RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12587
(390 letters)
>gnl|CDD|99977 cd03805, GT1_ALG2_like, This family is most closely related to the
GT1 family of glycosyltransferases. ALG2, a
1,3-mannosyltransferase, in yeast catalyzes the
mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate
and Man(1)GlcNAc(2)-dolichol diphosphate to form
Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of
this enzyme causes an abnormal accumulation of
Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol,
which is associated with a type of congenital disorders
of glycosylation (CDG), designated CDG-Ii, in humans.
Length = 392
Score = 485 bits (1251), Expect = e-172
Identities = 192/363 (52%), Positives = 249/363 (68%), Gaps = 14/363 (3%)
Query: 22 TTAHD--HCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYV-AWYSEKPD 78
T+ HD HCF+ETKDGTLPV+V GDWLPR+IFG+F+ LC YLRM+ +ALY+ EK D
Sbjct: 37 TSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRMLYLALYLLLLPDEKYD 96
Query: 79 LVFCDLVSICIPILQAKQF---KVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCK 135
+ D VS C+P+L K F K+LFYCH+PDQLL+++GS LK +YR P + LEE+TT
Sbjct: 97 VFIVDQVSACVPLL--KLFSPSKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGM 154
Query: 136 ADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDI 195
ADKIVVNS FT SV + TF SL +++YP V T+ E T+ +P +L P GK
Sbjct: 155 ADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGLLIPKSGK--K 212
Query: 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGV 255
FLSINR+ERKKN+ LAI + L+ +L++ +V+LV+AGGYDP ENVEY +EL
Sbjct: 213 TFLSINRFERKKNIALAIEAFAILKDKLAE--FKNVRLVIAGGYDPRVAENVEYLEELQR 270
Query: 256 LVKKLK-LSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314
L ++L L D V+FL S SD+ K L ++YTPSNEHFGIVP+EAM+ +PVIA N
Sbjct: 271 LAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACN 330
Query: 315 SGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFS 374
SGGP E+VVDG TGFLCE E FA+AM K+ ND ++ + G R EKFS +AF+
Sbjct: 331 SGGPLETVVDGETGFLCEPTPEEFAEAMLKLA-NDPDLADRMGAAGRKRVKEKFSTEAFA 389
Query: 375 IQL 377
+L
Sbjct: 390 ERL 392
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the
GT1 family of glycosyltransferases and named after YqgM
in Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in certain bacteria and archaea.
Length = 374
Score = 144 bits (366), Expect = 1e-39
Identities = 82/352 (23%), Positives = 139/352 (39%), Gaps = 32/352 (9%)
Query: 22 TTAHDHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYSEKPDLVF 81
T E + G + V L L + LR ++ E+ D+V
Sbjct: 38 TPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRLLRR-------ERFDVVH 90
Query: 82 C-DLVSICIPILQAKQFKV--LFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADK 138
D +++ L A+ + + H + + + LE +AD+
Sbjct: 91 AHDWLALLAAALAARLLGIPLVLTVHGLE---FGRPGNELGLLLKLARALERRALRRADR 147
Query: 139 IVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFL 198
I+ SE T+ ++ K + ++ V TE + P P +++ V L
Sbjct: 148 IIAVSEATREELRELGGVPPEK-ITVIPNGVDTE---RFRPAPRAARRRLGIPEDEPVIL 203
Query: 199 SINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVK 258
+ R +K ++L + +L LR D V+LV+ G +EL L
Sbjct: 204 FVGRLVPRKGVDLLLEALAKLRKEYPD-----VRLVIVGDG--------PLREELEALAA 250
Query: 259 KLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGP 318
+L L D V FL D +L+ + E FG+V +EAM PV+A + GG
Sbjct: 251 ELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGI 310
Query: 319 KESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFS 369
E V DG TG L + EA A+A+ +++D D + ++ + R E+FS
Sbjct: 311 PEVVEDGETGLLVPPGDPEALAEAILRLLD-DPELRRRLGEAARERVAERFS 361
>gnl|CDD|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer
membrane].
Length = 381
Score = 130 bits (326), Expect = 4e-34
Identities = 83/343 (24%), Positives = 144/343 (41%), Gaps = 24/343 (6%)
Query: 47 PRNIFGKFYALCMYLRMIVIALYVAWYSEKPDLVFCDLVSICIPILQAKQFKVLFYCHYP 106
+ + L + L + + Y ++ L L+++ + L V + P
Sbjct: 62 LLIVRLRPALLRLLLLLKRLLPYDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIP 121
Query: 107 DQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILY 166
LL + L + R L +L++ AD+++ S K +++A + ++
Sbjct: 122 RILLLPRLLLLLGLLRLLLKRLKKALRLLADRVIAVSPALKELLEALGV---PNKIVVIP 178
Query: 167 PSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDE 226
+ TE + LP V L + R + +K L+L I + L+ R D
Sbjct: 179 NGIDTEKFAP-------ARIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPD- 230
Query: 227 MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHC 286
+KLV+ G E +EL L KKL L DNV FL D L
Sbjct: 231 ----IKLVIVGDGP-------ERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADV 279
Query: 287 IIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCE-SNEEAFAKAMKKI 345
+ +E FG+V +EAM PVIA + GG E V DG TG L + E A A++++
Sbjct: 280 FVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGDVEELADALEQL 339
Query: 346 VDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388
+++ + ++ + R E+FS++ + QL + +L +K
Sbjct: 340 LEDP-ELREELGEAARERVEEEFSWERIAEQLLELYEELLAEK 381
>gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
Mutations in this domain of human PIGA lead to disease
(Paroxysmal Nocturnal haemoglobinuria). Members of this
family transfer activated sugars to a variety of
substrates, including glycogen, Fructose-6-phosphate and
lipopolysaccharides. Members of this family transfer
UDP, ADP, GDP or CMP linked sugars. The eukaryotic
glycogen synthases may be distant members of this
family.
Length = 158
Score = 113 bits (286), Expect = 2e-30
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKE 252
+ + L + R +K L+L + + L+ + + +KLV+ G E K+
Sbjct: 1 DKPIILFVGRLVPEKGLDLLLEAFALLKEQHPN-----LKLVIVGD--------GEEEKK 47
Query: 253 LGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312
L L KL L DNV+F+ D I L++ + E FG+V +EAM PVIA
Sbjct: 48 LKKLALKLGLEDNVIFVGFVPDEDLIELYRIADLFVLPSRYEGFGLVLLEAMAAGVPVIA 107
Query: 313 VNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349
+ GGP E V DG TG L + + EA A+A++K++ ++
Sbjct: 108 TDVGGPAEIVKDGETGLLVDPGDAEALAEAIEKLLKDE 145
>gnl|CDD|99976 cd03804, GT1_wbaZ_like, This family is most closely related to the
GT1 family of glycosyltransferases. wbaZ in Salmonella
enterica has been shown to possess the mannosyl
transferase activity. The members of this family are
found in certain bacteria and Archaea.
Length = 351
Score = 116 bits (293), Expect = 2e-29
Identities = 81/294 (27%), Positives = 114/294 (38%), Gaps = 75/294 (25%)
Query: 100 LFYCHYP--------DQLLSKQGSFLKSIYRFPLNKLEEWTTCKA---DKIVVNSEFTKS 148
+ YCH P L + G + R L+ L W A D + NS F
Sbjct: 107 ICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSAARVDYFIANSRFVAR 166
Query: 149 VVQATFRSLDHKCL----DILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINR-- 202
++ K ++YP V T+ P KED +LS+ R
Sbjct: 167 RIK--------KYYGRDATVIYPPVDTDRFT------------PAEEKEDY-YLSVGRLV 205
Query: 203 -YERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLK 261
Y K ++LAI + N L +LVV G G + +L+
Sbjct: 206 PY---KRIDLAIEAFNKLG----------KRLVVIGD---------------GPELDRLR 237
Query: 262 --LSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPK 319
NV FL SD L+ ++ E FGIVP+EAM PVIA GG
Sbjct: 238 AKAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKGGAL 296
Query: 320 ESVVDGRTGFL-CESNEEAFAKAMKKIVDN---DGNIIQQFS-QFGFNRFNEKF 368
E+V+DG TG L E E+ A A+++ N D I+ + +F +RF EK
Sbjct: 297 ETVIDGVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHAERFSESRFREKI 350
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the
GT1 family of glycosyltransferases. wlbH in Bordetella
parapertussis has been shown to be required for the
biosynthesis of a trisaccharide that, when attached to
the B. pertussis lipopolysaccharide (LPS) core (band B),
generates band A LPS.
Length = 377
Score = 113 bits (284), Expect = 4e-28
Identities = 71/368 (19%), Positives = 134/368 (36%), Gaps = 46/368 (12%)
Query: 24 AHDHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRMIVIALYVAWYSEKPDLVFCD 83
+ G L L + L L + + +PDL+
Sbjct: 41 PWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLKRFRPDLIHAH 100
Query: 84 LVS----ICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKI 139
+ + ++ H D L + L+++ R L + AD +
Sbjct: 101 FAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRR--------ADAV 152
Query: 140 VVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLS 199
+ SE ++A +D + + ++ V E+ +P ++ V L
Sbjct: 153 IAVSEALADELKALG--IDPEKVTVIPNGV---DTERFSPADRAEARKLGLPEDKKVILF 207
Query: 200 INRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKK 259
+ R +K ++ I +L L + D V LV+ G + + L L +
Sbjct: 208 VGRLVPRKGIDYLIEALARLLKKRPD-----VHLVIVG--------DGPLREALEALAAE 254
Query: 260 LKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGP 318
L L D V FL + + + + PS E FG+V +EAM C PV+A + GG
Sbjct: 255 LGLEDRVTFLGAVPHEEVPAYYAAADVFVL-PSLREGFGLVLLEAMACGLPVVATDVGGI 313
Query: 319 KESVVDGRTGFLCES-NEEAFAKAMKKIVDN-----DGNIIQQFSQFGFNRFNEKFSFQA 372
E + DG G L + EA A+A+ +++ + ++ + E+FS++
Sbjct: 314 PEIITDGENGLLVPPGDPEALAEAILRLLADPWLRLGRAARRRVA--------ERFSWEN 365
Query: 373 FSIQLNTI 380
+ +L +
Sbjct: 366 VAERLLEL 373
>gnl|CDD|99978 cd03806, GT1_ALG11_like, This family is most closely related to the
GT1 family of glycosyltransferases. ALG11 in yeast is
involved in adding the final 1,2-linked Man to the
Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of
the ER. The deletion analysis of ALG11 was shown to
block the early steps of core biosynthesis that takes
place on the cytoplasmic face of the ER and lead to a
defect in the assembly of lipid-linked oligosaccharides.
Length = 419
Score = 111 bits (279), Expect = 3e-27
Identities = 84/345 (24%), Positives = 148/345 (42%), Gaps = 59/345 (17%)
Query: 64 IVIALYVAWYSEKPDLVFCD---------LVSICIPILQAKQFKVLFYCHYP-------D 107
+++ L A PD +F D LV + V Y HYP
Sbjct: 96 MILGLE-ALLKLVPD-IFIDTMGYPFTYPLVRLLGGC------PVGAYVHYPTISTDMLQ 147
Query: 108 QLLSKQGSF--------------LKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQAT 153
++ S++ S+ K +Y L AD ++VNS +T++ +++
Sbjct: 148 KVRSREASYNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSL 207
Query: 154 FRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAI 213
++ + I+YP E L K L + LSI ++ +KN L +
Sbjct: 208 WKR--NTKPSIVYPPCDVEELLK---------LPLDEKTRENQILSIAQFRPEKNHPLQL 256
Query: 214 YSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPS 273
+ L RL +E+K +KLV+ G N ++ + ++L +L K+L L D V F+ +
Sbjct: 257 RAFAKLLKRLPEEIKEKIKLVLIGSC--RNEDDEKRVEDLKLLAKELGLEDKVEFVVNAP 314
Query: 274 DAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVV----DGRTGF 329
+ ++T NEHFGI +E M +A SGGP +V G TGF
Sbjct: 315 FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGF 374
Query: 330 LCESNEEAFAKAMKKIV---DNDGNIIQQFSQFGFNRFNEKFSFQ 371
L + EE +A+A++KI+ + + I++ ++ RF+++ +
Sbjct: 375 LASTAEE-YAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEFER 418
>gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related
to the GT1 family of glycosyltransferases. The
sucrose-phosphate synthases in this family may be unique
to plants and photosynthetic bacteria. This enzyme
catalyzes the synthesis of sucrose 6-phosphate from
fructose 6-phosphate and uridine 5'-diphosphate-glucose,
a key regulatory step of sucrose metabolism. The
activity of this enzyme is regulated by phosphorylation
and moderated by the concentration of various
metabolites and light.
Length = 398
Score = 100 bits (252), Expect = 1e-23
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 15/186 (8%)
Query: 190 PGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEY 249
P K I+ + R + +K ++ I + L LV+ GG P +
Sbjct: 218 PDKPRILAVG--RLDPRKGIDTLIRAYAELPELRER-----ANLVIVGG--PRDDILAMD 268
Query: 250 YKELGVLVKKLKLSDNVLFL--TSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCK 307
+EL L ++L + D V F S D L++ + E FG+ +EAM C
Sbjct: 269 EEELRELARELGVIDRVDFPGRVSREDLPA--LYRAADVFVNPALYEPFGLTALEAMACG 326
Query: 308 RPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNE 366
PV+A GGP++ VVDG TG L + + EA A A+++++ + + ++ S+ G R
Sbjct: 327 LPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDP-ALRRRLSRAGLRRARA 385
Query: 367 KFSFQA 372
+++++
Sbjct: 386 RYTWER 391
>gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to the
GT1 family of glycosyltransferases. wbuB in E. coli is
involved in the biosynthesis of the O26 O-antigen. It
has been proposed to function as an
N-acetyl-L-fucosamine (L-FucNAc) transferase.
Length = 394
Score = 100 bits (251), Expect = 2e-23
Identities = 72/371 (19%), Positives = 129/371 (34%), Gaps = 42/371 (11%)
Query: 19 GPRTTAHDHCFKETKDGTLPVKVIGDWLP--RNIFGKFYALCMYLRMIVIALYVAWYSEK 76
P + +E DG V+V LP + L + L + +
Sbjct: 43 YPSGKIYKGYKREEVDG---VRVHRVPLPPYKKNGLLKRLLNYLSFALSALLALLKRRRR 99
Query: 77 PDLVFC--DLVSICIPILQAKQF---KVLFYCH--YPDQLLSKQGSFLKSIYRFPLNKLE 129
PD++ + I + L + + +P+ ++ S+ L KLE
Sbjct: 100 PDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLE 159
Query: 130 EWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPL 189
+AD IVV S + + R + + + ++ V E + + L
Sbjct: 160 RLIYRRADAIVVISPGMREYLVR--RGVPPEKISVIPNGVDLELFKPPPADESLRKELGL 217
Query: 190 PGKEDIVFL-SINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAG-GYDPHNIENV 247
K +++ +I R + L+ + + L+ R ++ ++ G G
Sbjct: 218 DDKFVVLYAGNIGRAQ---GLDTLLEAAALLKDR------PDIRFLIVGDG--------- 259
Query: 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYT--PSNEHFGIVP---IE 302
+EL L K L L DNV FL L + P G+ P E
Sbjct: 260 PEKEELKELAKALGL-DNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFE 318
Query: 303 AMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGF 361
M +PV+A G E V + G + + EA A A+ +++D+ + + G
Sbjct: 319 YMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDDP-EERAEMGENGR 377
Query: 362 NRFNEKFSFQA 372
EKFS +
Sbjct: 378 RYVEEKFSREK 388
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 96.9 bits (241), Expect = 2e-23
Identities = 57/225 (25%), Positives = 86/225 (38%), Gaps = 20/225 (8%)
Query: 108 QLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYP 167
+ L+++G ++ + L L K D + + + + L + L I
Sbjct: 24 KALARRGHEVEVVALLLLLLLRILRGFKPDVVHAHGYYPAPL----ALLLAARLLGIPLV 79
Query: 168 SVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEM 227
++L G D VF+ R +K L+ I + L+ R D
Sbjct: 80 LTVHGVNRSLLEGVPLSLLALSIGLADKVFVG--RLAPEKGLDDLIEAFALLKERGPD-- 135
Query: 228 KTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTS-PSDAAKISLFKFCHC 286
+KLV+AG + L L+ L L D V+FL + L
Sbjct: 136 ---LKLVIAGDGPE--------REYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADV 184
Query: 287 IIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLC 331
+ E FG+V +EAM C PVIA + GGP E V DG TG L
Sbjct: 185 FVLPSLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229
>gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the
GT1 family of glycosyltransferases. WabH in Klebsiella
pneumoniae has been shown to transfer a GlcNAc residue
from UDP-GlcNAc onto the acceptor GalUA residue in the
cellular outer core.
Length = 353
Score = 99.3 bits (248), Expect = 3e-23
Identities = 74/333 (22%), Positives = 123/333 (36%), Gaps = 46/333 (13%)
Query: 45 WLPRNIFGKFYALCMYLRMIVIALYVAWYSEKPDLVFC---DLVSICIPILQAKQFKVLF 101
L A+ R++ EKPD+V ++ + K++
Sbjct: 58 VLKLKSLRDLLAILRLRRLL--------RKEKPDVVISHLTTTPNVLALLAARLGTKLIV 109
Query: 102 YCH-YPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHK 160
+ H L ++ L I +ADKIV SE K + K
Sbjct: 110 WEHNSLSLELKRKLRLLLLIR---------KLYRRADKIVAVSEGVKEDLLKLLGIPPDK 160
Query: 161 CLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLR 220
++++Y + E + EP+E + V L++ R +K + I + LR
Sbjct: 161 -IEVIYNPIDIEEIRALAEEPLE----LGIPPDGPVILAVGRLSPQKGFDTLIRAFALLR 215
Query: 221 SRLSDEMKTHVKLVVAG-GYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKIS 279
D +LV+ G G +E L K+L L+D V FL S+
Sbjct: 216 KEGPD-----ARLVILGDGPLREELEA---------LAKELGLADRVHFLGFQSNPYPY- 260
Query: 280 LFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAF 338
K + + E F V +EAM PV+A + GP+E + DG G L +E A
Sbjct: 261 -LKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPREILEDGENGLLVPVGDEAAL 319
Query: 339 AKAMKKIVDN--DGNIIQQFSQFGFNRFNEKFS 369
A A ++D D + ++ + R ++S
Sbjct: 320 AAAALALLDLLLDPELRERLAAAARERVAREYS 352
>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the
GT1 family of glycosyltransferases. cap1E in
Streptococcus pneumoniae is required for the synthesis
of type 1 capsular polysaccharides.
Length = 359
Score = 93.8 bits (234), Expect = 2e-21
Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 25/201 (12%)
Query: 188 PLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENV 247
++D VFL + R + K ++ + + L+++ +V+L++ G D N
Sbjct: 182 EPIPEDDPVFLFVARLLKDKGIDELLEAARILKAK-----GPNVRLLLVGDGDEEN---- 232
Query: 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN-EHFGIVPIEAMFC 306
L ++KL L V FL D L + PS E V +EAM
Sbjct: 233 -PAAIL--EIEKLGLEGRVEFLGFRDDVP--ELLAAADVFVL-PSYREGLPRVLLEAMAM 286
Query: 307 KRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFN 365
RPVIA + G +E+V+DG GFL + EA A A+++++++ + + Q R
Sbjct: 287 GRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDP-ELRARMGQAARKRAE 345
Query: 366 EKFSFQAFSIQLNTIVNNMLD 386
E+F + +V +L+
Sbjct: 346 EEFDEEI-------VVKKLLE 359
>gnl|CDD|99981 cd03809, GT1_mtfB_like, This family is most closely related to the
GT1 family of glycosyltransferases. mtfB
(mannosyltransferase B) in E. coli has been shown to
direct the growth of the O9-specific polysaccharide
chain. It transfers two mannoses into the position 3 of
the previously synthesized polysaccharide.
Length = 365
Score = 92.4 bits (230), Expect = 8e-21
Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 23/237 (9%)
Query: 135 KADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKED 194
+AD I+ SE TK + K + ++ V P VL L
Sbjct: 140 RADAIITVSEATKRDLLRYLGVPPDK-IVVIPLGV---DPRFRPPPAEAEVLRALYLLPR 195
Query: 195 IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELG 254
FL + E +KNLE + + L ++ D KLV+ G N E + +ELG
Sbjct: 196 PYFLYVGTIEPRKNLERLLEAFARLPAKGPD-----PKLVIVGKRGWLNEELLARLRELG 250
Query: 255 VLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAV 313
L D V FL SD +L++ ++ PS E FG+ +EAM C PVIA
Sbjct: 251 -------LGDRVRFLGYVSDEELAALYRGARAFVF-PSLYEGFGLPVLEAMACGTPVIAS 302
Query: 314 NSGGPKESVVDGRTGFLCE-SNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFS 369
N E V G + + EA A A+++++++ + ++ + G R ++FS
Sbjct: 303 NISSLPE-VA-GDAALYFDPLDPEALAAAIERLLEDPA-LREELRERGLARA-KRFS 355
>gnl|CDD|99969 cd03795, GT1_like_4, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP-linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria and eukaryotes.
Length = 357
Score = 91.1 bits (227), Expect = 2e-20
Identities = 69/272 (25%), Positives = 102/272 (37%), Gaps = 42/272 (15%)
Query: 112 KQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSE--FTKSVVQATFRSLDHKCLDILYPSV 169
KQ LK +YR PL + +AD IV S S V FR K V
Sbjct: 119 KQKLLLK-LYR-PL---QRRFLRRADAIVATSPNYAETSPVLRRFR---DKV------RV 164
Query: 170 YTEGLEKTT-PEPIENVLNPLPGKED-IVFLSINRYERKKNLELAIYSLNSLRSRLSDEM 227
GL+ P P FL + R K L++ + + +L
Sbjct: 165 IPLGLDPARYPRPDALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALPD------ 218
Query: 228 KTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCI 287
LV+ G EL L L L D V FL D K +L C
Sbjct: 219 ---APLVIVG--------EGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVF 267
Query: 288 IYTPSNEH---FGIVPIEAMFCKRPVIAVNSGGPKESVV-DGRTGFLCE-SNEEAFAKAM 342
++ PS E FGIV +EAM +PVI+ G V G TG + + A A+A+
Sbjct: 268 VF-PSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAI 326
Query: 343 KKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFS 374
++++++ + ++ + R E+F+
Sbjct: 327 RRLLEDP-ELRERLGEAARERAEEEFTADRMV 357
>gnl|CDD|99989 cd03819, GT1_WavL_like, This family is most closely related to the
GT1 family of glycosyltransferases. WavL in Vibrio
cholerae has been shown to be involved in the
biosynthesis of the lipopolysaccharide core.
Length = 355
Score = 88.1 bits (219), Expect = 2e-19
Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 31/223 (13%)
Query: 135 KADKIVVNSEFTKSVVQATFRSLDHKC----LDILY----PSVYTEGLEKTTPEPIENVL 186
+ D+++ S F ++ ++ + ++ + G PE I +
Sbjct: 124 RGDRVIAVSNFIADHIRE-----NYGVDPDRIRVIPRGVDLDRFDPG--AVPPERILALA 176
Query: 187 NPLPGKEDIVFLSI-NRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIE 245
P + + + R R K E+ I +L L+ D V L++ G
Sbjct: 177 REWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPD-----VHLLIVGDAQGRR-- 229
Query: 246 NVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEH--FGIVPIEA 303
YY EL L+K+L L D V F+ SD + ++ + S E FG +EA
Sbjct: 230 --FYYAELLELIKRLGLQDRVTFVGHCSDMPAA--YALADIVV-SASTEPEAFGRTAVEA 284
Query: 304 MFCKRPVIAVNSGGPKESVVDGRTGFLCESN-EEAFAKAMKKI 345
RPVIA + GG +E+V G TG L EA A+A+ +I
Sbjct: 285 QAMGRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQI 327
>gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the
GT1 family of glycosyltransferases.
UDP-glucose-diacylglycerol glucosyltransferase (UGDG;
also known as 1,2-diacylglycerol 3-glucosyltransferase)
catalyzes the transfer of glucose from UDP-glucose to
1,2-diacylglycerol forming
3-D-glucosyl-1,2-diacylglycerol.
Length = 374
Score = 88.1 bits (219), Expect = 2e-19
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 174 LEKTTPEPIENVLNPLPGKED-IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVK 232
L++ P ++ L ED V L + R ++KN++ I + L D VK
Sbjct: 181 LDRFEPVDGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPD-----VK 235
Query: 233 LVVAG-GYDPHNIENVEYYKELGVLVKKLKLSDNVLFL--TSPSDAAKISLFKFCHCIIY 289
LV+ G G + +E L ++L L+D V+F + + ++
Sbjct: 236 LVIVGDGPEREELEE---------LARELGLADRVIFTGFVPREELPDY----YKAADLF 282
Query: 290 -TPSN-EHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD 347
S E G+V +EAM PV+AV++ G + V DG GFL +EA A+A+ +++
Sbjct: 283 VFASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDEALAEALLRLLQ 342
Query: 348 ND 349
+
Sbjct: 343 DP 344
>gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the
GT1 family of glycosyltransferases. AmSD in Erwinia
amylovora has been shown to be involved in the
biosynthesis of amylovoran, the acidic exopolysaccharide
acting as a virulence factor. This enzyme may be
responsible for the formation of galactose alpha-1,6
linkages in amylovoran.
Length = 348
Score = 84.6 bits (210), Expect = 3e-18
Identities = 70/313 (22%), Positives = 119/313 (38%), Gaps = 72/313 (23%)
Query: 60 YLRMIVIALYVAWYSEKPDLV--FCDLVSICIPILQAKQFKVLFYCH-YPDQLLSKQGSF 116
LR ++ + KPD+V F + + L K K++ H PD +
Sbjct: 74 RLRKLLK-------NNKPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRL 126
Query: 117 L--KSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGL 174
L + +YR AD +VV +E + A + +K + ++ +
Sbjct: 127 LLRRLLYRR------------ADAVVVLTEEDR----ALYYKKFNKNVVVIPNPL----- 165
Query: 175 EKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLV 234
P P E + L K L++ R +K +L I + + + D KL
Sbjct: 166 ----PFPPEEPSSDLKSK---RILAVGRLVPQKGFDLLIEAWAKIAKKHPD-----WKLR 213
Query: 235 VAG-GYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSD------AAKISLFKFCHCI 287
+ G G + L L+K+L L D V+ L + A I +
Sbjct: 214 IVGDG---------PEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVL------ 258
Query: 288 IYTPSNEHFGIVPIEAMFCKRPVIAVN-SGGPKESVVDGRTGFLCE-SNEEAFAKAMKKI 345
T E F +V +EAM PVI+ + GP E + DG G L + EA A+A+ ++
Sbjct: 259 --TSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRL 316
Query: 346 VDNDGNIIQQFSQ 358
+ D + ++
Sbjct: 317 M-EDEELRKRMGA 328
>gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the
GT1 family of glycosyltransferases. Bme6 in Brucella
melitensis has been shown to be involved in the
biosynthesis of a polysaccharide.
Length = 375
Score = 83.9 bits (208), Expect = 8e-18
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 22/201 (10%)
Query: 186 LNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIE 245
LP K I+FL R KK L+L I + ++L++ LV+AG D
Sbjct: 197 FPILPDKRIILFLG--RLHPKKGLDLLIEAF----AKLAERFP-DWHLVIAG-PDEG--- 245
Query: 246 NVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMF 305
Y EL + L L D V F K + + +E+FGIV EA+
Sbjct: 246 --GYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALA 303
Query: 306 CKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFN 365
C PV+ + +E +++ G++ + + +A A A+++ ++ ++ + G
Sbjct: 304 CGTPVVTTDKVPWQE-LIEYGCGWVVDDDVDALAAALRRALELP-QRLKAMGENGRALVE 361
Query: 366 EKFSFQAFSIQLNTIVNNMLD 386
E+FS+ A I +L+
Sbjct: 362 ERFSWTA-------IAQQLLE 375
>gnl|CDD|215511 PLN02949, PLN02949, transferase, transferring glycosyl groups.
Length = 463
Score = 80.2 bits (198), Expect = 2e-16
Identities = 77/314 (24%), Positives = 131/314 (41%), Gaps = 45/314 (14%)
Query: 98 KVLFYCHYP-------------------DQLLSKQG--SFLKSIYRFPLNKLEEWTTCKA 136
KV+ Y HYP D +++ S K +Y + A
Sbjct: 162 KVVCYTHYPTISSDMISRVRDRSSMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCA 221
Query: 137 DKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKED-I 195
+VNS +TKS ++A +R + + +YP T GL+ PL ED
Sbjct: 222 HLAMVNSSWTKSHIEALWRIPER--IKRVYPPCDTSGLQAL----------PLERSEDPP 269
Query: 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGV 255
+S+ ++ +K L + + +L ++ KL G N E+ E ++L
Sbjct: 270 YIISVAQFRPEKAHALQLEAFALALEKLDADVP-RPKLQFVGSC--RNKEDEERLQKLKD 326
Query: 256 LVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS 315
K+L L +V F + S + L +++ +EHFGI +E M IA NS
Sbjct: 327 RAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNS 386
Query: 316 GGPKESVV----DGRTGFLCESNEEAFAKAMKKIV---DNDGNIIQQFSQFGFNRFNEKF 368
GPK +V +TGFL + EE +A A+ +++ + + I ++ NRF+E+
Sbjct: 387 AGPKMDIVLDEDGQQTGFLATTVEE-YADAILEVLRMRETERLEIAAAARKRANRFSEQR 445
Query: 369 SFQAFSIQLNTIVN 382
+ F + I+N
Sbjct: 446 FNEDFKDAIRPILN 459
>gnl|CDD|99975 cd03802, GT1_AviGT4_like, This family is most closely related to
the GT1 family of glycosyltransferases. aviGT4 in
Streptomyces viridochromogenes has been shown to be
involved in biosynthesis of oligosaccharide antibiotic
avilamycin A. Inactivation of aviGT4 resulted in a
mutant that accumulated a novel avilamycin derivative
lacking the terminal eurekanate residue.
Length = 335
Score = 78.8 bits (195), Expect = 2e-16
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 21/157 (13%)
Query: 190 PGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEY 249
P + ++FL R +K LAI + +R + + L +AG + +
Sbjct: 169 PKGDYLLFLG--RISPEKGPHLAIRA-----ARRAG-----IPLKLAGPV--SDPDYFYR 214
Query: 250 YKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKR 308
+L ++ +L A K L +++ E FG+V IEAM C
Sbjct: 215 EIA-----PELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGT 269
Query: 309 PVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKI 345
PVIA G E V DG TGFL + + E A A+ +
Sbjct: 270 PVIAFRRGAVPEVVEDGVTGFLVD-SVEELAAAVARA 305
>gnl|CDD|100002 cd04962, GT1_like_5, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria, while some of them are also found in
Archaea and eukaryotes.
Length = 371
Score = 74.6 bits (184), Expect = 1e-14
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 256 LVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS 315
L ++L L D+VLFL ++ + E FG+ +EAM C PV+A N+
Sbjct: 245 LARELGLQDDVLFLGKQDHVEEL--LSIADLFLLPSEKESFGLAALEAMACGVPVVASNA 302
Query: 316 GGPKESVVDGRTGFLCE-SNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFS 369
GG E V G TGFL + + EA A+ +++ D + Q+FS+ NR E+F
Sbjct: 303 GGIPEVVKHGETGFLVDVGDVEAMAEYALSLLE-DDELWQEFSRAARNRAAERFD 356
>gnl|CDD|234438 TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosaminyl L-malate
synthase BshA. Members of this protein family are BshA,
a glycosyltransferase required for bacillithiol
biosynthesis. This enzyme combines UDP-GlcNAc and
L-malate to form N-acetyl-alpha-D-glucosaminyl L-malate
synthase. Bacillithiol is a low-molecular-weight thiol,
an analog of glutathione and mycothiol, and is found
largely in the Firmicutes [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 374
Score = 74.6 bits (184), Expect = 1e-14
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 12/119 (10%)
Query: 256 LVKKLKLSDNVLFLTSPSDAAKI----SLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVI 311
LV++L L+D VLFL D A++ LF + E FG+ +EAM C PVI
Sbjct: 247 LVRELGLTDRVLFLGKQDDVAELLSISDLF------LLPSEKESFGLAALEAMACGVPVI 300
Query: 312 AVNSGGPKESVVDGRTGFLCE-SNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFS 369
A N+GG E V G TGFLC+ + E A+ ++ D ++Q+FS R E+F
Sbjct: 301 ASNAGGIPEVVEHGVTGFLCDVGDVETMAEYAISLL-EDEELLQRFSAAARERAKERFD 358
>gnl|CDD|100000 cd04951, GT1_WbdM_like, This family is most closely related to the
GT1 family of glycosyltransferases and is named after
WbdM in Escherichia coli. In general
glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
bacteria.
Length = 360
Score = 70.4 bits (173), Expect = 2e-13
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAG-GYDPHNIENVEYYKE 252
V L++ R K+ + + L +KL++AG G +E
Sbjct: 188 TFVILAVGRLVEAKDYPNLLKAFAKL-----LSDYLDIKLLIAGDGPLRATLER------ 236
Query: 253 LGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA 312
L+K L LS+ V L D A + + + + E FG+V EAM C+ PV+A
Sbjct: 237 ---LIKALGLSNRVKLLGLRDDIAA--YYNAADLFVLSSAWEGFGLVVAEAMACELPVVA 291
Query: 313 VNSGGPKESVVDGRTGFLCE-SNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFN--EKFS 369
++GG +E V D +G + S+ EA A + +I+ G ++ G R +KFS
Sbjct: 292 TDAGGVREVVGD--SGLIVPISDPEALANKIDEILKMSG---EERDIIGARRERIVKKFS 346
Query: 370 FQAFSIQLNTIVNNMLDK 387
+N+IV L
Sbjct: 347 -------INSIVQQWLTL 357
>gnl|CDD|99985 cd03814, GT1_like_2, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria and eukaryotes.
Length = 364
Score = 66.9 bits (164), Expect = 3e-12
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 283 FCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCE-SNEEAFAK 340
F PS E FG+V +EAM PV+A ++GGP + V DG G L E + EAFA
Sbjct: 270 FVF-----PSRTETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAA 324
Query: 341 AMKKIVDND 349
A+ ++ +
Sbjct: 325 ALAALLADP 333
>gnl|CDD|100003 cd05844, GT1_like_7, Glycosyltransferases catalyze the transfer of
sugar moieties from activated donor molecules to
specific acceptor molecules, forming glycosidic bonds.
The acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 367
Score = 65.0 bits (159), Expect = 1e-11
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 22/169 (13%)
Query: 190 PGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAG-GYDPHNIENVE 248
P + L + R+ KK L + + L R+ + V+LV+ G G P
Sbjct: 184 PARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPE-----VRLVIIGDG--P------- 229
Query: 249 YYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK----FCHCIIYTPSN--EHFGIVPIE 302
L L + L L V FL + A L + F + PS E +V +E
Sbjct: 230 LLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLE 289
Query: 303 AMFCKRPVIAVNSGGPKESVVDGRTGFLC-ESNEEAFAKAMKKIVDNDG 350
A PV+A GG E+V DG TG L E + A A A+ +++ +
Sbjct: 290 AQASGVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPD 338
>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the
GT1 family of glycosyltransferases. WbnK in Shigella
dysenteriae has been shown to be involved in the type 7
O-antigen biosynthesis.
Length = 365
Score = 62.6 bits (153), Expect = 7e-11
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 20/183 (10%)
Query: 192 KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAG-GYDPHNIENVEYY 250
++ + + R +K+ + + L + + +L++ G G D N+E +
Sbjct: 191 EDTFLIGIVARLHPQKDHATLLRAAALLL-----KKFPNARLLLVGDGPDRANLELLAL- 244
Query: 251 KELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPV 310
K+L L D V+ L SD + + + +E F V +EAM C PV
Sbjct: 245 -------KELGLEDKVILLGERSDVPAL--LNALDVFVLSSLSEGFPNVLLEAMACGLPV 295
Query: 311 IAVNSGGPKESVVDGRTGFLCE-SNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFS 369
+A + G E V D TGFL + EA A+A++ ++ D + Q + R E FS
Sbjct: 296 VATDVGDNAELVGD--TGFLVPPGDPEALAEAIEALL-ADPALRQALGEAARERIEENFS 352
Query: 370 FQA 372
+A
Sbjct: 353 IEA 355
>gnl|CDD|132490 TIGR03449, mycothiol_MshA, D-inositol-3-phosphate
glycosyltransferase. Members of this protein family,
found exclusively in the Actinobacteria, are MshA, the
glycosyltransferase of mycothiol biosynthesis. Mycothiol
replaces glutathione in these species.
Length = 405
Score = 62.4 bits (152), Expect = 1e-10
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 231 VKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYT 290
++++V GG + + EL +L ++D V FL + +++ ++
Sbjct: 253 LRVIVVGGPSGSGLATPDALIELAA---ELGIADRVRFLPPRPPEELVHVYRAAD-VVAV 308
Query: 291 PS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNE-EAFAKAMKKIVDN 348
PS NE FG+V +EA C PV+A GG +V DG TG L + ++ +A A+ +++D+
Sbjct: 309 PSYNESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDD 368
Query: 349 DG 350
Sbjct: 369 PR 370
>gnl|CDD|233748 TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family.
This model describes Corynebacterium glutamicum GlgA and
closely related proteins in several other species. This
enzyme is required for glycogen biosynthesis and appears
to replace the distantly related TIGR02095 family of
ADP-glucose type glycogen synthase in Corynebacterium
glutamicum, Mycobacterium tuberculosis, Bifidobacterium
longum, and Streptomyces coelicolor [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 388
Score = 61.0 bits (148), Expect = 3e-10
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 288 IYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESN-------EEAFAK 340
IY P GIV +EAM C PV+A +GG E VVDG TGFL + + AK
Sbjct: 289 IYEP----LGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAK 344
Query: 341 AMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQA 372
A+ ++ D + ++ G R E+FS+ +
Sbjct: 345 AINILLA-DPELAKKMGIAGRKRAEEEFSWGS 375
>gnl|CDD|215073 PLN00142, PLN00142, sucrose synthase.
Length = 815
Score = 59.6 bits (145), Expect = 1e-09
Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 37/211 (17%)
Query: 192 KEDIVFLSINRYERKKNLE--LAIYSLNS-LRSRLSDEMKTHVKLVVAGGY-DP---HNI 244
K+ I+F S+ R +R KNL + Y N LR E+ V LVV GG+ DP +
Sbjct: 572 KKPIIF-SMARLDRVKNLTGLVEWYGKNKRLR-----EL---VNLVVVGGFIDPSKSKDR 622
Query: 245 ENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAK-------ISLFK--FCHCIIYTPSNEH 295
E + K++ L++K L ++ + ++ + I+ K F +Y E
Sbjct: 623 EEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALY----EA 678
Query: 296 FGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVD------ND 349
FG+ +EAM C P A GGP E +VDG +GF + +A KI D D
Sbjct: 679 FGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHG--DEAANKIADFFEKCKED 736
Query: 350 GNIIQQFSQFGFNRFNEKFSFQAFSIQLNTI 380
+ + S G R E ++++ ++ +L T+
Sbjct: 737 PSYWNKISDAGLQRIYECYTWKIYAERLLTL 767
>gnl|CDD|99992 cd03822, GT1_ecORF704_like, This family is most closely related to
the GT1 family of glycosyltransferases. ORF704 in E.
coli has been shown to be involved in the biosynthesis
of O-specific mannose homopolysaccharides.
Length = 366
Score = 58.4 bits (142), Expect = 2e-09
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 200 INRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKK 259
+ Y K LEL + +L L ++ D V+L+VAG P + Y E L ++
Sbjct: 194 LRPY---KGLELLLEALPLLVAKHPD-----VRLLVAGETHP---DLERYRGEAYALAER 242
Query: 260 LKLSDNVLFLTSPSDAAKI-SLFKFCHCII-------YTPSNEHFGIVPIEAMFCKRPVI 311
L L+D V+F+ ++ LF ++ T S G++ A+ +PVI
Sbjct: 243 LGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQS----GVLAY-AIGFGKPVI 297
Query: 312 AVNSGGPKESVVDGRTGFLC-ESNEEAFAKAMKKIVDNDG 350
+ G E V+DG TG L + A A+A+++++ +
Sbjct: 298 STPVGHA-EEVLDGGTGLLVPPGDPAALAEAIRRLLADPE 336
>gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the
GT1 family of glycosyltransferases. ExpE7 in
Sinorhizobium meliloti has been shown to be involved in
the biosynthesis of galactoglucans (exopolysaccharide
II).
Length = 359
Score = 56.9 bits (138), Expect = 5e-09
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 291 PS--NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCE-SNEEAFAKAMKKIVD 347
PS E+F +V EA+ PVIA + GG E V DG G L + E A A+++++D
Sbjct: 269 PSIWPENFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLID 328
Query: 348 NDG 350
+
Sbjct: 329 DPD 331
>gnl|CDD|100001 cd04955, GT1_like_6, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
certain bacteria and Archaea.
Length = 363
Score = 56.1 bits (136), Expect = 1e-08
Identities = 52/286 (18%), Positives = 105/286 (36%), Gaps = 41/286 (14%)
Query: 89 IPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCK-ADKIVVNSEFTK 147
+P+L+ K KV+ + +K G K +F E K AD+++ +S K
Sbjct: 101 LPLLRLKGKKVVVNMDGLEWKRAKWGRPAKRYLKF-----GEKLAVKFADRLIADSPGIK 155
Query: 148 SVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKK 207
++ + + G + + +L + +L + R +
Sbjct: 156 EYLKEKYGR---------DSTYIPYGADHVVSSEEDEILKKYGLEPGRYYLLVGRIVPEN 206
Query: 208 NLELAI--YSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDN 265
N++ I +S + KLV+ G D N Y K L +K
Sbjct: 207 NIDDLIEAFSK----------SNSGKKLVIVGNAD----HNTPYGKLL---KEKAAADPR 249
Query: 266 VLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVP--IEAMFCKRPVIAVNSGGPKESVV 323
++F+ D + L ++ + Y + G P +EAM PV+A ++ +E +
Sbjct: 250 IIFVGPIYDQELLELLRY-AALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVLG 308
Query: 324 DGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFS 369
D F + A +++ ++ D + ++ R EK++
Sbjct: 309 DKAIYF---KVGDDLASLLEE-LEADPEEVSAMAKAARERIREKYT 350
>gnl|CDD|99972 cd03799, GT1_amsK_like, This is a family of GT1
glycosyltransferases found specifically in certain
bacteria. amsK in Erwinia amylovora, has been reported
to be involved in the biosynthesis of amylovoran, a
exopolysaccharide acting as a virulence factor.
Length = 355
Score = 56.0 bits (136), Expect = 1e-08
Identities = 57/226 (25%), Positives = 92/226 (40%), Gaps = 32/226 (14%)
Query: 135 KADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKED 194
+AD +V SE+ + + D + +++ V LE+ P P P P E
Sbjct: 130 RADFVVAISEYNRQQLIR-LLGCDPDKIHVVHCGV---DLERFPPRP------PPPPGEP 179
Query: 195 IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELG 254
+ LS+ R KK L+ + +L L+ R D +L + G EL
Sbjct: 180 LRILSVGRLVEKKGLDYLLEALALLKDRGID-----FRLDIVGDGPLR--------DELE 226
Query: 255 VLVKKLKLSDNVLFLTSPSDAAKISLFKFCH-----CIIYTPSNEHFGI--VPIEAMFCK 307
L+ +L L D V L + S L + + + G+ V +EAM
Sbjct: 227 ALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVT-AADGDREGLPVVLMEAMAMG 285
Query: 308 RPVIAVNSGGPKESVVDGRTGFLCESNE-EAFAKAMKKIVDNDGNI 352
PVI+ + G E V DG TG L + EA A A+++++D+
Sbjct: 286 LPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPELR 331
>gnl|CDD|99984 cd03813, GT1_like_3, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria, while some of them are also found in
Archaea and eukaryotes.
Length = 475
Score = 55.3 bits (134), Expect = 2e-08
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 20/189 (10%)
Query: 190 PGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEY 249
P KE V I R K+++ I + + + ++ + V G D E+ EY
Sbjct: 289 PEKEPPVVGLIGRVVPIKDIKTFIRAA----AIVRKKIP-DAEGWVIGPTD----EDPEY 339
Query: 250 YKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309
+E LV+ L L DNV F T + + ++ T +E +V +EAM P
Sbjct: 340 AEECRELVESLGLEDNVKF-TGFQNVKEY--LPKLDVLVLTSISEGQPLVILEAMAAGIP 396
Query: 310 VIAVNSGGPKESVVD------GRTGFLCE-SNEEAFAKAMKKIVDNDGNIIQQFSQFGFN 362
V+A + G +E + G G + ++ EA A+A+ +++ + + + + G
Sbjct: 397 VVATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPE-LRRAMGEAGRK 455
Query: 363 RFNEKFSFQ 371
R ++ +
Sbjct: 456 RVERYYTLE 464
>gnl|CDD|233881 TIGR02470, sucr_synth, sucrose synthase. This model represents
sucrose synthase, an enzyme that, despite its name,
generally uses rather produces sucrose. Sucrose plus UDP
(or ADP) becomes D-fructose plus UDP-glucose (or
ADP-glucose), which is then available for cell wall (or
starch) biosynthesis. The enzyme is homologous to
sucrose phosphate synthase, which catalyzes the
penultimate step in sucrose synthesis. Sucrose synthase
is found, so far, exclusively in plants and
cyanobacteria [Energy metabolism, Biosynthesis and
degradation of polysaccharides].
Length = 784
Score = 55.5 bits (134), Expect = 3e-08
Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 31/205 (15%)
Query: 195 IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGY----DPHNIENVEYY 250
I+F S+ R +R KNL L R S +++ V LVV G + + E
Sbjct: 552 IIF-SMARLDRVKNLT----GLVECYGR-SPKLRELVNLVVVAGKLDAKESKDREEQAEI 605
Query: 251 KELGVLVKKLKLSDNVLFLTSPSDAAKI-SLFK--------FCHCIIYTPSNEHFGIVPI 301
+++ L+ + +L + ++ + + + L++ F +Y E FG+ +
Sbjct: 606 EKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALY----EAFGLTVL 661
Query: 302 EAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIV------DNDGNIIQQ 355
EAM C P A GGP E + DG +GF + +A +KIV D D + Q+
Sbjct: 662 EAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPY--HGEEAAEKIVDFFEKCDEDPSYWQK 719
Query: 356 FSQFGFNRFNEKFSFQAFSIQLNTI 380
SQ G R EK++++ +S +L T+
Sbjct: 720 ISQGGLQRIYEKYTWKIYSERLLTL 744
>gnl|CDD|99966 cd03792, GT1_Trehalose_phosphorylase, Trehalose phosphorylase (TP)
reversibly catalyzes trehalose synthesis and degradation
from alpha-glucose-1-phosphate (alpha-Glc-1-P) and
glucose. The catalyzing activity includes the
phosphorolysis of trehalose, which produce alpha-Glc-1-P
and glucose, and the subsequent synthesis of trehalose.
This family is most closely related to the GT1 family of
glycosyltransferases.
Length = 372
Score = 54.5 bits (132), Expect = 4e-08
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 16/159 (10%)
Query: 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGY---DPHNIENVEYYKE 252
++R++ K+ I + ++ R+ D +LV+ G DP E Y+E
Sbjct: 192 YITQVSRFDPWKDPFGVIDAYRKVKERVPD-----PQLVLVGSGATDDP---EGWIVYEE 243
Query: 253 LGVLVKKLKLSDNVLFLTSPSDAAK-ISLFKFCHCIIYTPS-NEHFGIVPIEAMFCKRPV 310
+ ++ + ++ LT P + ++ + ++ S E FG+ EA++ +PV
Sbjct: 244 V---LEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPV 300
Query: 311 IAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDND 349
IA GG + DG TGFL ++ EEA + + + D +
Sbjct: 301 IAGPVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPE 339
>gnl|CDD|222322 pfam13692, Glyco_trans_1_4, Glycosyl transferases group 1.
Length = 134
Score = 50.4 bits (121), Expect = 9e-08
Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 25/149 (16%)
Query: 201 NRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKL 260
+ L L +L LR L D V+L + G P +
Sbjct: 10 HAPNWDGLLWLLEEALPLLRKALPD-----VELHIIGSG-PEELA--------------- 48
Query: 261 KLSDNVLFLTSPSDAAKISLFKFCH-CIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPK 319
+L+ NV FL D A +L + + +EA+ PV+A + G
Sbjct: 49 RLAPNVHFLGFVEDLA--ALLASADVALAPLRFGAGSPLKLLEALAAGLPVVATDIGAEG 106
Query: 320 ESVVDGRTGFLCESNEEAFAKAMKKIVDN 348
D G L + E FA+A+ +++ +
Sbjct: 107 L-PEDLGWGVLVADDPEEFAEAIVRLLAD 134
>gnl|CDD|99994 cd03825, GT1_wcfI_like, This family is most closely related to the
GT1 family of glycosyltransferases. wcfI in Bacteroides
fragilis has been shown to be involved in the capsular
polysaccharide biosynthesis.
Length = 365
Score = 52.6 bits (127), Expect = 1e-07
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 294 EHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349
E+F IEA+ C PV+A + GG + V G TG+L + + E A+ ++ ++ +
Sbjct: 275 ENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADP 331
>gnl|CDD|99998 cd04949, GT1_gtfA_like, This family is most closely related to the
GT1 family of glycosyltransferases and is named after
gtfA in Streptococcus gordonii, where it plays a role in
the O-linked glycosylation of GspB, a cell surface
glycoprotein involved in platelet binding. In general
glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
bacteria.
Length = 372
Score = 49.1 bits (118), Expect = 2e-06
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 20/165 (12%)
Query: 197 FLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVL 256
+++ R +K L+ I + + ++ D L + G Y + E L
Sbjct: 207 IITVARLAPEKQLDQLIKAFAKVVKQVPD-----ATLDIYG-YGDEEEKLKE-------L 253
Query: 257 VKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIA--VN 314
+++L L D V D ++ ++ + T +E FG+ +EA+ PVI+ VN
Sbjct: 254 IEELGLEDYVFLKGYTRDLDEV--YQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVN 311
Query: 315 SGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNIIQQFSQ 358
G P E + DG G+L + EA A+A+ +++++ +Q+FS+
Sbjct: 312 YG-PSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKL-LQKFSE 354
>gnl|CDD|131525 TIGR02472, sucr_P_syn_N, sucrose-phosphate synthase, putative,
glycosyltransferase domain. This family consists of the
N-terminal regions, or in some cases the entirety, of
bacterial proteins closely related to plant
sucrose-phosphate synthases (SPS). The C-terminal domain
(TIGR02471), found with most members of this family,
resembles both bona fide plant sucrose-phosphate
phosphatases (SPP) and the SPP-like domain of plant SPS.
At least two members of this family lack the SPP-like
domain, which may have binding or regulatory rather than
enzymatic activity by analogy to plant SPS. This enzyme
produces sucrose 6-phosphate and UDP from UDP-glucose
and D-fructose 6-phosphate, and may be encoded near the
gene for fructokinase.
Length = 439
Score = 45.9 bits (109), Expect = 2e-05
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 294 EHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNI 352
E FG+ +EA C P++A + GGP++ + + R G L + + EA A A++ + +
Sbjct: 351 EPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALSDSSQ- 409
Query: 353 IQQFSQFGFNRFNEKFSFQA 372
Q +S+ G +S+ A
Sbjct: 410 WQLWSRNGIEGVRRHYSWDA 429
>gnl|CDD|234448 TIGR04047, MSMEG_0565_glyc, glycosyltransferase, MSMEG_0565 family.
A conserved gene cluster found sporadically from
Actinobacteria to Proteobacteria to Cyanobacteria
features a radical SAM protein, an N-acetyltransferase,
an oxidoreductase, and two additional proteins whose
functional classes are unclear. The metabolic role of
the cluster is probably biosynthetic. This
glycosyltransferase, named from member MSMEG_0565 from
Mycobacterium smegmatis, occurs in most but not all
instances of the cluster [Unknown function, Enzymes of
unknown specificity].
Length = 373
Score = 44.7 bits (106), Expect = 4e-05
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 20/159 (12%)
Query: 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGG-----YDPHNIENVEYY 250
L++ E +KN + + LR+R +LV+AGG YD Y
Sbjct: 195 YVLAVGGIEPRKNTIDLLEAFALLRARRPQ-----AQLVIAGGATLFDYDA-------YR 242
Query: 251 KELGVLVKKLKLSDNVLFLTSP-SDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP 309
+E +L L + +T P DA +L++ + E FG+V +EA+ P
Sbjct: 243 REFEARAAELGLDPGAVVITGPVPDADLPALYRCADAFAFPSLKEGFGLVVLEALASGIP 302
Query: 310 VIAVNSGGPKESVVDGRTGFLCE-SNEEAFAKAMKKIVD 347
V+A + P + + S+ ++ A A+ +D
Sbjct: 303 VVA-SDIAPFTEYLGRFDAAWADPSDPDSIADALALALD 340
>gnl|CDD|132132 TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH1 system
associated. Members of this family include a match to
the pfam00534 Glycosyl transferases group 1 domain.
Nearly all are found in species that encode the
PEP-CTERM/exosortase system predicted to act in protein
sorting in a number of Gram-negative bacteria. In
particular, these transferases are found proximal to a
particular variant of exosortase, EpsH1, which appears
to travel with a conserved group of genes summarized by
Genome Property GenProp0652. The nature of the sugar
transferase reaction catalyzed by members of this clade
is unknown and may conceivably be variable with respect
to substrate by species, but we hypothesize a conserved
substrate.
Length = 374
Score = 43.9 bits (104), Expect = 7e-05
Identities = 49/199 (24%), Positives = 72/199 (36%), Gaps = 19/199 (9%)
Query: 177 TTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVA 236
PI E +V ++ R + K+ + + L +L E ++LV+
Sbjct: 179 GDRSPILP--PDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLP-EGAERLRLVIV 235
Query: 237 G-GYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS-NE 294
G G E + L LV D+V P+ + LF PS E
Sbjct: 236 GDGPARGACEQMVRAAGLAHLVWLPGERDDV-----PALMQALDLFVL-------PSLAE 283
Query: 295 HFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNE-EAFAKAMKKIVDNDGNII 353
+EAM PVIA GG E V G TG L + A A+A++ V +
Sbjct: 284 GISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARR 343
Query: 354 QQFSQFGFNRFNEKFSFQA 372
G R ++FS A
Sbjct: 344 AH-GAAGRARAEQQFSINA 361
>gnl|CDD|185381 PRK15484, PRK15484, lipopolysaccharide
1,2-N-acetylglucosaminetransferase; Provisional.
Length = 380
Score = 43.2 bits (102), Expect = 1e-04
Identities = 60/249 (24%), Positives = 105/249 (42%), Gaps = 24/249 (9%)
Query: 138 KIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVF 197
KI+V S+F K + + D + I+ E + + LN P ++ V
Sbjct: 142 KIIVPSQFLKKFYEERLPNAD---ISIVPNGFCLETYQSNPQPNLRQQLNISP--DETVL 196
Query: 198 LSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNI---ENVEYYKELG 254
L R K + L + + L + S+ +KLVV G DP E Y K++
Sbjct: 197 LYAGRISPDKGILLLMQAFEKLATAHSN-----LKLVVVG--DPTASSKGEKAAYQKKVL 249
Query: 255 VLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSN--EHFGIVPIEAMFCKRPVIA 312
K++ +L P K+ + ++ PS E F +V +EAM +PV+A
Sbjct: 250 EAAKRIGDRCIMLGGQPPE---KMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLA 306
Query: 313 VNSGGPKESVVDGRTGF-LCES-NEEAFAKAMKKIVDND--GNIIQQFSQFGFNRFNEKF 368
GG E V++G TG+ L E ++ + + + + I +Q F F++++ +
Sbjct: 307 STKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPELTQIAEQAKDFVFSKYSWEG 366
Query: 369 SFQAFSIQL 377
Q F Q+
Sbjct: 367 VTQRFEEQI 375
>gnl|CDD|234452 TIGR04063, stp3, PEP-CTERM/exosortase A-associated
glycosyltransferase, Daro_2409 family.
PEP-CTERM/exosortase is a protein-sorting system
associated with exopolysaccharide production. Members of
this protein family are group 1 glycosyltransferases
(see pfam00534) in which the overwhelming majority occur
in species with the EpsH1 form of exosortase (see
TIGR03109), and usually co-clustered with the
exosortase. A typical member is Daro_2409 from
Dechloromonas aromatica RCB.
Length = 397
Score = 42.6 bits (101), Expect = 2e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 300 PIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNE-EAFAKAMKKIVDND 349
P+EAM R V A + GG +E + DG TG L + + A A A+ ++DN
Sbjct: 311 PLEAMAQGRLVAASDVGGHRELIRDGETGVLFPAGDPAALAAALLALLDNR 361
>gnl|CDD|99983 cd03812, GT1_CapH_like, This family is most closely related to the
GT1 family of glycosyltransferases. capH in
Staphylococcus aureus has been shown to be required for
the biosynthesis of the type 1 capsular polysaccharide
(CP1).
Length = 358
Score = 39.1 bits (92), Expect = 0.003
Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 29/184 (15%)
Query: 192 KEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYK 251
++ V + R+ +KN E I L + + KL++ G + E E K
Sbjct: 190 EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPN-----AKLLLVG-----DGELEEEIK 239
Query: 252 ELGVLVKKLKLSDNVLFLTSPSDAAKI----SLFKFCHCIIYTPS-NEHFGIVPIEAMFC 306
+ VK+L L D V+FL +D ++ +F F PS E +V IEA
Sbjct: 240 KK---VKELGLEDKVIFLGVRNDVPELLQAMDVFLF-------PSLYEGLPLVLIEAQAS 289
Query: 307 KRPVIAVNSGGPKESVVDGRTGF--LCESNEEAFAKAMK-KIVDNDGNIIQQFSQFGFNR 363
P I ++ KE + F L ES E + +K K D + + G +
Sbjct: 290 GLPCI-LSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGLDA 348
Query: 364 FNEK 367
+E
Sbjct: 349 DDEA 352
>gnl|CDD|185101 PRK15179, PRK15179, Vi polysaccharide biosynthesis protein TviE;
Provisional.
Length = 694
Score = 37.3 bits (86), Expect = 0.012
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 230 HVKLVVAGGYDPHNIENV-EYYKELGVLVKKL--KLSDNVLFLTSPSDAAKISLFKFCHC 286
V+ ++ GG E+V E+ + LG+ + L LS V + + +A + L +F
Sbjct: 548 KVRFIMVGGGPLL--ESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAF-LLLSRF--- 601
Query: 287 IIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNE-EA--FAKAMK 343
E V IEA F PV+ +GG E+V +G TG ++ A A+A+
Sbjct: 602 -------EGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALA 654
Query: 344 KIVD 347
+I D
Sbjct: 655 RIHD 658
>gnl|CDD|234487 TIGR04157, glyco_rSAM_CFB, glycosyltransferase, GG-Bacteroidales
peptide system. Members of this protein family are
predicted glycosyltransferases that occur in conserved
gene neighborhoods in various members of the
Bacteroidales. These neighborhoods feature a radical SAM
enzyme predicted to act in peptide modification (family
TIGR04148), peptides from family TIGR04149 with a
characteristic GG cleavage motif, and several other
proteins.
Length = 406
Score = 37.3 bits (87), Expect = 0.013
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 291 PS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFL---------CESNEEAFAK 340
PS +E V IE M P+I S G E + DG G+ E +++ +
Sbjct: 307 PSFHEQCSYVAIEMMMHGLPLIGTTSTGLSEMIEDGLNGYKIPIKEYRDYVELDKKELVQ 366
Query: 341 AMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQL 377
+ K++ + + +Q + R+ EK+S + +
Sbjct: 367 KLLKLLSSS-DEAKQMGKNARRRYLEKYSLEVMRENM 402
>gnl|CDD|99997 cd04946, GT1_AmsK_like, This family is most closely related to the
GT1 family of glycosyltransferases. AmsK is involved in
the biosynthesis of amylovoran, which functions as a
virulence factor. It functions as a glycosyl transferase
which transfers galactose from UDP-galactose to a
lipid-linked amylovoran-subunit precursor. The members
of this family are found mainly in bacteria and Archaea.
Length = 407
Score = 36.9 bits (86), Expect = 0.014
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 302 EAMFCKRPVIAVNSGGPKESVVDGRTGFLCESN--EEAFAKAMKKIVDNDGNIIQQFSQF 359
EAM PVIA N GG E V +G G L + ++ K +DN+ Q +
Sbjct: 329 EAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEE-EYQTMREK 387
Query: 360 GFNRFNEKFS 369
++ E F+
Sbjct: 388 AREKWEENFN 397
>gnl|CDD|222237 pfam13579, Glyco_trans_4_4, Glycosyl transferase 4-like domain.
Length = 158
Score = 34.7 bits (80), Expect = 0.035
Identities = 32/156 (20%), Positives = 50/156 (32%), Gaps = 19/156 (12%)
Query: 3 GATARLTITATAWGATGPRTT-----AHDHCFKETKDGTLPVKVIGDWLPRNIFGKFYAL 57
GA + A A A G T + +DG V+V +PR
Sbjct: 2 GAERYVLELARALAARGHEVTVVTPRGPPGRPELEEDG---VRVHRLPVPR--RPSLPGD 56
Query: 58 CMYLRMIVIALYVAWYSEKPDLVFCDLVSICIPILQA-KQFKVLFYCHYPDQLLSKQGSF 116
LR L E+PD+V + A ++ V L +
Sbjct: 57 LRALR----RLRRLLRRERPDVVHAHGPLAGLLARLAARRRGVPVVVTPHGLALRQGSGL 112
Query: 117 LKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQA 152
+ + R LE +AD +V SE +++A
Sbjct: 113 KRRLARA----LERRLLRRADAVVAVSEAEAELLRA 144
>gnl|CDD|217395 pfam03161, LAGLIDADG_2, LAGLIDADG DNA endonuclease family. This is
a family of site-specific DNA endonucleases encoded by
DNA mobile elements. Similar to pfam00961, the members
of this family are also LAGLIDADG endonucleases.
Length = 177
Score = 33.4 bits (77), Expect = 0.11
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 126 NKLEEWTTCKAD----KIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEP 181
KL + C ++ K ++ KS + F + + LY Y G +K P
Sbjct: 41 EKLLGY--CTSNPPPRKPTRGNKSGKSYISWEFNTRSLPSFNKLYELFYINGKKKIVPNL 98
Query: 182 IENVLNPL 189
IE L PL
Sbjct: 99 IEEYLTPL 106
>gnl|CDD|215469 PLN02871, PLN02871, UDP-sulfoquinovose:DAG
sulfoquinovosyltransferase.
Length = 465
Score = 33.9 bits (78), Expect = 0.14
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 290 TPS-NEHFGIVPIEAMFCKRPVIAVNSGG-----PKESVVDGRTGFLCESNE-EAFAKAM 342
PS +E G V +EAM PV+A +GG P + +G+TGFL + + + +
Sbjct: 337 MPSESETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQ--EGKTGFLYTPGDVDDCVEKL 394
Query: 343 KKIVDND 349
+ ++ +
Sbjct: 395 ETLLADP 401
>gnl|CDD|220968 pfam11074, DUF2779, Domain of unknown function(DUF2779). This
domain is conserved in bacteria. The function is not
known.
Length = 127
Score = 30.6 bits (70), Expect = 0.53
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 328 GFLCESNE---EAFAKAMKKIVDND-GNIIQQFSQFGFNRFNE-KFSFQAFSIQLNTIVN 382
FL E AF +A+KK + D G+I+ F R E F + ++ I+
Sbjct: 44 EFLAEDGIDPRRAFIEALKKAIGKDYGSIVVYNKSFEKTRLKELAQLFPELADKIKAIIE 103
Query: 383 NMLD 386
+D
Sbjct: 104 RTVD 107
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 30.8 bits (70), Expect = 1.3
Identities = 26/136 (19%), Positives = 39/136 (28%), Gaps = 44/136 (32%)
Query: 74 SEKPDLVFC---DLVSICIPIL---------------------QAKQFKVLFYCHYPDQL 109
+ L D + + IPIL L P L
Sbjct: 64 IQNGSLYVATPIDPLFLLIPILYKNCTTKSKNKFLTLDDILDSLYSHLSRLLNWENPRNL 123
Query: 110 LSKQGSFLKSI-----------YRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLD 158
L K+ LK++ Y+ KL EW K +++V +K SL
Sbjct: 124 LEKR---LKAVCDVKEEGDEKFYKLSEEKLLEWLLKKVERLVKYLPKSKEE------SLV 174
Query: 159 HKCLDILYPSVYTEGL 174
L++ P L
Sbjct: 175 RSALELDIPDDILNLL 190
>gnl|CDD|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and
metabolism].
Length = 487
Score = 30.7 bits (70), Expect = 1.3
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 291 PSN-EHFGIVPIEAMFCKRPVIAVNSGGPKESVVD--------GRTGFLCE-SNEEAFAK 340
PS E G+ + AM I +GG ++VVD TGFL +N + A
Sbjct: 375 PSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLAN 434
Query: 341 AMKK 344
A+++
Sbjct: 435 ALRR 438
>gnl|CDD|185387 PRK15490, PRK15490, Vi polysaccharide biosynthesis protein TviE;
Provisional.
Length = 578
Score = 30.8 bits (69), Expect = 1.4
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 299 VPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEA-------FAKAMKKIVDNDGN 351
V IEA PVI+ +GG E ++G +GF+ + + +A+ + + +
Sbjct: 488 VLIEAQMVGVPVISTPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTG 547
Query: 352 IIQQFSQFGFNRF 364
I QQ F RF
Sbjct: 548 ICQQTQSFLQERF 560
>gnl|CDD|235121 PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 306
Score = 30.3 bits (69), Expect = 1.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 309 PVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDND 349
PV+ VN G GFL E+ E +A++++VD D
Sbjct: 98 PVLGVNLG---------HVGFLAEAEAEDLDEAVERVVDRD 129
>gnl|CDD|235953 PRK07188, PRK07188, nicotinate phosphoribosyltransferase;
Provisional.
Length = 352
Score = 29.9 bits (68), Expect = 2.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 219 LRSRLSDEMKTHVKLVVAGGYDPHNIENVE 248
LR L + HVK++V+ G+D I E
Sbjct: 269 LRKALDENGGKHVKIIVSSGFDAKKIREFE 298
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 30.0 bits (68), Expect = 2.3
Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 4/117 (3%)
Query: 45 WLPRNIFGKFYALCMYLRMIVIALYVAWYSEKPDLVFCDLVSICIP-ILQAKQFKVLFYC 103
L R K L V+ KPD+V + P + AK +
Sbjct: 60 GLRRKGSLKLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVII 119
Query: 104 HYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHK 160
H + + L + + + +A N T V+ F L
Sbjct: 120 HEQNAVPGLANKILSKFAKKVAS---AFPKLEAGVKPENVVVTGIPVRPEFEELPAA 173
>gnl|CDD|219958 pfam08660, Alg14, Oligosaccharide biosynthesis protein Alg14 like.
Alg14 is involved dolichol-linked oligosaccharide
biosynthesis and anchors the catalytic subunit Alg13 to
the ER membrane.
Length = 166
Score = 29.1 bits (66), Expect = 2.5
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 63 MIVIALY--VAWYSEKPDLVFCDLVSICIPI-LQAKQFKVLFYCH 104
+ L E+PD++ C+ C+P L AK K+L
Sbjct: 73 TLRNLLSALKLLRRERPDVILCNGPGTCVPFCLAAKLLKILGLKG 117
>gnl|CDD|237972 PRK15483, PRK15483, type III restriction-modification system StyLTI
enzyme res; Provisional.
Length = 986
Score = 30.0 bits (68), Expect = 2.6
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 336 EAFAKAMKKIVDND---------GNIIQQFSQFGFNRFNEKFSFQAFSIQLNT 379
+A +K+++ D NII+ F+++ F ++FS++ Q +T
Sbjct: 777 QALMALLKEVLHGDSRYLNEITLDNIIRAFNRWLNEHFAQRFSYKPLDFQAST 829
>gnl|CDD|216986 pfam02350, Epimerase_2, UDP-N-acetylglucosamine 2-epimerase. This
family consists of UDP-N-acetylglucosamine 2-epimerases
EC:5.1.3.14 this enzyme catalyzes the production of
UDP-ManNAc from UDP-GlcNAc. Note that some of the
enzymes is this family are bifunctional, and in those
instances Pfam matches only the N-terminal half of the
protein suggesting that the additional C-terminal part
(when compared to mono-functional members of this
family) is responsible for the UPD-N-acetylmannosamine
kinase activity of these enzymes. This hypothesis is
further supported by the assumption that the C-terminal
part of rat UDP-GlcNAc-2-epimerase is the kinase domain.
Length = 346
Score = 29.0 bits (66), Expect = 4.5
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 255 VLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVN 314
+ + L+ N+ + +SL K +I T S G + EA +PV+ +
Sbjct: 230 RINELLEELPNIRLIEPLGYLDFLSLLKNADLVI-TDS----GGIQEEAPSLGKPVLNLR 284
Query: 315 SGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDN 348
+ + T L +++EA A++K++D+
Sbjct: 285 DTTERPEGREAGTNVLVGTDKEAILAAIEKLLDD 318
>gnl|CDD|216068 pfam00697, PRAI, N-(5'phosphoribosyl)anthranilate (PRA) isomerase.
Length = 195
Score = 28.1 bits (63), Expect = 6.5
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 221 SRLSDEMKTHVKLVVAGGYDPHNI-ENVEYYKELGV 255
S +S + + + +++AGG P N+ E ++ GV
Sbjct: 136 SLISKLLLSGLPVILAGGLTPENVSEAIQTLGPAGV 171
>gnl|CDD|232932 TIGR00345, GET3_arsA_TRC40, transport-energizing ATPase,
TRC40/GET3/ArsA family. Members of this family are
ATPases that energize transport, although with different
partner proteins for different functions. Recent
findings show that TRC40 (GET3 in yeast) in involved in
the insertion of tail-anchored membrane proteins in
eukaryotes. A similar function is expected for members
of this family in archaea. However, the earliest
discovery of a function for this protein family is ArsA,
an arsenic resistance protein that partners with ArsB
(see pfam02040) for As(III) efflux [Hypothetical
proteins, Conserved].
Length = 284
Score = 28.2 bits (63), Expect = 7.9
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 186 LNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVV 235
G + E K+ +E A R LSD +T LVV
Sbjct: 154 AKLFMGAGEDDEALEKLEELKEQIEAA-------REILSDPERTSFVLVV 196
>gnl|CDD|218264 pfam04786, Baculo_DNA_bind, ssDNA binding protein. Family of
Baculovirus ssDNA binding proteins.
Length = 248
Score = 27.7 bits (62), Expect = 9.4
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 92 LQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVV 141
LQ K F VL C P L + SFLK K KIVV
Sbjct: 9 LQRKNFTVL-RCDSPFNKLKECLSFLKECLPIDEWLDRLVPEEKDKKIVV 57
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 28.3 bits (64), Expect = 9.6
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 349 DGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLD 386
+G II +F F AF+ +L I ++M+
Sbjct: 448 NGEIIDKFEFF----IKPGHPLSAFTTELTGITDDMVK 481
>gnl|CDD|237601 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 569
Score = 28.2 bits (63), Expect = 9.8
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 309 PVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQ--QFSQFGFNRFNE 366
P+I +N G GFL E ++E KA+ I+ + I + + S F ++
Sbjct: 374 PIICINMG---------TVGFLTEFSKEEIFKAIDSIISGEYEIEKRTKLSGFILKDGHQ 424
Query: 367 KFSFQAFSIQLNTIV 381
A LN +V
Sbjct: 425 NILPSA----LNEVV 435
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.417
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,794,436
Number of extensions: 1917483
Number of successful extensions: 1802
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1744
Number of HSP's successfully gapped: 76
Length of query: 390
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 291
Effective length of database: 6,546,556
Effective search space: 1905047796
Effective search space used: 1905047796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)