+.. .|++++-.. .+.-|..+++.+
T Consensus 5 ~~ILivdd~~-------~~~~~l~~~L~~-~----~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 72 (151)
T 3kcn_A 5 ERILLVDDDY-------SLLNTLKRNLSF-D----FEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARL 72 (151)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHTT-T----SEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CeEEEEeCCH-------HHHHHHHHHhcc-C----ceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 5677777543 222444444432 2 223333455565666654 387776433 333455555443
Q ss_pred -hcCCCEEEe-cCCC---cccceecC-cceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 305 -FCKRPVIAV-NSGG---PKESVVDG-RTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 305 -a~G~pvi~~-~~~~---~~e~i~~~-~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
...+|+|.. .... ..+.+..| ..+++..+ +.+++..+|..++....
T Consensus 73 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 73 ISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp HCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 346777763 3222 23344556 57899999 99999999999886443
No 77
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=73.31 E-value=1.7 Score=33.98 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=40.3
Q ss_pred HHHHHhcceEEeCCCCCCCCc--cHHhhhhcCCCEEEecCCCccc-----------ceecCcc-eeeecCCHHHHHHHHH
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGI--VPIEAMFCKRPVIAVNSGGPKE-----------SVVDGRT-GFLCESNEEAFAKAMK 343 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~--~~~Ea~a~G~pvi~~~~~~~~e-----------~i~~~~~-g~~~~~~~~~l~~~i~ 343 (390)
.-+...||.+|... .++|. .+.||+..|+||++-+..+..+ ++..... .+.+.+|++++.+.|.
T Consensus 113 ~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~ 190 (195)
T 1rcu_A 113 FVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIE 190 (195)
T ss_dssp HHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHH
T ss_pred HHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHH
Confidence 45666789776532 23444 4789999999999987544322 2222121 2333338999888876
Q ss_pred HH
Q psy12587 344 KI 345 (390)
Q Consensus 344 ~l 345 (390)
++
T Consensus 191 ~~ 192 (195)
T 1rcu_A 191 QI 192 (195)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 78
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=73.14 E-value=21 Score=25.89 Aligned_cols=110 Identities=10% Similarity=0.098 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHc-CCCCcEEEecCCChHHHHHHHHh---cceEEeCCCC-CCCCccHHhhhh
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKL-KLSDNVLFLTSPSDAAKISLFKF---CHCIIYTPSN-EHFGIVPIEAMF 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~-~l~~~v~~~g~~~~~e~~~~~~~---adv~v~ps~~-e~~~~~~~Ea~a 305 (390)
.++.++.+.+ .....+....++. +. ..+.. .-+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 4 ~~iLivdd~~-------~~~~~l~~~L~~~~g~-~~v~~--~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~ 73 (154)
T 2qsj_A 4 TVVLIVDDHH-------LIRAGAKNLLEGAFSG-MRVEG--AETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLK 73 (154)
T ss_dssp EEEEEECSCH-------HHHHHHHHHHHHHCTT-EEEEE--ESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHH
T ss_pred cEEEEEcCCH-------HHHHHHHHHHHhCCCc-eEEEE--ecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHH
Confidence 6677777543 2335566666665 32 12322 3344555666655 6777765432 333555555443
Q ss_pred ---cCCCEEEec-CCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 ---CKRPVIAVN-SGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 ---~G~pvi~~~-~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
.++|+|... ... ..+.+..|..+++..+ +.+++..+|..++....
T Consensus 74 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 74 RFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp HHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred HhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 467887733 221 2334456778889888 99999999999987543
No 79
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=72.59 E-value=21 Score=25.83 Aligned_cols=77 Identities=12% Similarity=0.162 Sum_probs=45.5
Q ss_pred hHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh---cCCCEEEec-CC---CcccceecCcceeeecC-CHHHHHHHH
Q psy12587 274 DAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF---CKRPVIAVN-SG---GPKESVVDGRTGFLCES-NEEAFAKAM 342 (390)
Q Consensus 274 ~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a---~G~pvi~~~-~~---~~~e~i~~~~~g~~~~~-~~~~l~~~i 342 (390)
..+....+.. .|++++-.. .+.-|..+++.+. ..+|+|... .. ...+.+..|..+++..+ +.+++..+|
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i 134 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTL 134 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHH
Confidence 3444444433 456655433 2333444444433 356776633 22 22344566778899999 999999999
Q ss_pred HHHhcCCh
Q psy12587 343 KKIVDNDG 350 (390)
Q Consensus 343 ~~l~~~~~ 350 (390)
..++....
T Consensus 135 ~~~~~~~~ 142 (150)
T 4e7p_A 135 HTVLEGRK 142 (150)
T ss_dssp HHHHTTCC
T ss_pred HHHHcCCE
Confidence 99987543
No 80
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=71.16 E-value=25 Score=25.04 Aligned_cols=111 Identities=11% Similarity=0.036 Sum_probs=64.8
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh-------cceEEeCCC-CCCCCccHHh
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF-------CHCIIYTPS-NEHFGIVPIE 302 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~-------adv~v~ps~-~e~~~~~~~E 302 (390)
.++.|+.+.+ .....+.......+....|.. .-+..+....+.. .|++++-.. .+.-|..+++
T Consensus 10 ~~iLivdd~~-------~~~~~l~~~l~~~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~ 80 (146)
T 3ilh_A 10 DSVLLIDDDD-------IVNFLNTTIIRMTHRVEEIQS--VTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELID 80 (146)
T ss_dssp EEEEEECSCH-------HHHHHHHHHHHTTCCEEEEEE--ESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHH
T ss_pred ceEEEEeCCH-------HHHHHHHHHHHhcCCCeeeee--cCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 6777777543 223556666666543112332 3345555666665 677777543 3344555555
Q ss_pred hhh-------cCCCEEEecCCCc----ccceecC-cceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 303 AMF-------CKRPVIAVNSGGP----KESVVDG-RTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 303 a~a-------~G~pvi~~~~~~~----~e~i~~~-~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
.+. ..+|+|....... .+.+..+ ..+++..+ +.+++.++|.+......
T Consensus 81 ~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 81 LFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp HHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred HHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 443 4677776433222 2334455 67799999 99999999999887654
No 81
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=68.53 E-value=24 Score=29.96 Aligned_cols=86 Identities=9% Similarity=0.014 Sum_probs=44.9
Q ss_pred CeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC
Q psy12587 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS 273 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~ 273 (390)
+..|+|+|. .+..+..++.|.+...+ +..++.-...+..+........+++.+.++|++ +.-...+.
T Consensus 7 ~mrivf~Gt------~~fa~~~L~~L~~~~~~-----v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIp--v~~~~~~~ 73 (318)
T 3q0i_A 7 SLRIVFAGT------PDFAARHLAALLSSEHE-----IIAVYTQPERPAGRGKKLTASPVKTLALEHNVP--VYQPENFK 73 (318)
T ss_dssp CCEEEEECC------SHHHHHHHHHHHTSSSE-----EEEEECCCC---------CCCHHHHHHHHTTCC--EECCSCSC
T ss_pred CCEEEEEec------CHHHHHHHHHHHHCCCc-----EEEEEcCCCCcccccccCCCCHHHHHHHHcCCC--EEccCcCC
Confidence 457888886 35566777777665332 544444211111000000013577888888875 32233345
Q ss_pred hHHHHHHHHh--cceEEeCCC
Q psy12587 274 DAAKISLFKF--CHCIIYTPS 292 (390)
Q Consensus 274 ~~e~~~~~~~--adv~v~ps~ 292 (390)
+.++.+.++. .|++++.+.
T Consensus 74 ~~~~~~~l~~~~~Dliv~~~y 94 (318)
T 3q0i_A 74 SDESKQQLAALNADLMVVVAY 94 (318)
T ss_dssp SHHHHHHHHTTCCSEEEESSC
T ss_pred CHHHHHHHHhcCCCEEEEeCc
Confidence 5566666654 677776554
No 82
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=68.07 E-value=17 Score=30.76 Aligned_cols=85 Identities=9% Similarity=0.057 Sum_probs=40.3
Q ss_pred eEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCCh
Q psy12587 195 IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSD 274 (390)
Q Consensus 195 ~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~ 274 (390)
..|+|+|.- +..+.+++.|.+...+ +..++.-......+........+++.+.++|++ |.-...+.+
T Consensus 3 mrivf~Gtp------~fa~~~L~~L~~~~~~-----v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIp--v~~~~~~~~ 69 (314)
T 3tqq_A 3 LKIVFAGTP------QFAVPTLRALIDSSHR-----VLAVYTQPDRPSGRGQKIMESPVKEIARQNEIP--IIQPFSLRD 69 (314)
T ss_dssp CEEEEEECS------GGGHHHHHHHHHSSSE-----EEEEECCCC----------CCHHHHHHHHTTCC--EECCSCSSS
T ss_pred cEEEEECCC------HHHHHHHHHHHHCCCe-----EEEEEeCCCCccccCCccCCCHHHHHHHHcCCC--EECcccCCC
Confidence 357788862 3445555555554322 444443211110000000114567788888875 332333455
Q ss_pred HHHHHHHHh--cceEEeCCC
Q psy12587 275 AAKISLFKF--CHCIIYTPS 292 (390)
Q Consensus 275 ~e~~~~~~~--adv~v~ps~ 292 (390)
.++.+.++. .|++++.+.
T Consensus 70 ~~~~~~l~~~~~Dliv~~~~ 89 (314)
T 3tqq_A 70 EVEQEKLIAMNADVMVVVAY 89 (314)
T ss_dssp HHHHHHHHTTCCSEEEEESC
T ss_pred HHHHHHHHhcCCCEEEEcCc
Confidence 565666653 566666544
No 83
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=67.83 E-value=29 Score=24.50 Aligned_cols=106 Identities=8% Similarity=0.043 Sum_probs=64.0
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-CChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-PSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF 305 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~-~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a 305 (390)
..++.|+-+.+.. ...+....++.|.. | .+. -+-.+..+.+.. .|++++--. .+.-|..+++.+.
T Consensus 8 ~~rILiVdD~~~~-------~~~l~~~L~~~G~~--v--~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr 76 (123)
T 2lpm_A 8 RLRVLVVEDESMI-------AMLIEDTLCELGHE--V--AATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILA 76 (123)
T ss_dssp CCCEEEESSSTTT-------SHHHHHHHHHHCCC--C--CBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHH
T ss_pred CCEEEEEeCCHHH-------HHHHHHHHHHCCCE--E--EEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 4677888766543 16677777777642 2 222 234555566654 467776433 2344556665553
Q ss_pred -cCCCEEE-ecCCCcccceecCcceeeecC-CHHHHHHHHHHHh
Q psy12587 306 -CKRPVIA-VNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIV 346 (390)
Q Consensus 306 -~G~pvi~-~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~ 346 (390)
.++|||. |..+......+-+..+++..| +++++..+|.+++
T Consensus 77 ~~~ipvI~lTa~~~~~~~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 77 ERNVPFIFATGYGSKGLDTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp HTCCSSCCBCTTCTTSCCSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred cCCCCEEEEecCccHHHHHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 5789876 333322222344667899999 9999999987764
No 84
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=67.71 E-value=25 Score=24.28 Aligned_cols=105 Identities=14% Similarity=0.189 Sum_probs=61.9
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh---
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF--- 305 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a--- 305 (390)
++.++.+.+ .....+....++.|. .|. ..-+..+..+.+.. .|++++-.. .+.-|..+++.+.
T Consensus 4 ~ILivdd~~-------~~~~~l~~~l~~~g~--~v~--~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 4 KVLLVDDSA-------VLRKIVSFNLKKEGY--EVI--EAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp EEEEECSCH-------HHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred eEEEEeCCH-------HHHHHHHHHHHHCCc--EEE--EeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 455665432 233556666666553 233 22344555566654 567776433 2334556666552
Q ss_pred --cCCCEEEe-cCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 --CKRPVIAV-NSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 --~G~pvi~~-~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+|+|.. ..... .+.+..|..+++..| +.+++..++.++++
T Consensus 73 ~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 73 EWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp TTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 35787763 32222 233456778899999 99999999998764
No 85
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=67.54 E-value=32 Score=24.76 Aligned_cols=107 Identities=12% Similarity=0.106 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH---------hcceEEeCCCC-CCCCccH
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK---------FCHCIIYTPSN-EHFGIVP 300 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~---------~adv~v~ps~~-e~~~~~~ 300 (390)
.++.++.+.+ .....++...+..+....|. ..-+..+....+. ..|++++-... +.-|..+
T Consensus 9 ~~ILivdd~~-------~~~~~l~~~L~~~~~~~~v~--~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l 79 (149)
T 1i3c_A 9 KVILLVEDSK-------ADSRLVQEVLKTSTIDHELI--ILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREV 79 (149)
T ss_dssp EEEEEECCCH-------HHHHHHHHHHHSCCSCEEEE--EECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHH
T ss_pred CeEEEEECCH-------HHHHHHHHHHHhcCCCccEE--EeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHH
Confidence 6777777543 23355666666544311232 2334455556665 36887774332 2334555
Q ss_pred Hhhhh-----cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHh
Q psy12587 301 IEAMF-----CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIV 346 (390)
Q Consensus 301 ~Ea~a-----~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~ 346 (390)
++.+. ..+|+|.- .... ..+.++.|..+++..+ +.+++..+|..++
T Consensus 80 ~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 80 LAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp HHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 55553 35677763 3222 2334456778999999 9999999988764
No 86
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=67.13 E-value=29 Score=24.17 Aligned_cols=106 Identities=11% Similarity=0.083 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhhc-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMFC- 306 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a~- 306 (390)
.++.|+.+.+ .....+....+ .+ -.+. -.-+..+....+.. .|++++-.. .+.-|..+++.+..
T Consensus 5 ~~ilivdd~~-------~~~~~l~~~l~-~~--~~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 72 (133)
T 3nhm_A 5 PKVLIVENSW-------TMRETLRLLLS-GE--FDCT--TAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSE 72 (133)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHT-TT--SEEE--EESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHS
T ss_pred CEEEEEcCCH-------HHHHHHHHHHh-CC--cEEE--EECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 5677777543 22244444443 22 2233 23344555566554 567776433 23345555554442
Q ss_pred ----CCCEEEecC-C--CcccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 307 ----KRPVIAVNS-G--GPKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 307 ----G~pvi~~~~-~--~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
++|+|.... . ...+.+..|..+++..+ +.+++..+|.+++..
T Consensus 73 ~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 73 PTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp TTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 678877332 1 12344556677899999 999999999998764
No 87
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=66.84 E-value=26 Score=23.53 Aligned_cols=105 Identities=7% Similarity=0.155 Sum_probs=60.2
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh---
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF--- 305 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a--- 305 (390)
++.++.+.+ .....+....+..|. .+... -+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 3 ~iliv~~~~-------~~~~~l~~~l~~~g~--~v~~~--~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 3 HILLLEEED-------EAATVVCEMLTAAGF--KVIWL--VDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp EEEEECCCH-------HHHHHHHHHHHHTTC--EEEEE--SCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred EEEEEeCCH-------HHHHHHHHHHHhCCc--EEEEe--cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 456666443 333566666666654 34332 344554555543 5777664332 333455565553
Q ss_pred --cCCCEEE-ecCCCcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 --CKRPVIA-VNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 --~G~pvi~-~~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+|+|. ++.....+....|..+++..+ +.+++...+..++.
T Consensus 72 ~~~~~~ii~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 72 ADPHPPLVLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp CCSSCCCEEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred ccCCCCEEEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 4677776 333222245555667888888 99999999887654
No 88
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=66.68 E-value=52 Score=27.47 Aligned_cols=109 Identities=10% Similarity=0.051 Sum_probs=63.7
Q ss_pred EEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-----C
Q psy12587 198 LSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-----P 272 (390)
Q Consensus 198 ~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~-----~ 272 (390)
+.+|.-....+-..+++.+-++... + +.++.++...... ...|.+.+.+..+++|. ..|..+.- .
T Consensus 30 ~iiGGgedk~~~~~i~~~~v~lagg-~-----~~~I~~IptAs~~---~~~~~~~~~~~f~~lG~-~~v~~L~i~~r~~a 99 (291)
T 3en0_A 30 LIIGGAEDKVHGREILQTFWSRSGG-N-----DAIIGIIPSASRE---PLLIGERYQTIFSDMGV-KELKVLDIRDRAQG 99 (291)
T ss_dssp EEECSSCCSSSCCHHHHHHHHHTTG-G-----GCEEEEECTTCSS---HHHHHHHHHHHHHHHCC-SEEEECCCCSGGGG
T ss_pred EEEECCCCccChHHHHHHHHHHcCC-C-----CCeEEEEeCCCCC---hHHHHHHHHHHHHHcCC-CeeEEEEecCcccc
Confidence 3344433322334455555444332 1 2567777654432 34677788888888887 34554432 3
Q ss_pred ChHHHHHHHHhcceEEeCCC--------CCCCCc--cHHhhhhcC-CCEEEecCC
Q psy12587 273 SDAAKISLFKFCHCIIYTPS--------NEHFGI--VPIEAMFCK-RPVIAVNSG 316 (390)
Q Consensus 273 ~~~e~~~~~~~adv~v~ps~--------~e~~~~--~~~Ea~a~G-~pvi~~~~~ 316 (390)
+++++.+.+..||+++++.= +...++ .+-|+...| +|++.+..|
T Consensus 100 ~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAG 154 (291)
T 3en0_A 100 DDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAG 154 (291)
T ss_dssp GCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHH
T ss_pred CCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHH
Confidence 45677889999999888631 122232 456777888 888776543
No 89
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=65.97 E-value=14 Score=26.90 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc----c-eEEeCCCCCCCCccHHhhhh-cCCCEEEecCCC--cc
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC----H-CIIYTPSNEHFGIVPIEAMF-CKRPVIAVNSGG--PK 319 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a----d-v~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~~~--~~ 319 (390)
+..+.+++.+.++|+ .+.+...=...++.+.+.+| | +++.|.-+...+..+.+|++ .++|+|=--... .+
T Consensus 31 di~~~l~~~a~~~g~--~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aR 108 (146)
T 1h05_A 31 ELVALIEREAAELGL--KAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAR 108 (146)
T ss_dssp HHHHHHHHHHHHTTC--EEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHHTCCSCEEEEESSCGGGS
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhCCCCEEEEEecCcccc
Confidence 444666777777765 46666555556666666554 4 67778777778899999987 689998733221 12
Q ss_pred c------ceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 320 E------SVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 320 e------~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
| ++.+...|.++-.-.+...-++..++
T Consensus 109 E~FRh~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 141 (146)
T 1h05_A 109 EEFRRHSYLSPIATGVIVGLGIQGYLLALRYLA 141 (146)
T ss_dssp CGGGGCCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccccccccceeEEEEecCHHHHHHHHHHHH
Confidence 3 33333456555435566666665554
No 90
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=65.91 E-value=49 Score=26.38 Aligned_cols=96 Identities=16% Similarity=0.060 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceE
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCI 287 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~ 287 (390)
-++...++++.+.+. .-++.++..+... .+...|...+.+..+++|. .+..+-..++ ..+.+..||.+
T Consensus 16 ~l~~~~~~l~~~~~~-------~~~i~iI~~a~~~-~~~~~~~~~~~~al~~lG~--~~~~v~~~~d--~~~~l~~ad~I 83 (229)
T 1fy2_A 16 WLEHALPLIANQLNG-------RRSAVFIPFAGVT-QTWDEYTDKTAEVLAPLGV--NVTGIHRVAD--PLAAIEKAEII 83 (229)
T ss_dssp TTTTTHHHHHHHHTT-------CCEEEEECTTCCS-SCHHHHHHHHHHHHGGGTC--EEEETTSSSC--HHHHHHHCSEE
T ss_pred HHHHHHHHHHHHhcC-------CCeEEEEECCCCC-CCHHHHHHHHHHHHHHCCC--EEEEEecccc--HHHHHhcCCEE
Confidence 344456666665543 2567777665321 2244667778888888885 2433322232 24788999999
Q ss_pred EeCCCCC---------CCCc--cHHhhhhcCCCEEEecCC
Q psy12587 288 IYTPSNE---------HFGI--VPIEAMFCKRPVIAVNSG 316 (390)
Q Consensus 288 v~ps~~e---------~~~~--~~~Ea~a~G~pvi~~~~~ 316 (390)
++|. -+ ..++ .+-|+...|+|++.+-.|
T Consensus 84 ~lpG-G~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 84 IVGG-GNTFQLLKESRERGLLAPMADRVKRGALYIGWSAG 122 (229)
T ss_dssp EECC-SCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred EECC-CcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHH
Confidence 9986 22 1233 456777889999987643
No 91
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=65.82 E-value=34 Score=24.55 Aligned_cols=108 Identities=13% Similarity=0.271 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh-
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF- 305 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a- 305 (390)
+.++.|+-+.+ .....++...++.|.. .|... -+..+..+.++. .|++++--. .+.-|.-+++.+-
T Consensus 12 ~~rILiVDD~~-------~~r~~l~~~L~~~G~~-~v~~a--~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~ 81 (134)
T 3to5_A 12 NMKILIVDDFS-------TMRRIVKNLLRDLGFN-NTQEA--DDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRA 81 (134)
T ss_dssp TCCEEEECSCH-------HHHHHHHHHHHHTTCC-CEEEE--SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCH-------HHHHHHHHHHHHcCCc-EEEEE--CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 47788876543 2335566777777652 23322 233444455554 567766433 2334556666553
Q ss_pred ----cCCCEEEecC-CCc---ccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 ----CKRPVIAVNS-GGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 ----~G~pvi~~~~-~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+|||.-.. +.. .+.++.|..+++..| +++++.++|.++++
T Consensus 82 ~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 82 DEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp STTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4688887433 322 233456788999999 99999999998864
No 92
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=65.67 E-value=26 Score=25.77 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc----c-eEEeCCCCCCCCccHHhhh----hcCCCEEEecCCC--c
Q psy12587 250 YKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC----H-CIIYTPSNEHFGIVPIEAM----FCKRPVIAVNSGG--P 318 (390)
Q Consensus 250 ~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a----d-v~v~ps~~e~~~~~~~Ea~----a~G~pvi~~~~~~--~ 318 (390)
.+.+++.+.++|+ .+.+...=...++.+.+.+| | +++.|.-+...+..+.+|+ +.++|+|=--... .
T Consensus 35 ~~~l~~~a~~~g~--~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~a 112 (151)
T 3u80_A 35 RKLCAEWGKDLGL--EVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSA 112 (151)
T ss_dssp HHHHHHHHHHTTE--EEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESSCCC-
T ss_pred HHHHHHHHHHcCC--EEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcCCccc
Confidence 3455556666654 35555444455565655543 4 6777888888899999994 4699998733221 2
Q ss_pred cc------ceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 319 KE------SVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 319 ~e------~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
+| ++.+...|.++-.-.+...-++..++
T Consensus 113 RE~FRh~S~~s~~a~G~I~G~G~~gY~lAl~~~~ 146 (151)
T 3u80_A 113 RDEFRKRSVISPVATGTITGMGFYGYKLALDAVA 146 (151)
T ss_dssp --------CSCCCCSEEEESSTTHHHHHHHHHHH
T ss_pred ccchhhcccccccceEEEEecChHHHHHHHHHHH
Confidence 33 33333455554335555555555443
No 93
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=64.91 E-value=27 Score=25.30 Aligned_cols=108 Identities=11% Similarity=0.158 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhh---
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAM--- 304 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~--- 304 (390)
.++.++.+.+ .....+.......|. .|.. .-+..+....+.. .|++++-... +.-|..+++.+
T Consensus 4 ~~ILivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~ 72 (155)
T 1qkk_A 4 PSVFLIDDDR-------DLRKAMQQTLELAGF--TVSS--FASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILAL 72 (155)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEEE--ESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCH-------HHHHHHHHHHHHcCc--EEEE--ECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 5677776543 333566667766654 2332 2344544454443 5777664332 33344455444
Q ss_pred hcCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 305 FCKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 305 a~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
...+|+|.. .... ..+.+..|..+++..+ +.+++...|..++...
T Consensus 73 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 73 DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 347888764 3222 2334456778899999 9999999999987543
No 94
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=64.77 E-value=33 Score=25.14 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc-----c-eEEeCCCCCCCCccHHhhhh-cCCCEEE---ecCCC
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC-----H-CIIYTPSNEHFGIVPIEAMF-CKRPVIA---VNSGG 317 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a-----d-v~v~ps~~e~~~~~~~Ea~a-~G~pvi~---~~~~~ 317 (390)
+..+.+++.+.++|+ .+.+...=...++.+.+..| | +++.|.-+...+..+.+|++ .++|+|= |+.-.
T Consensus 28 di~~~l~~~a~~~g~--~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~a 105 (149)
T 2uyg_A 28 ELEALCEAWGAELGL--GVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVVEVHLTNLHA 105 (149)
T ss_dssp HHHHHHHHHHHHTTC--CEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGG
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCEEEEEecCccc
Confidence 455677777778776 37776666667777777765 3 56778777788899999987 5899987 33321
Q ss_pred c-----ccceecCcceeeecCCHHHHHHHHHHHhc
Q psy12587 318 P-----KESVVDGRTGFLCESNEEAFAKAMKKIVD 347 (390)
Q Consensus 318 ~-----~e~i~~~~~g~~~~~~~~~l~~~i~~l~~ 347 (390)
- ..++.+...|.++-.-.+...-++..+++
T Consensus 106 RE~FRh~S~~s~~a~GvI~G~G~~gY~lAl~~~~~ 140 (149)
T 2uyg_A 106 REEFRRHSVTAPACRGIVSGFGPLSYKLALVYLAE 140 (149)
T ss_dssp SCGGGGCCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred ccccccccccccceeEEEEecCHHHHHHHHHHHHH
Confidence 1 12333334565554456666666666543
No 95
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=64.62 E-value=57 Score=28.31 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=53.4
Q ss_pred HHHHHHhcceEEeC--CCCCCC-CccHHhhhhcCCCEEEecCCCcccceecCcceeeecC--CHHHHHHHHHHHhcCChh
Q psy12587 277 KISLFKFCHCIIYT--PSNEHF-GIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES--NEEAFAKAMKKIVDNDGN 351 (390)
Q Consensus 277 ~~~~~~~adv~v~p--s~~e~~-~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~--~~~~l~~~i~~l~~~~~~ 351 (390)
..++++.....+.. |..+.+ .=++.+|+.+|+-.|....+...+++.. ..-+-+.+ +++++++-|..+-+|++
T Consensus 225 ~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~Pp-~SfI~~~dF~s~~~La~yL~~L~~n~~- 302 (371)
T 2nzw_A 225 KNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNP-KSFVNVHDFKNFDEAIDYIKYLHTHKN- 302 (371)
T ss_dssp HHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTSCG-GGSEEGGGSSSHHHHHHHHHHHHTCHH-
T ss_pred HHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchhhhCCC-CceEEcccCCCHHHHHHHHHHHhcCHH-
Confidence 35778888877764 322222 3378899999976666555566666643 23233444 89999999999999988
Q ss_pred HHHHHH
Q psy12587 352 IIQQFS 357 (390)
Q Consensus 352 ~~~~~~ 357 (390)
++.+.-
T Consensus 303 ~Y~~y~ 308 (371)
T 2nzw_A 303 AYLDML 308 (371)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 96
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=64.20 E-value=35 Score=24.13 Aligned_cols=107 Identities=14% Similarity=0.215 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH----hcceEEeCCC-CCCCCccHHhhhh
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK----FCHCIIYTPS-NEHFGIVPIEAMF 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~----~adv~v~ps~-~e~~~~~~~Ea~a 305 (390)
.++.|+.+.+ .....+....++.+. .+.. .-+..+....+. ..|++++-.. .+.-|..+++.+.
T Consensus 4 ~~ilivdd~~-------~~~~~l~~~l~~~g~--~v~~--~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~ 72 (143)
T 3jte_A 4 AKILVIDDES-------TILQNIKFLLEIDGN--EVLT--ASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIK 72 (143)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEEE--ESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHH
T ss_pred CEEEEEcCCH-------HHHHHHHHHHHhCCc--eEEE--eCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 5677776543 334667777777653 2332 234455556665 4677776443 3334455554443
Q ss_pred ---cCCCEEEec-CCC---cccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 ---CKRPVIAVN-SGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 ---~G~pvi~~~-~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|.-. ... ..+.+..|..+++..+ +.+++..+|..++..
T Consensus 73 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 73 KITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp HHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HhCCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 467777633 222 2344566778899999 999999999998764
No 97
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=63.79 E-value=21 Score=25.52 Aligned_cols=108 Identities=10% Similarity=0.150 Sum_probs=64.7
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh------------cceEEeCCCC-CCCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF------------CHCIIYTPSN-EHFG 297 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~------------adv~v~ps~~-e~~~ 297 (390)
.++.++.+.+ .....+....++.|....|... -+..+....+.. .|++++-... +.-|
T Consensus 7 ~~iLivdd~~-------~~~~~l~~~L~~~g~~~~v~~~--~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g 77 (149)
T 1k66_A 7 QPLLVVEDSD-------EDFSTFQRLLQREGVVNPIYRC--ITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDG 77 (149)
T ss_dssp SCEEEECCCH-------HHHHHHHHHHHHTTBCSCEEEE--CSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCH
T ss_pred ccEEEEECCH-------HHHHHHHHHHHHcCCCceEEEE--CCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCH
Confidence 5667776543 3336677777776642234433 344555666653 5777765433 3344
Q ss_pred ccHHhhhh-----cCCCEEEec-CCC---cccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 298 IVPIEAMF-----CKRPVIAVN-SGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 298 ~~~~Ea~a-----~G~pvi~~~-~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+++.+. ..+|+|... ... ..+.+..|..+++..+ +.+++...|..++.
T Consensus 78 ~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 78 REVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp HHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 55555554 457777643 222 2333456778899999 99999999988764
No 98
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=63.61 E-value=32 Score=24.20 Aligned_cols=109 Identities=9% Similarity=0.179 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC------CCCCccHHh
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN------EHFGIVPIE 302 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~------e~~~~~~~E 302 (390)
.++.++.+.+ .....+....++.|. .|. ..-+..+....+.. .|++++-... +.-|..+++
T Consensus 4 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~ 72 (140)
T 2qr3_A 4 GTIIIVDDNK-------GVLTAVQLLLKNHFS--KVI--TLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLH 72 (140)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHTTTSS--EEE--EECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHH
T ss_pred ceEEEEeCCH-------HHHHHHHHHHHhCCc--EEE--EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHH
Confidence 5677777543 233556666666543 233 33445555666665 4666664332 333444554
Q ss_pred hhh---cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 303 AMF---CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 303 a~a---~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
.+. ..+|+|.. .... ..+.+..|..+++..+ +.+++..+|..++....
T Consensus 73 ~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 73 EIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp HHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred HHHhhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 443 46887773 3222 2334456778899999 99999999999987654
No 99
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=62.92 E-value=36 Score=23.72 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEE-EecCCChHHHHHHHH--hcceEEeCCC-CCCCCccHHhhhh-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVL-FLTSPSDAAKISLFK--FCHCIIYTPS-NEHFGIVPIEAMF- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~-~~g~~~~~e~~~~~~--~adv~v~ps~-~e~~~~~~~Ea~a- 305 (390)
+++.++.+.+ .....+....++.|. .+. ..... .+....+. ..|++++-.. .+.-|..+++.+.
T Consensus 2 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~~~~~~~--~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~ 70 (134)
T 3f6c_A 2 LNAIIIDDHP-------LAIAAIRNLLIKNDI--EILAELTEG--GSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRK 70 (134)
T ss_dssp EEEEEECCCH-------HHHHHHHHHHHHTTE--EEEEEESSS--TTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHH
T ss_pred eEEEEEcCCH-------HHHHHHHHHHhhCCc--EEEEEcCCH--HHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHh
Confidence 4566666543 333566666666652 222 22222 22233333 4677766433 2334445554443
Q ss_pred --cCCCEEE-ecCC---CcccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 --CKRPVIA-VNSG---GPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 --~G~pvi~-~~~~---~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..+|+|. |... ...+.+..|..+++..+ +.+++.++|..+++...
T Consensus 71 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 71 RQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp TTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 3567766 3322 23344556778899999 99999999999987543
No 100
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=62.75 E-value=37 Score=23.92 Aligned_cols=107 Identities=7% Similarity=0.119 Sum_probs=63.7
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh-
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF- 305 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a- 305 (390)
..++.++.+.+ .....+....+..|. .|. ..-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 7 ~~~iLivdd~~-------~~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 7 KGDVMIVDDDA-------HVRIAVKTILSDAGF--HII--SADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp CCEEEEECSCH-------HHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEcCCH-------HHHHHHHHHHHHCCe--EEE--EeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 36777777543 333566667766654 233 23344555566654 466666433 2334455565553
Q ss_pred ----cCCCEEE-ecC---CCcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 ----CKRPVIA-VNS---GGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 ----~G~pvi~-~~~---~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+|+|. +.. ....+.+..|..+++..+ +.+++..+|..++.
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 76 NSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp TTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred hcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3567776 332 223444556677888888 99999999988764
No 101
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=62.64 E-value=20 Score=25.66 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=64.5
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh-
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF- 305 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a- 305 (390)
..++.|+.+.+ .....+....++.+....+... -+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 5 ~~~ILivdd~~-------~~~~~l~~~L~~~~~~~~v~~~--~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~ 75 (144)
T 3kht_A 5 SKRVLVVEDNP-------DDIALIRRVLDRKDIHCQLEFV--DNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRK 75 (144)
T ss_dssp CEEEEEECCCH-------HHHHHHHHHHHHTTCCEEEEEE--SSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHS
T ss_pred CCEEEEEeCCH-------HHHHHHHHHHHhcCCCeeEEEE--CCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 36777777543 3336677777776643223332 344555566654 5677764432 334555665554
Q ss_pred ----cCCCEEEecCCCc----ccceecCcceeeecC--CHHHHHHHHHHHhc
Q psy12587 306 ----CKRPVIAVNSGGP----KESVVDGRTGFLCES--NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 ----~G~pvi~~~~~~~----~e~i~~~~~g~~~~~--~~~~l~~~i~~l~~ 347 (390)
.++|+|....... .+.+..|..+++..+ +.+++.++|..+++
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 76 PGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp SSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred cccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 3678877433222 234456777888876 78999999988764
No 102
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=62.59 E-value=9.5 Score=27.25 Aligned_cols=109 Identities=9% Similarity=0.131 Sum_probs=64.1
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHH-cCCCCcEEEecCCChHHHHHHHHh---cceEEeCCCCC--CCCccHHhhh
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKK-LKLSDNVLFLTSPSDAAKISLFKF---CHCIIYTPSNE--HFGIVPIEAM 304 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~-~~l~~~v~~~g~~~~~e~~~~~~~---adv~v~ps~~e--~~~~~~~Ea~ 304 (390)
.++.|+.+.+ .....++...++ .+. .|. ..-+..+....+.. .|++++-.... .-|..+++.+
T Consensus 5 ~~ilivdd~~-------~~~~~l~~~L~~~~~~--~v~--~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l 73 (140)
T 3lua_A 5 GTVLLIDYFE-------YEREKTKIIFDNIGEY--DFI--EVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAI 73 (140)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHHCCC--EEE--EECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHH
T ss_pred CeEEEEeCCH-------HHHHHHHHHHHhccCc--cEE--EECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHH
Confidence 5677776543 233556666666 543 233 23344555555554 57777644322 2344455443
Q ss_pred -----hcCCCEEEecCCC----cccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 305 -----FCKRPVIAVNSGG----PKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 305 -----a~G~pvi~~~~~~----~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
...+|+|...... ..+.+..|..+++..+ +.+++..+|..++....
T Consensus 74 ~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 74 RNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp HHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred HhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 3478888743222 2334456778899999 99999999999987654
No 103
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=62.59 E-value=18 Score=26.96 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=51.2
Q ss_pred EEEecCCChHHHHHHHHhc-----c-eEEeCCCCCCCCccHHhhhh-cCCCEEEecCCC--ccc------ceecCcceee
Q psy12587 266 VLFLTSPSDAAKISLFKFC-----H-CIIYTPSNEHFGIVPIEAMF-CKRPVIAVNSGG--PKE------SVVDGRTGFL 330 (390)
Q Consensus 266 v~~~g~~~~~e~~~~~~~a-----d-v~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~~~--~~e------~i~~~~~g~~ 330 (390)
+.+...=...++.+.+.+| | +++.|.-+...+..+.+|++ .++|+|=--... .+| ++.+...|.+
T Consensus 61 v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~~a~GvI 140 (167)
T 3kip_A 61 VLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSDKAVAVI 140 (167)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEE
T ss_pred EEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccccccceEEE
Confidence 4444444445555555554 3 67778777778889999884 689998733222 233 3333445666
Q ss_pred ecCCHHHHHHHHHHHhcC
Q psy12587 331 CESNEEAFAKAMKKIVDN 348 (390)
Q Consensus 331 ~~~~~~~l~~~i~~l~~~ 348 (390)
+-.-.+...-++..+++.
T Consensus 141 ~G~G~~gY~lAl~~l~~~ 158 (167)
T 3kip_A 141 CGLGVYGYTAAIEYALNY 158 (167)
T ss_dssp ESSTTHHHHHHHHHHTTC
T ss_pred EeCChhhHHHHHHHHHHH
Confidence 544677777777777653
No 104
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=61.90 E-value=40 Score=28.55 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCC
Q psy12587 252 ELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPS 292 (390)
Q Consensus 252 ~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~ 292 (390)
.+++.+.++|++ +.-...+.++++.+.++ +.|++++.+.
T Consensus 50 ~v~~~A~~~gIp--v~~~~~~~~~~~~~~l~~~~~Dliv~~~y 90 (314)
T 1fmt_A 50 PVKVLAEEKGLP--VFQPVSLRPQENQQLVAELQADVMVVVAY 90 (314)
T ss_dssp HHHHHHHHTTCC--EECCSCSCSHHHHHHHHHTTCSEEEEESC
T ss_pred HHHHHHHHcCCc--EEecCCCCCHHHHHHHHhcCCCEEEEeec
Confidence 467777777764 22222333455555554 3566665443
No 105
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=61.73 E-value=27 Score=26.22 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh----cc-eEEeCCCCCCCCccHHhhhh-cCCCEEEecCC--Cccc-
Q psy12587 250 YKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF----CH-CIIYTPSNEHFGIVPIEAMF-CKRPVIAVNSG--GPKE- 320 (390)
Q Consensus 250 ~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----ad-v~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~~--~~~e- 320 (390)
.+.+++.+.++|+ .+.+...=...++.+.+.+ +| +++.|.-+...+..+.+|++ .++|+|=--.. -.+|
T Consensus 59 ~~~l~~~a~~~G~--~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~ 136 (172)
T 3n8k_A 59 VALIEREAAELGL--KAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREE 136 (172)
T ss_dssp HHHHHHHHHHTTC--EEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHTTCCSCEEEEESSCTTSSCG
T ss_pred HHHHHHHHHHcCC--EEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHhCCCCEEEEEcCCchhccc
Confidence 3555556666664 3555544445555555554 34 67778777778889999985 68999873322 1233
Q ss_pred -----ceecCcceeeecCCHHHHHHHHHHHhc
Q psy12587 321 -----SVVDGRTGFLCESNEEAFAKAMKKIVD 347 (390)
Q Consensus 321 -----~i~~~~~g~~~~~~~~~l~~~i~~l~~ 347 (390)
++.+...|.++-.-.+...-++..+++
T Consensus 137 FRhhS~is~~a~GvI~G~G~~gY~lAl~al~~ 168 (172)
T 3n8k_A 137 FRRHSYLSPIATGVIVGLGIQGYLLALRYLAE 168 (172)
T ss_dssp GGGCCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred ccccccccccceEEEEeCChHHHHHHHHHHHH
Confidence 333333565553356666666665543
No 106
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=61.55 E-value=29 Score=24.62 Aligned_cols=108 Identities=9% Similarity=-0.001 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--------cceEEeCCCC-CCCCccHH
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--------CHCIIYTPSN-EHFGIVPI 301 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--------adv~v~ps~~-e~~~~~~~ 301 (390)
.++.++.+.+ .....+....++.+....|.... +..+....+.. .|++++-... +.-|..++
T Consensus 8 ~~ILivdd~~-------~~~~~l~~~L~~~g~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~ 78 (143)
T 2qvg_A 8 VDILYLEDDE-------VDIQSVERVFHKISSLIKIEIAK--SGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFL 78 (143)
T ss_dssp CSEEEECCCH-------HHHHHHHHHHHHHCTTCCEEEES--SHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHH
T ss_pred CeEEEEeCCH-------HHHHHHHHHHHHhCCCceEEEEC--CHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHH
Confidence 5677777543 23356677777766432454433 44555666653 6777764332 33345555
Q ss_pred hhhh-----cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 302 EAMF-----CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 302 Ea~a-----~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
+.+. ..+|+|.. .... ..+.+..|..+++..+ +.+++.+++.....
T Consensus 79 ~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 79 KELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp HHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 5554 46787763 3222 2334456778899999 99999999776544
No 107
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=61.45 E-value=41 Score=23.92 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=65.3
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh-
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF- 305 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a- 305 (390)
..++.++.+.+. ....+.......|. .|. ..-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 8 ~~~iLivd~~~~-------~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 8 WWRIMLVDTQLP-------ALAASISALSQEGF--DII--QCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp CEEEEEECTTGG-------GGHHHHHHHHHHTE--EEE--EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred CceEEEEeCCHH-------HHHHHHHHHHHcCC--eEE--EeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 367788876543 22666666666553 233 23344555555543 677776433 2334555666554
Q ss_pred ----cCCCEEEe-cCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 ----CKRPVIAV-NSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 ----~G~pvi~~-~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|||.- ..... .+.+..|..+++..+ +.+++..+|..++..
T Consensus 77 ~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 77 NPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp STTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 36787763 33222 233456778899999 999999999988753
No 108
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=61.35 E-value=29 Score=25.22 Aligned_cols=97 Identities=13% Similarity=0.208 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc----c-eEEeCCCCCCCCccHHhhhh-cCCCEEE---ecCCCc
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC----H-CIIYTPSNEHFGIVPIEAMF-CKRPVIA---VNSGGP 318 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a----d-v~v~ps~~e~~~~~~~Ea~a-~G~pvi~---~~~~~~ 318 (390)
+..+.+++.+.++|+ .+.+...=...++.+.+.+| | +++.|.-+...+..+.+|++ .++|+|= |+.-.-
T Consensus 29 di~~~l~~~a~~~g~--~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aR 106 (143)
T 1gqo_A 29 DIETDLFQFAEALHI--QLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDAVSSISLPVVEVHLSNLYAR 106 (143)
T ss_dssp HHHHHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGS
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHHHHHHHHhCCCCEEEEEecCcccc
Confidence 444666777777775 46666655666777777665 3 56778777778899999986 5899987 333211
Q ss_pred -----ccceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 319 -----KESVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 319 -----~e~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
..++.+...|.++-.-.+...-++..++
T Consensus 107 E~FRh~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 139 (143)
T 1gqo_A 107 EEFRHQSVIAPVAKGQIVGLGAEGYKLAVRYLL 139 (143)
T ss_dssp CGGGGCCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccccccccceeEEEEecCHHHHHHHHHHHH
Confidence 1223333455555435566666666554
No 109
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=61.29 E-value=23 Score=24.27 Aligned_cols=54 Identities=4% Similarity=-0.035 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCC
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS 292 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~ 292 (390)
-++++|.|-.. . -..+.+++.+++.|++-.|.-.+.-+ +.+....+|++++.+.
T Consensus 6 Ill~Cg~G~sT---S-~l~~k~~~~~~~~gi~~~i~a~~~~~---~~~~~~~~Dvil~~pq 59 (106)
T 1e2b_A 6 IYLFSSAGMST---S-LLVSKMRAQAEKYEVPVIIEAFPETL---AGEKGQNADVVLLGPQ 59 (106)
T ss_dssp EEEECSSSTTT---H-HHHHHHHHHHHHSCCSEEEEEECSSS---TTHHHHHCSEEEECTT
T ss_pred EEEECCCchhH---H-HHHHHHHHHHHHCCCCeEEEEecHHH---HHhhccCCCEEEEccc
Confidence 46677777653 1 34468899999999864444333322 2356789999887653
No 110
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=61.02 E-value=59 Score=25.61 Aligned_cols=148 Identities=9% Similarity=0.084 Sum_probs=91.7
Q ss_pred CCCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC
Q psy12587 192 KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS 271 (390)
Q Consensus 192 ~~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~ 271 (390)
....-++|.|.++....-..+++-+ -+. .+.+.+.|........++ ++....-=.|.|.
T Consensus 179 ~k~~d~iyggsfrsg~re~kmve~l---fdt-------gl~ieffg~~~~~qfknp-----------~~pwt~~pvf~gk 237 (351)
T 1jg7_A 179 KKTLDVIYGGSFRSGQRESKMVEFL---FDT-------GLNIEFFGNAREKQFKNP-----------KYPWTKAPVFTGK 237 (351)
T ss_dssp CCCEEEEEECCCGGGTTHHHHHHHH---SSC-------SSCEEEESSCCGGGCCCT-----------TSCCSSCCEEEEC
T ss_pred cceeeeeeccccccCchHHHHHHHH---Hhc-------CcceeeecchhHHhccCC-----------CCCCcCCCccCCc
Confidence 3556789999988766655555543 333 255667787654211111 2233344578999
Q ss_pred CChHHHHHHHHhcceEEeCCC--C-CCC-CccHHhhhhcCCCEEEec-CCCcccceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 272 PSDAAKISLFKFCHCIIYTPS--N-EHF-GIVPIEAMFCKRPVIAVN-SGGPKESVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 272 ~~~~e~~~~~~~adv~v~ps~--~-e~~-~~~~~Ea~a~G~pvi~~~-~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
++..++.+--+.|-+.+.... + +.+ ...+-|+||.....+.-. ...-..++.+ .-+.++ +-.++.+.+.++-
T Consensus 238 i~~~~~~~~ns~a~a~~i~gdk~y~~n~it~rvwe~~as~av~~~d~~fd~~~~i~~~--a~fyv~-nr~elid~in~~k 314 (351)
T 1jg7_A 238 IPMNMVSEKNSQAIAALIIGDKNYNDNFITLRVWETMASDAVMLIDEEFDTKHRIIND--ARFYVN-NRAELIDRVNELK 314 (351)
T ss_dssp CCGGGHHHHHTTEEEEEECCCGGGTTTCCCHHHHHHHTSSSEEEEEGGGCTTCCSCSC--GGGEEC-SHHHHHHHHHHHH
T ss_pred CCHHHHhhccccceEEEEeccccccCCeecHHHHHHHhhhhHhhhhcccCcccccccC--ceeEec-CHHHHHHHHhhcc
Confidence 999887776666655444322 2 222 345889999875544432 2333334433 347777 8999999999999
Q ss_pred cCChhHHHHHHHHHHHHH
Q psy12587 347 DNDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~ 364 (390)
.+.. .|.++-+-.....
T Consensus 315 ~~~~-~r~e~l~~qh~il 331 (351)
T 1jg7_A 315 HSDV-LRKEMLSIQHDIL 331 (351)
T ss_dssp HCHH-HHHHHHHHHHHHH
T ss_pred chHH-HHHHHHHHHHHHH
Confidence 8888 8888876655554
No 111
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=60.36 E-value=45 Score=24.00 Aligned_cols=110 Identities=9% Similarity=0.171 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe-cCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL-TSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~-g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a- 305 (390)
.++.++.+.+ .....+....++. ...... ..-+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 6 ~~ILivdd~~-------~~~~~l~~~L~~~---~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~ 75 (153)
T 3cz5_A 6 ARIMLVDDHP-------IVREGYRRLIERR---PGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQ 75 (153)
T ss_dssp EEEEEECSCH-------HHHHHHHHHHTTS---TTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred cEEEEECCcH-------HHHHHHHHHHhhC---CCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 6777777543 2234455555441 123333 23344555555554 5777764332 333444555443
Q ss_pred --cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 --CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 --~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..+|+|.. .... ..+.+..|..+++..+ +.+++..+|..++....
T Consensus 76 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 76 WDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp HCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred hCCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 46787773 3222 2334456778899999 99999999999987544
No 112
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=59.01 E-value=42 Score=23.23 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh---cceEEeCCCC-C-CCCccHHhhhh
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF---CHCIIYTPSN-E-HFGIVPIEAMF 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~---adv~v~ps~~-e-~~~~~~~Ea~a 305 (390)
.++.++.+.+ .....+.......|. .+. ..-+..+....+.. .|++++-... + .-|..+++.+.
T Consensus 6 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~ 74 (132)
T 2rdm_A 6 VTILLADDEA-------ILLLDFESTLTDAGF--LVT--AVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAR 74 (132)
T ss_dssp CEEEEECSSH-------HHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHH
T ss_pred ceEEEEcCcH-------HHHHHHHHHHHHcCC--EEE--EECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHH
Confidence 5677777543 233566666666554 233 23445555566654 5777764332 2 33445555443
Q ss_pred ---cCCCEEEecCCCcccceecC--cceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 ---CKRPVIAVNSGGPKESVVDG--RTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 ---~G~pvi~~~~~~~~e~i~~~--~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..+|+|........+....+ ..+++..+ +.+++..+|.+++....
T Consensus 75 ~~~~~~~ii~~s~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 75 EIDPNMPIVYISGHAALEWASNGVPDSIILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp HHCTTCCEEEEESSCCTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred hcCCCCCEEEEeCCccHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcCC
Confidence 36787764322222221111 12588888 99999999999887554
No 113
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=58.59 E-value=22 Score=29.66 Aligned_cols=100 Identities=9% Similarity=0.046 Sum_probs=57.9
Q ss_pred CcEEEecC-CChH--HHHHHHHhcceEEeC-CCCCCCCc-cHHhhhhcCCCEEEecCCCcccce-ecCcceeeecCCHHH
Q psy12587 264 DNVLFLTS-PSDA--AKISLFKFCHCIIYT-PSNEHFGI-VPIEAMFCKRPVIAVNSGGPKESV-VDGRTGFLCESNEEA 337 (390)
Q Consensus 264 ~~v~~~g~-~~~~--e~~~~~~~adv~v~p-s~~e~~~~-~~~Ea~a~G~pvi~~~~~~~~e~i-~~~~~g~~~~~~~~~ 337 (390)
++|.|.|. +|.. +....+..||++|+- +....+|. .+.++...|.|+|.-+......+- .+...-+....+.++
T Consensus 175 P~IV~FGE~lp~~~~~~~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~ 254 (285)
T 3glr_A 175 PDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVH 254 (285)
T ss_dssp EEECCTTSBCCGGGGGHHHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHH
T ss_pred CcEEEeCCcCCHHHHHHHHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHH
Confidence 56777776 5542 224567899987664 33333333 345666678898887655443221 112223333337788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHH
Q psy12587 338 FAKAMKKIVDNDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 338 l~~~i~~l~~~~~~~~~~~~~~~~~~~ 364 (390)
....+.+.+.-.+ +.+.+-+...+.+
T Consensus 255 ~~~~L~~~lgw~~-el~~~~~~~~~~~ 280 (285)
T 3glr_A 255 GVESLVELLGWTE-EMRDLVQRETGKL 280 (285)
T ss_dssp HHHHHHHHHTCHH-HHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCHH-HHHHHHHhhHhhh
Confidence 8888887776555 6777666555443
No 114
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=57.82 E-value=46 Score=23.39 Aligned_cols=106 Identities=12% Similarity=0.097 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.|+.+.+ .....+....++. -.|. ..-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 4 ~~iLivdd~~-------~~~~~l~~~l~~~---~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 71 (140)
T 3n53_A 4 KKILIIDQQD-------FSRIELKNFLDSE---YLVI--ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRS 71 (140)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHTTT---SEEE--EESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTS
T ss_pred CEEEEEeCCH-------HHHHHHHHHHHhc---ceEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcC
Confidence 4677776543 2224455555443 2233 23345555555543 577776533 3344556665554
Q ss_pred ---cCCCEEEe-cC---CCcccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 ---CKRPVIAV-NS---GGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 ---~G~pvi~~-~~---~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
.++|+|.. .. ....+.+..|..+++..+ +.+++..+|..++..
T Consensus 72 ~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 72 KGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp TTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 56788763 32 233445566778899999 999999999988753
No 115
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=57.50 E-value=4.6 Score=33.50 Aligned_cols=43 Identities=9% Similarity=-0.117 Sum_probs=29.5
Q ss_pred HHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCc
Q psy12587 276 AKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGP 318 (390)
Q Consensus 276 e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~ 318 (390)
++.+++..+|+++-.+..+..--.+..++..|+|+|....|-.
T Consensus 66 dl~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s 108 (272)
T 4f3y_A 66 DIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFS 108 (272)
T ss_dssp CHHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCC
T ss_pred CHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 3456788999998766433322335568889999999776543
No 116
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=57.38 E-value=43 Score=22.83 Aligned_cols=106 Identities=14% Similarity=0.210 Sum_probs=60.3
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh---
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF--- 305 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a--- 305 (390)
++.++.+.+ .....+....+..|. .+. ..-+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 3 ~ilivdd~~-------~~~~~l~~~L~~~~~--~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 71 (124)
T 1mb3_A 3 KVLIVEDNE-------LNMKLFHDLLEAQGY--ETL--QTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDD 71 (124)
T ss_dssp EEEEECSCH-------HHHHHHHHHHHHTTC--EEE--EESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHST
T ss_pred EEEEEcCCH-------HHHHHHHHHHHHcCc--EEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCc
Confidence 455565432 333556666666553 233 22344454455443 5777764332 333455555553
Q ss_pred --cCCCEEEecC-C---CcccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 --CKRPVIAVNS-G---GPKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 --~G~pvi~~~~-~---~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|.... . ...+.+..|..+++..+ +.+++..++..++..
T Consensus 72 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 72 DLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp TTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred cccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 3578876432 2 12233455777899999 999999999988754
No 117
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=57.32 E-value=29 Score=25.56 Aligned_cols=95 Identities=17% Similarity=0.308 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc----c-eEEeCCCCCCCCccHHhhhh-cCCCEEEecCCC--ccc-
Q psy12587 250 YKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC----H-CIIYTPSNEHFGIVPIEAMF-CKRPVIAVNSGG--PKE- 320 (390)
Q Consensus 250 ~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a----d-v~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~~~--~~e- 320 (390)
.+.+++.+.++|+ .+.+...=...++.+.+.+| | +++.|.-+...+..+.+|++ .++|+|=--... .+|
T Consensus 38 ~~~l~~~a~~~g~--~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~~~~P~VEVHiSNi~aRE~ 115 (153)
T 3lwz_A 38 VSQLEIQAQGMDV--ALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVALRDALLGVQIPFIEIHLSNVHAREP 115 (153)
T ss_dssp HHHHHHHHHHTTE--EEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHHHTCCEEEEESSCGGGSCG
T ss_pred HHHHHHHHHHcCC--EEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHHHHHHHHhcCCCEEEEEcCCccccch
Confidence 3556666666664 35555544556666666654 4 56778777778889999884 689998733221 122
Q ss_pred -----ceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 321 -----SVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 321 -----~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
++.+...|.++-.-.+...-++..++
T Consensus 116 FRh~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 146 (153)
T 3lwz_A 116 FRHHSYLSDIAVGVICGLGADGYNFALQAAV 146 (153)
T ss_dssp GGGCCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred hhhcccccccceEEEEecChhHHHHHHHHHH
Confidence 23333355554335566666665543
No 118
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=56.12 E-value=16 Score=25.88 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhhc-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMFC- 306 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a~- 306 (390)
.++.++.+.+ .....+.......|. .|.. .-+..+....+.. .|++++-.. .+.-|..+++.+..
T Consensus 5 ~~Ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~ 73 (136)
T 2qzj_A 5 TKILIIDGDK-------DNCQKLKGFLEEKGI--SIDL--AYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNV 73 (136)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHTTTC--EEEE--ESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTT
T ss_pred CeEEEEcCCH-------HHHHHHHHHHHHCCC--EEEE--ECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccC
Confidence 6777877653 233556666665543 2332 2344555555554 577776433 22234555555432
Q ss_pred -CCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 307 -KRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 307 -G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
.+|+|.- .... ..+.+..|..+++..+ +.+++..++..++.
T Consensus 74 ~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 74 TTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 6787764 3222 2334556778999999 99999999988764
No 119
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=55.92 E-value=44 Score=22.95 Aligned_cols=106 Identities=15% Similarity=0.248 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhhc-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMFC- 306 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a~- 306 (390)
.++.++.+.+ .....+....+..|.. .+... -+..+....+.. .|++++-... +.-|..+++.+..
T Consensus 5 ~~ilivdd~~-------~~~~~l~~~l~~~~~~-~v~~~--~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~ 74 (128)
T 1jbe_A 5 LKFLVVDDFS-------TMRRIVRNLLKELGFN-NVEEA--EDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAX 74 (128)
T ss_dssp CCEEEECSCH-------HHHHHHHHHHHHTTCC-CEEEE--SSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC-
T ss_pred cEEEEECCCH-------HHHHHHHHHHHHcCCc-EEEee--CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 5677776543 2335566666665531 23322 233444555543 5777664332 3345556666543
Q ss_pred ----CCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHh
Q psy12587 307 ----KRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIV 346 (390)
Q Consensus 307 ----G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~ 346 (390)
.+|+|.. .... ..+.+..|..+++..+ +.+++..++.+++
T Consensus 75 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 75 XAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp -CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHH
Confidence 5677763 3222 2334456778899999 9999999998875
No 120
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=55.80 E-value=18 Score=25.88 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=40.0
Q ss_pred hcceEEeCCC-CCCCCccHHhhhh---cCCCEEEec-CCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 283 FCHCIIYTPS-NEHFGIVPIEAMF---CKRPVIAVN-SGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 283 ~adv~v~ps~-~e~~~~~~~Ea~a---~G~pvi~~~-~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
..|++++-.. .+.-|..+++.+. ..+|+|.-. ... ..+.+..|..+++..+ +.+++..+|..++...
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 3566665332 2222334444332 357777633 222 2334556778899999 9999999999987643
No 121
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=55.68 E-value=27 Score=25.73 Aligned_cols=97 Identities=14% Similarity=0.243 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcc-----eEEeCCCCCCCCccHHhhhh-cCCCEEEecCCC--cc
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCH-----CIIYTPSNEHFGIVPIEAMF-CKRPVIAVNSGG--PK 319 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad-----v~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~~~--~~ 319 (390)
+..+.+++.+.++|+ .+.+...=...++.+.+..|. +++.|.-+...+..+.+|++ .++|+|=--... .+
T Consensus 30 di~~~l~~~a~~~g~--~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aR 107 (154)
T 1uqr_A 30 DIEQHLQQSAQAQGY--ELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHAR 107 (154)
T ss_dssp HHHHHHHHHHHHTTC--EEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCCEEEEESSCGGGS
T ss_pred HHHHHHHHHHHHCCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCCEEEEEecCcccc
Confidence 444667777777775 466666556667777777663 56778766677888999886 689998733221 12
Q ss_pred c------ceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 320 E------SVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 320 e------~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
| ++.+...|.++-.-.+...-++..++
T Consensus 108 E~FRh~S~~s~~a~GvI~G~G~~gY~lAl~a~~ 140 (154)
T 1uqr_A 108 EPFRHHSYLSDVAKGVICGLGAKGYDYALDFAI 140 (154)
T ss_dssp CGGGSCCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccccccCcceeEEEEecCHHHHHHHHHHHH
Confidence 2 33333456555435555555555443
No 122
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=55.20 E-value=46 Score=28.24 Aligned_cols=84 Identities=8% Similarity=0.050 Sum_probs=51.3
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhcCCCEEEecCCCcccc-ee----c--CcceeeecC-CHHHHHHHHHHHhc-
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKES-VV----D--GRTGFLCES-NEEAFAKAMKKIVD- 347 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~-i~----~--~~~g~~~~~-~~~~l~~~i~~l~~- 347 (390)
..-+++||+++.-.. .|+|--.++++.. +.++|....+ +.-+ .. + .+.-++.++ +...+++.|.+.|.
T Consensus 89 ~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~g-i~~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~~L~~ 166 (321)
T 1xvl_A 89 IVKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTEG-IEPIPIADGPYTDKPNPHAWMSPRNALVYVENIRQAFVE 166 (321)
T ss_dssp HHHHHTCSEEEECCTTSSTTHHHHHHTSS-SCCEEETTTT-CCCCBCCSSSSTTSBCCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEECCCChHHHHHHHHHhcC-CCcEEEccCC-cccccccccCCCCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 578999999988654 6777667777766 6666653322 2111 00 1 123345566 67777777776654
Q ss_pred -CChhHHHHHHHHHHHHH
Q psy12587 348 -NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 348 -~~~~~~~~~~~~~~~~~ 364 (390)
||+ ......+|+..+.
T Consensus 167 ~DP~-~a~~Y~~Na~~~~ 183 (321)
T 1xvl_A 167 LDPD-NAKYYNANAAVYS 183 (321)
T ss_dssp HCGG-GHHHHHHHHHHHH
T ss_pred HCcc-cHHHHHHHHHHHH
Confidence 676 6666666666655
No 123
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=54.90 E-value=57 Score=28.07 Aligned_cols=59 Identities=8% Similarity=-0.022 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+..+..+++++++..+.... +. .+++. ..|+++..+......-.+.+|+..|++|++-.
T Consensus 42 ~~~~~~a~~~~~~~~~~~~~--~~---~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 42 EKAKAFATANNYPESTKIHG--SY---ESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp HHHHHHHHHTTCCTTCEEES--SH---HHHHHCTTCCEEEECCCGGGHHHHHHHHHTTTCEEEECS
T ss_pred HHHHHHHHHhCCCCCCeeeC--CH---HHHhcCCCCCEEEEcCChHHHHHHHHHHHHCCCeEEEec
Confidence 56677788877533233322 22 35666 58888776543322334667889999998843
No 124
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=54.45 E-value=53 Score=23.03 Aligned_cols=107 Identities=12% Similarity=0.185 Sum_probs=64.6
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.|+.+.. .....+.....+.|. .|... -+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 7 ~~iLivdd~~-------~~~~~l~~~l~~~g~--~v~~~--~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 7 PRILICEDDP-------DIARLLNLMLEKGGF--DSDMV--HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp SEEEEECSCH-------HHHHHHHHHHHHTTC--EEEEE--CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred CCEEEEcCCH-------HHHHHHHHHHHHCCC--eEEEE--CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 5677776543 333566667766654 23332 344555555554 467776433 2334555665544
Q ss_pred ---cCCCEEEecCCC----cc-cceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 ---CKRPVIAVNSGG----PK-ESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 ---~G~pvi~~~~~~----~~-e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|.-.... .. +.+..|..+++..+ +.+++..+|.++++.
T Consensus 76 ~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 76 SRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp GGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 367887743321 12 44556778899999 999999999998754
No 125
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=54.26 E-value=36 Score=28.84 Aligned_cols=95 Identities=16% Similarity=0.019 Sum_probs=44.3
Q ss_pred eEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCCh
Q psy12587 195 IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSD 274 (390)
Q Consensus 195 ~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~ 274 (390)
..|+|+|.- +..+.+++.|.+...+ +..++.-......+........+++.+.++|++ |.-...+.+
T Consensus 5 mrIvf~Gtp------~fa~~~L~~L~~~~~~-----v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIp--v~~~~~~~~ 71 (317)
T 3rfo_A 5 IKVVFMGTP------DFSVPVLRRLIEDGYD-----VIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIP--VLQPLRIRE 71 (317)
T ss_dssp SEEEEECCS------TTHHHHHHHHHHTTCE-----EEEEECCCCCEETTTTEECCCHHHHHHHHTTCC--EECCSCTTS
T ss_pred eEEEEEeCC------HHHHHHHHHHHHCCCc-----EEEEEeCCCcccCCCcccCCCHHHHHHHHcCCC--EEccccCCC
Confidence 467888862 3445556655554332 544443211110000000114577788888875 322233444
Q ss_pred HHHHHHHH--hcceEEeCCCCCCCCccHHh
Q psy12587 275 AAKISLFK--FCHCIIYTPSNEHFGIVPIE 302 (390)
Q Consensus 275 ~e~~~~~~--~adv~v~ps~~e~~~~~~~E 302 (390)
.+..+.++ +.|++++.+...-.|-.+++
T Consensus 72 ~~~~~~l~~~~~Dliv~~~y~~ilp~~~l~ 101 (317)
T 3rfo_A 72 KDEYEKVLALEPDLIVTAAFGQIVPNEILE 101 (317)
T ss_dssp HHHHHHHHHHCCSEEEESSCCSCCCHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCchhhCCHHHHh
Confidence 44444453 46677766543333333333
No 126
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=53.59 E-value=66 Score=27.22 Aligned_cols=67 Identities=15% Similarity=0.037 Sum_probs=41.2
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
++++-+-+... +..++.+++++.+. .+-+. .+++. ..|+++..+....-.-.+.+|+..|+
T Consensus 30 ~~l~av~d~~~---------~~~~~~~~~~~~~~-----~~~~~---~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk 92 (330)
T 3e9m_A 30 AEVRGIASRRL---------ENAQKMAKELAIPV-----AYGSY---EELCKDETIDIIYIPTYNQGHYSAAKLALSQGK 92 (330)
T ss_dssp EEEEEEBCSSS---------HHHHHHHHHTTCCC-----CBSSH---HHHHHCTTCSEEEECCCGGGHHHHHHHHHHTTC
T ss_pred cEEEEEEeCCH---------HHHHHHHHHcCCCc-----eeCCH---HHHhcCCCCCEEEEcCCCHHHHHHHHHHHHCCC
Confidence 77764444333 67777888876531 11223 35676 78887775543322234678999999
Q ss_pred CEEEec
Q psy12587 309 PVIAVN 314 (390)
Q Consensus 309 pvi~~~ 314 (390)
+|++-.
T Consensus 93 ~vl~EK 98 (330)
T 3e9m_A 93 PVLLEK 98 (330)
T ss_dssp CEEECS
T ss_pred eEEEeC
Confidence 999844
No 127
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=52.42 E-value=60 Score=26.98 Aligned_cols=84 Identities=8% Similarity=-0.107 Sum_probs=47.4
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhc-CCCEEEecCCCccccee-----------------cCcceeeecC-CHHH
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFC-KRPVIAVNSGGPKESVV-----------------DGRTGFLCES-NEEA 337 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~-G~pvi~~~~~~~~e~i~-----------------~~~~g~~~~~-~~~~ 337 (390)
..-+++||+++.-.. .|+|--.++++... ++.+|.. ..+.. +.. ..+.-++.++ +...
T Consensus 55 ~~~l~~Adlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~-~~~i~-l~~~~~~~~~~~~~~~~h~~~~dPHvWldp~~~~~ 132 (286)
T 3gi1_A 55 VAAIYDADLFVYHSHTLEAWARDLDPNLKKSKVDVFEA-SKPLT-LDRVKGLEDMEVTQGIDPATLYDPHTWTDPVLAGE 132 (286)
T ss_dssp HHHHHTSSEEEESCTTTSGGGTTCCTTTTTCCCEEEET-TTTSC-CCBCC---------------CBCCCGGGSHHHHHH
T ss_pred HHHHHhCCEEEEcCCCchHHHHHHHHhccCCCcEEEEC-CCCcc-ccccCCcccccccccccCCCCCCCceecCHHHHHH
Confidence 588999999988653 67665566666543 3334432 12221 100 0022344555 6667
Q ss_pred HHHHHHHHhc--CChhHHHHHHHHHHHHH
Q psy12587 338 FAKAMKKIVD--NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 338 l~~~i~~l~~--~~~~~~~~~~~~~~~~~ 364 (390)
+++.|.+.|. +|+ ......+|+.++.
T Consensus 133 ~a~~I~~~L~~~dP~-~a~~y~~N~~~~~ 160 (286)
T 3gi1_A 133 EAVNIAKELGRLDPK-HKDSYTKNAKAFK 160 (286)
T ss_dssp HHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHChh-hHHHHHHHHHHHH
Confidence 7777766554 666 5666666666554
No 128
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=51.15 E-value=30 Score=25.57 Aligned_cols=97 Identities=14% Similarity=0.194 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc----c-eEEeCCCCCCCCccHHhhhh-cC-CCEEEecCCCc--
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC----H-CIIYTPSNEHFGIVPIEAMF-CK-RPVIAVNSGGP-- 318 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a----d-v~v~ps~~e~~~~~~~Ea~a-~G-~pvi~~~~~~~-- 318 (390)
+..+.+++.+.++|+ .+.+...=...++.+.+..| | +++.|.-+...+..+.+|++ .+ +|+|=--....
T Consensus 35 di~~~l~~~a~~~g~--~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~~P~VEVHiSNi~a 112 (156)
T 1gtz_A 35 DVEALCVKAAAAHGG--TVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSVAILDALNTCDGLPVVEVHISNIHQ 112 (156)
T ss_dssp HHHHHHHHHHHTTTC--CEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCHHHHHHHHTSTTCCEEEEESSCGGG
T ss_pred HHHHHHHHHHHHcCC--EEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhcCCCCEEEEEecCccc
Confidence 344556666666665 36666555556666666554 4 56777767677888999887 46 89887332211
Q ss_pred cc------ceecCcceeeecCCHHHHHHHHHHHh
Q psy12587 319 KE------SVVDGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 319 ~e------~i~~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
+| ++.+...|.++-.-.+...-++..++
T Consensus 113 RE~FRh~S~~s~~a~GvI~G~G~~gY~lAl~a~~ 146 (156)
T 1gtz_A 113 REPFRHHSYVSQRADGVVAGCGVQGYVFGVERIA 146 (156)
T ss_dssp SCGGGSCCSGGGTCSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccccCcceeEEEEecCHHHHHHHHHHHH
Confidence 22 33334456665445556655555543
No 129
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=49.90 E-value=14 Score=27.90 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=25.3
Q ss_pred HHHHHhcceEEeCCCCCCCCccHHh---hhhcCCCEEEec
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIVPIE---AMFCKRPVIAVN 314 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~~~E---a~a~G~pvi~~~ 314 (390)
...+..||++|.--. +.-..+.+| |.+.|+||++-.
T Consensus 72 ~~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l~ 110 (165)
T 2khz_A 72 LNWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLF 110 (165)
T ss_dssp HHHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEEE
T ss_pred HHHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEE
Confidence 478999998876332 333445555 778999999953
No 130
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=49.42 E-value=65 Score=22.58 Aligned_cols=105 Identities=12% Similarity=0.142 Sum_probs=60.6
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh---
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF--- 305 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a--- 305 (390)
++.++.+.+. ....+.......|. .|. ..-+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 6 ~ILivdd~~~-------~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~ 74 (137)
T 3cfy_A 6 RVLLVEDSTS-------LAILYKQYVKDEPY--DIF--HVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQND 74 (137)
T ss_dssp EEEEECSCTT-------HHHHHHHHTTTSSS--EEE--EESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTT
T ss_pred eEEEEeCCHH-------HHHHHHHHHHhcCc--eEE--EeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 5677776543 22455555554443 233 23344555555543 6887775432 333455555443
Q ss_pred cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 ~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+|+|.. .... ..+.+..|..+++..+ +.+++...|..++.
T Consensus 75 ~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 75 IPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 46777663 3222 2334456778899999 99999999988764
No 131
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=49.39 E-value=5.5 Score=33.28 Aligned_cols=43 Identities=14% Similarity=-0.110 Sum_probs=28.2
Q ss_pred HHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEecCCCc
Q psy12587 276 AKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGP 318 (390)
Q Consensus 276 e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~ 318 (390)
++.+++..+|++|--+..+..--.+..++..|+|+|...+|-.
T Consensus 81 dl~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~ 123 (288)
T 3ijp_A 81 DPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFS 123 (288)
T ss_dssp CHHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCC
T ss_pred CHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 3456778999998655433222234567889999999766543
No 132
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=48.37 E-value=66 Score=22.34 Aligned_cols=109 Identities=14% Similarity=0.193 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec-CCChHHHHHHHH--hcceEEeCCCC-CCCCccHHhhhh-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT-SPSDAAKISLFK--FCHCIIYTPSN-EHFGIVPIEAMF- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g-~~~~~e~~~~~~--~adv~v~ps~~-e~~~~~~~Ea~a- 305 (390)
.+++++.+.+ .....+....+..+ .+.... .-+..+....+. ..|++++-... +.-|..+++.+.
T Consensus 4 ~~Ilivdd~~-------~~~~~l~~~l~~~~---~~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~ 73 (133)
T 3b2n_A 4 TSLIIAEDQN-------MLRQAMVQLIKLHG---DFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRK 73 (133)
T ss_dssp EEEEEECSCH-------HHHHHHHHHHHHHS---SEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred eEEEEECCCH-------HHHHHHHHHHhhCC---CcEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 4566666542 23345555555543 122222 233444455554 36787775433 223445555543
Q ss_pred --cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 306 --CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 306 --~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
..+|+|.- .... ..+.+..|..+++..+ +.+++..+|..++...
T Consensus 74 ~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 74 KHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred HCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 35777763 3322 2334456778999999 9999999999887543
No 133
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=48.02 E-value=61 Score=22.57 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=64.2
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.++.+.+ .....+....++.+. .+... -+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 8 ~~ilivdd~~-------~~~~~l~~~L~~~~~--~v~~~--~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 76 (137)
T 3hdg_A 8 LKILIVEDDT-------DAREWLSTIISNHFP--EVWSA--GDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAG 76 (137)
T ss_dssp CCEEEECSCH-------HHHHHHHHHHHTTCS--CEEEE--SSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHT
T ss_pred cEEEEEeCCH-------HHHHHHHHHHHhcCc--EEEEE--CCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 6778887653 233556666666432 34333 344554555543 677777543 3334555555443
Q ss_pred -cCCCEEEecCCC----cccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 -CKRPVIAVNSGG----PKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 -~G~pvi~~~~~~----~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|...... ..+.+..|..+++..+ +.+++.++|.++++.
T Consensus 77 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 77 GAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp TCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 467787743322 2334556778899999 999999999998753
No 134
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=47.69 E-value=72 Score=22.59 Aligned_cols=107 Identities=13% Similarity=0.177 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.|+.+.+ .....+....++.|. .+.. .-+..+..+.+.. .|++++-.. .+.-|..+++.+.
T Consensus 15 ~~iLivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~ 83 (143)
T 3m6m_D 15 MRMLVADDHE-------ANRMVLQRLLEKAGH--KVLC--VNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVM 83 (143)
T ss_dssp CEEEEECSSH-------HHHHHHHHHHHC--C--EEEE--ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred ceEEEEeCCH-------HHHHHHHHHHHHcCC--eEEE--eCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 6788887643 233556666666553 2333 3344555566654 577776433 2334556666553
Q ss_pred -----cCCCEEEecCCCc----ccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 -----CKRPVIAVNSGGP----KESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 -----~G~pvi~~~~~~~----~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|....... .+....|..+++..+ +.+++.+++.++...
T Consensus 84 ~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 84 QASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp HHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred hhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 2367777443222 233456778899999 999999999988654
No 135
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=47.64 E-value=60 Score=25.13 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEE
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCII 288 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v 288 (390)
...+++++...++... ++-++|..+.. ..+....+-+++ .+....+.+.+|+...+.
T Consensus 80 ~~Dil~al~~a~~~~~-------kIavvg~~~~~--------~~~~~~~~ll~~--~i~~~~~~~~~e~~~~i~------ 136 (196)
T 2q5c_A 80 RFDTMRAVYNAKRFGN-------ELALIAYKHSI--------VDKHEIEAMLGV--KIKEFLFSSEDEITTLIS------ 136 (196)
T ss_dssp HHHHHHHHHHHGGGCS-------EEEEEEESSCS--------SCHHHHHHHHTC--EEEEEEECSGGGHHHHHH------
T ss_pred HhHHHHHHHHHHhhCC-------cEEEEeCcchh--------hHHHHHHHHhCC--ceEEEEeCCHHHHHHHHH------
Confidence 4667888888877533 56666654433 344444444554 466666666666544433
Q ss_pred eCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhc
Q psy12587 289 YTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD 347 (390)
Q Consensus 289 ~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~ 347 (390)
++..-|+-+|..+.....-.-+.|-+++++..+.+++.+++.+++.
T Consensus 137 -------------~l~~~G~~vvVG~~~~~~~A~~~Gl~~vli~sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 137 -------------KVKTENIKIVVSGKTVTDEAIKQGLYGETINSGEESLRRAIEEALN 182 (196)
T ss_dssp -------------HHHHTTCCEEEECHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHH
T ss_pred -------------HHHHCCCeEEECCHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHH
Confidence 4445555555544322211112344566666468888888887653
No 136
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=47.05 E-value=81 Score=25.15 Aligned_cols=106 Identities=12% Similarity=0.155 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.|+.+.+ .....+....+..|. .|. ..-+..+..+.+. ..|++++-.. .+.-|..+++.+.
T Consensus 24 ~~ILivdd~~-------~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~ 92 (250)
T 3r0j_A 24 ARVLVVDDEA-------NIVELLSVSLKFQGF--EVY--TATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRAD 92 (250)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred ceEEEEECCH-------HHHHHHHHHHHHCCC--EEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 5566665432 222445555554442 222 2223344444443 2566665432 2333445554443
Q ss_pred -cCCCEEEec-CCCc---ccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 -CKRPVIAVN-SGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 -~G~pvi~~~-~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+|||.-. .... .+.+..|..+++..+ +.+++..+|..++.
T Consensus 93 ~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 93 GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp TCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 357777633 2222 234556778999999 99999999988864
No 137
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=46.87 E-value=98 Score=26.09 Aligned_cols=84 Identities=13% Similarity=-0.023 Sum_probs=50.6
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhcCCC-EEEecCCCcc--ccee----cCcceeeecC-CHHHHHHHHHHHhc-
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRP-VIAVNSGGPK--ESVV----DGRTGFLCES-NEEAFAKAMKKIVD- 347 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~p-vi~~~~~~~~--e~i~----~~~~g~~~~~-~~~~l~~~i~~l~~- 347 (390)
..-+++||+++.-.. .|+|--.++++.. +.+ +|.... +.. .... ..+.-++.++ +...+++.|.+.|.
T Consensus 82 ~~~l~~ADlvv~~G~~lE~w~~~~~~~~~-~~~~~v~~s~-~i~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~~L~~ 159 (313)
T 1toa_A 82 VEWLGNADLILYNGLHLETKMGEVFSKLR-GSRLVVAVSE-TIPVSQRLSLEEAEFDPHVWFDVKLWSYSVKAVYESLCK 159 (313)
T ss_dssp HHHHHHCSEEEECCTTCSTTCHHHHHHHT-TSSEEEEGGG-GSCGGGSCBSTTSCBCCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEcCCCcHHHHHHHHHhcc-CCCeEEEeec-CcccccccccCCCCCCCceeCCHHHHHHHHHHHHHHHHH
Confidence 577899999998654 6777778888766 344 443221 121 1111 1123355566 67777777776654
Q ss_pred -CChhHHHHHHHHHHHHH
Q psy12587 348 -NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 348 -~~~~~~~~~~~~~~~~~ 364 (390)
+|+ ......+|+..+.
T Consensus 160 ~DP~-~a~~Y~~N~~~~~ 176 (313)
T 1toa_A 160 LLPG-KTREFTQRYQAYQ 176 (313)
T ss_dssp HCGG-GHHHHHHHHHHHH
T ss_pred HChh-hHHHHHHHHHHHH
Confidence 676 6666666666655
No 138
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=46.62 E-value=18 Score=31.46 Aligned_cols=99 Identities=12% Similarity=0.045 Sum_probs=51.8
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
+++.|+.+|--.-.+.+-..+.++..+....+ +++++-+-+.+. +..++.+++++.+ .+ +-
T Consensus 24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~-----~~~lvav~d~~~---------~~a~~~a~~~g~~-~~----y~ 84 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVE-----RPRLVHLAEANA---------GLAEARAGEFGFE-KA----TA 84 (393)
T ss_dssp CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSC-----CCEEEEEECC-----------TTHHHHHHHHTCS-EE----ES
T ss_pred CCccEEEEcCCHHHHHHHHHHHhhhhhhccCC-----CcEEEEEECCCH---------HHHHHHHHHhCCC-ee----cC
Confidence 45666766642111212222223333333333 367765555443 5567778888763 21 12
Q ss_pred ChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhhcCCCEEEe
Q psy12587 273 SDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 273 ~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~ 313 (390)
+.+ ++++. .|+++..+....-.-.+.+|+..|++|++=
T Consensus 85 d~~---ell~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~E 124 (393)
T 4fb5_A 85 DWR---ALIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCE 124 (393)
T ss_dssp CHH---HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CHH---HHhcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEEc
Confidence 333 56654 677766553322233467899999999984
No 139
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=46.04 E-value=49 Score=23.79 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=64.0
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh-
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF- 305 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a- 305 (390)
..++.|+.+.+ .....+....+..|. .|. ..-+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 7 ~~~iLivdd~~-------~~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 75 (154)
T 2rjn_A 7 NYTVMLVDDEQ-------PILNSLKRLIKRLGC--NII--TFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAK 75 (154)
T ss_dssp CCEEEEECSCH-------HHHHHHHHHHHTTTC--EEE--EESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CCeEEEEcCCH-------HHHHHHHHHHHHcCC--eEE--EeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 46788887653 333566666666553 233 23345555666654 5777764332 333444555442
Q ss_pred --cCCCEEEe-cCCC---cccceecC-cceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 --CKRPVIAV-NSGG---PKESVVDG-RTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 --~G~pvi~~-~~~~---~~e~i~~~-~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|.- .... ..+.+..| ..+++..+ +.+++..+|..++..
T Consensus 76 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 76 SYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp HCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 46787763 3222 22333445 67889989 999999999988754
No 140
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=45.36 E-value=1.1e+02 Score=24.06 Aligned_cols=107 Identities=6% Similarity=0.125 Sum_probs=61.5
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCCC-CCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPSN-EHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~~-e~~~~~~~Ea~a-- 305 (390)
.++.|+.+.+ .....+....+..|. .|.... +..+....+. ..|++++-... +.-|..+++.+.
T Consensus 6 ~~ILivdd~~-------~~~~~l~~~L~~~g~--~v~~~~--~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~ 74 (238)
T 2gwr_A 6 QRILVVDDDA-------SLAEMLTIVLRGEGF--DTAVIG--DGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRAD 74 (238)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEEEEC--CGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTT
T ss_pred CeEEEEeCCH-------HHHHHHHHHHHHCCC--EEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 4566666543 233556666666554 243332 3333344444 35777764332 333445555443
Q ss_pred cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 ~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
.++|+|.- .... ..+.+..|..+++..+ +++++..+|..++..
T Consensus 75 ~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 75 SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 26888763 3222 2334556778999999 999999999988754
No 141
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=45.02 E-value=71 Score=21.79 Aligned_cols=109 Identities=12% Similarity=0.168 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a-- 305 (390)
.++.++.+.+ .....+.......+. .+.. .-+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 4 ~~ilivdd~~-------~~~~~l~~~l~~~~~--~v~~--~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 72 (126)
T 1dbw_A 4 YTVHIVDDEE-------PVRKSLAFMLTMNGF--AVKM--HQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDL 72 (126)
T ss_dssp CEEEEEESSH-------HHHHHHHHHHHHTTC--EEEE--ESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHT
T ss_pred CEEEEEcCCH-------HHHHHHHHHHHhCCc--EEEE--eCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 4666776543 333556666666553 2332 2344555566554 4676664332 233444555443
Q ss_pred -cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 -CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 -~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..+|+|.. .... ..+.+..|..+++..+ +.+++..++..++....
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 123 (126)
T 1dbw_A 73 KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLV 123 (126)
T ss_dssp TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhhh
Confidence 46788763 3322 2334456778999999 99999999998876543
No 142
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=44.45 E-value=1.1e+02 Score=23.63 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHhcceEEeCCCCCCCCcc--HHhhhh------cCCCEEEecCCCc
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIV--PIEAMF------CKRPVIAVNSGGP 318 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~--~~Ea~a------~G~pvi~~~~~~~ 318 (390)
..++..||++|.-. -|+|+- ++|++. .++||+.-+..++
T Consensus 103 ~~m~~~sda~IalP--GG~GTLdElfe~lt~~qlg~~~kPvvlln~~gf 149 (189)
T 3sbx_A 103 QVMEDRANAFITLP--GGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGH 149 (189)
T ss_dssp HHHHHHCSEEEECS--CCHHHHHHHHHHHHHHHTTSCCCCEEEECTTCT
T ss_pred HHHHHHCCEEEEeC--CCcchHHHHHHHHHHHHhcccCCCEEEecCCcc
Confidence 56778899887532 245542 567764 5899999887544
No 143
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=44.42 E-value=78 Score=22.08 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHH-cCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKK-LKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~-~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a- 305 (390)
.++.++.+.+ .....+....++ .+. ..+... -+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 9 ~~iLivdd~~-------~~~~~l~~~L~~~~~~-~~v~~~--~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 78 (143)
T 3cnb_A 9 FSILIIEDDK-------EFADMLTQFLENLFPY-AKIKIA--YNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKS 78 (143)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHHCTT-CEEEEE--CSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHT
T ss_pred ceEEEEECCH-------HHHHHHHHHHHhccCc-cEEEEE--CCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHh
Confidence 6777777543 233566666666 554 113332 233444555554 5777764432 334455555543
Q ss_pred ----cCCCEEE-ecCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 ----CKRPVIA-VNSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 ----~G~pvi~-~~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..+|+|. +..... .+.+..|..+++..+ +.+++..+|..++....
T Consensus 79 ~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 79 TPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp STTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 3578776 333222 334456778899999 99999999999887554
No 144
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=44.22 E-value=77 Score=21.92 Aligned_cols=106 Identities=8% Similarity=0.087 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhh---
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAM--- 304 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~--- 304 (390)
.++.++.+.+ .....+....+..|. .|.. .-+..+....+.. .|++++-... +.-|..+++.+
T Consensus 4 ~~Ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (132)
T 3crn_A 4 KRILIVDDDT-------AILDSTKQILEFEGY--EVEI--AATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKL 72 (132)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEEE--ESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHH
T ss_pred cEEEEEeCCH-------HHHHHHHHHHHHCCc--eEEE--eCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhh
Confidence 4566666543 233556666666553 2332 2334454555543 5777764332 22344555544
Q ss_pred hcCCCEEE-ecCCC---cccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 305 FCKRPVIA-VNSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 305 a~G~pvi~-~~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..++|+|. |.... ..+.+..|..+++..+ +.+++..+|..++.
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 73 RPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp CTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 24677776 33322 2334456778999999 99999999988764
No 145
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=44.00 E-value=1.2e+02 Score=25.15 Aligned_cols=85 Identities=8% Similarity=-0.004 Sum_probs=49.5
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhc-CCCEEEecCCCcc--cce--e-------c-----CcceeeecC-CHHHH
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFC-KRPVIAVNSGGPK--ESV--V-------D-----GRTGFLCES-NEEAF 338 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~-G~pvi~~~~~~~~--e~i--~-------~-----~~~g~~~~~-~~~~l 338 (390)
..-+++||+++.-.. .|+|--.+++++.. ++++|.... +.. +.- . + .+.-++.++ +...+
T Consensus 53 ~~~l~~Adlvv~~G~~lE~w~~~~~~~~~~~~~~~v~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~ 131 (284)
T 3cx3_A 53 IAAIYDADVFVYHSHTLESWAGSLDPNLKKSKVKVLEASE-GMTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEKAGEE 131 (284)
T ss_dssp HHHHHHSSEEEESCTTTSCTTTTCCTTTTTCCCEEEETTT-TCCCCBCCC-------------CCBCCCGGGSHHHHHHH
T ss_pred HHHHHhCCEEEEcCCCcHhHHHHHHHhcccCCCeEEEccC-CccccccCCcccccccccccCCCCCCCCcccCHHHHHHH
Confidence 578999999998654 67777777777654 344544321 211 000 0 0 122345555 66677
Q ss_pred HHHHHHHhc--CChhHHHHHHHHHHHHH
Q psy12587 339 AKAMKKIVD--NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 339 ~~~i~~l~~--~~~~~~~~~~~~~~~~~ 364 (390)
++.|.+.|. +|+ ......+|+..+.
T Consensus 132 a~~I~~~L~~~dP~-~a~~y~~N~~~~~ 158 (284)
T 3cx3_A 132 AQIIADKLSEVDSE-HKETYQKNAQAFI 158 (284)
T ss_dssp HHHHHHHHHHHSGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 777766654 676 6666666666655
No 146
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=43.85 E-value=1.2e+02 Score=24.06 Aligned_cols=89 Identities=8% Similarity=-0.026 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe-cCCChHHHHHHHHhcceEE
Q psy12587 210 ELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL-TSPSDAAKISLFKFCHCII 288 (390)
Q Consensus 210 ~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~-g~~~~~e~~~~~~~adv~v 288 (390)
......+..|.+.+ ..++++..... +++++++++. .+.+. +..... .+..+|+++
T Consensus 41 ~va~~ka~~Ll~~G-------A~VtVvap~~~---------~~l~~l~~~~----~i~~i~~~~~~~----dL~~adLVI 96 (223)
T 3dfz_A 41 TIATRRIKGFLQEG-------AAITVVAPTVS---------AEINEWEAKG----QLRVKRKKVGEE----DLLNVFFIV 96 (223)
T ss_dssp HHHHHHHHHHGGGC-------CCEEEECSSCC---------HHHHHHHHTT----SCEEECSCCCGG----GSSSCSEEE
T ss_pred HHHHHHHHHHHHCC-------CEEEEECCCCC---------HHHHHHHHcC----CcEEEECCCCHh----HhCCCCEEE
Confidence 44455566666653 55666665432 6788777653 34444 334433 467899888
Q ss_pred eCCCCCCCCccHHhhhhcCCCEEEecCCCcccce
Q psy12587 289 YTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESV 322 (390)
Q Consensus 289 ~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i 322 (390)
..+..+.....+.++...|+||-..|.+...+++
T Consensus 97 aAT~d~~~N~~I~~~ak~gi~VNvvD~p~~~~f~ 130 (223)
T 3dfz_A 97 VATNDQAVNKFVKQHIKNDQLVNMASSFSDGNIQ 130 (223)
T ss_dssp ECCCCTHHHHHHHHHSCTTCEEEC-----CCSEE
T ss_pred ECCCCHHHHHHHHHHHhCCCEEEEeCCcccCeEE
Confidence 7655444444555555589999888876554443
No 147
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=43.65 E-value=80 Score=21.96 Aligned_cols=107 Identities=10% Similarity=0.115 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC--CCCCccHHhhhh-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN--EHFGIVPIEAMF- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~--e~~~~~~~Ea~a- 305 (390)
.++.++.+.+ .....+....++.|. .+.. -.-+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 10 ~~iLivdd~~-------~~~~~l~~~L~~~g~--~v~~-~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~ 79 (140)
T 3cg0_A 10 PGVLIVEDGR-------LAAATLRIQLESLGY--DVLG-VFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAA 79 (140)
T ss_dssp CEEEEECCBH-------HHHHHHHHHHHHHTC--EEEE-EESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHH
T ss_pred ceEEEEECCH-------HHHHHHHHHHHHCCC--eeEE-EECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHh
Confidence 6677777543 233556666666553 2321 02334444455543 5777764333 223444444443
Q ss_pred -cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 -CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 -~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+|+|.- .... ..+.+..|..+++..+ +.+++..+|..++.
T Consensus 80 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 80 GCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp HSCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 57888773 3222 2234456778899989 99999999988864
No 148
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=43.43 E-value=36 Score=24.02 Aligned_cols=109 Identities=11% Similarity=0.133 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhh---
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMF--- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a--- 305 (390)
.++.++.+.+ .....+....++.|. .|.. .-+..+....+.. .|++++-...+.-|..+++.+.
T Consensus 5 ~~iLivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 5 PTVMVVDESR-------ITFLAVKNALEKDGF--NVIW--AKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF 73 (142)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHGGGTC--EEEE--ESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC
T ss_pred CeEEEEeCCH-------HHHHHHHHHHHhCCC--EEEE--ECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC
Confidence 5677777543 333566777776654 2332 3344555566654 5777664421222334444432
Q ss_pred cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 ~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..+|+|.. .... ..+.+..|..+++..+ +.+++..+|..++....
T Consensus 74 ~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 74 PDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp TTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 36888774 3222 2233455777899988 99999999999987654
No 149
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=42.77 E-value=83 Score=21.94 Aligned_cols=109 Identities=12% Similarity=0.151 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.++.+.+ .....+....++.|. .|. ..-+..+..+.+.. .|++++-.. .+.-|..+++.+.
T Consensus 5 ~~iLivdd~~-------~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~ 73 (136)
T 3t6k_A 5 HTLLIVDDDD-------TVAEMLELVLRGAGY--EVR--RAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQH 73 (136)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred CEEEEEeCCH-------HHHHHHHHHHHHCCC--EEE--EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4566666543 233556666666553 233 23344555555544 477776433 2334555555543
Q ss_pred ---cCCCEEEec-CCCc---ccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 ---CKRPVIAVN-SGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 ---~G~pvi~~~-~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..+|+|... .... .+.+..|..+++..+ +.+++..++.+++....
T Consensus 74 ~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 74 PLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp GGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred CCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 367887643 2222 233456778899999 99999999999886543
No 150
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=42.63 E-value=4.5 Score=31.00 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=40.3
Q ss_pred HHHHhcceEEeCCCCCCCCc--cHHhhhhcCCCEEEecCCCc-ccceecC-cceeeecCCHHHHHHHHHHHhcC
Q psy12587 279 SLFKFCHCIIYTPSNEHFGI--VPIEAMFCKRPVIAVNSGGP-KESVVDG-RTGFLCESNEEAFAKAMKKIVDN 348 (390)
Q Consensus 279 ~~~~~adv~v~ps~~e~~~~--~~~Ea~a~G~pvi~~~~~~~-~e~i~~~-~~g~~~~~~~~~l~~~i~~l~~~ 348 (390)
-+...||.+|... .++|. .+.||+..++||++-+.-+. ..++.+. ...+.+.+|++++.+.+.+.+..
T Consensus 103 ~m~~~sda~Ivlp--Gg~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 103 INALSSNVLVAVG--MGPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CCGGGCSEEEEES--CCHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHHhCCEEEEec--CCccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 3455677665422 13444 47889999999999875221 1122221 12333333999999998887643
No 151
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=42.61 E-value=82 Score=21.81 Aligned_cols=109 Identities=11% Similarity=0.100 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh---cceEEeCCC-CCCCCccHHhhhh-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF---CHCIIYTPS-NEHFGIVPIEAMF- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~---adv~v~ps~-~e~~~~~~~Ea~a- 305 (390)
.++.|+.+.+ .....+....++.|. .|.. ..+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 8 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 76 (136)
T 3hdv_A 8 PLVLVVDDNA-------VNREALILYLKSRGI--DAVG--ADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRA 76 (136)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--CEEE--ESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHT
T ss_pred CeEEEECCCH-------HHHHHHHHHHHHcCc--eEEE--eCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHh
Confidence 6777777543 334667777777664 2333 3344554455543 567776433 3344555665553
Q ss_pred ---cCCCEEEecC-CC---cccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 ---CKRPVIAVNS-GG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 ---~G~pvi~~~~-~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..+|+|.... .. ..+.+..|..+++..+ +.+++..+|.++.....
T Consensus 77 ~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 77 SERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp STTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred cCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 3467776432 22 2334456778899999 99999999999887544
No 152
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=41.88 E-value=65 Score=21.35 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=43.0
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
+..+++.|.-.. .+ ++++++++.+|- .+.+.++ +..|++|... ..|.++-.|...|+|
T Consensus 10 G~~~v~TG~l~~-~R------~e~~~~i~~~Gg----~v~~sVs--------kkt~~LV~g~---~~gsK~~kA~~lgI~ 67 (92)
T 1l7b_A 10 GLTFVITGELSR-PR------EEVKALLRRLGA----KVTDSVS--------RKTSYLVVGE---NPGSKLEKARALGVP 67 (92)
T ss_dssp TCEEECSTTTTS-CH------HHHHHHHHHTTC----EEESCCS--------SSCCCBEECS---SSSTTHHHHHCSSSC
T ss_pred CcEEEEecCCCC-CH------HHHHHHHHHcCC----EEeCccc--------CCeeEEEeCC---CCChHHHHHHHcCCc
Confidence 467888887654 22 888889988873 2445554 3456666643 346788889999999
Q ss_pred EEEec
Q psy12587 310 VIAVN 314 (390)
Q Consensus 310 vi~~~ 314 (390)
||.-+
T Consensus 68 Ii~E~ 72 (92)
T 1l7b_A 68 TLTEE 72 (92)
T ss_dssp CEEHH
T ss_pred EEeHH
Confidence 88743
No 153
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=41.80 E-value=93 Score=22.20 Aligned_cols=108 Identities=10% Similarity=0.226 Sum_probs=64.6
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh-
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF- 305 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a- 305 (390)
..+++|+.+.+ .....+....++.|. .|.. .-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 14 ~~~ILivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 82 (153)
T 3hv2_A 14 RPEILLVDSQE-------VILQRLQQLLSPLPY--TLHF--ARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQ 82 (153)
T ss_dssp CCEEEEECSCH-------HHHHHHHHHHTTSSC--EEEE--ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CceEEEECCCH-------HHHHHHHHHhcccCc--EEEE--ECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHh
Confidence 36777877553 233556666666543 2332 3345555566654 467776433 3334555555443
Q ss_pred --cCCCEEEecCCCc----ccceecC-cceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 --CKRPVIAVNSGGP----KESVVDG-RTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 --~G~pvi~~~~~~~----~e~i~~~-~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|....... .+.+..| ..+++..+ +.+++..+|..++..
T Consensus 83 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 83 QYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp HCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred HCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 4678877433222 2334556 57899999 999999999988753
No 154
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=41.62 E-value=95 Score=22.25 Aligned_cols=109 Identities=12% Similarity=0.130 Sum_probs=67.8
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh-
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF- 305 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a- 305 (390)
..++.|+.+.+ .....+....++.|. .|.. .-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 7 ~~~ILivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~ 75 (154)
T 3gt7_A 7 AGEILIVEDSP-------TQAEHLKHILEETGY--QTEH--VRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKG 75 (154)
T ss_dssp CCEEEEECSCH-------HHHHHHHHHHHTTTC--EEEE--ESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCcEEEEeCCH-------HHHHHHHHHHHHCCC--EEEE--eCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 36788887643 334667777776653 2333 3355565666654 577776443 3344555665553
Q ss_pred ----cCCCEEEecC-CC---cccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 306 ----CKRPVIAVNS-GG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 306 ----~G~pvi~~~~-~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
..+|+|.... .. ..+.+..|..+++..+ +.+++..+|..++...
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 76 QPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp STTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHT
T ss_pred CCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4678877432 22 2234456778899999 9999999999988643
No 155
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=41.27 E-value=82 Score=21.45 Aligned_cols=108 Identities=8% Similarity=0.129 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.|+.+.+ .....+....++.|. .|.. .-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 4 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 4 QQALIVEDYQ-------AAAETFKELLEMLGF--QADY--VMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp EEEEEECSCH-------HHHHHHHHHHHHTTE--EEEE--ESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEcCCH-------HHHHHHHHHHHHcCC--CEEE--ECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 5677776543 334667777777653 2333 3345555566654 567666433 3334555555443
Q ss_pred ---cCCCEEEec-CCCc--ccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 306 ---CKRPVIAVN-SGGP--KESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 306 ---~G~pvi~~~-~~~~--~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
..+|+|... .... .+.+..|..+++..+ +.+++.+++.......
T Consensus 73 ~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 73 PMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp CCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred hccCCCCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 457877733 2211 334455667889999 9999999999886544
No 156
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=41.17 E-value=31 Score=27.11 Aligned_cols=65 Identities=17% Similarity=0.087 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCCCcEEEec--CCChHHHHHHHHhcceEEeCCCCCC---------CCc--cHHhhhhcCCCEEEec
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLT--SPSDAAKISLFKFCHCIIYTPSNEH---------FGI--VPIEAMFCKRPVIAVN 314 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g--~~~~~e~~~~~~~adv~v~ps~~e~---------~~~--~~~Ea~a~G~pvi~~~ 314 (390)
.|...+.+..+++|.+ +..+. ..+.++..+.+.+||.+++|. .+. .|+ .+-|+...|+|++.+.
T Consensus 44 ~~~~s~~~a~~~lG~~--v~~~~i~~~~~~~~~~~l~~ad~I~l~G-G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 44 FYVEAGKKALESLGLL--VEELDIATESLGEITTKLRKNDFIYVTG-GNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp HHHHHHHHHHHHTTCE--EEECCTTTSCHHHHHHHHHHSSEEEECC-SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred HHHHHHHHHHHHcCCe--EEEEEecCCChHHHHHHHHhCCEEEECC-CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 5778888888898863 44431 124566668899999999986 222 122 4567788899999865
Q ss_pred C
Q psy12587 315 S 315 (390)
Q Consensus 315 ~ 315 (390)
.
T Consensus 121 A 121 (206)
T 3l4e_A 121 A 121 (206)
T ss_dssp H
T ss_pred H
Confidence 4
No 157
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=40.83 E-value=19 Score=25.16 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
+..|+|.|.-.. .+ ++++++++.+|- .+.+.++ +..|++|.....+..+.++-.|...|+|
T Consensus 13 G~~~ViTG~l~~-~R------~e~k~~ie~~Gg----kv~~sVs--------kkT~~lV~g~~~e~~gsKl~kA~~lgI~ 73 (113)
T 2cok_A 13 NMKILTLGKLSR-NK------DEVKAMIEKLGG----KLTGTAN--------KASLCISTKKEVEKMNKKMEEVKEANIR 73 (113)
T ss_dssp SCEEEECSCCSS-CH------HHHHHHHHHTTC----EEESCST--------TCSEEECCHHHHHHCCHHHHHHHHTTCC
T ss_pred CCEEEEEecCCC-CH------HHHHHHHHHCCC----EEcCccc--------cCccEEEECCCCCCCChHHHHHHHCCCc
Confidence 478888887643 22 888999998873 2455555 3345555431123356788999999999
Q ss_pred EEEec
Q psy12587 310 VIAVN 314 (390)
Q Consensus 310 vi~~~ 314 (390)
||.-+
T Consensus 74 IvsE~ 78 (113)
T 2cok_A 74 VVSED 78 (113)
T ss_dssp EECTH
T ss_pred EEeHH
Confidence 99744
No 158
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=40.57 E-value=19 Score=31.28 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=53.7
Q ss_pred CeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC
Q psy12587 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS 273 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~ 273 (390)
++.|+.+|--.-. ..-++++..+..-..- ..+.+++-+.+.+. +..++.+++++.+ .+ +-+
T Consensus 6 klrvgiIG~G~ig---~~h~~~~~~~~~~~~~--~~~~~l~av~d~~~---------~~a~~~a~~~g~~-~~----~~d 66 (390)
T 4h3v_A 6 NLGIGLIGYAFMG---AAHSQAWRSAPRFFDL--PLHPDLNVLCGRDA---------EAVRAAAGKLGWS-TT----ETD 66 (390)
T ss_dssp EEEEEEECHHHHH---HHHHHHHHHHHHHSCC--SSEEEEEEEECSSH---------HHHHHHHHHHTCS-EE----ESC
T ss_pred cCcEEEEcCCHHH---HHHHHHHHhCcccccc--ccCceEEEEEcCCH---------HHHHHHHHHcCCC-cc----cCC
Confidence 4566666632111 1235555555432100 01246665555433 6778888888764 22 123
Q ss_pred hHHHHHHHHh--cceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 274 DAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 274 ~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
.+ ++++. .|+++..+....-.-.+.+|+..|++|++=.
T Consensus 67 ~~---~ll~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EK 106 (390)
T 4h3v_A 67 WR---TLLERDDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEK 106 (390)
T ss_dssp HH---HHTTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred HH---HHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCCceeec
Confidence 33 56654 6777665533222335678999999999843
No 159
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=40.56 E-value=47 Score=28.90 Aligned_cols=77 Identities=9% Similarity=-0.001 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCE
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPV 310 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pv 310 (390)
.-=+|+|.-... ......+.+++++++.|....+...|.++.+.+..+ ..|++|..+-. -+++.+.-.+-+||
T Consensus 266 ~~GIIvgTLg~Q--~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF--~iD~fV~vaCP---rlsidd~~~F~KPv 338 (378)
T 3lzd_A 266 KFGVIVSIKKGQ--LRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGF--PFEAYVVVACP---RVPLDDYGAWRKPV 338 (378)
T ss_dssp EEEEEEECSTTT--CCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTS--CCSEEEECSCT---HHHHSCCSCCSSCE
T ss_pred EEEEEEeCCccC--CCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC--CCCEEEEecCC---CccccchhhCCCcc
Confidence 334566654332 223445788889999988777778899999987765 49999986532 23455566677777
Q ss_pred EEec
Q psy12587 311 IAVN 314 (390)
Q Consensus 311 i~~~ 314 (390)
|++-
T Consensus 339 LTPy 342 (378)
T 3lzd_A 339 LTPK 342 (378)
T ss_dssp ECHH
T ss_pred cCHH
Confidence 7643
No 160
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=40.47 E-value=1.1e+02 Score=24.31 Aligned_cols=102 Identities=12% Similarity=-0.015 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEE
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCII 288 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v 288 (390)
...+++++...++... ++-++|..... ..+....+-+++ .+....+.+.+|+...+.
T Consensus 92 ~~Dil~aL~~a~~~~~-------kIavVg~~~~~--------~~~~~i~~ll~~--~i~~~~~~~~ee~~~~i~------ 148 (225)
T 2pju_A 92 GYDVLQFLAKAGKLTS-------SIGVVTYQETI--------PALVAFQKTFNL--RLDQRSYITEEDARGQIN------ 148 (225)
T ss_dssp HHHHHHHHHHTTCTTS-------CEEEEEESSCC--------HHHHHHHHHHTC--CEEEEEESSHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhhCC-------cEEEEeCchhh--------hHHHHHHHHhCC--ceEEEEeCCHHHHHHHHH------
Confidence 4667888888877543 45666655544 666766666765 466677777777655443
Q ss_pred eCCCCCCCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhc
Q psy12587 289 YTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD 347 (390)
Q Consensus 289 ~ps~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~ 347 (390)
++..-|+-+|..+.....-.-+.|-+++++. +.+++.+++.+++.
T Consensus 149 -------------~l~~~G~~vVVG~~~~~~~A~~~Gl~~vlI~-s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 149 -------------ELKANGTEAVVGAGLITDLAEEAGMTGIFIY-SAATVRQAFSDALD 193 (225)
T ss_dssp -------------HHHHTTCCEEEESHHHHHHHHHTTSEEEESS-CHHHHHHHHHHHHH
T ss_pred -------------HHHHCCCCEEECCHHHHHHHHHcCCcEEEEC-CHHHHHHHHHHHHH
Confidence 4444555555544222111112344566666 57777777777654
No 161
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=40.31 E-value=98 Score=22.02 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=60.0
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCC-CCCCCccHHhhhh-
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPS-NEHFGIVPIEAMF- 305 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~-~e~~~~~~~Ea~a- 305 (390)
..++.|+.+.+ .....+.....+.+. .......-+..+....+. ..|++++-.. .+.-|..+++.+.
T Consensus 15 ~~~iLivdd~~-------~~~~~l~~~L~~~~~--~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 85 (152)
T 3eul_A 15 KVRVVVGDDHP-------LFREGVVRALSLSGS--VNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRS 85 (152)
T ss_dssp CEEEEEECSSH-------HHHHHHHHHHHHHSS--EEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHH
T ss_pred eEEEEEEcCCH-------HHHHHHHHHHhhCCC--eEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 35666666442 223445555555431 111111223334444443 3566665433 2333444444433
Q ss_pred --cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 --CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 --~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..+|||.. .... ..+.+..|..+++..+ +.+++.++|..++....
T Consensus 86 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 86 YELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred cCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 35677763 3222 2234566778999999 99999999999987654
No 162
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=40.12 E-value=97 Score=21.91 Aligned_cols=62 Identities=6% Similarity=0.094 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCC---cEEEecCCChHHHHHHHH--hcceEEeCCCCC-C----CCccHHhhh--hcCCCEEE
Q psy12587 251 KELGVLVKKLKLSD---NVLFLTSPSDAAKISLFK--FCHCIIYTPSNE-H----FGIVPIEAM--FCKRPVIA 312 (390)
Q Consensus 251 ~~~~~~~~~~~l~~---~v~~~g~~~~~e~~~~~~--~adv~v~ps~~e-~----~~~~~~Ea~--a~G~pvi~ 312 (390)
+++.+.++..|++- .......-+.+++.++-. .+|++|+.+... + +-.++.|.+ .+++||+.
T Consensus 73 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 73 VQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEE
Confidence 34444555555543 333332234556666666 688888876532 1 222344444 35788864
No 163
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=39.97 E-value=41 Score=25.38 Aligned_cols=106 Identities=13% Similarity=0.176 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.|+.+.+ .....+....+..|. .|. -.-+..+..+.+.. .|++++-.. .+.-|..+++.+.
T Consensus 8 ~~iLivdd~~-------~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~ 76 (184)
T 3rqi_A 8 KNFLVIDDNE-------VFAGTLARGLERRGY--AVR--QAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDL 76 (184)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEE--EECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHH
T ss_pred CeEEEEcCCH-------HHHHHHHHHHHHCCC--EEE--EeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhc
Confidence 5677776543 233556666666553 232 22344555555554 467766432 3344555655543
Q ss_pred -cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 -CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 -~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+|||.- .... ..+.+..|..+++..+ +.+++..+|..++.
T Consensus 77 ~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 77 QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp CTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 46788773 3322 2334556778999999 99999999877654
No 164
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=39.90 E-value=92 Score=21.58 Aligned_cols=109 Identities=10% Similarity=0.099 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh-cceEEeCCC-CCCCCccHHhhhh--c
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF-CHCIIYTPS-NEHFGIVPIEAMF--C 306 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~-adv~v~ps~-~e~~~~~~~Ea~a--~ 306 (390)
.++.++.+.+ .....+....+..|. .|.. .-+..+....+.. .|++++-.. .+.-|..+++.+. .
T Consensus 8 ~~ILivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~ 76 (136)
T 1dcf_A 8 LKVLVMDENG-------VSRMVTKGLLVHLGC--EVTT--VSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKF 76 (136)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEEE--ESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHH
T ss_pred CeEEEEeCCH-------HHHHHHHHHHHHcCC--eEEE--eCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhh
Confidence 6677776543 233556666666553 2332 2334444444432 377776433 2334555555553 1
Q ss_pred -----CCC-EE-EecCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 307 -----KRP-VI-AVNSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 307 -----G~p-vi-~~~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..| +| .|..... .+.+..|..+++..| +.+++.+++.+++....
T Consensus 77 ~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 131 (136)
T 1dcf_A 77 TKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPRV 131 (136)
T ss_dssp C-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCCC
T ss_pred hhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchhh
Confidence 344 44 3443332 234456778999999 99999999999876543
No 165
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=39.19 E-value=87 Score=21.12 Aligned_cols=107 Identities=5% Similarity=0.092 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC--CCCCccHHhhhh-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN--EHFGIVPIEAMF- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~--e~~~~~~~Ea~a- 305 (390)
.++.++.+.+ .....+....++.|. .+.. .-+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 6 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~ 74 (127)
T 2gkg_A 6 KKILIVESDT-------ALSATLRSALEGRGF--TVDE--TTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKK 74 (127)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHHTC--EEEE--ECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHH
T ss_pred CeEEEEeCCH-------HHHHHHHHHHHhcCc--eEEE--ecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhc
Confidence 3566666543 233566666666554 2332 2344444555543 5777664332 223445555543
Q ss_pred ----cCCCEEEecCCCc----ccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 306 ----CKRPVIAVNSGGP----KESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 306 ----~G~pvi~~~~~~~----~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
..+|+|.. .... .+.+..|..+++..+ +.+++...+..++..+
T Consensus 75 ~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 75 DDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp STTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcCC
Confidence 46888876 3222 234456777899999 9999999999987654
No 166
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=38.81 E-value=1.2e+02 Score=26.49 Aligned_cols=30 Identities=10% Similarity=-0.094 Sum_probs=18.8
Q ss_pred HHHHHHHhcceEEeCCCCCCCCccHHhhhh
Q psy12587 276 AKISLFKFCHCIIYTPSNEHFGIVPIEAMF 305 (390)
Q Consensus 276 e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a 305 (390)
.+.+.+..+|+++-.|...-+.--+++.|+
T Consensus 256 ~L~eav~~ADVlIG~Sap~l~t~emVk~Ma 285 (388)
T 1vl6_A 256 DLETALEGADFFIGVSRGNILKPEWIKKMS 285 (388)
T ss_dssp CHHHHHTTCSEEEECSCSSCSCHHHHTTSC
T ss_pred hHHHHHccCCEEEEeCCCCccCHHHHHhcC
Confidence 367889999999987642222223555554
No 167
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=38.71 E-value=94 Score=21.36 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=39.0
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCC-ccHHhhhhcCCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFG-IVPIEAMFCKRP 309 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~-~~~~Ea~a~G~p 309 (390)
..++|.|.-....+ ++++++++.+|. .+.+.++ +..|++|.... .| .++-.|...|+|
T Consensus 36 ~~~v~TG~l~~~~R------~e~~~~i~~~Gg----~v~~sVS--------kkTd~LV~G~~---~g~sK~~kA~~lgI~ 94 (109)
T 2k6g_A 36 LIFVITGVLESIER------DEAKSLIERYGG----KVTGNVS--------KKTNYLVMGRD---SGQSKSDKAAALGTK 94 (109)
T ss_dssp CEEEEESBCSSCCH------HHHHHHHHHTTC----EEESSCC--------TTCCEEEECBC---CCHHHHHHHHHHTCE
T ss_pred CEEEEeeeCCCCCH------HHHHHHHHHcCC----EeeCccc--------CCceEEEECCC---CChHHHHHHHHcCCe
Confidence 67778887643222 788888888763 2445555 34566666432 23 577778888888
Q ss_pred EEE
Q psy12587 310 VIA 312 (390)
Q Consensus 310 vi~ 312 (390)
||.
T Consensus 95 Ii~ 97 (109)
T 2k6g_A 95 IID 97 (109)
T ss_dssp EEC
T ss_pred EEe
Confidence 875
No 168
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=37.97 E-value=1.3e+02 Score=22.82 Aligned_cols=109 Identities=10% Similarity=0.123 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a-- 305 (390)
.++.|+.+.+ .....+.......|. .+.. ..-+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 14 ~~iLivdd~~-------~~~~~l~~~L~~~g~--~v~~-~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~ 83 (205)
T 1s8n_A 14 RRVLIAEDEA-------LIRMDLAEMLREEGY--EIVG-EAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASK 83 (205)
T ss_dssp CEEEEECSSH-------HHHHHHHHHHHHTTC--EEEE-EESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred ccEEEEECCH-------HHHHHHHHHHHHCCC--EEEE-EeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhc
Confidence 4566666543 223455555555443 2220 11233444444443 5676664332 233444554443
Q ss_pred cCCCEEE-ecCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 306 CKRPVIA-VNSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 306 ~G~pvi~-~~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
...|+|. |.... ..+.+..|..+++..| +.+++..+|..++...
T Consensus 84 ~~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 84 RIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp TCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2347665 33222 2344556778899999 9999999999887643
No 169
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=37.95 E-value=1e+02 Score=21.51 Aligned_cols=107 Identities=8% Similarity=0.100 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a-- 305 (390)
.++.++.+.+ .....+....+..+. .+... -+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 11 ~~iLivdd~~-------~~~~~l~~~L~~~~~--~v~~~--~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~ 79 (140)
T 3c97_A 11 LSVLIAEDND-------ICRLVAAKALEKCTN--DITVV--TNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNY 79 (140)
T ss_dssp CEEEEECCCH-------HHHHHHHHHHTTTCS--EEEEE--SSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHH
T ss_pred ceEEEEcCCH-------HHHHHHHHHHHHcCC--ceEEE--CCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhh
Confidence 5677777543 223445555555442 34433 344555555554 5787775433 233455555553
Q ss_pred ------cCCCEEEe-cCCCcccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 ------CKRPVIAV-NSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 ------~G~pvi~~-~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|.. ...........|..+++..+ +.+++..+|..++..
T Consensus 80 ~~~~~~~~~~ii~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 80 ERTHNTKRASIIAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp HHHHTCCCCCCEEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred hhhcCCCceEEEEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 35666653 33322233344557899999 999999999988754
No 170
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=37.61 E-value=49 Score=22.61 Aligned_cols=106 Identities=9% Similarity=0.133 Sum_probs=59.8
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh---
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF--- 305 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a--- 305 (390)
++.++.+.+ .....+....+..|. .+.. .-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 4 ~ilivdd~~-------~~~~~l~~~l~~~g~--~v~~--~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 72 (127)
T 2jba_A 4 RILVVEDEA-------PIREMVCFVLEQNGF--QPVE--AEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRES 72 (127)
T ss_dssp EEEEECSCH-------HHHHHHHHHHHHTTC--EEEE--ECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTST
T ss_pred EEEEEcCCH-------HHHHHHHHHHHHCCc--eEEE--eCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCc
Confidence 456666543 233556666666553 2332 2333443444433 467665432 2233455555553
Q ss_pred --cCCCEEEe-cCC---CcccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 --CKRPVIAV-NSG---GPKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 --~G~pvi~~-~~~---~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
.++|+|.- ... ...+.+..|..+++..+ +.+++..++..++..
T Consensus 73 ~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 73 MTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp TTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 46787763 322 22344566778899999 999999999887653
No 171
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=37.51 E-value=2.1e+02 Score=24.98 Aligned_cols=107 Identities=14% Similarity=0.174 Sum_probs=64.1
Q ss_pred EEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCc------chhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 197 FLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNI------ENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 197 i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~------~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
++.+|-...+ ..+..++.+..+++.+ ..++..+...+++. .+.+-...+.+.+++.|++ .+..
T Consensus 144 ~~Iigpcsve-s~e~a~~~a~~~k~aG-------a~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~---~~te 212 (385)
T 3nvt_A 144 VFVFGPCSVE-SYEQVAAVAESIKAKG-------LKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLG---VISE 212 (385)
T ss_dssp EEEEECSBCC-CHHHHHHHHHHHHHTT-------CCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCE---EEEE
T ss_pred EEEEEeCCcC-CHHHHHHHHHHHHHcC-------CCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCE---EEEe
Confidence 3455555444 7888888888888764 44555554332211 1124457888888888873 3333
Q ss_pred CCChHHHHHHHHhcceEEeCCCCCCCCccHHh-hhhcCCCEEEecC
Q psy12587 271 SPSDAAKISLFKFCHCIIYTPSNEHFGIVPIE-AMFCKRPVIAVNS 315 (390)
Q Consensus 271 ~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~E-a~a~G~pvi~~~~ 315 (390)
..+...+..+...+|++=.||.. .....+++ +...|+||+.+..
T Consensus 213 ~~d~~~~~~l~~~vd~lkIgs~~-~~n~~LL~~~a~~gkPVilk~G 257 (385)
T 3nvt_A 213 IVTPADIEVALDYVDVIQIGARN-MQNFELLKAAGRVDKPILLKRG 257 (385)
T ss_dssp CCSGGGHHHHTTTCSEEEECGGG-TTCHHHHHHHHTSSSCEEEECC
T ss_pred cCCHHHHHHHHhhCCEEEECccc-ccCHHHHHHHHccCCcEEEecC
Confidence 44444444444458888777752 12234554 4458999999874
No 172
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=37.50 E-value=99 Score=25.99 Aligned_cols=84 Identities=8% Similarity=0.030 Sum_probs=49.5
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhcCCCEEEecCCCcccce-e----c--CcceeeecC-CHHHHHHHHHHHhc-
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESV-V----D--GRTGFLCES-NEEAFAKAMKKIVD- 347 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i-~----~--~~~g~~~~~-~~~~l~~~i~~l~~- 347 (390)
..-+++||+++.-.. .|+|--.+++... +.++|.... +...+- . + .+.-++.++ +...+++.|.+.|.
T Consensus 75 ~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~-gi~~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~~L~~ 152 (307)
T 3ujp_A 75 IVKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTE-GIEPIPIADGPYTDKPNPHAWMSPRNALVYVENIRQAFVE 152 (307)
T ss_dssp HHHHHHCSEEEECCTTSSTTHHHHHHTSC-SCCEEETTT-TCCCCBCCSSSSTTSBCCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEcCCChHHHHHHHHHhCC-CCCEEEeeC-CccccccccccCCCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 578999999988653 6766666776653 455555322 221110 0 0 122355566 77777777777664
Q ss_pred -CChhHHHHHHHHHHHHH
Q psy12587 348 -NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 348 -~~~~~~~~~~~~~~~~~ 364 (390)
||+ ......+|+.++.
T Consensus 153 ~DP~-~a~~Y~~Na~~~~ 169 (307)
T 3ujp_A 153 LDPD-NAKYYNANAAVYS 169 (307)
T ss_dssp HCGG-GHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHHHH
Confidence 676 6666666666655
No 173
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=37.30 E-value=50 Score=29.07 Aligned_cols=101 Identities=11% Similarity=-0.023 Sum_probs=57.3
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
+++.|..+|--.-. ...++++.++....++ ...+++++-+.+.+. +..++.+++++.+ .+ +-
T Consensus 25 ~klrvgiIG~G~ig---~~h~~~~~~~~~~~~~-~~~~~elvav~d~~~---------~~a~~~a~~~~~~-~~----y~ 86 (412)
T 4gqa_A 25 ARLNIGLIGSGFMG---QAHADAYRRAAMFYPD-LPKRPHLYALADQDQ---------AMAERHAAKLGAE-KA----YG 86 (412)
T ss_dssp CEEEEEEECCSHHH---HHHHHHHHHHHHHCTT-SSSEEEEEEEECSSH---------HHHHHHHHHHTCS-EE----ES
T ss_pred ccceEEEEcCcHHH---HHHHHHHHhccccccc-cCCCeEEEEEEcCCH---------HHHHHHHHHcCCC-eE----EC
Confidence 56777777742111 2346666665543221 001366665554433 6778888888763 22 12
Q ss_pred ChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 273 SDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 273 ~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+.+ ++++ ..|+++..+....-.-.+.+|+..|++|++=.
T Consensus 87 d~~---~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 127 (412)
T 4gqa_A 87 DWR---ELVNDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEK 127 (412)
T ss_dssp SHH---HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred CHH---HHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeec
Confidence 333 5665 46777665433222335678999999999844
No 174
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=37.11 E-value=1.5e+02 Score=24.83 Aligned_cols=85 Identities=7% Similarity=-0.017 Sum_probs=48.8
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhc-CCCEEEecCCCcccc--ee---------------cCcceeeecC-CHHH
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFC-KRPVIAVNSGGPKES--VV---------------DGRTGFLCES-NEEA 337 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~-G~pvi~~~~~~~~e~--i~---------------~~~~g~~~~~-~~~~ 337 (390)
..-+++||++|.-.. .|+|--.+++++.. ++++|.... ++.-+ -. ..+.-++.++ +...
T Consensus 65 ~~~l~~ADlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~s~-~i~~~~~~~~~~~~~~~~~~~~~~~~DPHvWldp~n~~~ 143 (312)
T 2o1e_A 65 IANIQDADLFVYNSEYMETWVPSAEKSMGQGHAVFVNASK-GIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVLAQK 143 (312)
T ss_dssp HHHHHHSSEEEESCTTTSTTHHHHHHTTCSSSCEEEETTT-TCCCCCC----------------CCCCCGGGGSHHHHHH
T ss_pred HHHHhcCCEEEEcCCChHhHHHHHHHhcccCCCeEEEecC-CcccccCcccccccccccccccCCCCCCCcccCHHHHHH
Confidence 577899999988654 67766677777653 344444321 21100 00 0122355555 6667
Q ss_pred HHHHHHHHhc--CChhHHHHHHHHHHHHH
Q psy12587 338 FAKAMKKIVD--NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 338 l~~~i~~l~~--~~~~~~~~~~~~~~~~~ 364 (390)
+++.|.+.|. +|+ ......+|+..+.
T Consensus 144 ~a~~I~~~L~~~DP~-~a~~Y~~N~~~~~ 171 (312)
T 2o1e_A 144 EVKNITAQIVKQDPD-NKEYYEKNSKEYI 171 (312)
T ss_dssp HHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 7777766654 676 6666666666655
No 175
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=36.92 E-value=1.4e+02 Score=22.86 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=57.5
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH---------------hcceEEeCCC-CC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK---------------FCHCIIYTPS-NE 294 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~---------------~adv~v~ps~-~e 294 (390)
.++.|+.+.+ .....+....++.|.. .|... -+..+..+.+. ..|++++-.. .+
T Consensus 62 ~~ILiVdDd~-------~~~~~l~~~L~~~g~~-~v~~a--~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~ 131 (206)
T 3mm4_A 62 KRVLVVDDNF-------ISRKVATGKLKKMGVS-EVEQC--DSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPE 131 (206)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTCS-EEEEE--SSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSS
T ss_pred CEEEEEeCCH-------HHHHHHHHHHHHcCCC-eeeee--CCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCC
Confidence 5666666442 2234555566655431 23322 23344445554 3577776433 23
Q ss_pred CCCccHHhhhh-------cCCCEEEecCCC-c----ccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 295 HFGIVPIEAMF-------CKRPVIAVNSGG-P----KESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 295 ~~~~~~~Ea~a-------~G~pvi~~~~~~-~----~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
.-|..+++.+. ..+|||...... . .+.+..|..+++..+ + +|.++|.+++....
T Consensus 132 ~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 132 MDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp SCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred CCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 33455555443 467887743221 2 233456778899988 7 89999999886544
No 176
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=36.52 E-value=1.8e+02 Score=23.96 Aligned_cols=100 Identities=10% Similarity=0.091 Sum_probs=59.5
Q ss_pred ccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcc------hhHHHHHHHHHHHHcCCCCcEEEecCCChHHHH
Q psy12587 205 RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIE------NVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKI 278 (390)
Q Consensus 205 ~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~------~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~ 278 (390)
.....+..++.+..+++.+-+ ++-.+...+++.. +.+-...+++.+++.|++- +....+...+.
T Consensus 47 ~~~~~e~a~~~a~~~k~~ga~-------~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~---~te~~d~~~~~ 116 (276)
T 1vs1_A 47 SVESWEQVREAALAVKEAGAH-------MLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPV---VTEVLDPRHVE 116 (276)
T ss_dssp BCCCHHHHHHHHHHHHHHTCS-------EEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCE---EEECCCGGGHH
T ss_pred CCCCHHHHHHHHHHHHHhCCC-------EEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcE---EEecCCHHHHH
Confidence 555778888888888776543 3333332222211 2455688899999999853 23333433333
Q ss_pred HHHHhcceEEeCCCCCCCCccHHhhh-hcCCCEEEecC
Q psy12587 279 SLFKFCHCIIYTPSNEHFGIVPIEAM-FCKRPVIAVNS 315 (390)
Q Consensus 279 ~~~~~adv~v~ps~~e~~~~~~~Ea~-a~G~pvi~~~~ 315 (390)
.+-...|++-.+|.. .....+++++ ..|+||+.+..
T Consensus 117 ~l~~~vd~~kIgs~~-~~n~~ll~~~a~~~kPV~lk~G 153 (276)
T 1vs1_A 117 TVSRYADMLQIGARN-MQNFPLLREVGRSGKPVLLKRG 153 (276)
T ss_dssp HHHHHCSEEEECGGG-TTCHHHHHHHHHHTCCEEEECC
T ss_pred HHHHhCCeEEECccc-ccCHHHHHHHHccCCeEEEcCC
Confidence 333348888888752 2234455554 48999999774
No 177
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=36.47 E-value=1.1e+02 Score=26.10 Aligned_cols=42 Identities=19% Similarity=0.053 Sum_probs=29.2
Q ss_pred HHHHHHhcceEEe--CCCCCCCCc---cHHhhhhcCCCEEEecCCCc
Q psy12587 277 KISLFKFCHCIIY--TPSNEHFGI---VPIEAMFCKRPVIAVNSGGP 318 (390)
Q Consensus 277 ~~~~~~~adv~v~--ps~~e~~~~---~~~Ea~a~G~pvi~~~~~~~ 318 (390)
+.+++++||++.+ |...++.++ ..+..|--|.-+|-+..|+.
T Consensus 188 l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~i 234 (334)
T 3kb6_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKV 234 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGG
T ss_pred HHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcccc
Confidence 4578999998765 444555554 57778877777777766654
No 178
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=36.31 E-value=56 Score=25.37 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=60.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCC-CCCCccHHhhhh---c
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN-EHFGIVPIEAMF---C 306 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~-e~~~~~~~Ea~a---~ 306 (390)
.++.++.+.+ .....+....+..+ .|.. ..+..+....+...|++++-... +.-|..+++.+. .
T Consensus 3 ~~ilivdd~~-------~~~~~l~~~L~~~~---~v~~--~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~ 70 (220)
T 1p2f_A 3 WKIAVVDDDK-------NILKKVSEKLQQLG---RVKT--FLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRP 70 (220)
T ss_dssp EEEEEECSCH-------HHHHHHHHHHTTTE---EEEE--ESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCT
T ss_pred ceEEEEeCCH-------HHHHHHHHHHHhCC---CEEE--ECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 3566666543 23345555555443 2332 23344444444567888764332 334455555443 4
Q ss_pred CCCEEEec-CCC---cccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 307 KRPVIAVN-SGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 307 G~pvi~~~-~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
.+|+|.-. ... ..+.+..|..+++..+ +.+++..+|..++.
T Consensus 71 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 71 ETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp TSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 68887743 222 2233456778999999 99999999988764
No 179
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=36.27 E-value=2.1e+02 Score=24.60 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=60.8
Q ss_pred cccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcc------hhHHHHHHHHHHHHcCCCCcEEEecCCChHHH
Q psy12587 204 ERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIE------NVEYYKELGVLVKKLKLSDNVLFLTSPSDAAK 277 (390)
Q Consensus 204 ~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~------~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~ 277 (390)
......+.+++.+..+++.+- .+.-.+...+++.. +.+-...+.+.+++.|++ .+.-..+...+
T Consensus 114 cs~es~e~a~~~a~~~k~aGa-------~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~---~~te~~d~~~~ 183 (350)
T 1vr6_A 114 CSVEGREMLMETAHFLSELGV-------KVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMY---VVTEALGEDDL 183 (350)
T ss_dssp SBCCCHHHHHHHHHHHHHTTC-------CEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCE---EEEECSSGGGH
T ss_pred CCcCCHHHHHHHHHHHHHcCC-------CeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCc---EEEEeCCHHHH
Confidence 335678888888888887654 34444433332211 245568888999999874 23333444443
Q ss_pred HHHHHhcceEEeCCCCCCCCccHHhhh-hcCCCEEEecC
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIVPIEAM-FCKRPVIAVNS 315 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~~~Ea~-a~G~pvi~~~~ 315 (390)
..+-..+|++-.+|.. .....+++++ ..|+||+.+..
T Consensus 184 ~~l~~~vd~lkIgAr~-~~n~~LL~~va~~~kPVilk~G 221 (350)
T 1vr6_A 184 PKVAEYADIIQIGARN-AQNFRLLSKAGSYNKPVLLKRG 221 (350)
T ss_dssp HHHHHHCSEEEECGGG-TTCHHHHHHHHTTCSCEEEECC
T ss_pred HHHHHhCCEEEECccc-ccCHHHHHHHHccCCcEEEcCC
Confidence 3333448888888752 2233345444 58999999874
No 180
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=36.16 E-value=1.6e+02 Score=23.13 Aligned_cols=92 Identities=12% Similarity=-0.005 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCCcEEEecC--CChHHHHHHHHhcceEEeCCCCCCC-C-ccHHhhhhcCCCEEEecCC------Cccc
Q psy12587 251 KELGVLVKKLKLSDNVLFLTS--PSDAAKISLFKFCHCIIYTPSNEHF-G-IVPIEAMFCKRPVIAVNSG------GPKE 320 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~--~~~~e~~~~~~~adv~v~ps~~e~~-~-~~~~Ea~a~G~pvi~~~~~------~~~e 320 (390)
+++.+.+++++. +-+...|+ +=..++.+.+..--+-++||..-.| | ..+-.|+..|....+...- ...+
T Consensus 72 ~~~~~~l~~~~~-Dliv~a~y~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~ 150 (212)
T 3av3_A 72 SEILRELKGRQI-DWIALAGYMRLIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDEGMDTGP 150 (212)
T ss_dssp HHHHHHHHHTTC-CEEEESSCCSCCCHHHHHHTTTCEEEEESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSC
T ss_pred HHHHHHHHhcCC-CEEEEchhhhhCCHHHHhhhcCCEEEEecCcCCCCCCcCHHHHHHHcCCCeEEEEEEEECCCCCCCC
Confidence 345555555542 44444443 3234444444444456667663222 2 2456678888776553321 2233
Q ss_pred ceecCcceeeec-C-CHHHHHHHHHHH
Q psy12587 321 SVVDGRTGFLCE-S-NEEAFAKAMKKI 345 (390)
Q Consensus 321 ~i~~~~~g~~~~-~-~~~~l~~~i~~l 345 (390)
++... -+-+. . +.+++.+.+..+
T Consensus 151 Ii~Q~--~v~I~~~dt~~~L~~r~~~~ 175 (212)
T 3av3_A 151 VIAQR--VVPIVPGEPIEALEERIHQV 175 (212)
T ss_dssp EEEEE--EEECCTTCCHHHHHHHHHHH
T ss_pred EEEEE--EEecCCCCCHHHHHHHHHHH
Confidence 33221 12222 3 777887776654
No 181
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=36.15 E-value=13 Score=31.11 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.1
Q ss_pred CCCcchhhhHhh-HhhhhcCCceeec
Q psy12587 1 MLGATARLTITA-TAWGATGPRTTAH 25 (390)
Q Consensus 1 ~~GG~~~~~~~l-~~L~~~G~~V~~~ 25 (390)
++||..-.=..| +.|.++||+|+++
T Consensus 5 VTGatGfIG~~L~~~L~~~G~~V~~l 30 (298)
T 4b4o_A 5 VGGGTGFIGTALTQLLNARGHEVTLV 30 (298)
T ss_dssp EETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 468888888899 9999999999887
No 182
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=35.84 E-value=85 Score=26.09 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=39.2
Q ss_pred HHhcceEEeC-CCCCCCCcc-HHhhhhcCCCEEEecCCCcccce-ecCcceeeecCCHHHHHHHHHHHhcCCh
Q psy12587 281 FKFCHCIIYT-PSNEHFGIV-PIEAMFCKRPVIAVNSGGPKESV-VDGRTGFLCESNEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 281 ~~~adv~v~p-s~~e~~~~~-~~Ea~a~G~pvi~~~~~~~~e~i-~~~~~g~~~~~~~~~l~~~i~~l~~~~~ 350 (390)
...||++|.- +....+|.. +.+....|.|+|.-+.+....+- .+....+.+..+..++...+.+.+.-.+
T Consensus 209 ~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~~~ 281 (289)
T 1q1a_A 209 HPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQE 281 (289)
T ss_dssp -CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTCHH
T ss_pred hccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCCHH
Confidence 5689987764 333334442 44554568999887765543110 1112345555577777777776665444
No 183
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=35.82 E-value=1.4e+02 Score=22.61 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.++.+.+ .....+....+..|. .|. ..-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 5 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~ 73 (208)
T 1yio_A 5 PTVFVVDDDM-------SVREGLRNLLRSAGF--EVE--TFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAI 73 (208)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHTTTC--EEE--EESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred CEEEEEcCCH-------HHHHHHHHHHHhCCc--eEE--EcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4677776543 333556666666553 233 23344554555543 467766433 2334555555543
Q ss_pred -cCCCEEEe-cCC---CcccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 -CKRPVIAV-NSG---GPKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 -~G~pvi~~-~~~---~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
.++|+|.- ... ...+.+..|..+++..+ +.+++..+|..++..
T Consensus 74 ~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 74 SDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp TCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 46888773 322 22334456778899999 999999999988754
No 184
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=35.66 E-value=93 Score=23.46 Aligned_cols=97 Identities=19% Similarity=0.264 Sum_probs=55.2
Q ss_pred HHHHHHHHHHH--HcCCCCcEEEecCCChHHHHHHHHhc-----c-eEEeCCCCCCCCccHHhhhh-cCCCEEEecCCC-
Q psy12587 248 EYYKELGVLVK--KLKLSDNVLFLTSPSDAAKISLFKFC-----H-CIIYTPSNEHFGIVPIEAMF-CKRPVIAVNSGG- 317 (390)
Q Consensus 248 ~y~~~~~~~~~--~~~l~~~v~~~g~~~~~e~~~~~~~a-----d-v~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~~~- 317 (390)
+....+++.+. ++|+ .+.+...=...++.+.+..| | +++.|.-+...+..+.+|++ .++|+|=--...
T Consensus 38 di~~~l~~~a~~~~~g~--~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAyTHtSvAlrDAl~~v~~P~VEVHiSNi 115 (176)
T 2c4w_A 38 QIHEIMQTFVKQGNLDV--ELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNI 115 (176)
T ss_dssp HHHHHHHHHHHHTTCCE--EEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGGGGTCHHHHHHHHTSSSCEEEEESSCG
T ss_pred HHHHHHHHHhccccCCC--EEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchhccchHHHHHHHHhCCCCEEEEEecCc
Confidence 33345555555 4443 35554444445555555543 3 56778777778899999986 689998733322
Q ss_pred -ccccee------cCcceeeecCCHHHHHHHHHHHh
Q psy12587 318 -PKESVV------DGRTGFLCESNEEAFAKAMKKIV 346 (390)
Q Consensus 318 -~~e~i~------~~~~g~~~~~~~~~l~~~i~~l~ 346 (390)
.+|-+. +...|.++-.-.....-++..++
T Consensus 116 ~aRE~FRh~S~is~~a~GvI~G~G~~gY~lAl~al~ 151 (176)
T 2c4w_A 116 QAREEFRKNSYTGAACGGVIMGFGPLGYNMALMAMV 151 (176)
T ss_dssp GGSCGGGTCCHHHHHSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccccccccceeEEEEecCHHHHHHHHHHHH
Confidence 133322 22345555435566666666654
No 185
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=35.15 E-value=1.1e+02 Score=21.27 Aligned_cols=107 Identities=9% Similarity=0.104 Sum_probs=60.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEe-cCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhhc
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFL-TSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMFC 306 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~-g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a~ 306 (390)
.++.++.+.+ .....+.......+ .+... ..-+..+....+.. .|++++-... +.-|..+++.+..
T Consensus 10 ~~iLivdd~~-------~~~~~l~~~L~~~~---~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 79 (143)
T 2qv0_A 10 MKVIIVEDEF-------LAQQELSWLINTHS---QMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQ 79 (143)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHHS---CCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTT
T ss_pred eEEEEEcCCH-------HHHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHc
Confidence 6777777543 22355555555542 12222 22344454555554 5777765332 3344555655543
Q ss_pred ---CCCEEE-ecC-CCcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 307 ---KRPVIA-VNS-GGPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 307 ---G~pvi~-~~~-~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..|+|. +.. ....+.+..|..+++..+ +.+++..+|..++.
T Consensus 80 ~~~~~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 80 FAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp STTCCEEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCceEEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 344544 332 222334456778899999 99999999998865
No 186
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=35.06 E-value=1.6e+02 Score=25.29 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhh-cCCCEEEecC
Q psy12587 250 YKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMF-CKRPVIAVNS 315 (390)
Q Consensus 250 ~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~ 315 (390)
+..+.+.+++.|+ ..+.-..+... .+++.. +|++=.+| .+-....++++++ .|+|||.+..
T Consensus 80 ~~~L~~~~~~~Gi---~~~st~fD~~s-vd~l~~~~v~~~KI~S-~~~~N~pLL~~va~~gKPviLstG 143 (350)
T 3g8r_A 80 MQKLVAEMKANGF---KAICTPFDEES-VDLIEAHGIEIIKIAS-CSFTDWPLLERIARSDKPVVASTA 143 (350)
T ss_dssp HHHHHHHHHHTTC---EEEEEECSHHH-HHHHHHTTCCEEEECS-SSTTCHHHHHHHHTSCSCEEEECT
T ss_pred HHHHHHHHHHcCC---cEEeccCCHHH-HHHHHHcCCCEEEECc-ccccCHHHHHHHHhhCCcEEEECC
Confidence 4667778888776 23333344444 355554 56666665 3444556776665 7899988763
No 187
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=34.99 E-value=82 Score=21.76 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=41.7
Q ss_pred HHHHhcceEEeCCCCCCCC-----ccHHhhhhcCCCEEEecCCCcc---cceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 279 SLFKFCHCIIYTPSNEHFG-----IVPIEAMFCKRPVIAVNSGGPK---ESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 279 ~~~~~adv~v~ps~~e~~~-----~~~~Ea~a~G~pvi~~~~~~~~---e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
.-++.||+++...-..+.. .=+-.|-..|+|+|+-...+.. +-+++ .+--+-. +.+.+.++|...++
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~~l~~--~a~~iV~Wn~~~I~~aI~~~~~ 109 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPPELEA--VSSEVVGWNPHCIRDALEDALD 109 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCTTHHH--HCSEEECSCHHHHHHHHHHHHC
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCHHHHh--hCceeccCCHHHHHHHHHhccC
Confidence 4578888877654322211 1245678899999997765543 22321 2333445 88999999988753
No 188
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=34.72 E-value=62 Score=27.04 Aligned_cols=55 Identities=18% Similarity=0.106 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+..++.+++++.+. +-+.+ +++...|+++..+......-.+.+|+..|++|++-.
T Consensus 43 ~~~~~~a~~~~~~~------~~~~~---~ll~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EK 97 (308)
T 3uuw_A 43 VKREKICSDYRIMP------FDSIE---SLAKKCDCIFLHSSTETHYEIIKILLNLGVHVYVDK 97 (308)
T ss_dssp HHHHHHHHHHTCCB------CSCHH---HHHTTCSEEEECCCGGGHHHHHHHHHHTTCEEEECS
T ss_pred HHHHHHHHHcCCCC------cCCHH---HHHhcCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcC
Confidence 66777777777531 23344 455589988876543333334678999999999853
No 189
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=34.61 E-value=1.1e+02 Score=21.17 Aligned_cols=109 Identities=7% Similarity=0.059 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.++.+.+ .....+....+..|. .+.. .-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 4 ~~ILivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 72 (138)
T 3c3m_A 4 YTILVVDDSP-------MIVDVFVTMLERGGY--RPIT--AFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTD 72 (138)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEEE--ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred ceEEEEeCCH-------HHHHHHHHHHHHcCc--eEEE--eCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4566666543 333556666666553 2332 2344555555554 577776433 2334556666653
Q ss_pred ---cCCCEEEe-cCCCccc-cee--cCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 ---CKRPVIAV-NSGGPKE-SVV--DGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 ---~G~pvi~~-~~~~~~e-~i~--~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..+|+|.. ....... ... .+..+++..+ +.+++..+|..++....
T Consensus 73 ~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 73 PATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp TTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred cccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhh
Confidence 35788763 3222211 111 2235888888 99999999999886554
No 190
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=34.61 E-value=1.2e+02 Score=26.27 Aligned_cols=81 Identities=10% Similarity=-0.025 Sum_probs=44.0
Q ss_pred HHHhcceEEeC-CCCCCCCcc-HHhhhhcCCCEEEecCCCcccce-ecCcceeeecCCHHHHHHHHHHHhcCChhHHHHH
Q psy12587 280 LFKFCHCIIYT-PSNEHFGIV-PIEAMFCKRPVIAVNSGGPKESV-VDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQF 356 (390)
Q Consensus 280 ~~~~adv~v~p-s~~e~~~~~-~~Ea~a~G~pvi~~~~~~~~e~i-~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~ 356 (390)
....||++|.- +....+|.. +.+....|.|+|.-+.+....+- .+....+.+..+..++...+.+.+.-.+ ....+
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~~~-~l~~~ 294 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQE-DFEKI 294 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTCHH-HHHHH
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCChh-HHHHH
Confidence 35589987764 333444543 44544568999887765543110 1122334555578888777777765554 55555
Q ss_pred HHHHH
Q psy12587 357 SQFGF 361 (390)
Q Consensus 357 ~~~~~ 361 (390)
.....
T Consensus 295 ~~~~~ 299 (361)
T 1q14_A 295 LTAQG 299 (361)
T ss_dssp HHHC-
T ss_pred HHhhh
Confidence 44443
No 191
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=34.58 E-value=92 Score=26.49 Aligned_cols=95 Identities=14% Similarity=0.013 Sum_probs=52.9
Q ss_pred CCCeEEEEeecc-cccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 192 KEDIVFLSINRY-ERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 192 ~~~~~i~~~g~~-~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
++++.++.+|-- .-. ...+.++..+ .+ +++++-+-+... +..++.+++++.+ ...
T Consensus 16 ~~~irvgiIG~G~~~g---~~~~~~l~~~---~~-----~~~lvav~d~~~---------~~~~~~a~~~~~~---~~~- 71 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAAR---ELHLPALKNL---SH-----LFEITAVTSRTR---------SHAEEFAKMVGNP---AVF- 71 (340)
T ss_dssp CCCEEEEEECCSHHHH---HTHHHHHHTT---TT-----TEEEEEEECSSH---------HHHHHHHHHHSSC---EEE-
T ss_pred CCceeEEEEecCHHHH---HHHHHHHHhC---CC-----ceEEEEEEcCCH---------HHHHHHHHHhCCC---ccc-
Confidence 467788888752 111 1234444332 13 277754444332 6677777777641 121
Q ss_pred CCChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 271 SPSDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 271 ~~~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
-+. .+++. ..|+++..+....-.-.+.+|+..|++|++-.
T Consensus 72 -~~~---~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EK 113 (340)
T 1zh8_A 72 -DSY---EELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEK 113 (340)
T ss_dssp -SCH---HHHHHSSCCSEEEECCCGGGHHHHHHHHHHTTCEEEEES
T ss_pred -CCH---HHHhcCCCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeC
Confidence 233 35666 47887776543222234678999999999843
No 192
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=34.50 E-value=23 Score=27.74 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=20.8
Q ss_pred CCCcchhh--hHhh-HhhhhcCCceeec
Q psy12587 1 MLGATARL--TITA-TAWGATGPRTTAH 25 (390)
Q Consensus 1 ~~GG~~~~--~~~l-~~L~~~G~~V~~~ 25 (390)
+.||...+ ..++ +.|.+.|++|.++
T Consensus 14 iTGs~aa~~k~~~ll~~L~~~g~eV~vv 41 (201)
T 3lqk_A 14 LTGSHCTYHEVLPQMERLVELGAKVTPF 41 (201)
T ss_dssp CCSCGGGGGGTHHHHHHHHHTTCEEEEE
T ss_pred EEChHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 45776666 8889 9999999999888
No 193
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=34.46 E-value=67 Score=26.60 Aligned_cols=86 Identities=9% Similarity=-0.028 Sum_probs=48.4
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHhhhhcCCCEEEecCCCcccc-ee--------------------c--CcceeeecC
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKES-VV--------------------D--GRTGFLCES 333 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~-i~--------------------~--~~~g~~~~~ 333 (390)
..-+++||++|.-.. .|+|-..+++++.....++.....+..-+ .. + ...-++.++
T Consensus 43 ~~~l~~Adlvv~~G~~~E~w~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~dPH~Wldp 122 (284)
T 2prs_A 43 VKRLQNADLVVWVGPEMEAFMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWLSP 122 (284)
T ss_dssp HHHHHHCSEEEECCTTTCGGGHHHHHTSCGGGEEEGGGCTTTGGGCCC---------------------CCCCCCGGGCH
T ss_pred HHHHHcCCEEEEcCCCcHHHHHHHHHhcCCCCcEEEecCCCcccccccccccccccccccccccccCCCCCCCCcccCCH
Confidence 478899999988653 67776677776653332333322222110 00 0 012245555
Q ss_pred -CHHHHHHHHHHHhc--CChhHHHHHHHHHHHHH
Q psy12587 334 -NEEAFAKAMKKIVD--NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 334 -~~~~l~~~i~~l~~--~~~~~~~~~~~~~~~~~ 364 (390)
+...+++.|.+.|. +|+ ......+|+..+.
T Consensus 123 ~~~~~~a~~I~~~L~~~dP~-~a~~y~~N~~~~~ 155 (284)
T 2prs_A 123 EIARATAVAIHGKLVELMPQ-SRAKLDANLKDFE 155 (284)
T ss_dssp HHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 66777777766654 676 6666666666655
No 194
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=33.26 E-value=1.2e+02 Score=21.15 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=43.0
Q ss_pred ChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh---cCCCEEEe-cCC---CcccceecCcceeeecC-CHHHHHHH
Q psy12587 273 SDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF---CKRPVIAV-NSG---GPKESVVDGRTGFLCES-NEEAFAKA 341 (390)
Q Consensus 273 ~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a---~G~pvi~~-~~~---~~~e~i~~~~~g~~~~~-~~~~l~~~ 341 (390)
+..+....+.. .|++++-... +.-|..+++.+. .++|+|.. ... ...+.+..|..+++..+ +.+++.++
T Consensus 37 ~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~ 116 (141)
T 3cu5_A 37 DGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDA 116 (141)
T ss_dssp SHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHH
T ss_pred cHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHH
Confidence 34444555543 5777764332 333455555543 46787763 322 23444556778899999 99999999
Q ss_pred HHHHhc
Q psy12587 342 MKKIVD 347 (390)
Q Consensus 342 i~~l~~ 347 (390)
|..++.
T Consensus 117 i~~~~~ 122 (141)
T 3cu5_A 117 LKQSIQ 122 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 195
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=33.08 E-value=30 Score=26.80 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=39.5
Q ss_pred HHHHHhcceEEeCCCCCCCCcc--HHhhhh------cCCCEEEecCCCccc-c------------eecCc-ceeeecCCH
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIV--PIEAMF------CKRPVIAVNSGGPKE-S------------VVDGR-TGFLCESNE 335 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~--~~Ea~a------~G~pvi~~~~~~~~e-~------------i~~~~-~g~~~~~~~ 335 (390)
.-+...||.+|.-+ -|+|+- ++|++. .++||+.-+..++.+ + +.... ..+.+.+|+
T Consensus 92 ~~~~~~sda~IvlP--GG~GTl~El~e~lt~~q~g~~~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~ 169 (191)
T 1t35_A 92 AKMSELADGFISMP--GGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRP 169 (191)
T ss_dssp HHHHHHCSEEEECS--CCHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEEESSH
T ss_pred HHHHHHCCEEEEeC--CCccHHHHHHHHHHHHHhCCCCCCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEEeCCH
Confidence 45677899877532 245553 788985 789999988754422 1 11111 123333378
Q ss_pred HHHHHHHHHH
Q psy12587 336 EAFAKAMKKI 345 (390)
Q Consensus 336 ~~l~~~i~~l 345 (390)
+++.+.+.+.
T Consensus 170 ~e~~~~l~~~ 179 (191)
T 1t35_A 170 DELIEQMQNY 179 (191)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 8887777653
No 196
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=33.00 E-value=1.3e+02 Score=26.51 Aligned_cols=58 Identities=10% Similarity=-0.047 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh-------cceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF-------CHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~-------adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+..++.+++++++.. .. +-+.+ +++.. .|+++..+....-.-.+.+|+..|++|++=.
T Consensus 77 ~~a~~~a~~~g~~~~-~~--~~~~~---~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 141 (417)
T 3v5n_A 77 EKAEASGRELGLDPS-RV--YSDFK---EMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDK 141 (417)
T ss_dssp HHHHHHHHHHTCCGG-GB--CSCHH---HHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEEEEES
T ss_pred HHHHHHHHHcCCCcc-cc--cCCHH---HHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeEEEEC
Confidence 667788888876421 11 22334 56665 8887776543333335678999999999844
No 197
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=32.88 E-value=2.3e+02 Score=24.05 Aligned_cols=17 Identities=6% Similarity=0.204 Sum_probs=9.5
Q ss_pred hcCHHHHHHHHHHHHHh
Q psy12587 367 KFSFQAFSIQLNTIVNN 383 (390)
Q Consensus 367 ~~~~~~~~~~~~~~~~~ 383 (390)
.-+|+.-++++.+.++.
T Consensus 232 ~Idw~~~a~~I~~~iRa 248 (329)
T 2bw0_A 232 KINWDQPAEAIHNWIRG 248 (329)
T ss_dssp BCCCSSCHHHHHHHHHT
T ss_pred EEcccCCHHHHHHHHhc
Confidence 34565555666655554
No 198
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=32.70 E-value=1.3e+02 Score=24.23 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=44.8
Q ss_pred CcEEEecC-CChH---HHHHHHHhcceEEeCCC-CCCCCccHH--hhhhcCCCEEEecCCCcccceecCcceeeecCCHH
Q psy12587 264 DNVLFLTS-PSDA---AKISLFKFCHCIIYTPS-NEHFGIVPI--EAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEE 336 (390)
Q Consensus 264 ~~v~~~g~-~~~~---e~~~~~~~adv~v~ps~-~e~~~~~~~--Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~ 336 (390)
++|.+.|. ++.. +..+.+.+||+++.-.. ...+|..-+ .|...|.|+|.-+.+...- +....+.+..+..
T Consensus 157 P~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~---d~~~~~~i~~~~~ 233 (246)
T 1yc5_A 157 PNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPF---DDIATLKYNMDVV 233 (246)
T ss_dssp EEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTT---GGGCSEEECSCHH
T ss_pred cceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCC---CcceeEEEeCCHH
Confidence 56667665 5543 34567788998776432 233443322 4556699999877654331 1223344554666
Q ss_pred HHHHHHHHH
Q psy12587 337 AFAKAMKKI 345 (390)
Q Consensus 337 ~l~~~i~~l 345 (390)
+....+.+.
T Consensus 234 ~~l~~l~~~ 242 (246)
T 1yc5_A 234 EFARRVMEE 242 (246)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
No 199
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=32.45 E-value=1.7e+02 Score=22.60 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.++.+.+ .....+....+..|. .|. ..-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 8 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~--~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~ 76 (233)
T 1ys7_A 8 PRVLVVDDDS-------DVLASLERGLRLSGF--EVA--TAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAM 76 (233)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEE--EESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred CeEEEEeCCH-------HHHHHHHHHHHhCCC--EEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 5677777543 233556666666553 233 22344554555543 577776433 2334555555543
Q ss_pred -cCCCEEEec-CC---CcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 -CKRPVIAVN-SG---GPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 -~G~pvi~~~-~~---~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
.++|||... .. ...+.+..|..+++..+ +.+++..+|..++.
T Consensus 77 ~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 77 DNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp TCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 478887732 22 23445566778999999 99999999988754
No 200
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=32.20 E-value=1.2e+02 Score=20.71 Aligned_cols=110 Identities=14% Similarity=0.187 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec-CCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT-SPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g-~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a- 305 (390)
.++.++.+.+ .....+....... ......+ .-+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 3 ~~ilivdd~~-------~~~~~l~~~l~~~---~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~ 72 (130)
T 1dz3_A 3 IKVCIADDNR-------ELVSLLDEYISSQ---PDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRA 72 (130)
T ss_dssp EEEEEECSCH-------HHHHHHHHHHHTS---TTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred eEEEEEcCCH-------HHHHHHHHHHHhC---CCceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHh
Confidence 4566666542 2234455555543 1233332 2344555555543 5777764332 233455555543
Q ss_pred ---cCCCEEE-ecCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 ---CKRPVIA-VNSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 ---~G~pvi~-~~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
...|+|. |.... ..+.+..|..+++..+ +.+++..++..++....
T Consensus 73 ~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 125 (130)
T 1dz3_A 73 GFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTT 125 (130)
T ss_dssp HCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC-
T ss_pred cCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 3456665 33322 2334456778899999 99999999998876543
No 201
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=32.06 E-value=2.2e+02 Score=23.75 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=10.6
Q ss_pred hcCHHHHHHHHHHHHHhh
Q psy12587 367 KFSFQAFSIQLNTIVNNM 384 (390)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~ 384 (390)
.-+|+.-++++.+.++.+
T Consensus 207 ~Idw~~~a~~i~~~iRa~ 224 (305)
T 2bln_A 207 FLEWHKPASVLHNMVRAV 224 (305)
T ss_dssp BCCTTSBHHHHHHHHHHT
T ss_pred EECCcCCHHHHHHHHhcc
Confidence 456666666666666544
No 202
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=31.92 E-value=50 Score=28.22 Aligned_cols=93 Identities=8% Similarity=0.038 Sum_probs=53.1
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
+.+.++.+|--.- +-...+.+++.. + +++++-+.+.+. +..++.+++++++ .+ +-
T Consensus 22 ~mirigiIG~G~i--g~~~~~~~~~~~----~-----~~~lvav~d~~~---------~~a~~~a~~~g~~-~~----y~ 76 (350)
T 4had_A 22 SMLRFGIISTAKI--GRDNVVPAIQDA----E-----NCVVTAIASRDL---------TRAREMADRFSVP-HA----FG 76 (350)
T ss_dssp CCEEEEEESCCHH--HHHTHHHHHHHC----S-----SEEEEEEECSSH---------HHHHHHHHHHTCS-EE----ES
T ss_pred CccEEEEEcChHH--HHHHHHHHHHhC----C-----CeEEEEEECCCH---------HHHHHHHHHcCCC-ee----eC
Confidence 5567777774210 111234444432 3 377765554433 6778888888864 22 22
Q ss_pred ChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhhcCCCEEEe
Q psy12587 273 SDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 273 ~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~ 313 (390)
+.+ ++++. .|+++..+....-.-.+.+|+..|++|++=
T Consensus 77 d~~---ell~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~E 116 (350)
T 4had_A 77 SYE---EMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCE 116 (350)
T ss_dssp SHH---HHHHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CHH---HHhcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEEe
Confidence 334 56654 677766553322223467899999999983
No 203
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=31.74 E-value=21 Score=28.10 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=21.0
Q ss_pred CCCcchhh--hHhh-HhhhhcCCceeec
Q psy12587 1 MLGATARL--TITA-TAWGATGPRTTAH 25 (390)
Q Consensus 1 ~~GG~~~~--~~~l-~~L~~~G~~V~~~ 25 (390)
+.||...+ ..++ +.|.+.|++|.++
T Consensus 12 iTGsiaayk~~~~ll~~L~~~g~eV~vv 39 (207)
T 3mcu_A 12 FTGSHCTYEEVMPHLEKLIAEGAEVRPV 39 (207)
T ss_dssp ECSCGGGGTTSHHHHHHHHHTTCEEEEE
T ss_pred EEChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35777777 7899 9999999999887
No 204
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=31.55 E-value=1.7e+02 Score=26.35 Aligned_cols=87 Identities=10% Similarity=0.132 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEecC---C--Ch-----------
Q psy12587 212 AIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLTS---P--SD----------- 274 (390)
Q Consensus 212 ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g~---~--~~----------- 274 (390)
++.|++...++.. +.++++.|.|... --+-+++...|++ .+|.+... + +.
T Consensus 206 llnAlki~gk~l~-----d~riV~~GAGaAG--------igia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~ 272 (487)
T 3nv9_A 206 LLNALKLVKKDIH-----ECRMVFIGAGSSN--------TTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYR 272 (487)
T ss_dssp HHHHHHHHTCCGG-----GCCEEEECCSHHH--------HHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHH
T ss_pred HHHHHHHhCCChh-----hcEEEEECCCHHH--------HHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHH
Confidence 3455555444444 3788888887543 3455555566663 34444321 1 00
Q ss_pred -------------HHHHHHHHhcceEEeCCCC--CCCCccHHhhhhcCCCEEE
Q psy12587 275 -------------AAKISLFKFCHCIIYTPSN--EHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 275 -------------~e~~~~~~~adv~v~ps~~--e~~~~~~~Ea~a~G~pvi~ 312 (390)
..+.+.++.+|+++-.|.. ..|.--++++|+ ..|+|-
T Consensus 273 k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~~pg~ft~e~V~~Ma-~~PIIF 324 (487)
T 3nv9_A 273 KWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVKAEWIKSMG-EKPIVF 324 (487)
T ss_dssp HHHHHHHSCTTCCCSHHHHHTTCSEEEECCCSSCCCCCHHHHHTSC-SSCEEE
T ss_pred HHHHHHhcccccCCCHHHHHhcCCEEEEecccCCCCCCHHHHHhhc-CCCEEE
Confidence 1245667778998887743 234334566664 455554
No 205
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=31.46 E-value=1.4e+02 Score=25.92 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh-------cceEEeCCCCCCCCccHHhhhhcCCCEEE
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF-------CHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~-------adv~v~ps~~e~~~~~~~Ea~a~G~pvi~ 312 (390)
+..++.+++++++.. .. +-+.+ +++.. .|+++..+....-.-.+.+|+..|++|++
T Consensus 52 ~~a~~~a~~~g~~~~-~~--~~~~~---~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~ 114 (398)
T 3dty_A 52 IRGSAFGEQLGVDSE-RC--YADYL---SMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVVC 114 (398)
T ss_dssp HHHHHHHHHTTCCGG-GB--CSSHH---HHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCcc-ee--eCCHH---HHHhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 667788888886421 11 12333 56665 78877655332222346789999999998
No 206
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=30.72 E-value=1.3e+02 Score=26.17 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhh-cCCCEEEecC
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMF-CKRPVIAVNS 315 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~ 315 (390)
+.+..+.+.+++.|+ ..+.-..+... .+++.. +|++=.+| .+-....++++++ .|+|||.+.-
T Consensus 101 e~~~~L~~~~~~~Gi---~~~stpfD~~s-vd~l~~~~vd~~KIgS-~~~~N~pLL~~va~~gKPViLStG 166 (385)
T 1vli_A 101 EWILPLLDYCREKQV---IFLSTVCDEGS-ADLLQSTSPSAFKIAS-YEINHLPLLKYVARLNRPMIFSTA 166 (385)
T ss_dssp GGHHHHHHHHHHTTC---EEECBCCSHHH-HHHHHTTCCSCEEECG-GGTTCHHHHHHHHTTCSCEEEECT
T ss_pred HHHHHHHHHHHHcCC---cEEEccCCHHH-HHHHHhcCCCEEEECc-ccccCHHHHHHHHhcCCeEEEECC
Confidence 444788888888875 33444445444 455644 46665555 3444556777666 7999999763
No 207
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=30.68 E-value=1.5e+02 Score=24.57 Aligned_cols=85 Identities=11% Similarity=-0.001 Sum_probs=48.3
Q ss_pred HHHHHhcceEEeCCC-CCC----CCccHHhhhhcC--CCEEEecCCCcccc-ee------cCcceeeecC-CHHHHHHHH
Q psy12587 278 ISLFKFCHCIIYTPS-NEH----FGIVPIEAMFCK--RPVIAVNSGGPKES-VV------DGRTGFLCES-NEEAFAKAM 342 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~----~~~~~~Ea~a~G--~pvi~~~~~~~~e~-i~------~~~~g~~~~~-~~~~l~~~i 342 (390)
..-+++||+++.-.. .|+ |--.++++..-. .++|.... +...+ +. ..+.-++.++ +...+++.|
T Consensus 61 ~~~l~~Adlvv~~G~~lE~~~~~w~~k~~~~~~~~~~~~~v~~s~-gi~~~~~~~~~~~~~~dPHvWldp~~~~~~a~~I 139 (294)
T 3hh8_A 61 AEKTSNADVIFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSD-GIDVIYLEGASEKGKEDPHAWLNLENGIIYSKNI 139 (294)
T ss_dssp HHHHHHCSEEEECCTTSSCSTTSHHHHHHHHTTCCBTTTEEETTT-TSCCCBSTTCCSTTCBCCCGGGSHHHHHHHHHHH
T ss_pred HHHHHhCCEEEEcCCCccchHHHHHHHHHHhccccCCceEEEccC-CcccccCCCccCCCCCCCceeCCHHHHHHHHHHH
Confidence 578899999887653 565 555666665543 56665332 11110 00 0122345566 777777777
Q ss_pred HHHhc--CChhHHHHHHHHHHHHH
Q psy12587 343 KKIVD--NDGNIIQQFSQFGFNRF 364 (390)
Q Consensus 343 ~~l~~--~~~~~~~~~~~~~~~~~ 364 (390)
.+.|. +|+ ......+|+.++.
T Consensus 140 ~~~L~~~dP~-~a~~y~~N~~~~~ 162 (294)
T 3hh8_A 140 AKQLIAKDPK-NKETYEKNLKAYV 162 (294)
T ss_dssp HHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred HHHHHHhCcc-chHHHHHHHHHHH
Confidence 76654 666 5566666665554
No 208
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=30.54 E-value=1.4e+02 Score=25.59 Aligned_cols=63 Identities=17% Similarity=0.067 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhh-cCCCEEEecC
Q psy12587 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMF-CKRPVIAVNS 315 (390)
Q Consensus 248 ~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a-~G~pvi~~~~ 315 (390)
+.+..+.+.+++.|+ ..+.-..+...+ +++.. .|++=.+|. +-....++++++ .|+|||.+.-
T Consensus 91 e~~~~L~~~~~~~Gi---~~~st~~d~~sv-d~l~~~~v~~~KI~S~-~~~n~~LL~~va~~gkPviLstG 156 (349)
T 2wqp_A 91 EDEIKLKEYVESKGM---IFISTLFSRAAA-LRLQRMDIPAYKIGSG-ECNNYPLIKLVASFGKPIILSTG 156 (349)
T ss_dssp HHHHHHHHHHHHTTC---EEEEEECSHHHH-HHHHHHTCSCEEECGG-GTTCHHHHHHHHTTCSCEEEECT
T ss_pred HHHHHHHHHHHHhCC---eEEEeeCCHHHH-HHHHhcCCCEEEECcc-cccCHHHHHHHHhcCCeEEEECC
Confidence 455788888888876 334444555554 45533 577766663 344556777666 7999999763
No 209
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=30.32 E-value=77 Score=24.90 Aligned_cols=40 Identities=8% Similarity=-0.267 Sum_probs=21.9
Q ss_pred HHHHHHHHh-cceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 275 AAKISLFKF-CHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 275 ~e~~~~~~~-adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
.++.++++. .|+++.......-.-..-.+..+|+..|..-
T Consensus 131 ~dl~ell~~~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf 171 (211)
T 2dt5_A 131 DLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNF 171 (211)
T ss_dssp GGHHHHSTTTCCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HhHHHHHHcCCCEEEEeCCchhHHHHHHHHHHcCCCEEEEC
Confidence 345666654 6666654321111124456777899876543
No 210
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=30.25 E-value=23 Score=28.61 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=16.3
Q ss_pred CCccHHhhhhcCCCEEEecC
Q psy12587 296 FGIVPIEAMFCKRPVIAVNS 315 (390)
Q Consensus 296 ~~~~~~Ea~a~G~pvi~~~~ 315 (390)
-..+.+.|++.|.|||.+++
T Consensus 79 rt~K~~~ala~gipiV~~~W 98 (241)
T 2vxb_A 79 RKVKYLEALAFNIPCVHPQF 98 (241)
T ss_dssp CCHHHHHHHHHTCCEECTHH
T ss_pred CcHHHHHHHHcCCCEecHHH
Confidence 34578999999999999754
No 211
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=30.24 E-value=1.7e+02 Score=21.87 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=24.0
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHh---hhhcCCCEEEec
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIE---AMFCKRPVIAVN 314 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~E---a~a~G~pvi~~~ 314 (390)
.+.+..||++|.-.. .+.=+.+..| |.+.|+||++-.
T Consensus 76 ~~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 76 LTGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 467899998876311 1222234444 888999999974
No 212
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=30.05 E-value=1.3e+02 Score=20.57 Aligned_cols=109 Identities=10% Similarity=0.096 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCCC-CCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPSN-EHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~~-e~~~~~~~Ea~a-- 305 (390)
.++.++.+.+ .....+.......|. .+.. .-+..+....+. ..|++++-... +.-|..+++.+.
T Consensus 4 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (136)
T 1mvo_A 4 KKILVVDDEE-------SIVTLLQYNLERSGY--DVIT--ASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQ 72 (136)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEEE--ESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred CEEEEEECCH-------HHHHHHHHHHHHCCc--EEEE--ecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 4566666543 233556666666553 2332 233444445544 35777764332 223444554442
Q ss_pred -cCCCEEE-ecCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhcCCh
Q psy12587 306 -CKRPVIA-VNSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350 (390)
Q Consensus 306 -~G~pvi~-~~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~~ 350 (390)
..+|+|. +..... .+.+..|..+++..+ +.+++...+..++....
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 73 KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp TCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred CCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 4577776 333222 223456778899999 99999999999876544
No 213
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=29.95 E-value=32 Score=25.66 Aligned_cols=37 Identities=16% Similarity=-0.002 Sum_probs=24.3
Q ss_pred HHHHHhcceEEeCCC-CCCCCccHHh---hhhcCCCEEEec
Q psy12587 278 ISLFKFCHCIIYTPS-NEHFGIVPIE---AMFCKRPVIAVN 314 (390)
Q Consensus 278 ~~~~~~adv~v~ps~-~e~~~~~~~E---a~a~G~pvi~~~ 314 (390)
.+.+..||++|.-.. .+.=+.+.+| |.+.|+||++-.
T Consensus 73 ~~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~ 113 (157)
T 1f8y_A 73 LNGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVI 113 (157)
T ss_dssp HHHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEE
Confidence 467889999875432 1122334555 888999999964
No 214
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=29.79 E-value=1.9e+02 Score=22.11 Aligned_cols=108 Identities=11% Similarity=0.172 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec-CCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT-SPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g-~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a- 305 (390)
.++.++.+.+ .....+....+..+ .+...+ .-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 6 ~~ilivdd~~-------~~~~~l~~~L~~~~---~~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~ 75 (215)
T 1a04_A 6 ATILLIDDHP-------MLRTGVKQLISMAP---DITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLRE 75 (215)
T ss_dssp EEEEEECSCH-------HHHHHHHHHHTTCT---TEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCH-------HHHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 6677777543 22244444444332 233322 2334444455543 577776433 2334555555543
Q ss_pred --cCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 --CKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 --~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|.- .... ..+.+..|..+++..+ +++++..+|..++..
T Consensus 76 ~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 76 KSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp SCCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred hCCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 35677663 3222 2233456778999999 999999999998764
No 215
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=29.78 E-value=2.2e+02 Score=22.86 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=62.7
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh---cceEEeCCC-CCCCCccHHhhhh
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF---CHCIIYTPS-NEHFGIVPIEAMF 305 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~---adv~v~ps~-~e~~~~~~~Ea~a 305 (390)
..++.++-+.+ .....+....+..+. .|. ..-+..+..+.+.. .|++++--. .+.-|..+++.+.
T Consensus 124 ~~~ILivDD~~-------~~~~~l~~~L~~~~~--~v~--~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr 192 (259)
T 3luf_A 124 QIEVLVVDDSR-------TSRHRTMAQLRKQLL--QVH--EASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLR 192 (259)
T ss_dssp TCEEEEECSCH-------HHHHHHHHHHHTTTC--EEE--EESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHH
T ss_pred CCcEEEEeCCH-------HHHHHHHHHHHHcCc--EEE--EeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 37888887653 222444445544432 232 23445555666654 367776433 2334555555443
Q ss_pred -----cCCCEEE-ecCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 -----CKRPVIA-VNSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 -----~G~pvi~-~~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+|||+ |..... .+.+..|..+++..| +.+++...+.++++
T Consensus 193 ~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 193 ERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp HHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred hccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHH
Confidence 3577875 332222 233566888999999 99999999988765
No 216
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=29.52 E-value=86 Score=26.29 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+..++.+++++.+ . .-+.++ +-..+|+++..+......-.+.+|+..|++|++-.
T Consensus 42 ~~~~~~~~~~g~~----~--~~~~~~---l~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eK 96 (319)
T 1tlt_A 42 AKALPICESWRIP----Y--ADSLSS---LAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDK 96 (319)
T ss_dssp TTHHHHHHHHTCC----B--CSSHHH---HHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHcCCC----c--cCcHHH---hhcCCCEEEEeCCchhHHHHHHHHHHcCCeEEEeC
Confidence 3445556666643 1 122333 24678988876543333334667899999999853
No 217
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=29.36 E-value=1.4e+02 Score=22.90 Aligned_cols=52 Identities=12% Similarity=0.046 Sum_probs=29.5
Q ss_pred eEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcC
Q psy12587 195 IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLK 261 (390)
Q Consensus 195 ~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~ 261 (390)
++++..+... .+...+.++++.+++. ++++.++|-|...... + ++.+++..+
T Consensus 109 iiil~~~~~~--~~~~~~~~~a~~lk~~-------gi~v~~Ig~G~~~~~~-----~-l~~la~~~n 160 (192)
T 2x5n_A 109 IVAFVGSPIV--EDEKNLIRLAKRMKKN-------NVAIDIIHIGELQNES-----A-LQHFIDAAN 160 (192)
T ss_dssp EEEEECSCCS--SCHHHHHHHHHHHHHT-------TEEEEEEEESCC---C-----H-HHHHHHHHC
T ss_pred EEEEEECCCC--CCchhHHHHHHHHHHC-------CCEEEEEEeCCCCccH-----H-HHHHHHhcc
Confidence 3444445442 3456777888888776 4677777765542100 3 777776643
No 218
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=29.35 E-value=1.6e+02 Score=25.37 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=46.5
Q ss_pred CcEEEecC-CChH---HHHHHHHhcceEEeC-CCCCCCCcc--HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHH
Q psy12587 264 DNVLFLTS-PSDA---AKISLFKFCHCIIYT-PSNEHFGIV--PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEE 336 (390)
Q Consensus 264 ~~v~~~g~-~~~~---e~~~~~~~adv~v~p-s~~e~~~~~--~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~ 336 (390)
+.|.|.|. ++.. ...+....||++|+- +....+|.. +..|...|.++|.-+.....- +....+.+..+.+
T Consensus 183 PdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~---d~~adl~i~g~a~ 259 (355)
T 3pki_A 183 DTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKH---DRHADLRIHGYVD 259 (355)
T ss_dssp ECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTT---GGGCSEEECSCHH
T ss_pred CCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCC---CCccCEEEeCCHH
Confidence 56777776 5653 235677899987764 333333332 245777899988877543321 1223344444677
Q ss_pred HHHHHHHHHhc
Q psy12587 337 AFAKAMKKIVD 347 (390)
Q Consensus 337 ~l~~~i~~l~~ 347 (390)
++...+.+.+.
T Consensus 260 evl~~L~~~Lg 270 (355)
T 3pki_A 260 EVMTRLMEHLG 270 (355)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 77766665543
No 219
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=29.25 E-value=2e+02 Score=22.30 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=26.9
Q ss_pred HHHHHhcceEEeCCCCCCCCcc--HHhhhh------cCCCEEEecCCCc
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIV--PIEAMF------CKRPVIAVNSGGP 318 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~--~~Ea~a------~G~pvi~~~~~~~ 318 (390)
..+...||++|.-. -|+|+- ++|++. .++||+.-+..++
T Consensus 112 ~~m~~~sda~IalP--GG~GTldEl~e~lt~~qlg~~~kPvvlln~~gf 158 (199)
T 3qua_A 112 REMEHRSDAFIALP--GGIGTLEEFFEAWTAGYLGMHDKPLILLDPFGH 158 (199)
T ss_dssp HHHHHHCSEEEECS--CCHHHHHHHHHHHHHHHTTSCCCCEEEECTTST
T ss_pred HHHHHhcCccEEeC--CCccHHHHHHHHHHHHHhccCCCCEEEEcCCcc
Confidence 56678899877532 345543 677777 4899999886443
No 220
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=29.15 E-value=1.3e+02 Score=20.03 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=57.3
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCC-CCCCCccHHhhhh--c
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPS-NEHFGIVPIEAMF--C 306 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~-~e~~~~~~~Ea~a--~ 306 (390)
++.++.+.+ .....+....+..|. .+.. .-+..+....+. ..|++++-.. .+.-|..+++.+. .
T Consensus 3 ~ilivdd~~-------~~~~~l~~~l~~~~~--~v~~--~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 71 (121)
T 1zh2_A 3 NVLIVEDEQ-------AIRRFLRTALEGDGM--RVFE--AETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWS 71 (121)
T ss_dssp EEEEECSCH-------HHHHHHHHHHHTTTC--EEEE--ESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTC
T ss_pred EEEEEeCCH-------HHHHHHHHHHhcCCC--EEEE--eCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCC
Confidence 455665442 233556666665543 2332 223333333333 3677776332 2223445555553 3
Q ss_pred CCCEEEe-cCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 307 KRPVIAV-NSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 307 G~pvi~~-~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
.+|+|.. ..... .+.+..|..+++..+ +.+++...+..++.
T Consensus 72 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 72 AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 5777663 32222 233455778899999 99999999887653
No 221
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.15 E-value=1.4e+02 Score=20.58 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=40.0
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
+..|+|.|.-....+ ++++++++.+|- .+.+.++ +..|++|.-.. ..+.++-.|...|+|
T Consensus 25 G~~~v~TG~l~~~~R------~e~~~~i~~~Gg----kv~~sVS--------kkTd~LV~G~~--~g~sKl~KA~~lgI~ 84 (112)
T 2ebu_A 25 GLIFVITGVLESIER------DEAKSLIERYGG----KVTGNVS--------KKTNYLVMGRD--SGQSKSDKAAALGTK 84 (112)
T ss_dssp TCEEEECSCCSSSCH------HHHHHHHHHTTC----EECSSCC--------SSCCEEEECSS--CCSHHHHHHHHHTCE
T ss_pred CCEEEEeeeCCCCCH------HHHHHHHHHcCC----EEecccc--------CCeeEEEecCC--CChHHHHHHHHcCCe
Confidence 367788887643222 788888888763 2345554 34566666432 123677788888888
Q ss_pred EEEe
Q psy12587 310 VIAV 313 (390)
Q Consensus 310 vi~~ 313 (390)
||.-
T Consensus 85 IisE 88 (112)
T 2ebu_A 85 IIDE 88 (112)
T ss_dssp EEEH
T ss_pred EEeH
Confidence 8863
No 222
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=28.99 E-value=1.1e+02 Score=21.21 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CC--CCCccHHhhhh
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NE--HFGIVPIEAMF 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e--~~~~~~~Ea~a 305 (390)
.++.|+.+.+ .....+....++.|. .|.. .-+..+....+.. .|++++-.. .+ .-|..+++.+.
T Consensus 7 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~ 75 (136)
T 3kto_A 7 PIIYLVDHQK-------DARAALSKLLSPLDV--TIQC--FASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLV 75 (136)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHTTSSS--EEEE--ESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHH
T ss_pred CeEEEEcCCH-------HHHHHHHHHHHHCCc--EEEE--eCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHH
Confidence 5777877543 233556666665543 2332 2344444444433 466666433 23 33445554443
Q ss_pred ---cCCCEEEec-CCC---cccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 ---CKRPVIAVN-SGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 ---~G~pvi~~~-~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|.-. ... ..+.+..|..+++..+ +.+++..+|.+++..
T Consensus 76 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 76 KRGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp HTTCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred hCCCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 467887733 222 2334566778999999 999999999988754
No 223
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=28.89 E-value=44 Score=28.32 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=25.1
Q ss_pred HHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 278 ISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 278 ~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
.+++. ..|+++..+....-.-.+.+|+..|++|++-.
T Consensus 60 ~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EK 98 (329)
T 3evn_A 60 EDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEK 98 (329)
T ss_dssp HHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred HHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEcc
Confidence 46777 68888775543222234678999999999854
No 224
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=28.75 E-value=1.1e+02 Score=23.14 Aligned_cols=105 Identities=6% Similarity=0.008 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCC-CccHHhhhh---c
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHF-GIVPIEAMF---C 306 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~-~~~~~Ea~a---~ 306 (390)
.++.|+.+.+. ....+.......|. .+..... ..+. +-...|++++-....+. |. +.+.+. .
T Consensus 13 ~~iLivdd~~~-------~~~~l~~~L~~~g~--~v~~~~~--~~~a--l~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~ 78 (196)
T 1qo0_D 13 LQVLVLNPPGE-------VSDALVLQLIRIGC--SVRQCWP--PPEA--FDVPVDVVFTSIFQNRHHDE-IAALLAAGTP 78 (196)
T ss_dssp CEEEEESCTTH-------HHHHHHHHHHHHTC--EEEEECS--CCSS--CSSCCSEEEEECCSSTHHHH-HHHHHHHSCT
T ss_pred CeEEEEcCChh-------HHHHHHHHHHHcCC--eEEEecC--chhh--CCCCCCEEEEeCCCCccchH-HHHHHhccCC
Confidence 56777765542 22445555555543 2222211 1110 11246777664332222 33 444443 4
Q ss_pred CCCEEEe-cCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 307 KRPVIAV-NSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 307 G~pvi~~-~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
.+|+|.- ..... .+.+..|..+++..| +.+++..++..++...
T Consensus 79 ~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 79 RTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp TCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 6787763 33222 233455778899999 9999999998887643
No 225
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=28.69 E-value=1.1e+02 Score=27.59 Aligned_cols=81 Identities=10% Similarity=0.067 Sum_probs=49.4
Q ss_pred CCcEEEecC-CChHH---HHHHHHhcceEEeC-CCCCCCCc-cHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHH
Q psy12587 263 SDNVLFLTS-PSDAA---KISLFKFCHCIIYT-PSNEHFGI-VPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEE 336 (390)
Q Consensus 263 ~~~v~~~g~-~~~~e---~~~~~~~adv~v~p-s~~e~~~~-~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~ 336 (390)
.+.|.|.|. +|... ..+.+..||++|+- +....+|. .+.++...|+|+|.-+.+..+. ...-+.+..+.+
T Consensus 369 RPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~----~~~Dl~l~G~cd 444 (492)
T 4iao_A 369 KPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH----AEFDLSLLGYCD 444 (492)
T ss_dssp EESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTT----SCCSEEEESCHH
T ss_pred CCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCC----CCccEEEeCCHH
Confidence 456888887 66532 33566789987663 33333443 3456666788988877654432 112233433788
Q ss_pred HHHHHHHHHhc
Q psy12587 337 AFAKAMKKIVD 347 (390)
Q Consensus 337 ~l~~~i~~l~~ 347 (390)
+++..+.+.+.
T Consensus 445 evv~~L~~~LG 455 (492)
T 4iao_A 445 DIAAMVAQKCG 455 (492)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 88888877764
No 226
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=28.53 E-value=97 Score=24.76 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.|+.+.+ .....+....+..+. .|.. .-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 38 ~~ILivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~ 106 (249)
T 3q9s_A 38 QRILVIEDDH-------DIANVLRMDLTDAGY--VVDH--ADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKN 106 (249)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHTTTC--EEEE--ESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTT
T ss_pred CEEEEEECCH-------HHHHHHHHHHHHCCC--EEEE--eCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcC
Confidence 5788887653 233556666665542 2322 2344454555543 577776433 2333445555443
Q ss_pred cCCCEEEecCCC----cccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 CKRPVIAVNSGG----PKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 ~G~pvi~~~~~~----~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|||.-.... ..+.+..|..+++..+ +.+++..+|..++..
T Consensus 107 ~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 107 SALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 357877743222 2233456778999999 999999999988763
No 227
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=28.17 E-value=1.5e+02 Score=23.95 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=42.8
Q ss_pred CcEEEecC-CChH---HHHHHHHhcceEEeCC-CCCCCCccHH--hhhhcCCCEEEecCCCcccceecCcceeeecCCHH
Q psy12587 264 DNVLFLTS-PSDA---AKISLFKFCHCIIYTP-SNEHFGIVPI--EAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEE 336 (390)
Q Consensus 264 ~~v~~~g~-~~~~---e~~~~~~~adv~v~ps-~~e~~~~~~~--Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~ 336 (390)
++|.+.|. +++. ...+.+.+||+++.-. ....+|..-+ .|...|.|+|.-+.+...- +....+.+..+..
T Consensus 160 P~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~---d~~~~~~i~~~~~ 236 (253)
T 1ma3_A 160 PRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMA---DPIFDVKIIGKAG 236 (253)
T ss_dssp EEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTT---GGGCSEEEESCHH
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCC---CCceeEEEeCCHH
Confidence 56767766 5543 3456778899877643 2233444322 4556699998877654331 1123344544655
Q ss_pred HHHHHHH
Q psy12587 337 AFAKAMK 343 (390)
Q Consensus 337 ~l~~~i~ 343 (390)
+....+.
T Consensus 237 ~~l~~l~ 243 (253)
T 1ma3_A 237 EVLPKIV 243 (253)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 228
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=28.07 E-value=1.8e+02 Score=24.11 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc----c------eEEeCCCCCCCCcc---HHhhhhcCC
Q psy12587 245 ENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC----H------CIIYTPSNEHFGIV---PIEAMFCKR 308 (390)
Q Consensus 245 ~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a----d------v~v~ps~~e~~~~~---~~Ea~a~G~ 308 (390)
.+.+|..++-+.+.+.|. +.|.+ .|...+.++.++++.. . +-++. ...+|+. .+.|+.+|+
T Consensus 147 ~~~~~~~~~~~~~~~~G~-~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~--Hnd~Gla~AN~laA~~aGa 223 (293)
T 3ewb_X 147 SDRAFLIEAVQTAIDAGA-TVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHC--HDDLGMATANALAAIENGA 223 (293)
T ss_dssp SCHHHHHHHHHHHHHTTC-CEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEEC--BCTTSCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCC-CEEEecCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEEe--CCCcChHHHHHHHHHHhCC
Confidence 345777777777778885 55666 4566776665555432 1 34443 3344553 678999999
Q ss_pred CEEEecCCCcccceecCcceeeecCCHHHHHHHHHH
Q psy12587 309 PVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKK 344 (390)
Q Consensus 309 pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~ 344 (390)
-.|-+..+|+.+- +|-. +.|+++..+..
T Consensus 224 ~~vd~sv~GlGer-----aGN~---~~E~vv~~L~~ 251 (293)
T 3ewb_X 224 RRVEGTINGIGER-----AGNT---ALEEVAVALHI 251 (293)
T ss_dssp CEEEEBGGGCCTT-----TCBC---BHHHHHHHHHH
T ss_pred CEEEeeccccccc-----cccH---hHHHHHHHHHh
Confidence 9999999888872 2211 56777777764
No 229
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=27.90 E-value=1.4e+02 Score=20.22 Aligned_cols=95 Identities=12% Similarity=0.129 Sum_probs=52.5
Q ss_pred EEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhh--hcCCCE
Q psy12587 233 LVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAM--FCKRPV 310 (390)
Q Consensus 233 l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~--a~G~pv 310 (390)
++++|.|-... -....+++.+++.|++-.|.-.+. .++...+..+|+++........ ..-++.. -.++||
T Consensus 8 lvvC~~G~~TS----ll~~kl~~~~~~~gi~~~i~~~~~---~~~~~~~~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~pv 79 (109)
T 2l2q_A 8 LLVCGAGMSTS----MLVQRIEKYAKSKNINATIEAIAE---TRLSEVVDRFDVVLLAPQSRFN-KKRLEEITKPKGIPI 79 (109)
T ss_dssp EEESSSSCSSC----HHHHHHHHHHHHHTCSEEEEEECS---TTHHHHTTTCSEEEECSCCSSH-HHHHHHHHHHHTCCE
T ss_pred EEECCChHhHH----HHHHHHHHHHHHCCCCeEEEEecH---HHHHhhcCCCCEEEECCccHHH-HHHHHHHhcccCCCE
Confidence 55666665431 334688888888887534443333 3334567899998876532111 2223332 258999
Q ss_pred EEecCCCcccceecCcceeeecCCHHHHHHHHHHHhc
Q psy12587 311 IAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD 347 (390)
Q Consensus 311 i~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~ 347 (390)
+.-+.-.+ | .. |.+.+.+.+.+++.
T Consensus 80 ~~I~~~~y---------~--~~-d~~~vl~~i~~~l~ 104 (109)
T 2l2q_A 80 EIINTIDY---------G--TM-NGEKVLQLAINAFN 104 (109)
T ss_dssp EECCHHHH---------H--HT-CHHHHHHHHHHHHH
T ss_pred EEEChHHh---------c--cC-CHHHHHHHHHHHHh
Confidence 87542111 1 01 56666666666553
No 230
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=27.73 E-value=1.2e+02 Score=20.92 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCC
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS 292 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~ 292 (390)
-++++|.|-.. ..-....+++.+++.|++-.|.-.+.-+ +...+..+|+++....
T Consensus 24 IlvvC~sG~gT---S~ll~~kl~~~~~~~gi~~~V~~~~~~~---~~~~~~~~DlIist~~ 78 (113)
T 1tvm_A 24 IIVACGGAVAT---STMAAEEIKELCQSHNIPVELIQCRVNE---IETYMDGVHLICTTAR 78 (113)
T ss_dssp EEEESCSCSSH---HHHHHHHHHHHHHHTTCCEEEEEECTTT---TTTSTTSCSEEEESSC
T ss_pred EEEECCCCHHH---HHHHHHHHHHHHHHcCCeEEEEEecHHH---HhhccCCCCEEEECCc
Confidence 35566666542 1112367788888888753344433222 2234568999887654
No 231
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=27.60 E-value=1.6e+02 Score=23.85 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhc
Q psy12587 213 IYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC 284 (390)
Q Consensus 213 l~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~a 284 (390)
...++++++++. +++.++++|+| .+-++.++.++.| |..--++.++..+..+-
T Consensus 217 esCFerI~~RFG----~k~~yvvIGDG-----------~eEe~AAk~~n~P----FwrI~~h~Dl~~l~~al 269 (274)
T 3geb_A 217 ESCFERIMQRFG----RKAVYVVIGDG-----------VEEEQGAKKHNMP----FWRISCHADLEALRHAL 269 (274)
T ss_dssp HHHHHHHHHHHC----TTSEEEEEESS-----------HHHHHHHHHTTCC----EEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCceEEEECCC-----------HHHHHHHHHcCCC----eEEeecCccHHHHHHhh
Confidence 345566666653 26999999999 5556677777763 33334556655555443
No 232
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=27.32 E-value=2.6e+02 Score=23.04 Aligned_cols=126 Identities=9% Similarity=-0.010 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEE--cCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHH
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVA--GGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFK 282 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~--G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~ 282 (390)
+++.+.++++..++.+.. +...+. ++.+...+.+.++..++-+.+.+.|. +.+.+ .|...+.++.++++
T Consensus 118 ~~~~~~~~v~~a~~~G~~-----V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~-d~i~l~Dt~G~~~P~~~~~lv~ 191 (295)
T 1ydn_A 118 SIERLSPVIGAAINDGLA-----IRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGC-HEVSLGDTIGRGTPDTVAAMLD 191 (295)
T ss_dssp HHHHHHHHHHHHHHTTCE-----EEEEEECSSEETTTEECCHHHHHHHHHHHHHHTC-SEEEEEETTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCe-----EEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCC-CEEEecCCCCCcCHHHHHHHHH
Confidence 455555666666666543 543332 32233334455666777777778886 55655 46666666655555
Q ss_pred h----cc---eEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCccc--ceecCcceeeecCCHHHHHHHHHHH
Q psy12587 283 F----CH---CIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKE--SVVDGRTGFLCESNEEAFAKAMKKI 345 (390)
Q Consensus 283 ~----ad---v~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e--~i~~~~~g~~~~~~~~~l~~~i~~l 345 (390)
. .+ +.++. ...+|+. .+.|+.+|.-.|-+..+|+.+ +. .+..|-. +.++++..+...
T Consensus 192 ~l~~~~~~~~l~~H~--Hn~~Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~a-~g~~GN~---~~e~lv~~l~~~ 260 (295)
T 1ydn_A 192 AVLAIAPAHSLAGHY--HDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPFA-PGAKGNV---DTVAVVEMLHEM 260 (295)
T ss_dssp HHHTTSCGGGEEEEE--BCTTSCHHHHHHHHHHHTCCEEEEBTTCCSCBTTB-TTSCCBC---BHHHHHHHHHHT
T ss_pred HHHHhCCCCeEEEEE--CCCcchHHHHHHHHHHhCCCEEEeccccCCCCCCC-CCCcCCh---hHHHHHHHHHhc
Confidence 4 22 34443 2345554 578888999999988877755 22 1112211 668888877654
No 233
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.14 E-value=1.6e+02 Score=24.10 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=33.3
Q ss_pred CeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHc
Q psy12587 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKL 260 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~ 260 (390)
..+|++++.-.. -.-..++++++++++. ++.+.++|-|...... +.++.+++..
T Consensus 108 ~rIIlf~ds~~~-~~~~~l~~lak~lkk~-------gI~v~vIgFG~~~~n~-----~kLe~l~~~~ 161 (268)
T 4b4t_W 108 QRIVAFVCSPIS-DSRDELIRLAKTLKKN-------NVAVDIINFGEIEQNT-----ELLDEFIAAV 161 (268)
T ss_dssp EEEEEEECSCCS-SCHHHHHHHHHHHHHH-------TEEEEEEEESSCCSSC-----CHHHHHHHHH
T ss_pred eEEEEEECCCCC-CCHHHHHHHHHHHHHc-------CCEEEEEEeCCCccch-----HHHHHHHHHh
Confidence 345666655332 3567788888988887 4777777765432110 5666666654
No 234
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=26.83 E-value=2.3e+02 Score=22.20 Aligned_cols=14 Identities=7% Similarity=-0.142 Sum_probs=9.1
Q ss_pred cHHhhhhcCCCEEE
Q psy12587 299 VPIEAMFCKRPVIA 312 (390)
Q Consensus 299 ~~~Ea~a~G~pvi~ 312 (390)
.+..|+..|....+
T Consensus 121 pi~~ai~~G~~~tG 134 (216)
T 2ywr_A 121 AQKQAVEFGVKFSG 134 (216)
T ss_dssp HHHHHHHHTCSEEE
T ss_pred HHHHHHHcCCCeEE
Confidence 45567777776655
No 235
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=26.80 E-value=2.2e+02 Score=24.76 Aligned_cols=46 Identities=17% Similarity=0.052 Sum_probs=29.0
Q ss_pred HHHHHHHHhcceEEeCCCCCC------CCccHHhhhhcCCCEEE--ecCCCccc
Q psy12587 275 AAKISLFKFCHCIIYTPSNEH------FGIVPIEAMFCKRPVIA--VNSGGPKE 320 (390)
Q Consensus 275 ~e~~~~~~~adv~v~ps~~e~------~~~~~~Ea~a~G~pvi~--~~~~~~~e 320 (390)
..+.+.++.||+++......+ +.-.+++.|.-|.-+|- .+.||.-|
T Consensus 257 ~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e 310 (381)
T 3p2y_A 257 QALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE 310 (381)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred HHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence 456788999999987432221 22346777777776665 34566655
No 236
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=26.74 E-value=78 Score=26.94 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=40.6
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
++++-+-+... +..++.++++++. +... -+. .+++.. .|+++..+......-.+.+|+..|+
T Consensus 28 ~~l~av~d~~~---------~~~~~~~~~~g~~--~~~~--~~~---~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk 91 (344)
T 3mz0_A 28 AEIVAVTDVNQ---------EAAQKVVEQYQLN--ATVY--PND---DSLLADENVDAVLVTSWGPAHESSVLKAIKAQK 91 (344)
T ss_dssp EEEEEEECSSH---------HHHHHHHHHTTCC--CEEE--SSH---HHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred cEEEEEEcCCH---------HHHHHHHHHhCCC--Ceee--CCH---HHHhcCCCCCEEEECCCchhHHHHHHHHHHCCC
Confidence 77764443332 6677778887642 2221 233 356665 8888776543322334678999999
Q ss_pred CEEEec
Q psy12587 309 PVIAVN 314 (390)
Q Consensus 309 pvi~~~ 314 (390)
+|++-.
T Consensus 92 ~vl~EK 97 (344)
T 3mz0_A 92 YVFCEK 97 (344)
T ss_dssp EEEECS
T ss_pred cEEEcC
Confidence 999843
No 237
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=26.57 E-value=1.9e+02 Score=21.09 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=26.1
Q ss_pred ChHHHHHHHH--hcceEEeCCCCC-CC----CccHHhhh--hcCCCEEEecCCCccc
Q psy12587 273 SDAAKISLFK--FCHCIIYTPSNE-HF----GIVPIEAM--FCKRPVIAVNSGGPKE 320 (390)
Q Consensus 273 ~~~e~~~~~~--~adv~v~ps~~e-~~----~~~~~Ea~--a~G~pvi~~~~~~~~e 320 (390)
+.+++.++-. .+|++|+.+... ++ -.++.+.+ .+.+||+.-+...-.+
T Consensus 105 ~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~~~~~~ 161 (170)
T 2dum_A 105 PWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEVDENE 161 (170)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECCCCCC-
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEccCCccc
Confidence 3445555555 678887766522 11 12344433 3679999876544443
No 238
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=26.43 E-value=2.4e+02 Score=22.36 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=21.5
Q ss_pred cHHhhhhcCCCEEEecCC------CcccceecCcceeeec-C-CHHHHHHHHHHH
Q psy12587 299 VPIEAMFCKRPVIAVNSG------GPKESVVDGRTGFLCE-S-NEEAFAKAMKKI 345 (390)
Q Consensus 299 ~~~Ea~a~G~pvi~~~~~------~~~e~i~~~~~g~~~~-~-~~~~l~~~i~~l 345 (390)
.+..|+..|........- ...+++... -+-+. . +.+++.+.+..+
T Consensus 142 pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~--~v~I~~~dt~~~L~~rl~~~ 194 (229)
T 3auf_A 142 AQRQALEHGVKVAGCTVHFVTAGVDEGPIILQA--AVPVLEGDTVEDLRRRILAE 194 (229)
T ss_dssp HHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEE--EEECCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEEECCCCcCCCEEEEE--EEecCCCCCHHHHHHHHHHH
Confidence 455677777665543221 223333221 12222 2 677777666544
No 239
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} SCOP: b.55.1.0 PDB: 3dxd_A 3dxc_A
Probab=26.07 E-value=1.2e+02 Score=21.94 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=31.6
Q ss_pred CCeEEEEeeccc--ccCCHHHHHHHHHHHHhhcccccccceEEEEEcCC
Q psy12587 193 EDIVFLSINRYE--RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGY 239 (390)
Q Consensus 193 ~~~~i~~~g~~~--~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~ 239 (390)
+.+.+-|.|... ..||.+.+-+|++++........+..+.+.|.+.+
T Consensus 8 ~~F~vkYLGsv~V~~p~G~~Vl~~Ai~ki~~~~~~~~~~~v~l~Vs~~g 56 (140)
T 3dxe_A 8 QKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPAT 56 (140)
T ss_dssp --CEEEEEEEEEESCSCCHHHHHHHHHHHHHTCCGGGCEEEEEEECSSE
T ss_pred heEeeeecceEEECCCCcHHHHHHHHHHHHhcCCcCCCceEEEEEcCCE
Confidence 567788899874 56899999999999977543212234666666544
No 240
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=26.00 E-value=2.1e+02 Score=23.00 Aligned_cols=78 Identities=9% Similarity=0.065 Sum_probs=42.2
Q ss_pred CcEEEecC-CChH---HHHHHHHhcceEEeC-CCCCCCCcc--HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHH
Q psy12587 264 DNVLFLTS-PSDA---AKISLFKFCHCIIYT-PSNEHFGIV--PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEE 336 (390)
Q Consensus 264 ~~v~~~g~-~~~~---e~~~~~~~adv~v~p-s~~e~~~~~--~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~ 336 (390)
++|.+.|. +++. +..+.+++||+++.- +....+|.. +..|...|.|+|.-+.....- +....+.+..+..
T Consensus 154 P~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~---d~~~~~~i~~~~~ 230 (249)
T 1m2k_A 154 PGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPL---TPIADYSLRGKAG 230 (249)
T ss_dssp EEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTT---GGGCSEEECSCHH
T ss_pred CeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCC---CcceeEEEeCCHH
Confidence 45555554 4432 235677789987764 322334443 244556799999877654331 1223344544666
Q ss_pred HHHHHHHH
Q psy12587 337 AFAKAMKK 344 (390)
Q Consensus 337 ~l~~~i~~ 344 (390)
+....+.+
T Consensus 231 ~~l~~l~~ 238 (249)
T 1m2k_A 231 EVMDELVR 238 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555543
No 241
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=25.86 E-value=2.2e+02 Score=24.05 Aligned_cols=81 Identities=14% Similarity=0.027 Sum_probs=46.5
Q ss_pred CcEEEecC-CChH---HHHHHHHhcceEEeC-CCCCCCCcc--HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHH
Q psy12587 264 DNVLFLTS-PSDA---AKISLFKFCHCIIYT-PSNEHFGIV--PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEE 336 (390)
Q Consensus 264 ~~v~~~g~-~~~~---e~~~~~~~adv~v~p-s~~e~~~~~--~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~ 336 (390)
+.|.|.|. ++.. ...+.+..||++|.- +....+|.. +..|...|.++|.-+.....- +....+.+..+.+
T Consensus 183 PdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~---d~~adl~i~g~~~ 259 (318)
T 3k35_A 183 DTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKH---DRHADLRIHGYVD 259 (318)
T ss_dssp ECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTT---GGGCSEEECSCHH
T ss_pred CCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCC---CCcccEEEeCCHH
Confidence 56777776 5543 235667889987664 333334432 346777899988877543321 1223344444677
Q ss_pred HHHHHHHHHhc
Q psy12587 337 AFAKAMKKIVD 347 (390)
Q Consensus 337 ~l~~~i~~l~~ 347 (390)
++...+.+.+.
T Consensus 260 evl~~L~~~Lg 270 (318)
T 3k35_A 260 EVMTRLMKHLG 270 (318)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77666665543
No 242
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=25.81 E-value=78 Score=28.14 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCC-cEEEecCCChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 251 KELGVLVKKLKLSD-NVLFLTSPSDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 251 ~~~~~~~~~~~l~~-~v~~~g~~~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+..++.+++++.+. .+.. +-+.+ +++. ..|+++..+......-.+.+|+..|++|++-.
T Consensus 120 ~~~~~~a~~~g~~~~~~~~--~~~~~---~ll~~~~vD~V~iatp~~~h~~~~~~al~aGk~Vl~EK 181 (433)
T 1h6d_A 120 EKAKIVAAEYGVDPRKIYD--YSNFD---KIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEK 181 (433)
T ss_dssp HHHHHHHHHTTCCGGGEEC--SSSGG---GGGGCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred HHHHHHHHHhCCCcccccc--cCCHH---HHhcCCCCCEEEEcCCchhHHHHHHHHHHCCCcEEEcC
Confidence 56677777777632 1222 22333 4565 68888776543333335678999999999843
No 243
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=25.52 E-value=3e+02 Score=23.14 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=57.1
Q ss_pred CeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC
Q psy12587 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS 273 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~ 273 (390)
.-+|+..|+- ..++..+....+++. ++++++.-+.|.. .+ ..+-....+.|++ +.+ ++
T Consensus 122 g~~ILTh~~S------~tv~~~l~~A~~~gk-----~~~V~v~EsrP~~--qG----~~la~~L~~~gI~--vtl---i~ 179 (315)
T 3ecs_A 122 GATILTHAYS------RVVLRVLEAAVAAKK-----RFSVYVTESQPDL--SG----KKMAKALCHLNVP--VTV---VL 179 (315)
T ss_dssp TEEEEECSCC------HHHHHHHHHHHTTTC-----CEEEEEECCTTTT--HH----HHHHHHHHTTTCC--EEE---EC
T ss_pred CCEEEEcCCc------HHHHHHHHHHHHcCC-----eEEEEEecCCCcc--hH----HHHHHHHHHcCCC--EEE---Ee
Confidence 3455665543 366666666655544 4888777665542 11 2344444455663 333 35
Q ss_pred hHHHHHHHHhcceEEeCCC--CC-C-----CCc--cHHhhhhcCCCEEEe
Q psy12587 274 DAAKISLFKFCHCIIYTPS--NE-H-----FGI--VPIEAMFCKRPVIAV 313 (390)
Q Consensus 274 ~~e~~~~~~~adv~v~ps~--~e-~-----~~~--~~~Ea~a~G~pvi~~ 313 (390)
+..+..+|+..|.+++... .. | -|. ..+=|-.+|+|+++.
T Consensus 180 Dsa~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~ 229 (315)
T 3ecs_A 180 DAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVV 229 (315)
T ss_dssp GGGHHHHGGGCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred hhHHHHHHHhCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEE
Confidence 6667889999999888654 12 1 122 234477789999873
No 244
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=25.47 E-value=1.7e+02 Score=23.88 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=43.9
Q ss_pred CcEEEecCCChHHHHHHH-HhcceEEeCCCCCCCCccHHhhhhcCCCEEEecC------CCcccceecCcceeeecC-CH
Q psy12587 264 DNVLFLTSPSDAAKISLF-KFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS------GGPKESVVDGRTGFLCES-NE 335 (390)
Q Consensus 264 ~~v~~~g~~~~~e~~~~~-~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~~------~~~~e~i~~~~~g~~~~~-~~ 335 (390)
+.|.+...++..++..+= ..+. .++.......+-+.+=|-++|+|.|+.-. ..-..++-++..|.++.. +.
T Consensus 155 ~~ILVa~~l~Ps~~~~l~~~~~~-givt~~Gg~tSH~AIlAR~lgIPavvg~~~~~~~~~~G~~v~vDg~~G~v~~~p~~ 233 (258)
T 1zym_A 155 EVILVAADLTPSETAQLNLKKVL-GFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTN 233 (258)
T ss_dssp CEEEECSCCCHHHHHHSCGGGEE-EEECSCCCSSSHHHHHHHHHTCCEECCCSCHHHHCCTTCEEEECCSSCCEEESCCH
T ss_pred CeEEEECCCCHHHHHhhchhhcE-EEEEcCCCcccHHHHHHHHcCCCEEEechhHHHhCCCCCEEEEECCCCeEEECcCH
Confidence 456666667777654431 2333 33333333334456669999999998432 122344557888888654 66
Q ss_pred HHHHH
Q psy12587 336 EAFAK 340 (390)
Q Consensus 336 ~~l~~ 340 (390)
+.+.+
T Consensus 234 ~~~~~ 238 (258)
T 1zym_A 234 EVIDK 238 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 245
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=25.18 E-value=1.3e+02 Score=25.67 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHH--HhcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLF--KFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~--~~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+..++.+++++++. +-+. .+++ ...|+++..+....-.-.+.+|+..|++|++-.
T Consensus 41 ~~~~~~~~~~g~~~------~~~~---~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EK 97 (354)
T 3db2_A 41 DKREKFGKRYNCAG------DATM---EALLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEK 97 (354)
T ss_dssp HHHHHHHHHHTCCC------CSSH---HHHHHCSSCCEEEECSCTTSHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHcCCCC------cCCH---HHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCEEEEcc
Confidence 56677777776531 2233 3567 457887775543333334678999999999854
No 246
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.47 E-value=2.8e+02 Score=22.38 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=27.0
Q ss_pred cCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHHhcCChhHHHHH
Q psy12587 306 CKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQF 356 (390)
Q Consensus 306 ~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~ 356 (390)
.++||++.......++...-......+ |..+..+.+.+++.... .++++
T Consensus 203 ~~~~v~vGG~~~~~~~~~~igad~~~~-da~~av~~~~~l~~~~~-~~~~~ 251 (258)
T 2i2x_B 203 IKIPFACGGGAVNQDFVSQFALGVYGE-EAADAPKIADAIIAGTT-DVTEL 251 (258)
T ss_dssp CCCCEEEESTTCCHHHHHTSTTEEECS-STTHHHHHHHHHHTTCC-CHHHH
T ss_pred CCCcEEEECccCCHHHHHHcCCeEEEC-CHHHHHHHHHHHHcchh-hHHHH
Confidence 347777765444444432211222223 77788888888876654 44443
No 247
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=24.44 E-value=1.7e+02 Score=19.84 Aligned_cols=108 Identities=9% Similarity=0.127 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.++.+.+ .....+....++.|. .+.. .-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 8 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 76 (130)
T 3eod_A 8 KQILIVEDEQ-------VFRSLLDSWFSSLGA--TTVL--AADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNR 76 (130)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEEE--ESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHT
T ss_pred CeEEEEeCCH-------HHHHHHHHHHHhCCc--eEEE--eCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 5777777543 333566777777653 2333 3345555566644 567776433 2334555555443
Q ss_pred -cCCCEEEec-CCCc---ccceecCcceeeecC--CHHHHHHHHHHHhcCC
Q psy12587 306 -CKRPVIAVN-SGGP---KESVVDGRTGFLCES--NEEAFAKAMKKIVDND 349 (390)
Q Consensus 306 -~G~pvi~~~-~~~~---~e~i~~~~~g~~~~~--~~~~l~~~i~~l~~~~ 349 (390)
..+|+|... .... .+.+..|..+++..+ +.+.+.+.+..++...
T Consensus 77 ~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 77 GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 357777633 2222 334456778888877 6889999999887643
No 248
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=24.18 E-value=2.7e+02 Score=22.12 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=29.3
Q ss_pred cCCCEEEecCCCc----ccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 CKRPVIAVNSGGP----KESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 ~G~pvi~~~~~~~----~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+|||+...... .+.+..|..+++..+ +.+++.++|.+++.
T Consensus 200 ~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 200 LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 4688887432222 233456778899999 99999999988764
No 249
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=24.04 E-value=1.3e+02 Score=25.98 Aligned_cols=55 Identities=7% Similarity=0.018 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCCCCCCccHHhhhhcCCCEEEe
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~ 313 (390)
+..++.+++++.+. + +-+. .++++. .|+++..+....-.-.+.+|+..|++|++=
T Consensus 57 ~~a~~~a~~~~~~~-~----~~~~---~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~E 113 (383)
T 3oqb_A 57 EKVEALAKRFNIAR-W----TTDL---DAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCE 113 (383)
T ss_dssp HHHHHHHHHTTCCC-E----ESCH---HHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHhCCCc-c----cCCH---HHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEc
Confidence 77788888887631 1 1233 356665 677766554333333567899999999973
No 250
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=24.01 E-value=85 Score=27.59 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=44.8
Q ss_pred cceEEeCCCCCCCC------ccHHhhhhcCCCEEEecCCCccc------ceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 284 CHCIIYTPSNEHFG------IVPIEAMFCKRPVIAVNSGGPKE------SVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 284 adv~v~ps~~e~~~------~~~~Ea~a~G~pvi~~~~~~~~e------~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
-|+++.|+..+-.| ..+.+.+....|+|..+-.+..+ +-+.|..|++-.. +++++++.|.++-.
T Consensus 13 ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~Vs~~~lA~Ava~aGGlGvi~~~~~~e~~~~~i~~vk~ 89 (400)
T 3ffs_A 13 EDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQVNEVLKVKN 89 (400)
T ss_dssp GGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTTTCSSHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHHC
T ss_pred eeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCCcCcHHHHHHHHHCCCEEEeCCCCCHHHHHHHHHHHHh
Confidence 46888887654332 33567888999999988654432 2345777877666 99999999977643
No 251
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=23.99 E-value=2.2e+02 Score=24.03 Aligned_cols=100 Identities=8% Similarity=0.029 Sum_probs=53.7
Q ss_pred CCcEEEecC-CChHH---HHHHHHhcceEEeCC-CCCCCCcc-HHhhhhcCCCEEEecCCCc--ccce------------
Q psy12587 263 SDNVLFLTS-PSDAA---KISLFKFCHCIIYTP-SNEHFGIV-PIEAMFCKRPVIAVNSGGP--KESV------------ 322 (390)
Q Consensus 263 ~~~v~~~g~-~~~~e---~~~~~~~adv~v~ps-~~e~~~~~-~~Ea~a~G~pvi~~~~~~~--~e~i------------ 322 (390)
.++|.+.|. +++.. ..+.+..||++|.-. ....+|.. +.+....+.|+|.-+.+.. .+.+
T Consensus 196 rP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~ 275 (323)
T 1j8f_A 196 KPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMD 275 (323)
T ss_dssp EEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCC
T ss_pred CCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCccccccccccccccc
Confidence 356777776 56533 345667899877642 22333332 3444444567765444322 1210
Q ss_pred ---ecCcceeeecCCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q psy12587 323 ---VDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNR 363 (390)
Q Consensus 323 ---~~~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 363 (390)
.+....+.+..+.++....+.+.+.-.+ ..+.+....++.
T Consensus 276 ~~~~~~~~d~~i~gd~~~~l~~L~~~lgw~~-~l~~l~~~~~~~ 318 (323)
T 1j8f_A 276 FDSKKAYRDVAWLGECDQGCLALAELLGWKK-ELEDLVRREHAS 318 (323)
T ss_dssp SSSTTCCSEEEEESCHHHHHHHHHHHTTCHH-HHHHHHHHHHHH
T ss_pred ccccccceeEEEeCCHHHHHHHHHHHcCCch-HHHHHHHhhhhh
Confidence 0011234454488888888877776555 666666555444
No 252
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=23.89 E-value=1.3e+02 Score=23.40 Aligned_cols=107 Identities=10% Similarity=0.177 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.++.+.+ .....+....+..+. .|. ..-+..+....+. ..|++++-.. .+.-|..+++.+.
T Consensus 5 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~--~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~ 73 (230)
T 2oqr_A 5 TSVLIVEDEE-------SLADPLAFLLRKEGF--EAT--VVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRAR 73 (230)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEE--EECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred CeEEEEeCCH-------HHHHHHHHHHHHCCC--EEE--EECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcC
Confidence 4566666543 333566666666553 233 2234455455554 3577776433 2333445554443
Q ss_pred cCCCEEEecC-CC---cccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 306 CKRPVIAVNS-GG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 306 ~G~pvi~~~~-~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
..+|+|.-.. .. ..+.+..|..+++..+ +.+++..+|..++..
T Consensus 74 ~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 74 SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 4788877332 21 2233455777889888 999999999988764
No 253
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=23.85 E-value=1.9e+02 Score=21.93 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCcEEEecC-CChHHHHHHHHhcc---eEEeCCCCC----CCCccHHhhhhcCCCEEEe
Q psy12587 251 KELGVLVKKLKLSDNVLFLTS-PSDAAKISLFKFCH---CIIYTPSNE----HFGIVPIEAMFCKRPVIAV 313 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~-~~~~e~~~~~~~ad---v~v~ps~~e----~~~~~~~Ea~a~G~pvi~~ 313 (390)
..+.+..++.|.. +..... .+.+++.+.+...+ +++.|.... +.-..+++++..|+|+++.
T Consensus 14 ~~i~~~l~~~G~~--~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~PilGI 82 (192)
T 1i1q_B 14 WNLADQLRTNGHN--VVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGI 82 (192)
T ss_dssp HHHHHHHHHTTCE--EEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEE
T ss_pred HHHHHHHHHCCCe--EEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCEEEE
Confidence 5567777777753 433333 34455555554434 777764321 2223467777789999874
No 254
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=23.83 E-value=47 Score=29.57 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=41.7
Q ss_pred HHHHHhcceEEeCCCCCCCCcc--HHhhhh---------cCCCEEEec---CCCcccc--------eecCc-cee-eecC
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIV--PIEAMF---------CKRPVIAVN---SGGPKES--------VVDGR-TGF-LCES 333 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~--~~Ea~a---------~G~pvi~~~---~~~~~e~--------i~~~~-~g~-~~~~ 333 (390)
..++..||++|.-+ .|+|+- ++|++. .++|||..+ ..++.+- +.+.. ..+ .+.+
T Consensus 240 ~~mv~~SDAfIaLP--GG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll~~l~~~l~~~~~~~~iiv~d 317 (460)
T 3bq9_A 240 EAFVRCAHGIVIFP--GGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIID 317 (460)
T ss_dssp HHHHHHCSEEEECS--CSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHTCTTGGGGCEEEES
T ss_pred HHHHHhCCEEEEcC--CCcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHHHHHHHHhcchhhcCcEEEeC
Confidence 56677899877522 355653 677777 489999986 2333221 11111 222 2323
Q ss_pred CHHHHHHHHHHHhcCC
Q psy12587 334 NEEAFAKAMKKIVDND 349 (390)
Q Consensus 334 ~~~~l~~~i~~l~~~~ 349 (390)
|++++.+.+.+.+..-
T Consensus 318 dpeEal~~l~~~~~~v 333 (460)
T 3bq9_A 318 DPAAVAQHMHAGMAAV 333 (460)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999988766543
No 255
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=23.44 E-value=3e+02 Score=25.29 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-----CcEEEecC----------CC--
Q psy12587 211 LAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-----DNVLFLTS----------PS-- 273 (390)
Q Consensus 211 ~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-----~~v~~~g~----------~~-- 273 (390)
-++.|++...++..+ .++++.|.|... ..-.+.+.....+.|++ .+|.+... ++
T Consensus 268 gllnAlki~gk~l~d-----~riv~~GAGaAg----~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~l~~~ 338 (555)
T 1gq2_A 268 GLLAALRITKNRLSD-----HTVLFQGAGEAA----LGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPE 338 (555)
T ss_dssp HHHHHHHHHTSCGGG-----CCEEEECCSHHH----HHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTT
T ss_pred HHHHHHHHhCCChhh-----cEEEEECCCHHH----HHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCCCCchHH
Confidence 456666666555554 899999988542 11113333333335653 45555321 11
Q ss_pred ----------hHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--cCCCEEE
Q psy12587 274 ----------DAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF--CKRPVIA 312 (390)
Q Consensus 274 ----------~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a--~G~pvi~ 312 (390)
...+.+.++. +|++|-.|. ...|.--++++|+ +..|+|-
T Consensus 339 k~~~A~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 392 (555)
T 1gq2_A 339 KEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIF 392 (555)
T ss_dssp GGGGCBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEE
T ss_pred HHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 1137788885 999998885 4556666888887 3555555
No 256
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=23.32 E-value=1.3e+02 Score=25.73 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=51.6
Q ss_pred CeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCC
Q psy12587 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS 273 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~ 273 (390)
++.++.+|-- .-+...++.++.. + +++++-+-+... +..++.+++++.. ..+ -+
T Consensus 26 ~irvgiiG~G--~~~~~~~~~~~~~-----~-----~~~lvav~d~~~---------~~a~~~a~~~~~~---~~~--~~ 79 (361)
T 3u3x_A 26 ELRFAAVGLN--HNHIYGQVNCLLR-----A-----GARLAGFHEKDD---------ALAAEFSAVYADA---RRI--AT 79 (361)
T ss_dssp CCEEEEECCC--STTHHHHHHHHHH-----T-----TCEEEEEECSCH---------HHHHHHHHHSSSC---CEE--SC
T ss_pred CcEEEEECcC--HHHHHHHHHHhhc-----C-----CcEEEEEEcCCH---------HHHHHHHHHcCCC---ccc--CC
Confidence 4566666642 1233444555432 2 377765554432 6677778887531 111 23
Q ss_pred hHHHHHHHHh--cceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 274 DAAKISLFKF--CHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 274 ~~e~~~~~~~--adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
. .+++.. .|+++..+....-.-.+.+|+..|++|++=.
T Consensus 80 ~---~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 80 A---EEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp H---HHHHTCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEEES
T ss_pred H---HHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeC
Confidence 3 356665 7887765532222224678999999999844
No 257
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=23.29 E-value=1.6e+02 Score=24.72 Aligned_cols=54 Identities=0% Similarity=-0.089 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+..++.+++++.+ +-+. .+++. ..|+++..+......-.+.+|+..|++|++-.
T Consensus 39 ~~~~~~~~~~~~~-------~~~~---~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EK 94 (331)
T 4hkt_A 39 AAAEAIAGAYGCE-------VRTI---DAIEAAADIDAVVICTPTDTHADLIERFARAGKAIFCEK 94 (331)
T ss_dssp HHHHHHHHHTTCE-------ECCH---HHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred HHHHHHHHHhCCC-------cCCH---HHHhcCCCCCEEEEeCCchhHHHHHHHHHHcCCcEEEec
Confidence 5667777777642 2233 35676 78988776543222334678999999999844
No 258
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=23.24 E-value=1.9e+02 Score=19.89 Aligned_cols=42 Identities=7% Similarity=0.147 Sum_probs=26.8
Q ss_pred CCCEEEe-cCCC---cccceecCcceeeecC--CHHHHHHHHHHHhcC
Q psy12587 307 KRPVIAV-NSGG---PKESVVDGRTGFLCES--NEEAFAKAMKKIVDN 348 (390)
Q Consensus 307 G~pvi~~-~~~~---~~e~i~~~~~g~~~~~--~~~~l~~~i~~l~~~ 348 (390)
.+|+|.. .... ..+.+..|..+++..+ +.+++..+|..++..
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 6777763 3221 2233445667777765 889999999888754
No 259
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=23.18 E-value=2.3e+02 Score=24.07 Aligned_cols=121 Identities=10% Similarity=0.096 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHHHhc
Q psy12587 208 NLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLFKFC 284 (390)
Q Consensus 208 ~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~~~a 284 (390)
.++.+.++++..++.+.. +.+.+.- .+...+.+.+|..++-+.+.+.|. +.|.+ .|...+.++.++++..
T Consensus 135 ~l~~~~~~v~~ak~~G~~-----v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Ga-~~i~l~DT~G~~~P~~v~~lv~~l 207 (337)
T 3ble_A 135 FFTDVSFVIEYAIKSGLK-----INVYLED-WSNGFRNSPDYVKSLVEHLSKEHI-ERIFLPDTLGVLSPEETFQGVDSL 207 (337)
T ss_dssp HHHHHHHHHHHHHHTTCE-----EEEEEET-HHHHHHHCHHHHHHHHHHHHTSCC-SEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCE-----EEEEEEE-CCCCCcCCHHHHHHHHHHHHHcCC-CEEEEecCCCCcCHHHHHHHHHHH
Confidence 345556666666665442 4444322 000122334666677777778885 56666 4666776666655532
Q ss_pred -----c--eEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHHHHHHHHH
Q psy12587 285 -----H--CIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKI 345 (390)
Q Consensus 285 -----d--v~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l~~~i~~l 345 (390)
+ +-++. .+.+|+. .+.|+.+|.-.|-+..+|+.+- +|-. +.|+++..+...
T Consensus 208 ~~~~p~~~i~~H~--Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG~~-----aGN~---~~E~lv~~L~~~ 268 (337)
T 3ble_A 208 IQKYPDIHFEFHG--HNDYDLSVANSLQAIRAGVKGLHASINGLGER-----AGNT---PLEALVTTIHDK 268 (337)
T ss_dssp HHHCTTSCEEEEC--BCTTSCHHHHHHHHHHTTCSEEEEBGGGCSST-----TCBC---BHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEe--cCCcchHHHHHHHHHHhCCCEEEEeccccccc-----ccch---hHHHHHHHHHHh
Confidence 2 33333 3445553 6789999999999988888862 2211 567777777665
No 260
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=23.03 E-value=1.9e+02 Score=19.86 Aligned_cols=108 Identities=14% Similarity=0.207 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh-------cceEEeCCCC-CCCCccHHh
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF-------CHCIIYTPSN-EHFGIVPIE 302 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~-------adv~v~ps~~-e~~~~~~~E 302 (390)
.++.|+.+.+ .....++...+..|.. .|... .+..+..+.+.. .|++++--.. +.-|..+++
T Consensus 3 ~~ILivdD~~-------~~~~~l~~~L~~~g~~-~v~~~--~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~ 72 (133)
T 2r25_B 3 VKILVVEDNH-------VNQEVIKRMLNLEGIE-NIELA--CDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTK 72 (133)
T ss_dssp SCEEEECSCH-------HHHHHHHHHHHHTTCC-CEEEE--SSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHH
T ss_pred ceEEEEcCCH-------HHHHHHHHHHHHcCCc-eEEEE--CCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHH
Confidence 4566666543 2335566666665532 23322 233444555543 5888774332 233455555
Q ss_pred hhh----cCCCEEE-ecCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 303 AMF----CKRPVIA-VNSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 303 a~a----~G~pvi~-~~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
.+. ...|||. |..... .+.+..|..+++..| +.+++.+++.+++..
T Consensus 73 ~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 73 MIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp HHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred HHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 543 3568776 333322 334456778999999 999999999988754
No 261
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.91 E-value=1.7e+02 Score=19.26 Aligned_cols=93 Identities=10% Similarity=0.045 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh---cCCCEEE-ecCCC-cccc
Q psy12587 250 YKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF---CKRPVIA-VNSGG-PKES 321 (390)
Q Consensus 250 ~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a---~G~pvi~-~~~~~-~~e~ 321 (390)
...+....+..|. .+... -+..+....+.. .|++++-... +.-|..+++.+. ...|+|. |.... ..+.
T Consensus 14 ~~~l~~~l~~~~~--~v~~~--~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 89 (116)
T 3a10_A 14 RELLKEELQEEGY--EIDTA--ENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDM 89 (116)
T ss_dssp HHHHHHHHHHTTC--EEEEE--SSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGGGCG
T ss_pred HHHHHHHHHHCCC--EEEEe--CCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchHHHH
Confidence 3556666666553 23322 334444555554 5677664332 233445555443 4577765 33221 1344
Q ss_pred eecCcceeeecC-CHHHHHHHHHHHh
Q psy12587 322 VVDGRTGFLCES-NEEAFAKAMKKIV 346 (390)
Q Consensus 322 i~~~~~g~~~~~-~~~~l~~~i~~l~ 346 (390)
...|..+++..+ +.+++..++..++
T Consensus 90 ~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 90 SSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred HhccccceEECCCCHHHHHHHHHHHh
Confidence 455667899999 9999999988764
No 262
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=22.82 E-value=3.1e+02 Score=22.29 Aligned_cols=106 Identities=9% Similarity=0.058 Sum_probs=62.7
Q ss_pred EEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcc------hhHHHHHHHHHHHHcCCCCcEEEecC
Q psy12587 198 LSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIE------NVEYYKELGVLVKKLKLSDNVLFLTS 271 (390)
Q Consensus 198 ~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~------~~~y~~~~~~~~~~~~l~~~v~~~g~ 271 (390)
+.+|- ......+..++.+..+++.+ ..++..+...+++.. ..+-...+.+..++.|++- +...
T Consensus 26 vIAgp-c~~~~~e~a~~~a~~l~~~G-------a~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~---~te~ 94 (262)
T 1zco_A 26 IIAGP-CSIESREQIMKVAEFLAEVG-------IKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVT---VTEV 94 (262)
T ss_dssp EEEEC-SBCCCHHHHHHHHHHHHHTT-------CCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEE---EEEC
T ss_pred EEEeC-CCCCCHHHHHHHHHHHHHcC-------CCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcE---EEee
Confidence 33444 55667889999999888864 334454543333211 1344578888888988742 2333
Q ss_pred CChHHHHHHHHhcceEEeCCCCCCCCccHHh-hhhcCCCEEEecC
Q psy12587 272 PSDAAKISLFKFCHCIIYTPSNEHFGIVPIE-AMFCKRPVIAVNS 315 (390)
Q Consensus 272 ~~~~e~~~~~~~adv~v~ps~~e~~~~~~~E-a~a~G~pvi~~~~ 315 (390)
.+...+..+...+|++-.+|.. .....+++ ....|+||+.+..
T Consensus 95 ~d~~~~~~l~~~vd~~kIga~~-~~n~~ll~~~a~~~kPV~lk~G 138 (262)
T 1zco_A 95 MDTRHVELVAKYSDILQIGARN-SQNFELLKEVGKVENPVLLKRG 138 (262)
T ss_dssp CCGGGHHHHHHHCSEEEECGGG-TTCHHHHHHHTTSSSCEEEECC
T ss_pred CCHHhHHHHHhhCCEEEECccc-ccCHHHHHHHHhcCCcEEEecC
Confidence 3443333333348888887752 22334444 4448999999774
No 263
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=22.79 E-value=3.2e+02 Score=22.45 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=89.9
Q ss_pred HHHHhcCcceEEEccHhHHHHHHHHhccCCCCceeecCCCCCCCCCCCCCccchhhhcCCCCCCCCeEEEEeecccccCC
Q psy12587 129 EEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKN 208 (390)
Q Consensus 129 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~g~~~~~K~ 208 (390)
+++.-.+.|.|++.+......+.+... ++-++..+++...-.... .... .....+ ..+. ..-.
T Consensus 63 ~~l~~~~~DlIiai~t~aa~a~~~~~~-----~iPVVf~~v~dp~~~~l~-----~~~~--~~g~nv--tGv~---~~~~ 125 (302)
T 3lkv_A 63 RQFVGENPDVLVGIATPTAQALVSATK-----TIPIVFTAVTDPVGAKLV-----KQLE--QPGKNV--TGLS---DLSP 125 (302)
T ss_dssp HHHHTTCCSEEEEESHHHHHHHHHHCS-----SSCEEEEEESCTTTTTSC-----SCSS--SCCSSE--EEEE---CCCC
T ss_pred HHHHhcCCcEEEEcCCHHHHHHHhhcC-----CCCeEEEecCCcchhhhc-----cccc--CCCCcE--EEEE---CCcC
Confidence 345566899999988777776666422 333333333211100000 0000 111222 2222 2234
Q ss_pred HHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHH----HHHHhc
Q psy12587 209 LELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKI----SLFKFC 284 (390)
Q Consensus 209 ~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~----~~~~~a 284 (390)
+..-++.+.++.... -++.++++... .......+.+++.++++|+ .+......+..++. .+....
T Consensus 126 ~~~~l~l~~~l~P~~-------k~vgvi~~~~~--~~s~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~l~~~~ 194 (302)
T 3lkv_A 126 VEQHVELIKEILPNV-------KSIGVVYNPGE--ANAVSLMELLKLSAAKHGI--KLVEATALKSADVQSATQAIAEKS 194 (302)
T ss_dssp HHHHHHHHHHHSTTC-------CEEEEEECTTC--HHHHHHHHHHHHHHHHTTC--EEEEEECSSGGGHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCC-------CEEEEEeCCCc--ccHHHHHHHHHHHHHHcCC--EEEEEecCChHHHHHHHHhccCCe
Confidence 566667776664322 24444443322 1223344678888888886 24333434444433 344567
Q ss_pred ceEEeCCCCC---CCCccHHhhhhcCCCEEEecCCCcccceecCcceeeecCCHHHH----HHHHHHHhc
Q psy12587 285 HCIIYTPSNE---HFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAF----AKAMKKIVD 347 (390)
Q Consensus 285 dv~v~ps~~e---~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~~~~~~~~l----~~~i~~l~~ 347 (390)
|+++.+.... .......-+...++|+++.+. ..+..|..|-+.. |..++ ++.+.++|+
T Consensus 195 d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~~~----~~v~~G~l~~~~~-~~~~~G~~aa~~a~~IL~ 259 (302)
T 3lkv_A 195 DVIYALIDNTVASAIEGMIVAANQAKTPVFGAAT----SYVERGAIASLGF-DYYQIGVQTADYVAAILE 259 (302)
T ss_dssp SEEEECSCHHHHHTHHHHHHHHHHTTCCEEESSH----HHHHTTCSEEEEC-CHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCcchhhHHHHHHHHHhhcCCceeeccc----ccccCCceEEEec-CHHHHHHHHHHHHHHHHC
Confidence 8887765321 111123345678999998653 3344444333333 44433 444555554
No 264
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=22.54 E-value=1.5e+02 Score=23.07 Aligned_cols=61 Identities=13% Similarity=0.013 Sum_probs=38.9
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHhcceEEeCCCCCCCCccHHhhhhcCCC
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~adv~v~ps~~e~~~~~~~Ea~a~G~p 309 (390)
++++.+.|-.+ +++++.++.+|. .+.... ..+..+|.+... -..+++.|++.|+|
T Consensus 12 ~~~v~~sG~~~----------~~~~~~i~~lGg----~~~~~~---------~~~THlI~~~~~--rt~K~l~a~~~g~~ 66 (209)
T 2etx_A 12 APKVLFTGVVD----------ARGERAVLALGG----SLAGSA---------AEASHLVTDRIR--RTVKFLCALGRGIP 66 (209)
T ss_dssp CCEEEECSSCC----------HHHHHHHHHTTC----EECSST---------TTCSEEECSSCC--CSHHHHHHHHHTCC
T ss_pred CcEEEEeCCCc----------HHHHHHHHHCCC----EEeCCC---------CCceEEEECCCC--CCHHHHHHHhcCCc
Confidence 46777766543 556888888873 222211 235666665421 24678999999999
Q ss_pred EEEecC
Q psy12587 310 VIAVNS 315 (390)
Q Consensus 310 vi~~~~ 315 (390)
||..+.
T Consensus 67 IV~~~W 72 (209)
T 2etx_A 67 ILSLDW 72 (209)
T ss_dssp EECTHH
T ss_pred cccHHH
Confidence 998764
No 265
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=22.51 E-value=1.4e+02 Score=25.33 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+..++.+++++.+ .+ +-+. .+++. .+|+++..+......-.+.+|+..|++|++-.
T Consensus 38 ~~~~~~~~~~~~~-~~----~~~~---~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EK 95 (344)
T 3ezy_A 38 DRLREMKEKLGVE-KA----YKDP---HELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEK 95 (344)
T ss_dssp HHHHHHHHHHTCS-EE----ESSH---HHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHhCCC-ce----eCCH---HHHhcCCCCCEEEEcCCCcchHHHHHHHHhcCCeEEEEC
Confidence 5667777777642 11 1233 35677 78988876543222234678999999999754
No 266
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=22.50 E-value=1.9e+02 Score=19.63 Aligned_cols=108 Identities=11% Similarity=0.162 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhhc-
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMFC- 306 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a~- 306 (390)
.++.++.+.+ .....+....++.|. .|.. .-+..+....+.. .|++++-.. .+.-|..+++.+..
T Consensus 7 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 75 (132)
T 3lte_A 7 KRILVVDDDQ-------AMAAAIERVLKRDHW--QVEI--AHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQN 75 (132)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHHTTC--EEEE--ESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTT
T ss_pred ccEEEEECCH-------HHHHHHHHHHHHCCc--EEEE--eCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 5677776543 233556666666543 2332 2344554555543 566666433 34445566665542
Q ss_pred ----CCCEEEecCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 307 ----KRPVIAVNSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 307 ----G~pvi~~~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
..|+|.+..... .+.+..|..+++..+ +.+++.++|.+.....
T Consensus 76 ~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 76 KVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp TCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred CccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 344555433222 233456778899999 9999999999887644
No 267
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=22.46 E-value=1.4e+02 Score=22.96 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=18.6
Q ss_pred eEEEEeecccccCCHHHHHHHHHHHHhh
Q psy12587 195 IVFLSINRYERKKNLELAIYSLNSLRSR 222 (390)
Q Consensus 195 ~~i~~~g~~~~~K~~~~ll~a~~~l~~~ 222 (390)
.+.+.+|+.++.-.-..+.+++.++.+.
T Consensus 4 ~I~vi~GS~R~~S~~~~la~~~~~~~~~ 31 (190)
T 3u7r_A 4 TVAVMVGSLRKDSLNHKLMKVLQKLAEG 31 (190)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhccC
Confidence 3556788887655556677777776554
No 268
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=22.21 E-value=83 Score=26.63 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 251 ~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+..++.+++++.+. + +-+. .+++. ..|+++..+....-.-.+.+|+..|++|++-.
T Consensus 40 ~~a~~~a~~~~~~~-~----~~~~---~~ll~~~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EK 97 (334)
T 3ohs_X 40 SRAKEFAQKHDIPK-A----YGSY---EELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEK 97 (334)
T ss_dssp HHHHHHHHHHTCSC-E----ESSH---HHHHHCTTCCEEEECCCGGGHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHcCCCc-c----cCCH---HHHhcCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEC
Confidence 66777888887632 2 1233 35676 58888776543222234678999999999854
No 269
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=22.07 E-value=1.2e+02 Score=26.89 Aligned_cols=73 Identities=8% Similarity=0.045 Sum_probs=46.9
Q ss_pred eEEeCCCC-CCCCccHHhhhhcCCCEEEecCCCcccceecCcceee-ecC-CHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q psy12587 286 CIIYTPSN-EHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFL-CES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFN 362 (390)
Q Consensus 286 v~v~ps~~-e~~~~~~~Ea~a~G~pvi~~~~~~~~e~i~~~~~g~~-~~~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 362 (390)
++.+||.. +|---++.+.+..|.||.++.. ...-++.+. |+. ... +..+-+++|.. +.+|+ .+..+.+.+++
T Consensus 357 ii~~~st~~~G~is~iv~~~~~g~~v~~~~~-~v~~vVTE~--Gva~L~G~~~~Era~~li~-iAhpd-fr~~L~~~a~~ 431 (434)
T 3eh7_A 357 IMAIPSTAKNGTASRIVPIIAEGAAVTTLRN-EVDYVVTEY--GIAQLKGKSLRQRAEALIA-IAHPD-FREELTKHLRK 431 (434)
T ss_dssp EEECCSEETTTTEESEESSCCTTCCEEECTT-TCCEEEETT--EEEECTTCCHHHHHHHHHT-TSCHH-HHHHHHHHHHH
T ss_pred EEEEeeecCCCCCCeEeeCCCCCCCceeCcc-ceeEEEccc--EEEECCCCCHHHHHHHHhc-CCCCC-cHHHHHHHHHH
Confidence 55556653 3331356667777877777652 233344443 322 234 89999999987 88999 99999877765
Q ss_pred H
Q psy12587 363 R 363 (390)
Q Consensus 363 ~ 363 (390)
.
T Consensus 432 ~ 432 (434)
T 3eh7_A 432 R 432 (434)
T ss_dssp H
T ss_pred h
Confidence 4
No 270
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=22.04 E-value=1.6e+02 Score=25.51 Aligned_cols=92 Identities=10% Similarity=0.002 Sum_probs=51.6
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
.++.++.+|.- . | ..-++++.++.+ +++++=+-+.+. +..++.++++|++ .+ -
T Consensus 6 ~~~rv~VvG~G--~-g-~~h~~a~~~~~~--------~~elvav~~~~~---------~~a~~~a~~~gv~----~~--~ 58 (372)
T 4gmf_A 6 PKQRVLIVGAK--F-G-EMYLNAFMQPPE--------GLELVGLLAQGS---------ARSRELAHAFGIP----LY--T 58 (372)
T ss_dssp -CEEEEEECST--T-T-HHHHHTTSSCCT--------TEEEEEEECCSS---------HHHHHHHHHTTCC----EE--S
T ss_pred CCCEEEEEehH--H-H-HHHHHHHHhCCC--------CeEEEEEECCCH---------HHHHHHHHHhCCC----EE--C
Confidence 56777888852 1 3 233444443322 377764433333 7788889998863 22 2
Q ss_pred ChHHHHHHHHhcceEEeCCCCCCC-C--c-cHHhhhhcCCCEEEec
Q psy12587 273 SDAAKISLFKFCHCIIYTPSNEHF-G--I-VPIEAMFCKRPVIAVN 314 (390)
Q Consensus 273 ~~~e~~~~~~~adv~v~ps~~e~~-~--~-~~~Ea~a~G~pvi~~~ 314 (390)
+.++ ++...|+.+..+....- + . ...+|+..|++|++=.
T Consensus 59 ~~~~---l~~~~D~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EK 101 (372)
T 4gmf_A 59 SPEQ---ITGMPDIACIVVRSTVAGGAGTQLARHFLARGVHVIQEH 101 (372)
T ss_dssp SGGG---CCSCCSEEEECCC--CTTSHHHHHHHHHHHTTCEEEEES
T ss_pred CHHH---HhcCCCEEEEECCCcccchhHHHHHHHHHHcCCcEEEec
Confidence 3343 45678876554322111 1 2 3567899999999854
No 271
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=21.90 E-value=1.8e+02 Score=19.30 Aligned_cols=105 Identities=11% Similarity=0.106 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCCC-CCCCccHHhhhh--c
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPSN-EHFGIVPIEAMF--C 306 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~~-e~~~~~~~Ea~a--~ 306 (390)
++.++.+.+ .....+....+..|. .+... .+..+....+.. .|++++-... +.-|..+++.+. .
T Consensus 4 ~ilivdd~~-------~~~~~l~~~L~~~~~--~v~~~--~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 72 (122)
T 1zgz_A 4 HIVIVEDEP-------VTQARLQSYFTQEGY--TVSVT--ASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERS 72 (122)
T ss_dssp EEEEECSSH-------HHHHHHHHHHHHTTC--EEEEE--SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTC
T ss_pred EEEEEECCH-------HHHHHHHHHHHHCCC--eEEEe--cCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcC
Confidence 456665442 233566666666553 23322 344555555554 5777764332 233455555553 4
Q ss_pred CCCEEEe-cCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 307 KRPVIAV-NSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 307 G~pvi~~-~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..|+|.. ..... .+.+..|..+++..+ +.+++...+..++.
T Consensus 73 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 73 TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 5777663 33222 233455778899999 99999999987653
No 272
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=21.88 E-value=63 Score=25.27 Aligned_cols=67 Identities=9% Similarity=0.070 Sum_probs=41.7
Q ss_pred hcceEEeCCC-CCCCCccHHhhh----hcCCCEEEe-cCCC---cccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 283 FCHCIIYTPS-NEHFGIVPIEAM----FCKRPVIAV-NSGG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 283 ~adv~v~ps~-~e~~~~~~~Ea~----a~G~pvi~~-~~~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
..|++++-.. .+.-|..+++.+ ...+|||.- .... ....+..|..|++..+ +++++..+|..++...
T Consensus 54 ~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 54 SIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp GCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 3577766322 233344555443 346787763 3222 2233456778999999 9999999999998753
No 273
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=21.48 E-value=79 Score=23.85 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=35.9
Q ss_pred HHHHHhcceEEeCCCCCCCCcc--HHhhhh-------cCCCEEEecCCCcccce------ecCc-ceeeecCCHHHHHHH
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIV--PIEAMF-------CKRPVIAVNSGGPKESV------VDGR-TGFLCESNEEAFAKA 341 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~--~~Ea~a-------~G~pvi~~~~~~~~e~i------~~~~-~g~~~~~~~~~l~~~ 341 (390)
.-+...||.+|.-. -|+|+- ++|++. .++| +.-+ +....++ .+.. .-+.+.+|++++.+.
T Consensus 92 ~~~~~~sda~ivlp--GG~GTl~El~e~lt~~q~g~~~~kP-vll~-g~~~~l~~~~gfi~~~~~~~~~~~~~~~e~~~~ 167 (171)
T 1weh_A 92 GRLLDLGAGYLALP--GGVGTLAELVLAWNLLYLRRGVGRP-LAVD-PYWLGLLKAHGEIAPEDVGLLRVVADEEDLRRF 167 (171)
T ss_dssp HHHHHHEEEEEECS--CCHHHHHHHHHHHHHHHTCSSCSCC-EEEC-GGGGGTCCCBTTBCHHHHTTSEECCSHHHHHHH
T ss_pred HHHHHhCCEEEEeC--CCccHHHHHHHHHHHHHhCccCCCe-EEEC-cchhhhHhhcCCCChhhcCeEEEeCCHHHHHHH
Confidence 45566789776532 245553 788888 7899 7777 4333333 1111 112333378887777
Q ss_pred HHH
Q psy12587 342 MKK 344 (390)
Q Consensus 342 i~~ 344 (390)
+.+
T Consensus 168 l~~ 170 (171)
T 1weh_A 168 LRS 170 (171)
T ss_dssp HHT
T ss_pred HHh
Confidence 654
No 274
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=21.45 E-value=2e+02 Score=19.70 Aligned_cols=108 Identities=10% Similarity=0.053 Sum_probs=58.0
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh---cceEEeCCCC-CCCCccHHhhhh
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF---CHCIIYTPSN-EHFGIVPIEAMF 305 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~---adv~v~ps~~-e~~~~~~~Ea~a 305 (390)
..++.++.+.+ .....+....+..|. .|.. .-+..+....+.. .|++++-... +.-|..+++.+.
T Consensus 15 ~~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~ 83 (138)
T 2b4a_A 15 PFRVTLVEDEP-------SHATLIQYHLNQLGA--EVTV--HPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVK 83 (138)
T ss_dssp CCEEEEECSCH-------HHHHHHHHHHHHTTC--EEEE--ESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHT
T ss_pred CCeEEEECCCH-------HHHHHHHHHHHHcCC--EEEE--eCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 35666766543 223555666665543 2332 2233444455544 5777664332 233455555554
Q ss_pred ---cCCCEEE-e-cCCCcccceecCcceeeecC-CHHHHHHHHHHHhcCC
Q psy12587 306 ---CKRPVIA-V-NSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349 (390)
Q Consensus 306 ---~G~pvi~-~-~~~~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~~ 349 (390)
..+|+|. + ....... ...-..+++..+ +.+++...+..++...
T Consensus 84 ~~~~~~~ii~ls~~~~~~~~-~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 84 EQTKQPSVLILTTGRHELIE-SSEHNLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp TSSSCCEEEEEESCC--CCC-CSSSCEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred hhCCCCCEEEEECCCCCHHH-HHHHHHheeeCCCCHHHHHHHHHHHHHhc
Confidence 3577766 3 3322211 111156788888 9999999999887643
No 275
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=21.40 E-value=1.9e+02 Score=19.31 Aligned_cols=105 Identities=10% Similarity=0.117 Sum_probs=59.6
Q ss_pred EEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--c
Q psy12587 232 KLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF--C 306 (390)
Q Consensus 232 ~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a--~ 306 (390)
++.++.+.+ .....+....++.|. .+.. .-+..+..+.+.. .|++++-.. .+.-|..+++.+. .
T Consensus 4 ~ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~ 72 (120)
T 3f6p_A 4 KILVVDDEK-------PIADILEFNLRKEGY--EVHC--AHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKY 72 (120)
T ss_dssp EEEEECSCH-------HHHHHHHHHHHHTTC--EEEE--ESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTC
T ss_pred eEEEEECCH-------HHHHHHHHHHHhCCE--EEEE--eCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 455665432 233556666666553 2332 2344555555543 566666433 2333444544432 3
Q ss_pred CCCEEEec-CCCc---ccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 307 KRPVIAVN-SGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 307 G~pvi~~~-~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
++|+|... .... .+.+..|..+++..| +.+++..++..++.
T Consensus 73 ~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 73 DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 67877633 2222 233456778999999 99999999988764
No 276
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=21.39 E-value=3e+02 Score=21.60 Aligned_cols=59 Identities=8% Similarity=-0.044 Sum_probs=27.1
Q ss_pred ceEEeCCCCCCC--CccHHhhhhcCCCEEEecCC------CcccceecCcceeeec-C-CHHHHHHHHHHH
Q psy12587 285 HCIIYTPSNEHF--GIVPIEAMFCKRPVIAVNSG------GPKESVVDGRTGFLCE-S-NEEAFAKAMKKI 345 (390)
Q Consensus 285 dv~v~ps~~e~~--~~~~~Ea~a~G~pvi~~~~~------~~~e~i~~~~~g~~~~-~-~~~~l~~~i~~l 345 (390)
-+-++||..-.| ...+..|+..|........- ...+++... -+-+. . +.+++.+.+..+
T Consensus 107 ~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~lD~G~Ii~Q~--~v~I~~~dt~~~L~~rl~~~ 175 (215)
T 3kcq_A 107 IINIHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQA--AVPVLREDTAESLASRILAA 175 (215)
T ss_dssp EEEEESSCTTTTCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEE--EEECCTTCCHHHHHHHHHHH
T ss_pred eEEECcccccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEEEE--EeecCCCCCHHHHHHHHHHH
Confidence 344555542222 22455677777665543221 222333221 12222 2 677777766554
No 277
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=21.32 E-value=2.9e+02 Score=25.70 Aligned_cols=93 Identities=13% Similarity=0.132 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-----CcEEEecC----------CCh-
Q psy12587 211 LAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-----DNVLFLTS----------PSD- 274 (390)
Q Consensus 211 ~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-----~~v~~~g~----------~~~- 274 (390)
-++.|++...++..+ .++++.|.|... ..-.+.+.....+.|++ .+|.+... +++
T Consensus 306 gllnAlki~gk~l~d-----~riv~~GAGaAg----igia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~ 376 (605)
T 1o0s_A 306 GLLTCTRVTKKLVSQ-----EKYLFFGAGAAS----TGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPR 376 (605)
T ss_dssp HHHHHHHHHCCCGGG-----CCEEEECCSHHH----HHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGG
T ss_pred HHHHHHHHhCCChhh-----cEEEEECCCHHH----HHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHH
Confidence 345666665555554 899999988642 11112333333335653 45544321 111
Q ss_pred -----------HHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--cCCCEEE
Q psy12587 275 -----------AAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF--CKRPVIA 312 (390)
Q Consensus 275 -----------~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a--~G~pvi~ 312 (390)
..+.+.++. +|++|-.|. ...|.--++++|+ +..|||-
T Consensus 377 k~~~A~~~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 430 (605)
T 1o0s_A 377 HVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIF 430 (605)
T ss_dssp GTTTCBSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEE
T ss_pred HHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 137788885 999998885 4556667888888 3566665
No 278
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=21.32 E-value=48 Score=23.15 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=38.5
Q ss_pred cceEEeCCC-CCCCCccHHhhhh---cCCCEEEecC-CC---cccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 284 CHCIIYTPS-NEHFGIVPIEAMF---CKRPVIAVNS-GG---PKESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 284 adv~v~ps~-~e~~~~~~~Ea~a---~G~pvi~~~~-~~---~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
.|++++-.. .+.-|..+++.+. ..+|+|.... .. ..+.+..|..+++..+ +.+++..+|..++..
T Consensus 60 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 60 PGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 466665322 2233444444332 3688877432 22 2234456778899999 999999999987653
No 279
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=21.25 E-value=1.9e+02 Score=19.30 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCCC-CCCCccHHhhh---
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPSN-EHFGIVPIEAM--- 304 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~~-e~~~~~~~Ea~--- 304 (390)
.++.++.+.+ .....+....+..|. .+. ..-+..+....+. ..|++++-... +.-|..+++.+
T Consensus 4 ~~ilivdd~~-------~~~~~l~~~l~~~~~--~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (124)
T 1srr_A 4 EKILIVDDQS-------GIRILLNEVFNKEGY--QTF--QAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVI 72 (124)
T ss_dssp CEEEEECSCH-------HHHHHHHHHHHTTTC--EEE--EESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHH
T ss_pred ceEEEEeCCH-------HHHHHHHHHHHHCCc--EEE--EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 4566776543 333556666665543 233 2234455455554 36777764332 22344455544
Q ss_pred hcCCCEEEe-cCCCc---ccceecCcceeeecC-CHHHHHHHHHHHhcC
Q psy12587 305 FCKRPVIAV-NSGGP---KESVVDGRTGFLCES-NEEAFAKAMKKIVDN 348 (390)
Q Consensus 305 a~G~pvi~~-~~~~~---~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~~ 348 (390)
...+|+|.. ..... .+.+..|..+++..+ +.+++..++.+++..
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 73 DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 346787763 33222 233445678899999 999999999887653
No 280
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=21.14 E-value=3.8e+02 Score=22.66 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=51.1
Q ss_pred CCeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCC
Q psy12587 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSP 272 (390)
Q Consensus 193 ~~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~ 272 (390)
+...++.+|--.- | ...+.++.... + +++++-+-+... +..++.++++++ .. +-
T Consensus 12 ~~~rvgiiG~G~~--g-~~~~~~l~~~~---~-----~~~lvav~d~~~---------~~~~~~~~~~~~----~~--~~ 65 (354)
T 3q2i_A 12 RKIRFALVGCGRI--A-NNHFGALEKHA---D-----RAELIDVCDIDP---------AALKAAVERTGA----RG--HA 65 (354)
T ss_dssp SCEEEEEECCSTT--H-HHHHHHHHHTT---T-----TEEEEEEECSSH---------HHHHHHHHHHCC----EE--ES
T ss_pred CcceEEEEcCcHH--H-HHHHHHHHhCC---C-----CeEEEEEEcCCH---------HHHHHHHHHcCC----ce--eC
Confidence 4566666665211 1 23345554431 2 277664433322 566777777763 22 22
Q ss_pred ChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCCCEEEec
Q psy12587 273 SDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314 (390)
Q Consensus 273 ~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~pvi~~~ 314 (390)
+.+ ++++ ..|+++..+....-.-.+.+|+..|++|++-.
T Consensus 66 ~~~---~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EK 106 (354)
T 3q2i_A 66 SLT---DMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEK 106 (354)
T ss_dssp CHH---HHHHHCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CHH---HHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCCEEEeC
Confidence 334 5666 68887775543222234678999999999844
No 281
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=20.89 E-value=2e+02 Score=26.08 Aligned_cols=101 Identities=11% Similarity=-0.004 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHH-HHhh--c-ccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHH
Q psy12587 206 KKNLELAIYSLNS-LRSR--L-SDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLF 281 (390)
Q Consensus 206 ~K~~~~ll~a~~~-l~~~--~-~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~ 281 (390)
..|.+..++++-+ +.+. . +.....+-.+.|+|..... . + ..+++++.+++|+.-++.+.|..+-+|+ .-+
T Consensus 192 ~~G~~~a~~al~~~l~~~~~~~~~~~~~~~~VNIiG~~~~~--g--D-~~eik~lL~~~Gi~v~~~~~g~~t~~ei-~~~ 265 (492)
T 3u7q_A 192 SLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIG--G--D-AWSSRILLEEMGLRCVAQWSGDGSISEI-ELT 265 (492)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCCCTTEEEEEEECCBT--T--T-THHHHHHHHHTTCEEEEEEETTCCHHHH-HHG
T ss_pred hHHHHHHHHHHHHHHhhhcccccccCCCCCcEEEECCCCCh--h--h-HHHHHHHHHHCCCeEEEEeCCCCCHHHH-Hhh
Confidence 3467777777765 4432 0 0000123567788854211 0 1 1789999999999877778888888885 456
Q ss_pred HhcceEEeCCCCCCCCccHHhhh--hcCCCEEEec
Q psy12587 282 KFCHCIIYTPSNEHFGIVPIEAM--FCKRPVIAVN 314 (390)
Q Consensus 282 ~~adv~v~ps~~e~~~~~~~Ea~--a~G~pvi~~~ 314 (390)
..|++.+..+.. ++..+.++| -+|+|.+..+
T Consensus 266 ~~A~~niv~~~~--~~~~~A~~Le~~~GiP~i~~~ 298 (492)
T 3u7q_A 266 PKVKLNLVHCYR--SMNYISRHMEEKYGIPWMEYN 298 (492)
T ss_dssp GGCSEEEESCHH--HHHHHHHHHHHHHCCCEEECC
T ss_pred hcCcEEEEEChH--HHHHHHHHHHHHhCCceEecC
Confidence 677776654321 234566666 4799999764
No 282
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=20.87 E-value=1.5e+02 Score=25.99 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=39.0
Q ss_pred ceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecC-----------CCh---------------HHHHHHHHh
Q psy12587 230 HVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-----------PSD---------------AAKISLFKF 283 (390)
Q Consensus 230 ~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~-----------~~~---------------~e~~~~~~~ 283 (390)
+.++++.|.|... -.+-+++..+|. .+|.+... +.+ ..+.+.+..
T Consensus 188 d~kVVi~GAGaAG--------~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ 258 (398)
T 2a9f_A 188 EVSIVVNGGGSAG--------LSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEG 258 (398)
T ss_dssp SCEEEEECCSHHH--------HHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHT
T ss_pred ccEEEEECCCHHH--------HHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhcc
Confidence 4888888888543 455666666675 45554322 111 125667888
Q ss_pred cceEEeCCCCCCCCccHHhhhh
Q psy12587 284 CHCIIYTPSNEHFGIVPIEAMF 305 (390)
Q Consensus 284 adv~v~ps~~e~~~~~~~Ea~a 305 (390)
+|++|-.|...-+.--+++.|+
T Consensus 259 ADV~IG~Sapgl~T~EmVk~Ma 280 (398)
T 2a9f_A 259 ADIFIGVSAPGVLKAEWISKMA 280 (398)
T ss_dssp TCSEEECCSTTCCCHHHHHTSC
T ss_pred CCEEEecCCCCCCCHHHHHhhC
Confidence 9998887653223333555555
No 283
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for structural genomics of infectious diseases, csgid; HET: TRS; 1.44A {Staphylococcus aureus subsp}
Probab=20.80 E-value=1.7e+02 Score=24.81 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=38.3
Q ss_pred CeEEEEeecccccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCC-CcEEEec
Q psy12587 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLS-DNVLFLT 270 (390)
Q Consensus 194 ~~~i~~~g~~~~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~-~~v~~~g 270 (390)
+.+|++.-.- -+..++|+..+.+++. ++++++|+. +.+++.++++++. +.+.+..
T Consensus 19 ~kriv~~eg~-----d~~vl~Aa~~a~~eg~------~~~iLvG~~-----------~~I~~~~~~~g~~~~~~eIi~ 74 (331)
T 4e4r_A 19 NVKIVLPEGE-----DERVLTAATQLQATDY------VTPIVLGDE-----------TKVQSLAQKLNLDISNIELIN 74 (331)
T ss_dssp CEEEEECCTT-----SHHHHHHHHHHHTSSS------EEEEEESCH-----------HHHHHHHHHTTCCCTTSEEEC
T ss_pred CCEEEEecCC-----CHHHHHHHHHHHHcCC------cEEEEECCH-----------HHHHHHHHHcCCCcccCEEEc
Confidence 3555654421 2568888888887753 899999964 7899999988764 3566654
No 284
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=20.80 E-value=1.1e+02 Score=26.25 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHH--hcceEEeCCCCCCCCccHHhhhhcCC
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--FCHCIIYTPSNEHFGIVPIEAMFCKR 308 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~--~adv~v~ps~~e~~~~~~~Ea~a~G~ 308 (390)
++++-+-+... +..++.++++++. +... -+. .+++. ..|+++..+....-.-.+.+|+..|+
T Consensus 49 ~~lvav~d~~~---------~~~~~~a~~~g~~--~~~~--~~~---~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk 112 (357)
T 3ec7_A 49 VEVVAVCDIVA---------GRAQAALDKYAIE--AKDY--NDY---HDLINDKDVEVVIITASNEAHADVAVAALNANK 112 (357)
T ss_dssp EEEEEEECSST---------THHHHHHHHHTCC--CEEE--SSH---HHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTC
T ss_pred cEEEEEEeCCH---------HHHHHHHHHhCCC--Ceee--CCH---HHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCC
Confidence 77764444333 5667777777642 2221 233 35666 47888776543222334678999999
Q ss_pred CEEEec
Q psy12587 309 PVIAVN 314 (390)
Q Consensus 309 pvi~~~ 314 (390)
+|++-.
T Consensus 113 ~Vl~EK 118 (357)
T 3ec7_A 113 YVFCEK 118 (357)
T ss_dssp EEEEES
T ss_pred CEEeec
Confidence 999744
No 285
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=20.77 E-value=68 Score=25.35 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=38.9
Q ss_pred HHHHHhcceEEeCCCCCCCCcc--HHhhhh------cCCCEEEecCCCccc-c-------eecC-----cc-eeeecCCH
Q psy12587 278 ISLFKFCHCIIYTPSNEHFGIV--PIEAMF------CKRPVIAVNSGGPKE-S-------VVDG-----RT-GFLCESNE 335 (390)
Q Consensus 278 ~~~~~~adv~v~ps~~e~~~~~--~~Ea~a------~G~pvi~~~~~~~~e-~-------i~~~-----~~-g~~~~~~~ 335 (390)
.-++..||++|.-. -|+|+- ++|++. .++||+.-+..++.+ + +.++ .. -+.+.+|+
T Consensus 100 ~~~~~~sda~I~lp--GG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ 177 (216)
T 1ydh_A 100 AAMAQEAEAFIALP--GGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTA 177 (216)
T ss_dssp HHHHHHCSEEEECS--CSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEESSH
T ss_pred HHHHHhCCEEEEeC--CCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEeCCH
Confidence 45677899877622 245542 566663 789999988654322 1 1111 11 12333389
Q ss_pred HHHHHHHHHH
Q psy12587 336 EAFAKAMKKI 345 (390)
Q Consensus 336 ~~l~~~i~~l 345 (390)
+++.+.|.+.
T Consensus 178 ee~~~~l~~~ 187 (216)
T 1ydh_A 178 KELMEKMEEY 187 (216)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9998888764
No 286
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=20.67 E-value=1.6e+02 Score=20.44 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=39.1
Q ss_pred eEEEEeeccc--ccCCHHHHHHHHHHHHhhcccccccceEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEec
Q psy12587 195 IVFLSINRYE--RKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLT 270 (390)
Q Consensus 195 ~~i~~~g~~~--~~K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g 270 (390)
.+++=.+.+. ..-|+..++.+.+.+.++ +..+.++|-. +.+.+..+..|+...+.+..
T Consensus 54 ~vvlDls~V~~iDSsGl~~L~~~~~~~~~~-------g~~l~l~~~~-----------~~v~~~l~~~gl~~~~~i~~ 113 (125)
T 2ka5_A 54 KIFLVLSDVESIDSFSLGVIVNILKSISSS-------GGFFALVSPN-----------EKVERVLSLTNLDRIVKIYD 113 (125)
T ss_dssp EEEEECTTCSCCCHHHHHHHHHHHHHHHHH-------TCEEEEECCC-----------HHHHHHHHHTTSTTTSEEES
T ss_pred EEEEECCCCCEEcHHHHHHHHHHHHHHHHc-------CCEEEEEeCC-----------HHHHHHHHHcCCCceEEecC
Confidence 3445444443 234778888888888776 3678888854 77888888888766665543
No 287
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=20.61 E-value=3.7e+02 Score=22.31 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHhhcccccccceEEEEE--cCCCCCCcchhHHHHHHHHHHHHcCCCCcEEE---ecCCChHHHHHHH
Q psy12587 207 KNLELAIYSLNSLRSRLSDEMKTHVKLVVA--GGYDPHNIENVEYYKELGVLVKKLKLSDNVLF---LTSPSDAAKISLF 281 (390)
Q Consensus 207 K~~~~ll~a~~~l~~~~~~~~~~~~~l~i~--G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~---~g~~~~~e~~~~~ 281 (390)
.+++.+.++++..++.+.. ++..+. .+.+...+.+.+|..++-+.+.+.|. +.+.+ .|...+.++.+++
T Consensus 121 e~l~~~~~~v~~a~~~G~~-----V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~-d~i~l~DT~G~~~P~~~~~lv 194 (302)
T 2ftp_A 121 DSLERFVPVLEAARQHQVR-----VRGYISCVLGCPYDGDVDPRQVAWVARELQQMGC-YEVSLGDTIGVGTAGATRRLI 194 (302)
T ss_dssp HHHHHHHHHHHHHHHTTCE-----EEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTC-SEEEEEESSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCe-----EEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCC-CEEEEeCCCCCcCHHHHHHHH
Confidence 3455556666666665442 444332 22222234455666777777778885 55655 4666666666665
Q ss_pred Hhc-------ceEEeCCCCCCCCcc---HHhhhhcCCCEEEecCCCccc-ceecCcceeeecCCHHHHHHHHHHH
Q psy12587 282 KFC-------HCIIYTPSNEHFGIV---PIEAMFCKRPVIAVNSGGPKE-SVVDGRTGFLCESNEEAFAKAMKKI 345 (390)
Q Consensus 282 ~~a-------dv~v~ps~~e~~~~~---~~Ea~a~G~pvi~~~~~~~~e-~i~~~~~g~~~~~~~~~l~~~i~~l 345 (390)
+.. .+.++. ...+|+. .+.|+.+|.-.|-+..+|+.+ -.-.|.+|-. +.|+++..+...
T Consensus 195 ~~l~~~~~~~~l~~H~--Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~GN~---~~E~lv~~l~~~ 264 (302)
T 2ftp_A 195 EAVASEVPRERLAGHF--HDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNV---ASEDVLYLLNGL 264 (302)
T ss_dssp HHHTTTSCGGGEEEEE--BCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBCBC---BHHHHHHHHHHT
T ss_pred HHHHHhCCCCeEEEEe--CCCccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCCCCh---hHHHHHHHHHhc
Confidence 542 233332 3345654 678999999999988888876 1222223311 567777777654
No 288
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=20.49 E-value=2.9e+02 Score=21.08 Aligned_cols=106 Identities=12% Similarity=0.133 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCCCcchhHHHHHHHHHHHHcCCCCcEEEecCCChHHHHHHHHh--cceEEeCCC-CCCCCccHHhhhh--
Q psy12587 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKF--CHCIIYTPS-NEHFGIVPIEAMF-- 305 (390)
Q Consensus 231 ~~l~i~G~~~~~~~~~~~y~~~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~--adv~v~ps~-~e~~~~~~~Ea~a-- 305 (390)
.++.++.+.+ .....+.......|. .|.. .-+..+....+.. .|++++-.. .+.-|..+++.+.
T Consensus 3 ~~ilivdd~~-------~~~~~l~~~L~~~g~--~v~~--~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~ 71 (225)
T 1kgs_A 3 VRVLVVEDER-------DLADLITEALKKEMF--TVDV--CYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRES 71 (225)
T ss_dssp CEEEEECSSH-------HHHHHHHHHHHHTTC--EEEE--ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred ceEEEEeCCH-------HHHHHHHHHHHHCCC--EEEE--ECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4566666543 233556666666543 2332 2344444455543 577776433 2334455555443
Q ss_pred -cCCCEEEec-CC---CcccceecCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 -CKRPVIAVN-SG---GPKESVVDGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 -~G~pvi~~~-~~---~~~e~i~~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
..+|+|.-. .. ...+.+..|..+++..+ +.+++..++..++.
T Consensus 72 ~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 72 GVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp TCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 468887743 22 22344566778999999 99999999988764
No 289
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.24 E-value=1.2e+02 Score=19.18 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=25.8
Q ss_pred cCCCEEEecCCCccccee--------cCcceeeecC-CHHHHHHHHHHHhc
Q psy12587 306 CKRPVIAVNSGGPKESVV--------DGRTGFLCES-NEEAFAKAMKKIVD 347 (390)
Q Consensus 306 ~G~pvi~~~~~~~~e~i~--------~~~~g~~~~~-~~~~l~~~i~~l~~ 347 (390)
.|+|.++.-.|+...-+. +|..--+... |++++.+.+.+++.
T Consensus 50 ngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflk 100 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLK 100 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHH
Confidence 688888876655432221 2322223445 99999998888764
No 290
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=20.09 E-value=2.9e+02 Score=20.93 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=63.2
Q ss_pred EEEEeecccccCCHHHH-HHHHHHHHhhcccccccceEEEEEcCCCCCCcc-hhHHHHHHHHHHHHcCCCCcEEEecCCC
Q psy12587 196 VFLSINRYERKKNLELA-IYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIE-NVEYYKELGVLVKKLKLSDNVLFLTSPS 273 (390)
Q Consensus 196 ~i~~~g~~~~~K~~~~l-l~a~~~l~~~~~~~~~~~~~l~i~G~~~~~~~~-~~~y~~~~~~~~~~~~l~~~v~~~g~~~ 273 (390)
.|++.|. .|+|.+ .+++..+++.+|+ ++|.++=........ ++.....+..+... .+.|..+...+
T Consensus 46 ~~isgga----~G~D~~aae~vl~lk~~y~~-----i~L~~v~Pf~~~~~~w~~~~~~~y~~ll~~---aD~v~~l~~~~ 113 (181)
T 2nx2_A 46 WILISGQ----LGVELWAAEAAYDLQEEYPD-----LKVAVITPFYEQEKNWKEPNKEQYEAVLAQ---ADYEASLTHRP 113 (181)
T ss_dssp EEEECCC----TTHHHHHHHHHHTTTTTCTT-----CEEEEEESSBCTTTTSCHHHHHHHHHHHHH---CSEEEESSSSB
T ss_pred EEEECCC----ccHHHHHHHHHHHhccccCC-----ceEEEEecccchhhCCCHHHHHHHHHHHHh---CCeEEecccCC
Confidence 4444444 577764 6778888878775 888777653322110 11222334444443 35666655544
Q ss_pred h---HHH----HHHHHhcceEEeCCCCCCCCcc--HHh-hhhc----CCCEEEecCCCcccceec
Q psy12587 274 D---AAK----ISLFKFCHCIIYTPSNEHFGIV--PIE-AMFC----KRPVIAVNSGGPKESVVD 324 (390)
Q Consensus 274 ~---~e~----~~~~~~adv~v~ps~~e~~~~~--~~E-a~a~----G~pvi~~~~~~~~e~i~~ 324 (390)
. ..+ ..++..||.++.-...+.-|.+ .++ |... |.||..-+..++.+++++
T Consensus 114 y~~~~~~~~rn~~mvd~sD~liavyDg~~~GgT~~~v~~A~~~~~~~~~pv~~I~~~~l~~~~~~ 178 (181)
T 2nx2_A 114 YESPLQFKQKNQFFIDKSDGLLLLYDPEKEGSPKYMLGTAEKRREQDGYPIYFITMDDLRVTVEE 178 (181)
T ss_dssp CCCHHHHHHHHHHHHHHSSEEEEECCTTTCCTTHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCCEEEEEEcCCCCCCHHHHHHHHHHhccccCCeEEEEcHHHHHHHHhc
Confidence 2 221 3467789987765443322222 333 3333 799888776666665543
Done!