RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12587
(390 letters)
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural
genomics, PSI, protein struct initiative; 1.80A
{Archaeoglobus fulgidus} SCOP: c.87.1.8
Length = 177
Score = 161 bits (411), Expect = 1e-48
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 21/188 (11%)
Query: 181 PIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYD 240
P+E D +LS+NR +K +EL + L+ KL + G +
Sbjct: 11 PVETSKFKFKCYGDF-WLSVNRIYPEKRIELQLEVFKKLQ---------DEKLYIVGWFS 60
Query: 241 PHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVP 300
+ Y +++ + DNV FL S S+ I L+ C ++ T +E FG+ P
Sbjct: 61 KGD-HAERYARKIMKI-----APDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTP 114
Query: 301 IEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQFSQFG 360
IEAM +PVIAVN GG KE+V++ +TG+L ++ AMKK+ N +F +
Sbjct: 115 IEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNP----DKFKKDC 170
Query: 361 FNRFNEKF 368
F R ++F
Sbjct: 171 FRRA-KEF 177
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 129 bits (325), Expect = 8e-34
Identities = 54/315 (17%), Positives = 104/315 (33%), Gaps = 31/315 (9%)
Query: 60 YLRMIVIALYVAWYSEKPDLVFC-DLVSICIPILQAKQFKVLFYCHYPDQLLSKQGSFLK 118
YL + D V D + K+ L+ CH L
Sbjct: 111 YLNVNRENSKFIDL-SSFDYVLVHDPQPAALIEFYEKKSPWLWRCHID----------LS 159
Query: 119 SIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLE--K 176
S R L + I E+ + LD I+ PS+ + +
Sbjct: 160 SPNREFWEFLRRFVEKYDRYIFHLPEYVQP-------ELDRNKAVIMPPSIDPLSEKNVE 212
Query: 177 TTPEPIENVLNPL-PGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVV 235
I +L E + ++R++ K + I ++ ++ V+L++
Sbjct: 213 LKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPG-----VQLLL 267
Query: 236 AGGYDPHNIENVEYYKE-LGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNE 294
G + E Y+++ L + + + + + + I+ E
Sbjct: 268 VGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLI-GVHAREVNAFQRASDVILQMSIRE 326
Query: 295 HFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQ 354
FG+ EAM+ +PVI GG K +VDG TGFL + + + ++ + + +
Sbjct: 327 GFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR-DANEAVEVVLYLLKHP-EVSK 384
Query: 355 QFSQFGFNRFNEKFS 369
+ R + F
Sbjct: 385 EMGAKAKERVRKNFI 399
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 124 bits (314), Expect = 2e-32
Identities = 51/277 (18%), Positives = 102/277 (36%), Gaps = 24/277 (8%)
Query: 116 FLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLE 175
LN L + ++D + S + + +K + +Y +
Sbjct: 137 ITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETHELVK--PNKDIQTVYNFIDERVYF 194
Query: 176 KTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVV 235
K ++ + + + I+ + + K ++ + + + + + KL++
Sbjct: 195 KRDMTQLKKEYGISES--EKILIHISNFRKVKRVQDVVQAFAKIVTEV------DAKLLL 246
Query: 236 AG-GYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNE 294
G G + I LVK L + D VLFL + A++ ++ E
Sbjct: 247 VGDGPEFCTILQ---------LVKNLHIEDRVLFLGKQDNVAEL--LAMSDLMLLLSEKE 295
Query: 295 HFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDGNII 353
FG+V +EAM C P I GG E + G TG+LCE + A +++ ++ +
Sbjct: 296 SFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDE-ELH 354
Query: 354 QQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKKTK 390
+ + E+F + Q TI ++L
Sbjct: 355 RNMGERARESVYEQFRSEKIVSQYETIYYDVLRDDKN 391
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 116 bits (293), Expect = 3e-29
Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 14/227 (6%)
Query: 128 LEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLN 187
E+ AD + VN++ + + + + + ++ P E E
Sbjct: 177 CEQQLVDNADVLAVNTQEEMQDLMHHYDADPDR-ISVVSPGADVELYSPGNDRATERSRR 235
Query: 188 PLPGKED---IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNI 244
L + F+ R + K ++ I ++ +L R D ++++++ GG N
Sbjct: 236 ELGIPLHTKVVAFVG--RLQPFKGPQVLIKAVAALFDRDPD---RNLRVIICGGPSGPN- 289
Query: 245 ENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAM 304
+ ++L + + FL + +++++ + NE FG+V +EA
Sbjct: 290 ---ATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQ 346
Query: 305 FCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350
PVIA GG +V +G TG L + + A+A A+ ++D+D
Sbjct: 347 ASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDE 393
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
lipopolysaccharide biosynthesis, family GT-4,
glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Length = 374
Score = 107 bits (268), Expect = 4e-26
Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 20/226 (8%)
Query: 129 EEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLE-KTTPEPIENVLN 187
+ K+ K+++ ++ + Q +++ + IL P +Y + + P E
Sbjct: 130 ATFEQGKSTKLMMLTDKQIADFQKHYQTEPER-FQILPPGIYPDRKYSEQIPNSREIYRQ 188
Query: 188 PLPGKED-IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIEN 246
KE + L + +K ++ +I +L + L + ++ + L V G P
Sbjct: 189 KNGIKEQQNLLLQVGSDFGRKGVDRSIEAL----ASLPESLRHNTLLFVVGQDKP----- 239
Query: 247 VEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFC 306
++ L +KL + NV F + +D + L +++ E GIV +EA+
Sbjct: 240 -RKFEAL---AEKLGVRSNVHFFSGRNDVS--ELMAAADLLLHPAYQEAAGIVLLEAITA 293
Query: 307 KRPVIAVNSGGPKESVVDGRTGFLCES--NEEAFAKAMKKIVDNDG 350
PV+ G + D G + ++E + ++K +
Sbjct: 294 GLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSP 339
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 106 bits (267), Expect = 7e-26
Identities = 72/383 (18%), Positives = 120/383 (31%), Gaps = 68/383 (17%)
Query: 4 ATARLTITATAWGATGPRTTAHDHCFKETKDGTLPVKVIGDWLPRNIFGKFYALCMYLRM 63
+ + A+ A D TL +VI PR+ + L
Sbjct: 33 DPESIVVFASTQNAEEAHAY----------DKTLDYEVIR--WPRS---------VMLPT 71
Query: 64 IVIALYVAWY--SEKPDLVFC-DLVSICIPILQAKQF---KVLFYCHYPDQLLSKQGSFL 117
A +A + D V+ + + AKQ KV+ H G +
Sbjct: 72 PTTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTH---------GHEV 122
Query: 118 KSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKT 177
+ + D + S++T ++ F H + L V +
Sbjct: 123 GWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKSAFG--SHPTFEHLPSGVDVKRFTPA 180
Query: 178 TPEPIENVLNPLPGKED---IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLV 234
TPE L + I S R +K + I ++ + + D +L+
Sbjct: 181 TPEDKSATRKKLGFTDTTPVIACNS--RLVPRKGQDSLIKAMPQVIAARPD-----AQLL 233
Query: 235 VAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK----FC---HCI 287
+ G Y L L + S NV FL I+ F
Sbjct: 234 IVGS--------GRYESTLRRLATDV--SQNVKFLGRLEYQDMINTLAAADIFAMPARTR 283
Query: 288 IYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIV 346
E GIV +EA C PVIA SGG E+V TG + E + + ++ + +++
Sbjct: 284 GGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL 342
Query: 347 DNDGNIIQQFSQFGFNRFNEKFS 369
D+ G ++S
Sbjct: 343 DDPI-RRAAMGAAGRAHVEAEWS 364
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
{Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Length = 499
Score = 107 bits (268), Expect = 1e-25
Identities = 51/295 (17%), Positives = 98/295 (33%), Gaps = 46/295 (15%)
Query: 129 EEWTTCKADKIVVNSEFTKS--VVQATFRSLDHK-------------CLDILYPSVYTEG 173
E T ADKI+V++ + +R + + +
Sbjct: 184 ERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKI 243
Query: 174 LEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKL 233
K T ++ + I+ S R ++KKN + + + E++ L
Sbjct: 244 KAKITKYLERDLGSERMELPAIIASS--RLDQKKNHYGLVEAYVQNK-----ELQDKANL 296
Query: 234 VVAGG--------YDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK--- 282
V+ Y E E ++ L+ V S +
Sbjct: 297 VLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLA 356
Query: 283 -----FCHCIIYTPS-NEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCE-SNE 335
F S E FG+ P+EAM P + +GGP E + G+ G L + +
Sbjct: 357 SKGSVFA-----LTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDP 411
Query: 336 EAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKKTK 390
E A+ + K + + + G R E++++Q + ++ + D+K +
Sbjct: 412 EDIARGLLKAFE-SEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKDE 465
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar
donar complex rossmann fold, GT-B fold,
glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A
{Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Length = 816
Score = 99.3 bits (247), Expect = 1e-22
Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 21/228 (9%)
Query: 168 SVYTEGLEKTTPEPIEN--VLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSD 225
+ + +E+ +EN L L K+ + ++ R +R KNL +
Sbjct: 544 TKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNT----- 598
Query: 226 EMKTHVKLVVAGGYDPH---NIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKIS--- 279
++ LVV GG + E K++ L+++ KL+ +++S D +
Sbjct: 599 RLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELY 658
Query: 280 --LFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFL-----CE 332
+ + E FG+ +EAM C P A GGP E +V G++GF +
Sbjct: 659 RYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGD 718
Query: 333 SNEEAFAKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTI 380
+ A K ++ + + S+ G R EK+++Q +S +L T+
Sbjct: 719 QAADTLADFFTKCKEDP-SHWDEISKGGLQRIEEKYTWQIYSQRLLTL 765
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 90.2 bits (223), Expect = 5e-20
Identities = 47/336 (13%), Positives = 109/336 (32%), Gaps = 39/336 (11%)
Query: 75 EKPDLVFCDLVSICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYR-FPLNKLEEWTT 133
KPD+V PI+ +K ++ + + N ++
Sbjct: 80 HKPDIVMI----YNDPIV----IGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSH 131
Query: 134 CKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKE 193
K ++ S+ S + ++I+ V T+ T ++ +
Sbjct: 132 PKVVGVMAMSKCWISDICNYGC---KVPINIVSHFVDTK-----TIYDARKLVGLSEYND 183
Query: 194 DIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKEL 253
D++FL++NR +K L++ + + S+ D + + +
Sbjct: 184 DVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVAS 243
Query: 254 GVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAV 313
GV L+ ++ T +D ++ C I+ S E FG+ E +P+I
Sbjct: 244 GVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIIS 303
Query: 314 NSGGPKESVVDGRTGFLCES-------------------NEEAFAKAMKKIVDNDGNIIQ 354
GG + G + + + + +A D +
Sbjct: 304 AVGGADD-YFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAFTFFKDEK--NRK 360
Query: 355 QFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKKTK 390
++ + + K ++ S + N++L +++
Sbjct: 361 EYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVESR 396
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, complex; HET: GDP;
2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Length = 406
Score = 89.3 bits (222), Expect = 9e-20
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 31/164 (18%)
Query: 195 IVFL-SINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKEL 253
++FL + K + + + +L L +R D V++++ G D E
Sbjct: 211 VLFLGRYDEPR--KGMAVLLAALPKLVARFPD-----VEILIVGRGD-----------ED 252
Query: 254 GVLVKKLKLSDNVLFLTSPSDAAKISLFK----FCHCIIYTPS--NEHFGIVPIEAMFCK 307
+ + L+ ++ FL DA K S + +C P E FGIV +EAM
Sbjct: 253 ELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCA-----PHLGGESFGIVLVEAMAAG 307
Query: 308 RPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDNDG 350
V+A + + + DG G L + + A A+ I+++D
Sbjct: 308 TAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQ 351
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 84.4 bits (208), Expect = 4e-18
Identities = 36/265 (13%), Positives = 76/265 (28%), Gaps = 39/265 (14%)
Query: 118 KSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVYTEGLEKT 177
+S Y++ ++ V NSE K + + P + T
Sbjct: 187 ESTYKYRGPQI----------AVFNSELLKQYFNN--KGYNFTDEYFFQPKINTT----- 229
Query: 178 TPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAG 237
++N +N KE I+ + ++ L + +L + K++ G
Sbjct: 230 ----LKNYINDKRQKEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDR--SNEWKIISVG 283
Query: 238 GYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFG 297
L ++ L + L K I + H
Sbjct: 284 EKHKDI---------------ALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPS 328
Query: 298 IVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNI-IQQF 356
P+E VI S L + N E A+ + ++ + N + +
Sbjct: 329 YPPLEMAHFGLRVITNKYENKDLSNWHSNIVSLEQLNPENIAETLVELCMSFNNRDVDKK 388
Query: 357 SQFGFNRFNEKFSFQAFSIQLNTIV 381
+ +F+ +F ++ +
Sbjct: 389 ESSNMMFYINEFNEFSFIKEIEEKL 413
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann
fold, glycosyltransferase, transferase; 1.50A
{Helicobacter pylori}
Length = 166
Score = 79.9 bits (198), Expect = 4e-18
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 30/161 (18%)
Query: 196 VFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAG-GYDPHNIENVEYYKELG 254
+ RY +KN + I ++ + K + L++ G G K++
Sbjct: 4 KIAMVGRYSNEKNQSVLIKAVALSKY------KQDIVLLLKGKG---------PDEKKIK 48
Query: 255 VLVKKLKLSDNVLFLTSPSDAAKISLFK----FCHCIIYTPSN-EHFGIVPIEAMFCKRP 309
+L +KL + F+ + + + K + H +N E I +EA+
Sbjct: 49 LLAQKLGVKAEFGFV---NSNELLEILKTCTLYVH-----AANVESEAIACLEAISVGIV 100
Query: 310 VIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMKKIVDND 349
+ NS L E N + + + ++N
Sbjct: 101 PVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENK 141
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin
A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB:
2iv3_A*
Length = 342
Score = 78.6 bits (194), Expect = 2e-16
Identities = 28/175 (16%), Positives = 51/175 (29%), Gaps = 35/175 (20%)
Query: 188 PLPGKED-IVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIEN 246
KED ++F+ R K A + +LV+AG
Sbjct: 157 DQVAKEDFLLFMG--RVSPHKGALEAAAFAH----------ACGRRLVLAGP-----AWE 199
Query: 247 VEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPS----------NEHF 296
EY+ E+ + V + ++ L H ++ E
Sbjct: 200 PEYFDEI-----TRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPG 254
Query: 297 GIVPIEAMFCKRPVIAVNSGGPKESVVD--GRTGFLCESNEEAFAKAMKKIVDND 349
V EA PV+ +G E V G+ + + + + + +D
Sbjct: 255 ATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPASD 309
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 8e-11
Identities = 52/311 (16%), Positives = 90/311 (28%), Gaps = 125/311 (40%)
Query: 70 VAWYSE---KPDLVFCDLVSICIPILQAKQFKVLFYCHY----------PDQLLSK-QGS 115
+ W PD + + I P++ Q HY P +L S +G+
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQL-----AHYVVTAKLLGFTPGELRSYLKGA 270
Query: 116 FLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILY--------- 166
T +V ++ +F K + +L+
Sbjct: 271 ----------------TGHSQG-LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 167 -------PSVYTEGLE--KTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLN 217
PS+ + LE + P P+ LSI+ +++ ++ + N
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPM---------------LSISNLTQEQ-VQDYVNKTN 357
Query: 218 SLRSRLSDEMKTHVKL-------VVAG-------------------GYDPHNIENVEYYK 251
S L + + L VV+G G D I +
Sbjct: 358 ---SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP----FS 410
Query: 252 ELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHF------GIVPIEAMF 305
E +KLK S+ L + SP F H + P+++ V A
Sbjct: 411 E-----RKLKFSNRFLPVASP--------F---HSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 306 CKRPVIAVNSG 316
+ PV G
Sbjct: 455 IQIPVYDTFDG 465
Score = 40.4 bits (94), Expect = 0.001
Identities = 61/326 (18%), Positives = 110/326 (33%), Gaps = 107/326 (32%)
Query: 85 VSICIPILQAKQFKVLFYCHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKA--DKIVVN 142
+ +P + QL Q F K L E T A D+
Sbjct: 18 HVLLVPTAS--------FFIA-SQL---QEQFNKI--------LPEPTEGFAADDEPTTP 57
Query: 143 SE-------FTKSVVQATFRSLDHKCLDIL---YPSVYTEGLEKTTPEPIENVLNPLPGK 192
+E + S+V+ + + L++ + + Y EG + I + L +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND------IHALAAKLLQE 111
Query: 193 EDIVFLSINRYERKKNLELAIYSLNSL---------RSRLSDEMKT-HVKLVVA--G-GY 239
D + + K L + + S L + + +LV G G
Sbjct: 112 NDTTLV------KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG- 164
Query: 240 DPHNIENVEYYKEL-------GVLVKKL-KLSDNVL--FLTSPSDAAK-----ISLFKFC 284
N + +Y++EL VLV L K S L + + DA K +++ ++
Sbjct: 165 ---NTD--DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 285 HCIIYTPSNEHFGIVPIEAMFCKRPVIAV----------NSGG--PKE--SVVDGRTG-- 328
TP ++ +PI + P+I V G P E S + G TG
Sbjct: 220 ENPSNTPDKDYLLSIPI-SC----PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 329 -------FLCESNE-EAFAKAMKKIV 346
+ E++ E+F +++K +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAI 300
Score = 31.9 bits (72), Expect = 0.47
Identities = 45/279 (16%), Positives = 86/279 (30%), Gaps = 97/279 (34%)
Query: 113 QGSFLK----SIYR-FPLNKLEEWTTCKADK------------IVVNSEFTKSVVQATFR 155
QGS + +Y+ + + W +AD IV+N+ ++ F
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQ-DVWN--RADNHFKDTYGFSILDIVINNPVNLTIH---FG 1677
Query: 156 SLDHKCLDILYPS-VYTEGLE-KTTPEPIENVLNPLPGKEDIVFLS----INRYERKKN- 208
K + Y + ++ ++ K E I +N F S ++ +
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS--TSYTFRSEKGLLSATQ---FT 1732
Query: 209 ------LELAIYSLNSLRSR-LSDEMKTHVKLVVAG---GYDPHNIENVEYYKELGVLVK 258
+E A + L+S+ L AG G EY L
Sbjct: 1733 QPALTLMEKAAFED--LKSKGLIPADA-----TFAGHSLG---------EY----AALAS 1772
Query: 259 KLKLSDNVLFLTSPSDAAKISLF---KFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNS 315
L+D V+ S ++ +F + P +E M IA+N
Sbjct: 1773 ---LAD-VM---SIESLVEV-VFYRGMTMQVAV--PRDELGRSNY--GM------IAIN- 1813
Query: 316 GGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQ 354
P ++EA ++++ G +++
Sbjct: 1814 --PGRVAASF--------SQEALQYVVERVGKRTGWLVE 1842
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 41/325 (12%), Positives = 88/325 (27%), Gaps = 88/325 (27%)
Query: 90 PILQAKQFKVLFY-----CHYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSE 144
+ FK+ F+ C+ P+ +L L I + + I +
Sbjct: 175 KVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRSD----HSSNIKLRIH 228
Query: 145 FTKSVVQATFRSLDHK-CLDILYPSVYTEGLEK----------TT-PEPIENVLNPLPGK 192
++ ++ +S ++ CL +L +V TT + + + L+
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 193 EDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAG--------------- 237
+ + L + L+ L E+ T ++
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 238 ---GYDPHN------IENVE------YYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFK 282
D + +E + L V + +L
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL--------------- 392
Query: 283 FCHCIIYTPSNEHFGIVPIEAM--FCKRPVIAVNSGGPKESVV---DGRTGFLCESNEEA 337
+I+ + + + K ++ PKES + + E
Sbjct: 393 ---SLIWFDVIK---SDVMVVVNKLHKYSLVE---KQPKESTISIPSIYLELKVKLENEY 443
Query: 338 FAKAM-KKIVDNDGNIIQQFSQFGF 361
A+ + IVD+ NI + F
Sbjct: 444 ---ALHRSIVDHY-NIPKTFDSDDL 464
Score = 42.1 bits (98), Expect = 3e-04
Identities = 37/281 (13%), Positives = 91/281 (32%), Gaps = 63/281 (22%)
Query: 104 HYPDQLLSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLD 163
Y D L + +F+ + F +++ K +++ E ++ +
Sbjct: 17 QYKDILSVFEDAFVDN---FDCKDVQDMP-----KSILSKEEIDHIIMSKDAVSG---TL 65
Query: 164 ILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFL--SINRYERKKNLELAIYSLNSLRS 221
L+ ++ ++ E+ + +E VL + FL I +R+ ++ +Y R
Sbjct: 66 RLFWTLLSKQ-EEMVQKFVEEVLRI-----NYKFLMSPIKTEQRQPSMMTRMY--IEQRD 117
Query: 222 RLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNV------------LFL 269
RL ++ + + +N+ ++ Y +L + +L+ + NV + L
Sbjct: 118 RLYNDNQV---------FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 270 TSPSDAAKISLFKF---------CHC---IIYTPSNEHFGIVPIEAMFCKRPVIAVNSGG 317
F C+ ++ + I P + R + N
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP---NWTSRSDHSSNIKL 225
Query: 318 PKESVVDGRTGFLCESNEEAFAKAMKKIVDN--DGNIIQQF 356
S+ L + + + ++ N + F
Sbjct: 226 RIHSIQAELRRLLK---SKPYENCL-LVLLNVQNAKAWNAF 262
Score = 32.5 bits (73), Expect = 0.27
Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 55/198 (27%)
Query: 63 MIVIALYVAWY---SEKPDLVFCDLVSICIPILQAKQFKVLFYCHYPDQLLSKQGSFL-- 117
I+++L W+ +V L L KQ K P L +
Sbjct: 389 TILLSLI--WFDVIKSDVMVVVNKLHKYS---LVEKQPK-ESTISIPSIYLELKVKLENE 442
Query: 118 ----KSI---YRFPLNKLEEWTTCK--------------------ADKIVVNSEFTKSVV 150
+SI Y P + +++ + F V
Sbjct: 443 YALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM---TLFRM--V 496
Query: 151 QATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERK-KNL 209
FR L+ K + + I N L L + + + +YER +
Sbjct: 497 FLDFRFLEQK--------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 210 E--LAIYSLNSLRSRLSD 225
L N + S+ +D
Sbjct: 549 LDFLPKIEENLICSKYTD 566
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase,
glucose-6-phosphate, yeast, allosteric AC transferase;
HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A*
3nch_A 3naz_A 3o3c_A* 3rsz_A*
Length = 725
Score = 42.1 bits (98), Expect = 3e-04
Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 25/216 (11%)
Query: 151 QATFRSLDHKCLDILYPSVYTEGLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLE 210
QA R+L++ ++ + P + LP + S ++ K+
Sbjct: 392 QAEVRALENTVHEVTTSIGK-RIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKR--- 447
Query: 211 LAIYSLNSLRSRLSDEMKTHVKLVVAGGYDP--HNIENVEYYKELGVLVKKLKLSDNVLF 268
I +L +L + TH +V D + I V+ + VK + + +
Sbjct: 448 -RILALRRPEGQLP-PIVTH--NMVDDANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNA 503
Query: 269 LTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDG--- 325
+ CH ++ E +G P E P I N G + D
Sbjct: 504 NNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIET 563
Query: 326 ------------RTGFLCESNEEAFAKAMKKIVDND 349
R + + E M++ V
Sbjct: 564 NQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKT 599
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5
UDP/ADP-glucose-glycogen syntha rossman folds,
transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Length = 200
Score = 36.8 bits (86), Expect = 0.005
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 291 PSN-EHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFL-CESNEEAFAKAMKKIVDN 348
PS E FG+V +EAM IA GG ++ + + TG L + A A+ K ++
Sbjct: 122 PSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALEL 180
Query: 349 DGNIIQQFSQ 358
+ + +F +
Sbjct: 181 SRSDLSKFRE 190
>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing,
ladlidadg, catalytic mechanism, metal binding; HET: DNA;
2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A*
3ool_A 3oor_A
Length = 235
Score = 35.3 bits (81), Expect = 0.021
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Query: 111 SKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPSVY 170
K +++ + ++W K + V+ ++ H+ + L
Sbjct: 62 WKNKAYMDHVC----LLYDQWVLSPPHKKERVNHLGNLVITWGAQTFKHQAFNKLANLFI 117
Query: 171 TEGLEKTTPEPIENVLNPL 189
+ +EN L P+
Sbjct: 118 VNNKKTIPNNLVENYLTPM 136
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich,
structural genomics, PSI, protein structure initiative;
2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB:
1u0r_A 1y3i_A* 1y3h_A
Length = 307
Score = 30.4 bits (69), Expect = 0.90
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 309 PVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDND 349
PV+ VN G R GFL E+ EA ++ +V D
Sbjct: 101 PVLGVNLG---------RIGFLAEAEAEAIDAVLEHVVAQD 132
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 29.4 bits (66), Expect = 1.2
Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Query: 235 VAGGYDPHNIENVEYYKELGV-----LVKKLKLSDNVLFLTSPSDAAKISLFKFCHCII- 288
+ G P+ + +++ GV L + ++ ++ K + + H I
Sbjct: 9 IGGSGLPYTENEILEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIPIP 68
Query: 289 --YTPSNEHFGIVPIEAMFCKRPVIAVN-SGGPKESVVDGRTGFLC 331
PS+ F + ++ + ++ V+ GG GRTG +
Sbjct: 69 DGGVPSDSQFLTI-MKWLLSEKEGNLVHCVGGI------GRTGTIL 107
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 30.0 bits (68), Expect = 1.3
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 217 NSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYY 250
+ L R S K + AGGY ++ +E Y
Sbjct: 11 SGLVPRGSHAPKVGRLIYTAGGYFRQSLSYLEAY 44
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose
binding protein, periplasmic binding protein, GBP; HET:
BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Length = 313
Score = 29.7 bits (67), Expect = 1.6
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 287 IIYTPSNEHFGIVPI--EAMFCKRPVIAVNSGGPKESVVDGRTGFLCESNEEA---FAKA 341
I PS+ ++P +A+ PV+ +++ P GR ++ N +A
Sbjct: 61 IAIAPSDPT-AVIPTIKKALEMGIPVVTLDTDSPD----SGRYVYIGTDNYQAGYTAGLI 115
Query: 342 MKKIVDNDGNII 353
MK+++ G ++
Sbjct: 116 MKELLGGKGKVV 127
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region;
PHZF enzyme superfamily, double hot-DOG, structural
genomics; 2.05A {Saccharomyces cerevisiae}
Length = 300
Score = 29.1 bits (66), Expect = 2.1
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 9 TI-TATAWGATGPRTTAHDHCFKETKDGTLPVKVIGDWL 46
TI + A+ TTA E K G +P+ + +
Sbjct: 84 TIGSCKAFLEFTKNTTATSLVQ-ECKIGAVPITINEGLI 121
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 29.2 bits (66), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 218 SLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYY 250
S+R+RL M +VV GG P I +VE Y
Sbjct: 3 SVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECY 35
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc,
PSI-biology, structural genomics; 1.91A {Legionella
pneumophila subsp}
Length = 297
Score = 28.9 bits (65), Expect = 2.6
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 309 PVIAVNSGGPKESVVDGRTGFLCESNEEA---FAKAMKKIVDNDGNII 353
PVIAV++ + + FL N A + ++ + +
Sbjct: 88 PVIAVDTRPK-DKTKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRAL 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.7
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 257 VKKLKLSDNVLFLTSPSDAAKISL 280
+KKL+ S L L + A +++
Sbjct: 22 LKKLQAS---LKLYADDSAPALAI 42
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold,
hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB:
2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Length = 212
Score = 28.2 bits (62), Expect = 4.3
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 21/81 (25%)
Query: 271 SPSDAAKISLFKF-CHCIIYTPSNEH-FGIVPIEA--MFCKRPVIAVNSGGPKESVVDGR 326
S ++ ++ +K CH +++ PS F VPI + R DGR
Sbjct: 22 SREESLQLEGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRF--------------DGR 67
Query: 327 TGF---LCESNEEAFAKAMKK 344
GF ++ + + + +K+
Sbjct: 68 LGFPGGFVDTRDISLEEGLKR 88
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of
lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria
monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A*
2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A*
3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A*
3v8r_A*
Length = 272
Score = 28.0 bits (63), Expect = 5.3
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 9/44 (20%)
Query: 309 PVIAVNSGGPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNI 352
I +++G GF + K +K + +
Sbjct: 63 AFIGIHTG---------HLGFYADWRPAEADKLVKLLAKGEYQK 97
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target
11229F, transport protein, structural genomics; 2.02A
{Bacillus halodurans c-125}
Length = 305
Score = 27.7 bits (62), Expect = 6.2
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 309 PVIAVNSGGPKESVVDGRTGFLCESNEEA---FAKAMKKIVDNDGNII 353
P++ +SG P FL +N A A M +++D +G +
Sbjct: 88 PIVLFDSGAPD----SHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVA 131
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis
multifunctional enzyme, cell WALL, peptidoglycan, gamma
lactam antibiotics; HET: PL7; 2.4A {Streptococcus
pneumoniae} PDB: 2jci_A* 2je5_A*
Length = 720
Score = 27.8 bits (62), Expect = 7.4
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 343 KKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNML 385
KI DG ++ + + Q +S TI+ +L
Sbjct: 516 SKIEAADGRVVYE---------YQDKPVQVYSKATATIMQGLL 549
>2g8l_A 287AA long hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1
Length = 299
Score = 27.2 bits (60), Expect = 9.0
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 202 RYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAG 237
+ K+ E+A + ++ +L + + VKL + G
Sbjct: 84 IEYKLKSEEMARKVADIIKRKLKLDFELAVKLAIIG 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.417
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,953,276
Number of extensions: 357263
Number of successful extensions: 868
Number of sequences better than 10.0: 1
Number of HSP's gapped: 850
Number of HSP's successfully gapped: 39
Length of query: 390
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 295
Effective length of database: 4,049,298
Effective search space: 1194542910
Effective search space used: 1194542910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)